rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
69378,SRR18516702,SRX14647801,SRS12413210,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007475BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Whole cell CAGE,DCD003740SQ,DCD003740SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003740SQ.USERdanio-user.R1.fastq.gz,fastq,57981552.0,1207949.0,CAGE seq Mueller lab 0013AS.DCD003740SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:13228227;C:15492921;G:15505739;T:13750626;N:4039,48,0,,,13228227,15492921,15505739,13750626,4039,SRX14647801,SRS12413210,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.18388,,0.02619,,0.85811,,0.52264,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69379,SRR18516703,SRX14647800,SRS12413216,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007476BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Nuclear CAGE,DCD003719SQ,DCD003719SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003719SQ.USERdanio-user.R1.fastq.gz,fastq,585510192.0,12198129.0,CAGE seq Mueller lab 0014AS.DCD003719SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:129885703;C:153766182;G:160138903;T:141666883;N:52521,48,0,,,129885703,153766182,160138903,141666883,52521,SRX14647800,SRS12413216,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.20391,,0.04196,,0.83453,,0.4979,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69380,SRR18516704,SRX14647799,SRS12413216,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007476BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Nuclear CAGE,DCD003718SQ,DCD003718SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003718SQ.USERdanio-user.R1.fastq.gz,fastq,593136528.0,12357011.0,CAGE seq Mueller lab 0014AS.DCD003718SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:130366174;C:156810351;G:159219365;T:146691922;N:48716,48,0,,,130366174,156810351,159219365,146691922,48716,SRX14647799,SRS12413216,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.14873,,0.03239,,0.86557,,0.49634,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69381,SRR18516705,SRX14647798,SRS12413216,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007476BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Nuclear CAGE,DCD003723SQ,DCD003723SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003723SQ.USERdanio-user.R1.fastq.gz,fastq,422696256.0,8806172.0,CAGE seq Mueller lab 0014AS.DCD003723SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:92712632;C:111696999;G:115145846;T:103105611;N:35168,48,0,,,92712632,111696999,115145846,103105611,35168,SRX14647798,SRS12413216,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.1594,,0.02997,,0.85591,,0.48496,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69382,SRR18516706,SRX14647797,SRS12413215,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007477BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Nuclear CAGE,DCD003737SQ,DCD003737SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003737SQ.USERdanio-user.R1.fastq.gz,fastq,1041108672.0,21689764.0,CAGE seq Mueller lab 0014AS.DCD003737SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:233996885;C:276232291;G:275987771;T:254800016;N:91709,48,0,,,233996885,276232291,275987771,254800016,91709,SRX14647797,SRS12413215,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.19665,,0.0423,,0.84271,,0.49525,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69383,SRR18516707,SRX14647796,SRS12413215,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007477BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Nuclear CAGE,DCD003729SQ,DCD003729SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003729SQ.USERdanio-user.R1.fastq.gz,fastq,383268528.0,7984761.0,CAGE seq Mueller lab 0014AS.DCD003729SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:83789437;C:103371728;G:102876480;T:93198236;N:32647,48,0,,,83789437,103371728,102876480,93198236,32647,SRX14647796,SRS12413215,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.15605,,0.03059,,0.86951,,0.50369,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69384,SRR18516708,SRX14647795,SRS12413215,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007477BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Nuclear CAGE,DCD003734SQ,DCD003734SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003734SQ.USERdanio-user.R1.fastq.gz,fastq,560665392.0,11680529.0,CAGE seq Mueller lab 0014AS.DCD003734SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:123278501;C:149059346;G:152514412;T:135763704;N:49429,48,0,,,123278501,149059346,152514412,135763704,49429,SRX14647795,SRS12413215,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.16518,,0.02906,,0.85283,,0.47924,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69385,SRR18516709,SRX14647794,SRS12413214,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007471BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Whole cell CAGE,DCD003731SQ,DCD003731SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003731SQ.USERdanio-user.R1.fastq.gz,fastq,534745104.0,11140523.0,CAGE seq Mueller lab 0013AS.DCD003731SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:122900964;C:145291239;G:142314928;T:124199394;N:38579,48,0,,,122900964,145291239,142314928,124199394,38579,SRX14647794,SRS12413214,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.21193,,0.03662,,0.8576,,0.51061,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69386,SRR18516710,SRX14647793,SRS12413214,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007471BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Whole cell CAGE,DCD003733SQ,DCD003733SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003733SQ.USERdanio-user.R1.fastq.gz,fastq,1106623152.0,23054649.0,CAGE seq Mueller lab 0013AS.DCD003733SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:244437769;C:302018709;G:293780395;T:266329857;N:56422,48,0,,,244437769,302018709,293780395,266329857,56422,SRX14647793,SRS12413214,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.25973,,0.02959,,0.84778,,0.50948,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69387,SRR18516711,SRX14647792,SRS12413214,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007471BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Whole cell CAGE,DCD003735SQ,DCD003735SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003735SQ.USERdanio-user.R1.fastq.gz,fastq,829987920.0,17291415.0,CAGE seq Mueller lab 0013AS.DCD003735SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:189638839;C:226118233;G:218991435;T:195178858;N:60555,48,0,,,189638839,226118233,218991435,195178858,60555,SRX14647792,SRS12413214,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.20953,,0.03562,,0.85285,,0.52927,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69388,SRR18516712,SRX14647791,SRS12413213,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007472BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Whole cell CAGE,DCD003730SQ,DCD003730SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003730SQ.USERdanio-user.R1.fastq.gz,fastq,358730736.0,7473557.0,CAGE seq Mueller lab 0013AS.DCD003730SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:82114871;C:96481695;G:97889447;T:82217691;N:27032,48,0,,,82114871,96481695,97889447,82217691,27032,SRX14647791,SRS12413213,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.22955,,0.03488,,0.84719,,0.51204,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69389,SRR18516713,SRX14647790,SRS12413209,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007478BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Nuclear CAGE,DCD003732SQ,DCD003732SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003732SQ.USERdanio-user.R1.fastq.gz,fastq,833831760.0,17371495.0,CAGE seq Mueller lab 0014AS.DCD003732SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:184529953;C:221676233;G:220734592;T:206820467;N:70515,48,0,,,184529953,221676233,220734592,206820467,70515,SRX14647790,SRS12413209,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.16336,,0.03655,,0.88633,,0.47894,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69390,SRR18516714,SRX14647789,SRS12413213,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007472BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Whole cell CAGE,DCD003738SQ,DCD003738SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003738SQ.USERdanio-user.R1.fastq.gz,fastq,1160622288.0,24179631.0,CAGE seq Mueller lab 0013AS.DCD003738SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:261568282;C:313737609;G:310169539;T:275088632;N:58226,48,0,,,261568282,313737609,310169539,275088632,58226,SRX14647789,SRS12413213,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.27025,,0.0344,,0.86505,,0.50961,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69391,SRR18516715,SRX14647788,SRS12413213,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007472BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Whole cell CAGE,DCD003722SQ,DCD003722SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003722SQ.USERdanio-user.R1.fastq.gz,fastq,666656256.0,13888672.0,CAGE seq Mueller lab 0013AS.DCD003722SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:149770159;C:178068662;G:177661463;T:161122864;N:33108,48,0,,,149770159,178068662,177661463,161122864,33108,SRX14647788,SRS12413213,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.25511,,0.02671,,0.86436,,0.50531,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69392,SRR18516716,SRX14647787,SRS12413212,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007473BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Whole cell CAGE,DCD003727SQ,DCD003727SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003727SQ.USERdanio-user.R1.fastq.gz,fastq,924879888.0,19268331.0,CAGE seq Mueller lab 0013AS.DCD003727SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:214005056;C:251321459;G:244648845;T:214835794;N:68734,48,0,,,214005056,251321459,244648845,214835794,68734,SRX14647787,SRS12413212,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.2165,,0.03701,,0.84768,,0.54102,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69393,SRR18516717,SRX14647786,SRS12413212,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007473BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Whole cell CAGE,DCD003717SQ,DCD003717SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003717SQ.USERdanio-user.R1.fastq.gz,fastq,1485845376.0,30955112.0,CAGE seq Mueller lab 0013AS.DCD003717SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:329122121;C:402514173;G:390388645;T:363745867;N:74570,48,0,,,329122121,402514173,390388645,363745867,74570,SRX14647786,SRS12413212,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.23893,,0.0248,,0.86125,,0.50849,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69394,SRR18516718,SRX14647785,SRS12413212,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007473BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Whole cell CAGE,DCD003739SQ,DCD003739SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003739SQ.USERdanio-user.R1.fastq.gz,fastq,1372622736.0,28596307.0,CAGE seq Mueller lab 0013AS.DCD003739SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:306709302;C:373224967;G:360990874;T:331626639;N:70954,48,0,,,306709302,373224967,360990874,331626639,70954,SRX14647785,SRS12413212,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.26574,,0.02914,,0.85113,,0.52147,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69395,SRR18516719,SRX14647784,SRS12413211,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007474BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Nuclear CAGE,DCD003721SQ,DCD003721SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003721SQ.USERdanio-user.R1.fastq.gz,fastq,425483904.0,8864248.0,CAGE seq Mueller lab 0014AS.DCD003721SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:98642418;C:114264552;G:114112965;T:98433833;N:30136,48,0,,,98642418,114264552,114112965,98433833,30136,SRX14647784,SRS12413211,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.21658,,0.03797,,0.85226,,0.48604,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69396,SRR18516720,SRX14647783,SRS12413211,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007474BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Nuclear CAGE,DCD003736SQ,DCD003736SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003736SQ.USERdanio-user.R1.fastq.gz,fastq,533681088.0,11118356.0,CAGE seq Mueller lab 0014AS.DCD003736SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:115850766;C:142773032;G:143794343;T:131220159;N:42788,48,0,,,115850766,142773032,143794343,131220159,42788,SRX14647783,SRS12413211,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.15054,,0.0279,,0.87434,,0.4867,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69397,SRR18516721,SRX14647782,SRS12413211,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007474BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Nuclear CAGE,DCD003726SQ,DCD003726SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003726SQ.USERdanio-user.R1.fastq.gz,fastq,250307520.0,5214740.0,CAGE seq Mueller lab 0014AS.DCD003726SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:55705158;C:65429159;G:68119770;T:61031856;N:21577,48,0,,,55705158,65429159,68119770,61031856,21577,SRX14647782,SRS12413211,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.19864,,0.04157,,0.85279,,0.48786,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69398,SRR18516722,SRX14647781,SRS12413210,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007475BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Whole cell CAGE,DCD003720SQ,DCD003720SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003720SQ.USERdanio-user.R1.fastq.gz,fastq,536292432.0,11172759.0,CAGE seq Mueller lab 0013AS.DCD003720SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:122756671;C:142850582;G:140364671;T:130293257;N:27251,48,0,,,122756671,142850582,140364671,130293257,27251,SRX14647781,SRS12413210,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.23072,,0.04674,,0.89572,,0.59187,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69399,SRR18516723,SRX14647780,SRS12413210,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007475BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Whole cell CAGE,DCD003725SQ,DCD003725SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003725SQ.USERdanio-user.R1.fastq.gz,fastq,1839979776.0,38332912.0,CAGE seq Mueller lab 0013AS.DCD003725SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:422772310;C:484519947;G:479159876;T:453437875;N:89768,48,0,,,422772310,484519947,479159876,453437875,89768,SRX14647780,SRS12413210,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.22646,,0.03978,,0.88574,,0.556,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69400,SRR18516724,SRX14647779,SRS12413209,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007478BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Nuclear CAGE,DCD003728SQ,DCD003728SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003728SQ.USERdanio-user.R1.fastq.gz,fastq,778510272.0,16218964.0,CAGE seq Mueller lab 0014AS.DCD003728SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:170505572;C:207531743;G:206655879;T:193751108;N:65970,48,0,,,170505572,207531743,206655879,193751108,65970,SRX14647779,SRS12413209,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.1419,,0.02783,,0.8954,,0.49693,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69401,SRR18516725,SRX14647778,SRS12413209,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007478BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Nuclear CAGE,DCD003724SQ,DCD003724SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003724SQ.USERdanio-user.R1.fastq.gz,fastq,641108496.0,13356427.0,CAGE seq Mueller lab 0014AS.DCD003724SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:143927298;C:167543966;G:171107575;T:158473503;N:56154,48,0,,,143927298,167543966,171107575,158473503,56154,SRX14647778,SRS12413209,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.20203,,0.0454,,0.87091,,0.51364,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures