rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 48990,SRR7612999,SRX4477699,SRS3602899,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 156 ZF brain smallRNAseq,GSM3309607,,source name:brain|strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,NH FLI 156 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,GSM3309607,GSM3309607: NH FLI 156 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309607,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309607,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,681376400.0,13627528.0,GSM3309607 r1,0:50,A:149742268;C:163827889;G:200725169;T:167045618;N:35456,50,,,,149742268,163827889,200725169,167045618,35456,SRX4477699,SRS3602899,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.00576,,0.00087,,0.9959,,0.70299,,50,,T,,under 1.2% mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48991,SRR7612998,SRX4477698,SRS3602898,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 154 ZF brain smallRNAseq,GSM3309606,,source name:brain|strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,NH FLI 154 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,GSM3309606,GSM3309606: NH FLI 154 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309606,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309606,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1196666100.0,23933322.0,GSM3309606 r1,0:50,A:243243770;C:320296221;G:371488432;T:261584801;N:52876,50,,,,243243770,320296221,371488432,261584801,52876,SRX4477698,SRS3602898,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01627,,0.00325,,0.99293,,0.7183,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48992,SRR7612997,SRX4477697,SRS3602897,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 153 ZF brain smallRNAseq,GSM3309605,,source name:brain|strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,NH FLI 153 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,GSM3309605,GSM3309605: NH FLI 153 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309605,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309605,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,2123002650.0,42460053.0,GSM3309605 r1,0:50,A:461619025;C:513713514;G:623358074;T:524212056;N:99981,50,,,,461619025,513713514,623358074,524212056,99981,SRX4477697,SRS3602897,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02759,,0.00329,,0.99287,,0.62418,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48993,SRR7612996,SRX4477696,SRS3602896,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 152 ZF brain smallRNAseq,GSM3309604,,source name:brain|strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,NH FLI 152 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,GSM3309604,GSM3309604: NH FLI 152 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309604,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309604,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1434455750.0,28689115.0,GSM3309604 r1,0:50,A:283488481;C:381046485;G:446805516;T:323062667;N:52601,50,,,,283488481,381046485,446805516,323062667,52601,SRX4477696,SRS3602896,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.04109,,0.00889,,0.98786,,0.73333,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48994,SRR7612995,SRX4477695,SRS3602895,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 150 ZF brain smallRNAseq,GSM3309603,,source name:brain|strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,NH FLI 150 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgpu.1:GFP|tissue:brain|age:3 years|Sex:male,GSM3309603,GSM3309603: NH FLI 150 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309603,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309603,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1338770950.0,26775419.0,GSM3309603 r1,0:50,A:269497925;C:353627074;G:405585207;T:310020028;N:40716,50,,,,269497925,353627074,405585207,310020028,40716,SRX4477695,SRS3602895,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02887,,0.00518,,0.99052,,0.68568,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48995,SRR7612994,SRX4477694,SRS3602894,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 143 ZF brain smallRNAseq,GSM3309602,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,NH FLI 143 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,GSM3309602,GSM3309602: NH FLI 143 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309602,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309602,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,626017200.0,12520344.0,GSM3309602 r1,0:50,A:134906441;C:152023722;G:185947594;T:153106683;N:32760,50,,,,134906441,152023722,185947594,153106683,32760,SRX4477694,SRS3602894,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.00695,,0.00127,,0.99529,,0.71945,,50,,T,,under 1.2% mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48996,SRR7612993,SRX4477693,SRS3602893,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 142 ZF brain smallRNAseq,GSM3309601,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,NH FLI 142 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,GSM3309601,GSM3309601: NH FLI 142 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309601,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309601,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,602153350.0,12043067.0,GSM3309601 r1,0:50,A:130038217;C:144346274;G:180485776;T:147255994;N:27089,50,,,,130038217,144346274,180485776,147255994,27089,SRX4477693,SRS3602893,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01383,,0.002,,0.99545,,0.61426,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48997,SRR7612992,SRX4477692,SRS3602892,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 140 ZF brain smallRNAseq,GSM3309600,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,NH FLI 140 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,GSM3309600,GSM3309600: NH FLI 140 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309600,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309600,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1040923600.0,20818472.0,GSM3309600 r1,0:50,A:226013762;C:247845507;G:308453469;T:258569100;N:41762,50,,,,226013762,247845507,308453469,258569100,41762,SRX4477692,SRS3602892,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01433,,0.00292,,0.99484,,0.60865,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48998,SRR7612991,SRX4477691,SRS3602891,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 139 ZF brain smallRNAseq,GSM3309599,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,NH FLI 139 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,GSM3309599,GSM3309599: NH FLI 139 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309599,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309599,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,612192100.0,12243842.0,GSM3309599 r1,0:50,A:133152501;C:147001376;G:181291514;T:150727221;N:19488,50,,,,133152501,147001376,181291514,150727221,19488,SRX4477691,SRS3602891,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01776,,0.00244,,0.9945,,0.59354,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 48999,SRR7612990,SRX4477690,SRS3602890,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 138 ZF brain smallRNAseq,GSM3309598,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,NH FLI 138 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:2 years|Sex:male,GSM3309598,GSM3309598: NH FLI 138 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309598,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309598,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1205010900.0,24100218.0,GSM3309598 r1,0:50,A:254443623;C:292846390;G:362958072;T:294704148;N:58667,50,,,,254443623,292846390,362958072,294704148,58667,SRX4477690,SRS3602890,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02329,,0.00277,,0.99442,,0.57362,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49000,SRR7612989,SRX4477689,SRS3602889,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 129 ZF brain smallRNAseq,GSM3309597,,source name:brain|strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,NH FLI 129 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,GSM3309597,GSM3309597: NH FLI 129 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309597,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309597,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,905166650.0,18103333.0,GSM3309597 r1,0:50,A:183798257;C:231083843;G:277164667;T:213076607;N:43276,50,,,,183798257,231083843,277164667,213076607,43276,SRX4477689,SRS3602889,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.03359,,0.00484,,0.99105,,0.62836,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49001,SRR7612988,SRX4477688,SRS3602888,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 128 ZF brain smallRNAseq,GSM3309596,,source name:brain|strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,NH FLI 128 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,GSM3309596,GSM3309596: NH FLI 128 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309596,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309596,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1304729150.0,26094583.0,GSM3309596 r1,0:50,A:261793442;C:350134689;G:395019822;T:297741148;N:40049,50,,,,261793442,350134689,395019822,297741148,40049,SRX4477688,SRS3602888,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02649,,0.00457,,0.99038,,0.65849,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49002,SRR7612987,SRX4477687,SRS3602887,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 127 ZF brain smallRNAseq,GSM3309595,,source name:brain|strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,NH FLI 127 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,GSM3309595,GSM3309595: NH FLI 127 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309595,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309595,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1087717850.0,21754357.0,GSM3309595 r1,0:50,A:233191242;C:266842531;G:322704369;T:264927170;N:52538,50,,,,233191242,266842531,322704369,264927170,52538,SRX4477687,SRS3602887,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02888,,0.00371,,0.99322,,0.60352,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49003,SRR7612986,SRX4477686,SRS3602886,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 125 ZF brain smallRNAseq,GSM3309594,,source name:brain|strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,NH FLI 125 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,GSM3309594,GSM3309594: NH FLI 125 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309594,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309594,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,745015250.0,14900305.0,GSM3309594 r1,0:50,A:160725228;C:177900490;G:219158125;T:187195853;N:35554,50,,,,160725228,177900490,219158125,187195853,35554,SRX4477686,SRS3602886,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.02669,,0.00263,,0.99348,,0.564,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49004,SRR7612985,SRX4477685,SRS3602885,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 124 ZF brain smallRNAseq,GSM3309593,,source name:brain|strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,NH FLI 124 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgflk:mCherry|tissue:brain|age:1 year|Sex:male,GSM3309593,GSM3309593: NH FLI 124 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309593,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309593,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1305373550.0,26107471.0,GSM3309593 r1,0:50,A:303613747;C:302726844;G:364736102;T:334233710;N:63147,50,,,,303613747,302726844,364736102,334233710,63147,SRX4477685,SRS3602885,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.03499,,0.00371,,0.99362,,0.5891,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49005,SRR7612984,SRX4477684,SRS3602884,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 114 ZF brain smallRNAseq,GSM3309592,,source name:brain|strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,NH FLI 114 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,GSM3309592,GSM3309592: NH FLI 114 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309592,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309592,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,722165700.0,14443314.0,GSM3309592 r1,0:50,A:158514262;C:171787722;G:214687494;T:177143548;N:32674,50,,,,158514262,171787722,214687494,177143548,32674,SRX4477684,SRS3602884,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01251,,0.00195,,0.99584,,0.60892,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49006,SRR7612983,SRX4477683,SRS3602883,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 109 ZF brain smallRNAseq,GSM3309591,,source name:brain|strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,NH FLI 109 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,GSM3309591,GSM3309591: NH FLI 109 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309591,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309591,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1295539450.0,25910789.0,GSM3309591 r1,0:50,A:292712777;C:309650541;G:373811139;T:319271810;N:93183,50,,,,292712777,309650541,373811139,319271810,93183,SRX4477683,SRS3602883,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.07779,,0.00531,,0.99431,,0.5455,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49007,SRR7612982,SRX4477682,SRS3602882,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 99 100 ZF brain smallRNAseq,GSM3309590,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,NH FLI 99 100 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,GSM3309590,GSM3309590: NH FLI 99 100 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309590,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309590,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,433373950.0,8667479.0,GSM3309590 r1,0:50,A:93001141;C:105441767;G:129717150;T:105194380;N:19512,50,,,,93001141,105441767,129717150,105194380,19512,SRX4477682,SRS3602882,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01476,,0.0021,,0.99555,,0.64442,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49008,SRR7612981,SRX4477681,SRS3602881,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 97 98 ZF brain smallRNAseq,GSM3309589,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,NH FLI 97 98 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,GSM3309589,GSM3309589: NH FLI 97 98 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309589,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309589,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,510617150.0,10212343.0,GSM3309589 r1,0:50,A:110447838;C:121736402;G:152183388;T:126228958;N:20564,50,,,,110447838,121736402,152183388,126228958,20564,SRX4477681,SRS3602881,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01519,,0.00277,,0.99409,,0.63157,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49009,SRR7612980,SRX4477680,SRS3602880,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 95 96 ZF brain smallRNAseq,GSM3309588,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,NH FLI 95 96 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,GSM3309588,GSM3309588: NH FLI 95 96 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309588,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309588,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,472516100.0,9450322.0,GSM3309588 r1,0:50,A:103765011;C:113400404;G:139267589;T:116067916;N:15180,50,,,,103765011,113400404,139267589,116067916,15180,SRX4477680,SRS3602880,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01894,,0.00292,,0.99411,,0.58808,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49010,SRR7612979,SRX4477679,SRS3602879,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 116 ZF brain smallRNAseq,GSM3309587,,source name:brain|strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,NH FLI 116 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,GSM3309587,GSM3309587: NH FLI 116 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309587,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309587,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,715226800.0,14304536.0,GSM3309587 r1,0:50,A:159838696;C:168777427;G:208871390;T:177701320;N:37967,50,,,,159838696,168777427,208871390,177701320,37967,SRX4477679,SRS3602879,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.00535,,0.00095,,0.99677,,0.70896,,50,,T,,under 1.2% mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49011,SRR7612978,SRX4477678,SRS3602878,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 112 ZF brain smallRNAseq,GSM3309586,,source name:brain|strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,NH FLI 112 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,GSM3309586,GSM3309586: NH FLI 112 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309586,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309586,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1026870700.0,20537414.0,GSM3309586 r1,0:50,A:221725135;C:249408204;G:304663061;T:251034143;N:40157,50,,,,221725135,249408204,304663061,251034143,40157,SRX4477678,SRS3602878,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01708,,0.00331,,0.99354,,0.66357,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49012,SRR7612977,SRX4477677,SRS3602877,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 111 ZF brain smallRNAseq,GSM3309585,,source name:brain|strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,NH FLI 111 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC Tgwt1a:GFP|tissue:brain|age:3.5 years|Sex:male,GSM3309585,GSM3309585: NH FLI 111 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309585,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309585,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,743568750.0,14871375.0,GSM3309585 r1,0:50,A:166161134;C:175989827;G:216120925;T:185273082;N:23782,50,,,,166161134,175989827,216120925,185273082,23782,SRX4477677,SRS3602877,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01548,,0.00239,,0.99515,,0.60786,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49013,SRR7612976,SRX4477676,SRS3602906,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 103 104 ZF brain smallRNAseq,GSM3309584,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,NH FLI 103 104 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,GSM3309584,GSM3309584: NH FLI 103 104 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309584,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309584,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,1106423150.0,22128463.0,GSM3309584 r1,0:50,A:234017026;C:276221869;G:334967256;T:261138362;N:78637,50,,,,234017026,276221869,334967256,261138362,78637,SRX4477676,SRS3602906,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.07804,,0.00455,,0.99263,,0.55094,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System 49014,SRR7612975,SRX4477675,SRS3602876,SRP155545,PRJNA483217,Sequencing of Danio rerio brain for 5 age groups,GSE117807,Transcriptome Analysis,Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.,,,,NH FLI 101 102 ZF brain smallRNAseq,GSM3309583,,source name:brain|strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,NH FLI 101 102 ZF brain smallRNAseq,Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.,brain,,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,,strain:AB JxT\xFC|tissue:brain|age:6 month|Sex:male,GSM3309583,GSM3309583: NH FLI 101 102 ZF brain smallRNAseq; Danio rerio; ncRNA Seq,GSM3309583,,1,Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.,GEO Accession:GSM3309583,ncRNA-Seq,TRANSCRIPTOMIC,size fractionation,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP155545,,,,,929857100.0,18597142.0,GSM3309583 r1,0:50,A:195349293;C:237069996;G:279453097;T:217936195;N:48519,50,,,,195349293,237069996,279453097,217936195,48519,SRX4477675,SRS3602876,SRA745937,GEO,Leibniz Institute for Age Research - Fritz Lipmann Institute,1,0.01233,,0.00233,,0.99417,,0.76993,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2018-07-27,Adult,Adult,Brain,Nervous System