rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
95,DRR050167,DRX045209,DRS025834,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 3,SAMD00044057,,sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044057,DRX045209,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044057,,,,371748120.0,3469843.0,DRR050167,0:107.14,A:107190409;C:79475572;G:83520360;T:101561779;N:0,107,,,,107190409,79475572,83520360,101561779,0,DRX045209,DRS025834,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.81026,,0.26715,,0.86953,,0.52321,,51,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
96,DRR050166,DRX045208,DRS025833,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 2,SAMD00044056,,sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044056,DRX045208,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044056,,,,425549011.0,3275261.0,DRR050166,0:129.93,A:126640704;C:86415371;G:90822163;T:121670773;N:0,129,,,,126640704,86415371,90822163,121670773,0,DRX045208,DRS025833,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80223,,0.31429,,0.85861,,0.5272,,57,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
97,DRR050165,DRX045207,DRS025832,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 1,SAMD00044055,,sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044055,DRX045207,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044055,,,,584599765.0,3941083.0,DRR050165,0:148.33,A:164329030;C:129885620;G:136727379;T:153657736;N:0,148,,,,164329030,129885620,136727379,153657736,0,DRX045207,DRS025832,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.83769,,0.25395,,0.83116,,0.52784,,185,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
98,DRR050164,DRX045206,DRS025831,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 3,SAMD00044054,,sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044054,DRX045206,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044054,,,,343014114.0,3827762.0,DRR050164,0:89.61,A:99421434;C:73070267;G:77738821;T:92783592;N:0,89,,,,99421434,73070267,77738821,92783592,0,DRX045206,DRS025831,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.78953,,0.25529,,0.87367,,0.52148,,24,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
99,DRR050163,DRX045205,DRS025830,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 2,SAMD00044053,,sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044053,DRX045205,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044053,,,,533069427.0,3824140.0,DRR050163,0:139.40,A:152608173;C:113928273;G:120051739;T:146481242;N:0,139,,,,152608173,113928273,120051739,146481242,0,DRX045205,DRS025830,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80412,,0.26768,,0.85338,,0.52255,,245,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
100,DRR050162,DRX045204,DRS025829,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 1,SAMD00044052,,sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044052,DRX045204,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044052,,,,478262965.0,4224064.0,DRR050162,0:113.22,A:136348264;C:104872341;G:113114502;T:123927858;N:0,113,,,,136348264,104872341,113114502,123927858,0,DRX045204,DRS025829,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.86947,,0.29839,,0.83317,,0.51453,,80,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
282,DRR179616,DRX170142,DRS185505,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 2,Fin xanthophore 03,SAMD00172019,,sample name:Zebrafish pigment cell 06|cell type:Xanthophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172019,DRX170142,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>232</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172019,,,,376558775.0,1624500.0,DRR179616,0:231.80,A:107837072;C:79508449;G:79372899;T:109840355;N:0,231,,,,107837072,79508449,79372899,109840355,0,DRX170142,DRS185505,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.86944,,0.10951,,0.90425,,0.59385,,311,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
283,DRR179615,DRX170141,DRS185504,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin xanthophore 02,SAMD00172018,,sample name:Zebrafish pigment cell 05|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172018,DRX170141,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>243</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172018,,,,515115515.0,2124170.0,DRR179615,0:242.50,A:138421982;C:119032803;G:119412227;T:138248503;N:0,242,,,,138421982,119032803,119412227,138248503,0,DRX170141,DRS185504,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.88998,,0.05858,,0.88051,,0.50917,,284,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
284,DRR179614,DRX170140,DRS185503,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin xanthophore 01,SAMD00172017,,sample name:Zebrafish pigment cell 04|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172017,DRX170140,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>247</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172017,,,,371242152.0,1504407.0,DRR179614,0:246.77,A:99341086;C:86126839;G:86264882;T:99509345;N:0,246,,,,99341086,86126839,86264882,99509345,0,DRX170140,DRS185503,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.88672,,0.06422,,0.85679,,0.5066,,56,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
285,DRR179613,DRX170139,DRS185502,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 2,Fin melanophore 03,SAMD00172016,,sample name:Zebrafish pigment cell 03|cell type:Melanophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172016,DRX170139,Zebrafish fin melanophore 03,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>248</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172016,,,,342802993.0,1585538.0,DRR179613,0:216.21,A:90833658;C:80789744;G:80463233;T:90716358;N:0,216,,,,90833658,80789744,80463233,90716358,0,DRX170139,DRS185502,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.8312,,0.03528,,0.88605,,0.47299,,285,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
286,DRR179612,DRX170138,DRS185501,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin melanophore 02,SAMD00172015,,sample name:Zebrafish pigment cell 02|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172015,DRX170138,Zebrafish fin melanophore 02,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>216</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172015,,,,538412675.0,2168231.0,DRR179612,0:248.32,A:147128403;C:121854818;G:121564109;T:147865345;N:0,248,,,,147128403,121854818,121564109,147865345,0,DRX170138,DRS185501,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.89106,,0.07081,,0.89286,,0.5935,,283,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
287,DRR179611,DRX170137,DRS185500,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin melanophore 01,SAMD00172014,,sample name:Zebrafish pigment cell 01|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172014,DRX170137,Zebrafish fin melanophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>215</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172014,,,,282446840.0,1311431.0,DRR179611,0:215.37,A:74927237;C:66575483;G:66161471;T:74782649;N:0,215,,,,74927237,66575483,66161471,74782649,0,DRX170137,DRS185500,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.85938,,0.0335,,0.89248,,0.58813,,274,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
5795,ERR1698352,ERX1767860,ERS1417534,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 012 up 058 12,SAMEA4518355,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518355|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 012 up 058 12|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 012 up 058 12|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 012 up 058 12 s,IonXpressRNA 012 up 058 12 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_012_up_058_12.fastq.gz,fastq,2535299006.0,33956077.0,E MTAB 5173:IonXpressRNA 012 up 058 12,0:74.66,A:719061985;C:581906269;G:579932234;T:654398518;N:0,74,,,,719061985,581906269,579932234,654398518,0,ERX1767860,ERS1417534,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.7343,,0.34119,,0.7359,,0.48406,,66,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5796,ERR1698351,ERX1767859,ERS1417533,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 011 up 058 11,SAMEA4518354,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518354|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 011 up 058 11|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 011 up 058 11|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 011 up 058 11 s,IonXpressRNA 011 up 058 11 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_011_up_058_11.fastq.gz,fastq,3400774471.0,38709756.0,E MTAB 5173:IonXpressRNA 011 up 058 11,0:87.85,A:948991439;C:793389977;G:792539547;T:865853508;N:0,87,,,,948991439,793389977,792539547,865853508,0,ERX1767859,ERS1417533,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.63968,,0.27033,,0.75213,,0.47966,,139,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5797,ERR1698350,ERX1767858,ERS1417532,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 010 up 058 10,SAMEA4518353,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518353|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 010 up 058 10|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 010 up 058 10|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 010 up 058 10 s,IonXpressRNA 010 up 058 10 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_010_up_058_10.fastq.gz,fastq,3502667998.0,39204781.0,E MTAB 5173:IonXpressRNA 010 up 058 10,0:89.34,A:976977303;C:803330255;G:808731995;T:913628445;N:0,89,,,,976977303,803330255,808731995,913628445,0,ERX1767858,ERS1417532,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.65846,,0.2815,,0.74028,,0.47784,,86,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5798,ERR1698349,ERX1767857,ERS1417531,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 009 up 058 9,SAMEA4518352,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518352|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 009 up 058 9|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 009 up 058 9|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 009 up 058 9 s,IonXpressRNA 009 up 058 9 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_009_up_058_9.fastq.gz,fastq,3575088264.0,39745481.0,E MTAB 5173:IonXpressRNA 009 up 058 9,0:89.95,A:1011474126;C:809896078;G:807471974;T:946246086;N:0,89,,,,1011474126,809896078,807471974,946246086,0,ERX1767857,ERS1417531,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.65266,,0.30274,,0.75286,,0.48527,,94,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5799,ERR1698348,ERX1767856,ERS1417530,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 008 up 058 8,SAMEA4518351,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518351|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 008 up 058 8|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 008 up 058 8|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 008 up 058 8 s,IonXpressRNA 008 up 058 8 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_008_up_058_8.fastq.gz,fastq,3259710114.0,38530802.0,E MTAB 5173:IonXpressRNA 008 up 058 8,0:84.60,A:916053004;C:755694888;G:751125332;T:836836890;N:0,84,,,,916053004,755694888,751125332,836836890,0,ERX1767856,ERS1417530,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.70995,,0.31365,,0.74781,,0.48846,,61,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5800,ERR1698347,ERX1767855,ERS1417529,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 007 up 058 7,SAMEA4518350,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518350|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 007 up 058 7|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 007 up 058 7|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 007 up 058 7 s,IonXpressRNA 007 up 058 7 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_007_up_058_7.fastq.gz,fastq,2307842164.0,28984666.0,E MTAB 5173:IonXpressRNA 007 up 058 7,0:79.62,A:634041732;C:548565089;G:545418985;T:579816358;N:0,79,,,,634041732,548565089,545418985,579816358,0,ERX1767855,ERS1417529,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.67542,,0.2817,,0.74168,,0.47224,,37,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5801,ERR1698346,ERX1767854,ERS1417528,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 006 up 058 6,SAMEA4518349,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518349|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 006 up 058 6|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 006 up 058 6|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 006 up 058 6 s,IonXpressRNA 006 up 058 6 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_006_up_058_6.fastq.gz,fastq,2239484857.0,27021234.0,E MTAB 5173:IonXpressRNA 006 up 058 6,0:82.88,A:637326624;C:506830056;G:503508207;T:591819970;N:0,82,,,,637326624,506830056,503508207,591819970,0,ERX1767854,ERS1417528,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.66441,,0.31904,,0.74905,,0.47154,,122,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5802,ERR1698345,ERX1767853,ERS1417527,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 005 up 058 5,SAMEA4518348,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518348|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 005 up 058 5|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 005 up 058 5|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 005 up 058 5 s,IonXpressRNA 005 up 058 5 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_005_up_058_5.fastq.gz,fastq,2920608487.0,39573075.0,E MTAB 5173:IonXpressRNA 005 up 058 5,0:73.80,A:814851327;C:678116994;G:691911192;T:735728974;N:0,73,,,,814851327,678116994,691911192,735728974,0,ERX1767853,ERS1417527,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.60005,,0.25542,,0.76481,,0.4886,,12,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5803,ERR1698344,ERX1767852,ERS1417526,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 004 up 058 4,SAMEA4518347,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518347|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 004 up 058 4|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 004 up 058 4|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 004 up 058 4 s,IonXpressRNA 004 up 058 4 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_004_up_058_4.fastq.gz,fastq,2989727396.0,37953454.0,E MTAB 5173:IonXpressRNA 004 up 058 4,0:78.77,A:802963810;C:722434772;G:742850530;T:721478284;N:0,78,,,,802963810,722434772,742850530,721478284,0,ERX1767852,ERS1417526,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.76402,,0.32503,,0.74241,,0.4815,,128,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5804,ERR1698343,ERX1767851,ERS1417525,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 003 up 058 3,SAMEA4518346,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518346|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 003 up 058 3|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 003 up 058 3|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 003 up 058 3 s,IonXpressRNA 003 up 058 3 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_003_up_058_3.fastq.gz,fastq,4068383115.0,41996847.0,E MTAB 5173:IonXpressRNA 003 up 058 3,0:96.87,A:1133167706;C:944306379;G:948626944;T:1042282086;N:0,96,,,,1133167706,944306379,948626944,1042282086,0,ERX1767851,ERS1417525,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.54804,,0.22334,,0.76353,,0.49163,,93,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5805,ERR1698342,ERX1767850,ERS1417524,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 002 up 058 2,SAMEA4518345,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518345|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 002 up 058 2|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 002 up 058 2|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 002 up 058 2 s,IonXpressRNA 002 up 058 2 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_002_up_058_2.fastq.gz,fastq,2679963893.0,33552723.0,E MTAB 5173:IonXpressRNA 002 up 058 2,0:79.87,A:709092431;C:635329399;G:670478210;T:665063853;N:0,79,,,,709092431,635329399,670478210,665063853,0,ERX1767850,ERS1417524,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.43283,,0.18649,,0.81178,,0.52885,,116,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5806,ERR1698341,ERX1767849,ERS1417523,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 001 up 058 1,SAMEA4518344,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518344|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 001 up 058 1|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 001 up 058 1|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 001 up 058 1 s,IonXpressRNA 001 up 058 1 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_001_up_058_1.fastq.gz,fastq,3358902499.0,39857024.0,E MTAB 5173:IonXpressRNA 001 up 058 1,0:84.27,A:933405205;C:784111716;G:780404241;T:860981337;N:0,84,,,,933405205,784111716,780404241,860981337,0,ERX1767849,ERS1417523,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.71789,,0.33159,,0.76619,,0.514,,56,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
33439,SRR30280831,SRX25741613,SRS22381131,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 10,BP10# DMSO 3,,strain:TU|isolate:90|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 10,BP10# DMSO 3,BP10# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-3.fastq.gz,fastq,92459659.0,929177.0,BP10# DMSO 3.fastq.gz,0:99.51,A:21511804;C:24897124;G:24440562;T:21610169;N:0,99,,,,21511804,24897124,24440562,21610169,0,SRX25741613,SRS22381131,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33440,SRR30280704,SRX25741612,SRS22381130,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 9,BP10# DMSO 2,,strain:TU|isolate:89|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 9,BP10# DMSO 2,BP10# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-2.fastq.gz,fastq,184067375.0,1813659.0,BP10# DMSO 2.fastq.gz,0:101.49,A:43014934;C:49110340;G:48560159;T:43381942;N:0,101,,,,43014934,49110340,48560159,43381942,0,SRX25741612,SRS22381130,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33441,SRR30280705,SRX25741611,SRS22381129,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 8,BP10# DMSO 1,,strain:TU|isolate:88|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 8,BP10# DMSO 1,BP10# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-1.fastq.gz,fastq,148237805.0,1464542.0,BP10# DMSO 1.fastq.gz,0:101.22,A:34729919;C:39397602;G:39251519;T:34858765;N:0,101,,,,34729919,39397602,39251519,34858765,0,SRX25741611,SRS22381129,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33442,SRR30280706,SRX25741610,SRS22381128,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 7,BP10# 7,,strain:TU|isolate:87|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 7,BP10# 7,BP10# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-7.fastq.gz,fastq,164490060.0,1636480.0,BP10# 7.fastq.gz,0:100.51,A:38838318;C:43438465;G:43456970;T:38756307;N:0,100,,,,38838318,43438465,43456970,38756307,0,SRX25741610,SRS22381128,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33443,SRR30280707,SRX25741609,SRS22381127,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 6,BP10# 6,,strain:TU|isolate:86|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 6,BP10# 6,BP10# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-6.fastq.gz,fastq,155194512.0,1505703.0,BP10# 6.fastq.gz,0:103.07,A:36677853;C:40887150;G:40906247;T:36723262;N:0,103,,,,36677853,40887150,40906247,36723262,0,SRX25741609,SRS22381127,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33444,SRR30280708,SRX25741608,SRS22381126,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 5,BP10# 5,,strain:TU|isolate:85|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 5,BP10# 5,BP10# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-5.fastq.gz,fastq,163104451.0,1593080.0,BP10# 5.fastq.gz,0:102.38,A:38629973;C:43080977;G:42996215;T:38397286;N:0,102,,,,38629973,43080977,42996215,38397286,0,SRX25741608,SRS22381126,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33445,SRR30280709,SRX25741607,SRS22381125,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 4,BP10# 4,,strain:TU|isolate:84|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 4,BP10# 4,BP10# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-4.fastq.gz,fastq,141101402.0,1409537.0,BP10# 4.fastq.gz,0:100.10,A:33334876;C:37175155;G:37298446;T:33292925;N:0,100,,,,33334876,37175155,37298446,33292925,0,SRX25741607,SRS22381125,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33446,SRR30280710,SRX25741606,SRS22381124,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 3,BP10# 3,,strain:TU|isolate:83|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 3,BP10# 3,BP10# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-3.fastq.gz,fastq,156294355.0,1507427.0,BP10# 3.fastq.gz,0:103.68,A:36910418;C:41342273;G:41169658;T:36872006;N:0,103,,,,36910418,41342273,41169658,36872006,0,SRX25741606,SRS22381124,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33447,SRR30280711,SRX25741605,SRS22381123,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 2,BP10# 2,,strain:TU|isolate:82|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 2,BP10# 2,BP10# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-2.fastq.gz,fastq,111628166.0,1080707.0,BP10# 2.fastq.gz,0:103.29,A:26410755;C:29627534;G:29253738;T:26336139;N:0,103,,,,26410755,29627534,29253738,26336139,0,SRX25741605,SRS22381123,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33448,SRR30280712,SRX25741604,SRS22381122,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 1,BP10# 1,,strain:TU|isolate:81|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 1,BP10# 1,BP10# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-1.fastq.gz,fastq,143973283.0,1411136.0,BP10# 1.fastq.gz,0:102.03,A:34301322;C:37717275;G:37805886;T:34148800;N:0,102,,,,34301322,37717275,37805886,34148800,0,SRX25741604,SRS22381122,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33449,SRR30280713,SRX25741603,SRS22381120,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 9,BP2# DMSO 2,,strain:TU|isolate:9|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 9,BP2# DMSO 2,BP2# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-2.fastq.gz,fastq,121679118.0,1146532.0,BP2# DMSO 2.fastq.gz,0:106.13,A:28957172;C:31903260;G:31955173;T:28863513;N:0,106,,,,28957172,31903260,31955173,28863513,0,SRX25741603,SRS22381120,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33450,SRR30280714,SRX25741602,SRS22381121,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 10,BP8# DMSO 3,,strain:TU|isolate:80|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 10,BP8# DMSO 3,BP8# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-3.fastq.gz,fastq,116509377.0,1201618.0,BP8# DMSO 3.fastq.gz,0:96.96,A:27076619;C:31149115;G:31146213;T:27137430;N:0,96,,,,27076619,31149115,31146213,27137430,0,SRX25741602,SRS22381121,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33451,SRR30280715,SRX25741601,SRS22381119,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 9,BP8# DMSO 2,,strain:TU|isolate:79|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 9,BP8# DMSO 2,BP8# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-2.fastq.gz,fastq,126980560.0,1245267.0,BP8# DMSO 2.fastq.gz,0:101.97,A:30148136;C:33803559;G:33492078;T:29536787;N:0,101,,,,30148136,33803559,33492078,29536787,0,SRX25741601,SRS22381119,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33452,SRR30280716,SRX25741600,SRS22381118,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 8,BP8# DMSO 1,,strain:TU|isolate:78|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 8,BP8# DMSO 1,BP8# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-1.fastq.gz,fastq,123397953.0,1167071.0,BP8# DMSO 1.fastq.gz,0:105.73,A:28979230;C:32683758;G:32531951;T:29203014;N:0,105,,,,28979230,32683758,32531951,29203014,0,SRX25741600,SRS22381118,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33453,SRR30280717,SRX25741599,SRS22381117,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 7,BP8# 7,,strain:TU|isolate:77|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 7,BP8# 7,BP8# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-7.fastq.gz,fastq,117872895.0,1119299.0,BP8# 7.fastq.gz,0:105.31,A:27851183;C:31344900;G:30718485;T:27958327;N:0,105,,,,27851183,31344900,30718485,27958327,0,SRX25741599,SRS22381117,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33454,SRR30280718,SRX25741598,SRS22381116,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 6,BP8# 6,,strain:TU|isolate:76|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 6,BP8# 6,BP8# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-6.fastq.gz,fastq,111957625.0,1071866.0,BP8# 6.fastq.gz,0:104.45,A:26648862;C:29449571;G:29516510;T:26342682;N:0,104,,,,26648862,29449571,29516510,26342682,0,SRX25741598,SRS22381116,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33455,SRR30280719,SRX25741597,SRS22381115,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 5,BP8# 5,,strain:TU|isolate:75|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 5,BP8# 5,BP8# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-5.fastq.gz,fastq,126372290.0,1210093.0,BP8# 5.fastq.gz,0:104.43,A:30062430;C:33314558;G:33069100;T:29926202;N:0,104,,,,30062430,33314558,33069100,29926202,0,SRX25741597,SRS22381115,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33456,SRR30280720,SRX25741596,SRS22381114,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 4,BP8# 4,,strain:TU|isolate:74|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 4,BP8# 4,BP8# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-4.fastq.gz,fastq,128721856.0,1239512.0,BP8# 4.fastq.gz,0:103.85,A:30267273;C:34185892;G:33688377;T:30580314;N:0,103,,,,30267273,34185892,33688377,30580314,0,SRX25741596,SRS22381114,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33457,SRR30280721,SRX25741595,SRS22381113,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 3,BP8# 3,,strain:TU|isolate:73|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 3,BP8# 3,BP8# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-3.fastq.gz,fastq,128200329.0,1234995.0,BP8# 3.fastq.gz,0:103.81,A:30417908;C:33785230;G:33670842;T:30326349;N:0,103,,,,30417908,33785230,33670842,30326349,0,SRX25741595,SRS22381113,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33458,SRR30280722,SRX25741594,SRS22381112,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 2,BP8# 2,,strain:TU|isolate:72|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 2,BP8# 2,BP8# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-2.fastq.gz,fastq,99353699.0,947145.0,BP8# 2.fastq.gz,0:104.90,A:23560131;C:26008128;G:26310676;T:23474764;N:0,104,,,,23560131,26008128,26310676,23474764,0,SRX25741594,SRS22381112,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33459,SRR30280723,SRX25741593,SRS22381111,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 1,BP8# 1,,strain:TU|isolate:71|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 1,BP8# 1,BP8# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-1.fastq.gz,fastq,101253709.0,974909.0,BP8# 1.fastq.gz,0:103.86,A:24014647;C:26648401;G:26749516;T:23841145;N:0,103,,,,24014647,26648401,26749516,23841145,0,SRX25741593,SRS22381111,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33460,SRR30280724,SRX25741592,SRS22381110,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 8,BP2# DMSO 1,,strain:TU|isolate:8|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 8,BP2# DMSO 1,BP2# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-1.fastq.gz,fastq,54970926.0,518074.0,BP2# DMSO 1.fastq.gz,0:106.11,A:13057581;C:14507897;G:14456016;T:12949432;N:0,106,,,,13057581,14507897,14456016,12949432,0,SRX25741592,SRS22381110,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33461,SRR30280725,SRX25741591,SRS22381109,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 10,BP7# DMSO 3,,strain:TU|isolate:70|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 10,BP7# DMSO 3,BP7# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-3.fastq.gz,fastq,123214657.0,1237962.0,BP7# DMSO 3.fastq.gz,0:99.53,A:28785213;C:32846077;G:32681550;T:28901817;N:0,99,,,,28785213,32846077,32681550,28901817,0,SRX25741591,SRS22381109,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33462,SRR30280726,SRX25741590,SRS22381108,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 9,BP7# DMSO 2,,strain:TU|isolate:69|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 9,BP7# DMSO 2,BP7# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-2.fastq.gz,fastq,41215713.0,423271.0,BP7# DMSO 2.fastq.gz,0:97.37,A:9589570;C:11133557;G:10895490;T:9597096;N:0,97,,,,9589570,11133557,10895490,9597096,0,SRX25741590,SRS22381108,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33463,SRR30280727,SRX25741589,SRS22381107,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 8,BP7# DMSO 1,,strain:TU|isolate:68|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 8,BP7# DMSO 1,BP7# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-1.fastq.gz,fastq,250009982.0,2396988.0,BP7# DMSO 1.fastq.gz,0:104.30,A:59211578;C:66112203;G:65641188;T:59045013;N:0,104,,,,59211578,66112203,65641188,59045013,0,SRX25741589,SRS22381107,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33464,SRR30280728,SRX25741588,SRS22381106,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 7,BP7# 7,,strain:TU|isolate:67|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 7,BP7# 7,BP7# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-7.fastq.gz,fastq,44725970.0,423428.0,BP7# 7.fastq.gz,0:105.63,A:10573402;C:11833576;G:11724776;T:10594216;N:0,105,,,,10573402,11833576,11724776,10594216,0,SRX25741588,SRS22381106,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33465,SRR30280729,SRX25741587,SRS22381105,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 6,BP7# 6,,strain:TU|isolate:66|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 6,BP7# 6,BP7# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-6.fastq.gz,fastq,145545693.0,1385533.0,BP7# 6.fastq.gz,0:105.05,A:34431733;C:38602041;G:38257359;T:34254560;N:0,105,,,,34431733,38602041,38257359,34254560,0,SRX25741587,SRS22381105,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33466,SRR30280730,SRX25741586,SRS22381104,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 5,BP7# 5,,strain:TU|isolate:65|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 5,BP7# 5,BP7# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-5.fastq.gz,fastq,178532872.0,1748047.0,BP7# 5.fastq.gz,0:102.13,A:42591575;C:46798657;G:46820438;T:42322202;N:0,102,,,,42591575,46798657,46820438,42322202,0,SRX25741586,SRS22381104,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33467,SRR30280731,SRX25741585,SRS22381103,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 4,BP7# 4,,strain:TU|isolate:64|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 4,BP7# 4,BP7# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-4.fastq.gz,fastq,59046400.0,556476.0,BP7# 4.fastq.gz,0:106.11,A:14036205;C:15600456;G:15470219;T:13939520;N:0,106,,,,14036205,15600456,15470219,13939520,0,SRX25741585,SRS22381103,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33468,SRR30280732,SRX25741584,SRS22381102,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 3,BP7# 3,,strain:TU|isolate:63|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 3,BP7# 3,BP7# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-3.fastq.gz,fastq,167725955.0,1635470.0,BP7# 3.fastq.gz,0:102.56,A:39786240;C:44180010;G:44154342;T:39605363;N:0,102,,,,39786240,44180010,44154342,39605363,0,SRX25741584,SRS22381102,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33469,SRR30280733,SRX25741583,SRS22381101,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 2,BP7# 2,,strain:TU|isolate:62|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 2,BP7# 2,BP7# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-2.fastq.gz,fastq,160305207.0,1553984.0,BP7# 2.fastq.gz,0:103.16,A:38057812;C:42240658;G:42101188;T:37905549;N:0,103,,,,38057812,42240658,42101188,37905549,0,SRX25741583,SRS22381101,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33470,SRR30280734,SRX25741582,SRS22381100,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 1,BP7# 1,,strain:TU|isolate:61|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 1,BP7# 1,BP7# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-1.fastq.gz,fastq,170723714.0,1640146.0,BP7# 1.fastq.gz,0:104.09,A:40492006;C:45082123;G:44790747;T:40358838;N:0,104,,,,40492006,45082123,44790747,40358838,0,SRX25741582,SRS22381100,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33471,SRR30280735,SRX25741581,SRS22381099,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 7,BP2# 7,,strain:TU|isolate:7|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 7,BP2# 7,BP2# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-7.fastq.gz,fastq,38882822.0,376278.0,BP2# 7.fastq.gz,0:103.34,A:9199994;C:10348494;G:10211553;T:9122781;N:0,103,,,,9199994,10348494,10211553,9122781,0,SRX25741581,SRS22381099,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33472,SRR30280736,SRX25741580,SRS22381098,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 10,BP6# DMSO 3,,strain:TU|isolate:60|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 10,BP6# DMSO 3,BP6# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-DMSO-3.fastq.gz,fastq,168637726.0,1697190.0,BP6# DMSO 3.fastq.gz,0:99.36,A:39372962;C:45045318;G:44821656;T:39397790;N:0,99,,,,39372962,45045318,44821656,39397790,0,SRX25741580,SRS22381098,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33473,SRR30280737,SRX25741579,SRS22381097,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 9,BP6# DMSO 2,,strain:TU|isolate:59|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 9,BP6# DMSO 2,BP6# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-DMSO-2.fastq.gz,fastq,84169374.0,885774.0,BP6# DMSO 2.fastq.gz,0:95.02,A:19595849;C:22311196;G:22786761;T:19475568;N:0,95,,,,19595849,22311196,22786761,19475568,0,SRX25741579,SRS22381097,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33474,SRR30280738,SRX25741578,SRS22381096,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 8,BP6# DMSO 1,,strain:TU|isolate:58|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 8,BP6# DMSO 1,BP6# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-DMSO-1.fastq.gz,fastq,62914420.0,598585.0,BP6# DMSO 1.fastq.gz,0:105.11,A:14828390;C:16725889;G:16466687;T:14893454;N:0,105,,,,14828390,16725889,16466687,14893454,0,SRX25741578,SRS22381096,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33475,SRR30280739,SRX25741577,SRS22381095,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 7,BP6# 7,,strain:TU|isolate:57|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 7,BP6# 7,BP6# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-7.fastq.gz,fastq,57364216.0,554366.0,BP6# 7.fastq.gz,0:103.48,A:13557873;C:15204286;G:15249012;T:13353045;N:0,103,,,,13557873,15204286,15249012,13353045,0,SRX25741577,SRS22381095,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33476,SRR30280740,SRX25741576,SRS22381094,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 6,BP6# 6,,strain:TU|isolate:56|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 6,BP6# 6,BP6# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-6.fastq.gz,fastq,71062843.0,690536.0,BP6# 6.fastq.gz,0:102.91,A:16797854;C:18816496;G:18773789;T:16674704;N:0,102,,,,16797854,18816496,18773789,16674704,0,SRX25741576,SRS22381094,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33477,SRR30280741,SRX25741575,SRS22381093,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 5,BP6# 5,,strain:TU|isolate:55|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 5,BP6# 5,BP6# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-5.fastq.gz,fastq,388324559.0,3662531.0,BP6# 5.fastq.gz,0:106.03,A:91880623;C:102595870;G:102276868;T:91571198;N:0,106,,,,91880623,102595870,102276868,91571198,0,SRX25741575,SRS22381093,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33478,SRR30280742,SRX25741574,SRS22381092,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 4,BP6# 4,,strain:TU|isolate:54|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 4,BP6# 4,BP6# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-4.fastq.gz,fastq,53969235.0,528607.0,BP6# 4.fastq.gz,0:102.10,A:12709612;C:14307567;G:14331038;T:12621018;N:0,102,,,,12709612,14307567,14331038,12621018,0,SRX25741574,SRS22381092,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33479,SRR30280743,SRX25741573,SRS22381091,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 3,BP6# 3,,strain:TU|isolate:53|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 3,BP6# 3,BP6# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-3.fastq.gz,fastq,459563075.0,4338540.0,BP6# 3.fastq.gz,0:105.93,A:109287374;C:121502158;G:121023009;T:107750534;N:0,105,,,,109287374,121502158,121023009,107750534,0,SRX25741573,SRS22381091,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33480,SRR30280744,SRX25741572,SRS22381090,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 2,BP6# 2,,strain:TU|isolate:52|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 2,BP6# 2,BP6# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-2.fastq.gz,fastq,71041410.0,672229.0,BP6# 2.fastq.gz,0:105.68,A:16754424;C:18821001;G:18671023;T:16794962;N:0,105,,,,16754424,18821001,18671023,16794962,0,SRX25741572,SRS22381090,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33481,SRR30280745,SRX25741571,SRS22381089,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 1,BP6# 1,,strain:TU|isolate:51|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 1,BP6# 1,BP6# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-1.fastq.gz,fastq,80894902.0,777427.0,BP6# 1.fastq.gz,0:104.05,A:19045795;C:21492943;G:21345360;T:19010804;N:0,104,,,,19045795,21492943,21345360,19010804,0,SRX25741571,SRS22381089,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33482,SRR30280746,SRX25741570,SRS22381088,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 6,BP2# 6,,strain:TU|isolate:6|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 6,BP2# 6,BP2# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-6.fastq.gz,fastq,41107063.0,387968.0,BP2# 6.fastq.gz,0:105.95,A:9745763;C:10874420;G:10753007;T:9733873;N:0,105,,,,9745763,10874420,10753007,9733873,0,SRX25741570,SRS22381088,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33483,SRR30280747,SRX25741569,SRS22381087,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 10,BP5# DMSO 3,,strain:TU|isolate:50|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 10,BP5# DMSO 3,BP5# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-DMSO-3.fastq.gz,fastq,69830864.0,722424.0,BP5# DMSO 3.fastq.gz,0:96.66,A:16195315;C:18820158;G:18512005;T:16303386;N:0,96,,,,16195315,18820158,18512005,16303386,0,SRX25741569,SRS22381087,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33484,SRR30280748,SRX25741568,SRS22381086,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 9,BP5# DMSO 2,,strain:TU|isolate:49|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 9,BP5# DMSO 2,BP5# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-DMSO-2.fastq.gz,fastq,164930364.0,1712837.0,BP5# DMSO 2.fastq.gz,0:96.29,A:38256270;C:44329270;G:44181612;T:38163212;N:0,96,,,,38256270,44329270,44181612,38163212,0,SRX25741568,SRS22381086,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33485,SRR30280749,SRX25741567,SRS22381085,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 8,BP5# DMSO 1,,strain:TU|isolate:48|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 8,BP5# DMSO 1,BP5# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-DMSO-1.fastq.gz,fastq,181332852.0,1769396.0,BP5# DMSO 1.fastq.gz,0:102.48,A:43111149;C:47723124;G:47703716;T:42794863;N:0,102,,,,43111149,47723124,47703716,42794863,0,SRX25741567,SRS22381085,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33486,SRR30280750,SRX25741566,SRS22381084,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 7,BP5# 7,,strain:TU|isolate:47|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 7,BP5# 7,BP5# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-7.fastq.gz,fastq,156354483.0,1499782.0,BP5# 7.fastq.gz,0:104.25,A:37138190;C:41308272;G:40976578;T:36931443;N:0,104,,,,37138190,41308272,40976578,36931443,0,SRX25741566,SRS22381084,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33487,SRR30280751,SRX25741565,SRS22381083,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 6,BP5# 6,,strain:TU|isolate:46|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 6,BP5# 6,BP5# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-6.fastq.gz,fastq,173968738.0,1651137.0,BP5# 6.fastq.gz,0:105.36,A:41303240;C:45813867;G:45637169;T:41214462;N:0,105,,,,41303240,45813867,45637169,41214462,0,SRX25741565,SRS22381083,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33488,SRR30280752,SRX25741564,SRS22381082,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 5,BP5# 5,,strain:TU|isolate:45|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 5,BP5# 5,BP5# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-5.fastq.gz,fastq,159018875.0,1527111.0,BP5# 5.fastq.gz,0:104.13,A:37684248;C:41887152;G:41787315;T:37660160;N:0,104,,,,37684248,41887152,41787315,37660160,0,SRX25741564,SRS22381082,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33489,SRR30280753,SRX25741563,SRS22381081,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 4,BP5# 4,,strain:TU|isolate:44|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 4,BP5# 4,BP5# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-4.fastq.gz,fastq,172581316.0,1672193.0,BP5# 4.fastq.gz,0:103.21,A:40735879;C:45609457;G:45531283;T:40704697;N:0,103,,,,40735879,45609457,45531283,40704697,0,SRX25741563,SRS22381081,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33490,SRR30280754,SRX25741562,SRS22381080,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 3,BP5# 3,,strain:TU|isolate:43|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 3,BP5# 3,BP5# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-3.fastq.gz,fastq,194293989.0,1881466.0,BP5# 3.fastq.gz,0:103.27,A:45699763;C:51658251;G:51051270;T:45884705;N:0,103,,,,45699763,51658251,51051270,45884705,0,SRX25741562,SRS22381080,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33491,SRR30280755,SRX25741561,SRS22381079,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 2,BP5# 2,,strain:TU|isolate:42|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 2,BP5# 2,BP5# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-2.fastq.gz,fastq,169428376.0,1621727.0,BP5# 2.fastq.gz,0:104.47,A:40092975;C:44761119;G:44430155;T:40144127;N:0,104,,,,40092975,44761119,44430155,40144127,0,SRX25741561,SRS22381079,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33492,SRR30280756,SRX25741560,SRS22381078,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 1,BP5# 1,,strain:TU|isolate:41|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 1,BP5# 1,BP5# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-1.fastq.gz,fastq,144606960.0,1448818.0,BP5# 1.fastq.gz,0:99.81,A:34224454;C:38193289;G:38174848;T:34014369;N:0,99,,,,34224454,38193289,38174848,34014369,0,SRX25741560,SRS22381078,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33493,SRR30280757,SRX25741559,SRS22381077,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 5,BP2# 5,,strain:TU|isolate:5|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 5,BP2# 5,BP2# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-5.fastq.gz,fastq,54004345.0,528826.0,BP2# 5.fastq.gz,0:102.12,A:12647240;C:14354167;G:14231898;T:12771040;N:0,102,,,,12647240,14354167,14231898,12771040,0,SRX25741559,SRS22381077,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33494,SRR30280758,SRX25741558,SRS22381076,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 10,BP4# DMSO 3,,strain:TU|isolate:40|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 10,BP4# DMSO 3,BP4# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-DMSO-3.fastq.gz,fastq,36465434.0,372286.0,BP4# DMSO 3.fastq.gz,0:97.95,A:8490297;C:9790740;G:9683118;T:8501279;N:0,97,,,,8490297,9790740,9683118,8501279,0,SRX25741558,SRS22381076,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33495,SRR30280759,SRX25741557,SRS22381075,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 9,BP4# DMSO 2,,strain:TU|isolate:39|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 9,BP4# DMSO 2,BP4# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-DMSO-2.fastq.gz,fastq,93830164.0,961498.0,BP4# DMSO 2.fastq.gz,0:97.59,A:21868926;C:25159102;G:25064131;T:21738005;N:0,97,,,,21868926,25159102,25064131,21738005,0,SRX25741557,SRS22381075,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33496,SRR30280760,SRX25741556,SRS22381074,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 8,BP4# DMSO 1,,strain:TU|isolate:38|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 8,BP4# DMSO 1,BP4# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-DMSO-1.fastq.gz,fastq,207441996.0,2016339.0,BP4# DMSO 1.fastq.gz,0:102.88,A:48915341;C:54837085;G:54776415;T:48913155;N:0,102,,,,48915341,54837085,54776415,48913155,0,SRX25741556,SRS22381074,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33497,SRR30280761,SRX25741555,SRS22381073,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 7,BP4# 7,,strain:TU|isolate:37|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 7,BP4# 7,BP4# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-7.fastq.gz,fastq,255678685.0,2484772.0,BP4# 7.fastq.gz,0:102.90,A:60397868;C:67633446;G:67278186;T:60369185;N:0,102,,,,60397868,67633446,67278186,60369185,0,SRX25741555,SRS22381073,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33498,SRR30280762,SRX25741554,SRS22381072,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 6,BP4# 6,,strain:TU|isolate:36|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 6,BP4# 6,BP4# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-6.fastq.gz,fastq,188125535.0,1822074.0,BP4# 6.fastq.gz,0:103.25,A:44693539;C:49396733;G:49369506;T:44665757;N:0,103,,,,44693539,49396733,49369506,44665757,0,SRX25741554,SRS22381072,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33499,SRR30280763,SRX25741553,SRS22381071,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 5,BP4# 5,,strain:TU|isolate:35|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 5,BP4# 5,BP4# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-5.fastq.gz,fastq,196156699.0,1945323.0,BP4# 5.fastq.gz,0:100.84,A:46353674;C:51900251;G:51633045;T:46269729;N:0,100,,,,46353674,51900251,51633045,46269729,0,SRX25741553,SRS22381071,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33500,SRR30280764,SRX25741552,SRS22381070,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 4,BP4# 4,,strain:TU|isolate:34|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 4,BP4# 4,BP4# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-4.fastq.gz,fastq,208993750.0,2025321.0,BP4# 4.fastq.gz,0:103.19,A:49362077;C:55404157;G:54798534;T:49428982;N:0,103,,,,49362077,55404157,54798534,49428982,0,SRX25741552,SRS22381070,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33501,SRR30280765,SRX25741551,SRS22381069,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 3,BP4# 3,,strain:TU|isolate:33|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 3,BP4# 3,BP4# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-3.fastq.gz,fastq,202784927.0,1991949.0,BP4# 3.fastq.gz,0:101.80,A:47939013;C:53597649;G:53349661;T:47898604;N:0,101,,,,47939013,53597649,53349661,47898604,0,SRX25741551,SRS22381069,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33502,SRR30280766,SRX25741550,SRS22381068,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 2,BP4# 2,,strain:TU|isolate:32|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 2,BP4# 2,BP4# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-2.fastq.gz,fastq,219988278.0,2234932.0,BP4# 2.fastq.gz,0:98.43,A:51797569;C:58514113;G:57965852;T:51710744;N:0,98,,,,51797569,58514113,57965852,51710744,0,SRX25741550,SRS22381068,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33503,SRR30280767,SRX25741549,SRS22381067,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 1,BP4# 1,,strain:TU|isolate:31|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 1,BP4# 1,BP4# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-1.fastq.gz,fastq,189677795.0,1882057.0,BP4# 1.fastq.gz,0:100.78,A:44788971;C:50182800;G:49981443;T:44724581;N:0,100,,,,44788971,50182800,49981443,44724581,0,SRX25741549,SRS22381067,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33504,SRR30280768,SRX25741548,SRS22381066,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 4,BP2# 4,,strain:TU|isolate:4|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 4,BP2# 4,BP2# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-4.fastq.gz,fastq,53747760.0,507303.0,BP2# 4.fastq.gz,0:105.95,A:12684975;C:14194468;G:14128107;T:12740210;N:0,105,,,,12684975,14194468,14128107,12740210,0,SRX25741548,SRS22381066,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33505,SRR30280769,SRX25741547,SRS22381065,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 10,BP3# DMSO 3,,strain:TU|isolate:30|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 10,BP3# DMSO 3,BP3# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-DMSO-3.fastq.gz,fastq,116330587.0,1173601.0,BP3# DMSO 3.fastq.gz,0:99.12,A:27347180;C:30698198;G:31018076;T:27267133;N:0,99,,,,27347180,30698198,31018076,27267133,0,SRX25741547,SRS22381065,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33506,SRR30280770,SRX25741546,SRS22381064,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 9,BP3# DMSO 2,,strain:TU|isolate:29|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 9,BP3# DMSO 2,BP3# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-DMSO-2.fastq.gz,fastq,73519676.0,743634.0,BP3# DMSO 2.fastq.gz,0:98.87,A:17229747;C:19443112;G:19611469;T:17235348;N:0,98,,,,17229747,19443112,19611469,17235348,0,SRX25741546,SRS22381064,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33507,SRR30280771,SRX25741545,SRS22381063,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 8,BP3# DMSO 1,,strain:TU|isolate:28|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 8,BP3# DMSO 1,BP3# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-DMSO-1.fastq.gz,fastq,255347833.0,2401083.0,BP3# DMSO 1.fastq.gz,0:106.35,A:61082865;C:67174427;G:66429786;T:60660755;N:0,106,,,,61082865,67174427,66429786,60660755,0,SRX25741545,SRS22381063,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33508,SRR30280772,SRX25741544,SRS22381062,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 7,BP3# 7,,strain:TU|isolate:27|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 7,BP3# 7,BP3# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-7.fastq.gz,fastq,58605409.0,547138.0,BP3# 7.fastq.gz,0:107.11,A:13947433;C:15493000;G:15274166;T:13890810;N:0,107,,,,13947433,15493000,15274166,13890810,0,SRX25741544,SRS22381062,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33509,SRR30280773,SRX25741543,SRS22381061,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 6,BP3# 6,,strain:TU|isolate:26|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 6,BP3# 6,BP3# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-6.fastq.gz,fastq,72949772.0,686281.0,BP3# 6.fastq.gz,0:106.30,A:17339914;C:19406958;G:19027530;T:17175370;N:0,106,,,,17339914,19406958,19027530,17175370,0,SRX25741543,SRS22381061,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33510,SRR30280774,SRX25741542,SRS22381060,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 5,BP3# 5,,strain:TU|isolate:25|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 5,BP3# 5,BP3# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-5.fastq.gz,fastq,69794152.0,666660.0,BP3# 5.fastq.gz,0:104.69,A:16463075;C:18508422;G:18337018;T:16485637;N:0,104,,,,16463075,18508422,18337018,16485637,0,SRX25741542,SRS22381060,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33511,SRR30280775,SRX25741541,SRS22381059,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 4,BP3# 4,,strain:TU|isolate:24|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 4,BP3# 4,BP3# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-4.fastq.gz,fastq,53721557.0,502232.0,BP3# 4.fastq.gz,0:106.97,A:12820450;C:14258438;G:13986350;T:12656319;N:0,106,,,,12820450,14258438,13986350,12656319,0,SRX25741541,SRS22381059,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33512,SRR30280776,SRX25741540,SRS22381058,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 3,BP3# 3,,strain:TU|isolate:23|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 3,BP3# 3,BP3# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-3.fastq.gz,fastq,69156379.0,652416.0,BP3# 3.fastq.gz,0:106.00,A:16429215;C:18238339;G:18163413;T:16325412;N:0,106,,,,16429215,18238339,18163413,16325412,0,SRX25741540,SRS22381058,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33513,SRR30280777,SRX25741539,SRS22381056,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 2,BP3# 2,,strain:TU|isolate:22|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 2,BP3# 2,BP3# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-2.fastq.gz,fastq,76545028.0,713057.0,BP3# 2.fastq.gz,0:107.35,A:18167303;C:20199043;G:20017499;T:18161183;N:0,107,,,,18167303,20199043,20017499,18161183,0,SRX25741539,SRS22381056,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33514,SRR30280778,SRX25741538,SRS22381057,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 1,BP3# 1,,strain:TU|isolate:21|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 1,BP3# 1,BP3# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-1.fastq.gz,fastq,92675626.0,878172.0,BP3# 1.fastq.gz,0:105.53,A:21857434;C:24661760;G:24166771;T:21989661;N:0,105,,,,21857434,24661760,24166771,21989661,0,SRX25741538,SRS22381057,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures