rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
41815,SRR5230754,SRX2539250,SRS1958964,SRP098895,PRJNA371444,transcriptome analyses of zebrafish preovulatory follicle cells,PRJNA371444,Other,To reveal downstream targets of progesterone receptor Pgr that are important for ovulation  RNA seq analyses were performed on isolated follicle cell samples from individual wild type and Pgr KO fish 3 each. The results revealed over 3000 genes and multiple pathways were significantly different between two genotypes  providing the first resource of genome wide data for investigating Pgr regulated ovulatory genes in basal vertebrate.,,pubmed:28111234,,,zebrafish follicle transcriptome,,strain:Tu|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:female|tissue:ovarian follicle cells|BioSampleModel:Model organism or animal,,,,,,,,,transcriptome of zebrafish preovulatory follicle cells from wt or Pgr knockout lines,C6RD4ANXX,C6RD4ANXX,To understand downstream targets of Pgr during ovulation  RNA SEQ were performed for preovulatory follicle cell samples from three wt and three pgrko fish respectively.,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP098895,,,SL98515.fastq.gz SL98516.fastq.gz SL98517.fastq.gz SL98520.fastq.gz SL98519.fastq.gz SL98518.fastq.gz,fastq fastq fastq fastq fastq fastq,6949746750.0,138994935.0,SL98520.fastq.gz,0:50 1:0,A:1963366768;C:1504124031;G:1501663925;T:1979903691;N:688335,50,0,,,1963366768,1504124031,1501663925,1979903691,688335,SRX2539250,SRS1958964,SRA535744,East Carolina University|Biology,East Carolina University,1,0.88241,,0.58221,,0.71348,,0.48974,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,United States,2017-02-11,Adult,Adult,Gonad,Reproductive System