rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 28470,SRR26253203,SRX21963295,SRS19039869,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 2,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 22|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND2,Small RNA IFND2,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-2.deadaptor.fq.gz,fastq,278362309.0,11056139.0,IFN4 2.deadaptor.fq.gz,0:25.18,A:71944968;C:54562141;G:73333701;T:78511075;N:10424,25,,,,71944968,54562141,73333701,78511075,10424,SRX21963295,SRS19039869,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.93133,,0.07401,,0.96181,,0.74558,,31,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28471,SRR26253204,SRX21963294,SRS19039868,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 1,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 21|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND1,Small RNA IFND1,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-1.deadaptor.fq.gz,fastq,289362334.0,11048590.0,IFN4 1.deadaptor.fq.gz,0:26.19,A:73933649;C:59386039;G:76847534;T:79184583;N:10529,26,,,,73933649,59386039,76847534,79184583,10529,SRX21963294,SRS19039868,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.91683,,0.07099,,0.96132,,0.64882,,25,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28472,SRR26253205,SRX21963293,SRS19039867,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 4,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 20|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA4,Small RNA IFNA4,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-4.deadaptor.fq.gz,fastq,270529395.0,11070360.0,IFN1 4.deadaptor.fq.gz,0:24.44,A:69759888;C:54924667;G:71358091;T:74470720;N:16029,24,,,,69759888,54924667,71358091,74470720,16029,SRX21963293,SRS19039867,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.88469,,0.06696,,0.96664,,0.74853,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28473,SRR26253206,SRX21963292,SRS19039866,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 3,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 19|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA3,Small RNA IFNA3,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-3.deadaptor.fq.gz,fastq,353291957.0,11740560.0,IFN1 3.deadaptor.fq.gz,0:30.09,A:89026549;C:76490337;G:94719420;T:93036955;N:18696,30,,,,89026549,76490337,94719420,93036955,18696,SRX21963292,SRS19039866,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.83151,,0.07199,,0.96471,,0.71641,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28474,SRR26253207,SRX21963291,SRS19039865,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 2,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 18|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA2,Small RNA IFNA2,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-2.deadaptor.fq.gz,fastq,257949577.0,11213774.0,IFN1 2.deadaptor.fq.gz,0:23.00,A:67371681;C:51128621;G:67605590;T:71826657;N:17028,23,,,,67371681,51128621,67605590,71826657,17028,SRX21963291,SRS19039865,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.91396,,0.06536,,0.97197,,0.76269,,23,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28475,SRR26253208,SRX21963290,SRS19039864,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN1 1,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 17|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFNA1,Small RNA IFNA1,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN1-1.deadaptor.fq.gz,fastq,329358383.0,11799176.0,IFN1 1.deadaptor.fq.gz,0:27.91,A:84093681;C:68961271;G:86502739;T:89779605;N:21087,27,,,,84093681,68961271,86502739,89779605,21087,SRX21963290,SRS19039864,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.92116,,0.07483,,0.96796,,0.75179,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28476,SRR26253209,SRX21963289,SRS19039863,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 4,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 16|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C4,Small RNA C4,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-4.deadaptor.fq.gz,fastq,251577736.0,10951659.0,Control 4.deadaptor.fq.gz,0:22.97,A:65382449;C:50041232;G:66038625;T:70106464;N:8966,22,,,,65382449,50041232,66038625,70106464,8966,SRX21963289,SRS19039863,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.89744,,0.06821,,0.96607,,0.63829,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28477,SRR26253210,SRX21963288,SRS19039862,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 3,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 15|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C3,Small RNA C3,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-3.deadaptor.fq.gz,fastq,252164979.0,11004167.0,Control 3.deadaptor.fq.gz,0:22.92,A:65850899;C:48466665;G:66708038;T:71130786;N:8591,22,,,,65850899,48466665,66708038,71130786,8591,SRX21963288,SRS19039862,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.91567,,0.06804,,0.96278,,0.75579,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28478,SRR26253211,SRX21963287,SRS19039861,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 4,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 24|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND4,Small RNA IFND4,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-4.deadaptor.fq.gz,fastq,291708053.0,11503883.0,IFN4 4.deadaptor.fq.gz,0:25.36,A:74079231;C:61368459;G:76898572;T:79351225;N:10566,25,,,,74079231,61368459,76898572,79351225,10566,SRX21963287,SRS19039861,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.88888,,0.0633,,0.97305,,0.74862,,23,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28479,SRR26253212,SRX21963286,SRS19039860,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA IFN4 3,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 23|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA IFND3,Small RNA IFND3,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,IFN4-3.deadaptor.fq.gz,fastq,349995495.0,11885662.0,IFN4 3.deadaptor.fq.gz,0:29.45,A:87443709;C:76373108;G:92741296;T:93425866;N:11516,29,,,,87443709,76373108,92741296,93425866,11516,SRX21963286,SRS19039860,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.92619,,0.06843,,0.9709,,0.74977,,73,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28480,SRR26253213,SRX21963285,SRS19039859,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 2,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 14|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C2,Small RNA C2,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-2.deadaptor.fq.gz,fastq,254163676.0,10744164.0,Control 2.deadaptor.fq.gz,0:23.66,A:66003417;C:49309846;G:67463940;T:71377644;N:8829,23,,,,66003417,49309846,67463940,71377644,8829,SRX21963285,SRS19039859,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.93068,,0.06626,,0.96441,,0.7492,,22,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28481,SRR26253214,SRX21963284,SRS19039858,SRP464138,PRJNA1022587,Danio rerio Raw sequence reads,PRJNA1022587,Whole Genome Sequencing,In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.,,,,,Small RNA Control 1,,strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 13|BioSampleModel:Model organism or animal,,,,,,,,,Small RNAseq of zebrafish,Small RNA C1,Small RNA C1,small RNA seq of zebrafish,,,miRNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP464138,,,Control-1.deadaptor.fq.gz,fastq,267090429.0,11027241.0,Control 1.deadaptor.fq.gz,0:24.22,A:70162511;C:50705437;G:69872659;T:76339682;N:10140,24,,,,70162511,50705437,69872659,76339682,10140,SRX21963284,SRS19039858,SRA1724093,Shanghai Ocean University|College of Fisheries and Life Science,Shanghai Ocean University,1,0.93267,,0.07189,,0.96735,,0.75447,,21,,B,,usable mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-10-02,Undetermined,Undetermined,Cell Line,Cell Line 28496,SRR26321412,SRX22029502,SRS19102283,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 1,R27,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R27,R27,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R27.fastq,fastq,23400.0,312.0,R27.fastq,0:75,A:7949;C:4612;G:4730;T:6100;N:9,75,,,,7949,4612,4730,6100,9,SRX22029502,SRS19102283,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89642,,0.06772,,0.99827,,0.75,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28497,SRR26321413,SRX22029501,SRS19102284,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 4,R22,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R22,R22,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R22.fastq,fastq,23400.0,312.0,R22.fastq,0:75,A:7470;C:4460;G:5063;T:6404;N:3,75,,,,7470,4460,5063,6404,3,SRX22029501,SRS19102284,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87073,,0.12167,,0.99801,,0.73157,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28498,SRR26321414,SRX22029500,SRS19102281,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,R21,R21,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R21,R21,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R21.fastq,fastq,23400.0,312.0,R21.fastq,0:75,A:7540;C:4349;G:4857;T:6646;N:8,75,,,,7540,4349,4857,6646,8,SRX22029500,SRS19102281,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.8839,,0.04494,,0.99768,,0.72769,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28499,SRR26321415,SRX22029499,SRS19102282,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 2,R18,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R18,R18,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R18.fastq,fastq,23400.0,312.0,R18.fastq,0:75,A:7380;C:4430;G:5069;T:6518;N:3,75,,,,7380,4430,5069,6518,3,SRX22029499,SRS19102282,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87259,,0.11196,,0.99784,,0.69791,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28500,SRR26321416,SRX22029498,SRS19102280,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 1,R17,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R17,R17,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R17.fastq,fastq,23400.0,312.0,R17.fastq,0:75,A:7322;C:4455;G:5111;T:6507;N:5,75,,,,7322,4455,5111,6507,5,SRX22029498,SRS19102280,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90439,,0.12749,,0.99813,,0.71052,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28501,SRR26321417,SRX22029497,SRS19102279,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 5,R1,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R1,R1,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R1.fastq,fastq,23400.0,312.0,R1.fastq,0:75,A:7934;C:4560;G:4922;T:5980;N:4,75,,,,7934,4560,4922,5980,4,SRX22029497,SRS19102279,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87045,,0.10526,,0.99805,,0.71978,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28502,SRR26321418,SRX22029496,SRS19102277,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 4,R64,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R64,R64,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R64.fastq,fastq,23400.0,312.0,R64.fastq,0:75,A:7844;C:4626;G:4804;T:6126;N:0,75,,,,7844,4626,4804,6126,0,SRX22029496,SRS19102277,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90119,,0.07509,,0.99839,,0.8,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28503,SRR26321419,SRX22029495,SRS19102278,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 3,R61,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R61,R61,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R61.fastq,fastq,23400.0,312.0,R61.fastq,0:75,A:7454;C:4556;G:4960;T:6425;N:5,75,,,,7454,4556,4960,6425,5,SRX22029495,SRS19102278,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89098,,0.06015,,0.99813,,0.77102,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28504,SRR26321420,SRX22029494,SRS19102276,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 4,30,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,30,30,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,30.fastq,fastq,23400.0,312.0,30.fastq,0:75,A:7732;C:4528;G:5150;T:5987;N:3,75,,,,7732,4528,5150,5987,3,SRX22029494,SRS19102276,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.88447,,0.13147,,0.99772,,0.71584,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28505,SRR26321421,SRX22029493,SRS19102275,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,R11,R11,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,R11,R11,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R11.fastq,fastq,23400.0,312.0,R11.fastq,0:75,A:7818;C:4507;G:5107;T:5956;N:12,75,,,,7818,4507,5107,5956,12,SRX22029493,SRS19102275,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89345,,0.11475,,0.99847,,0.82258,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28506,SRR26321422,SRX22029492,SRS19102274,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 2,31,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,31,31,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,31.fastq,fastq,23400.0,312.0,31.fastq,0:75,A:7470;C:4619;G:4802;T:6504;N:5,75,,,,7470,4619,4802,6504,5,SRX22029492,SRS19102274,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87699,,0.11111,,0.99829,,0.78918,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28507,SRR26321423,SRX22029491,SRS19102273,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 1,R9,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,R9,R9,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R9.fastq,fastq,23400.0,312.0,R9.fastq,0:75,A:8130;C:4537;G:4809;T:5917;N:7,75,,,,8130,4537,4809,5917,7,SRX22029491,SRS19102273,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.83588,,0.05725,,0.99801,,0.68586,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28508,SRR26321424,SRX22029490,SRS19102272,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 4,R33,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R33,R33,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R33.fastq,fastq,23400.0,312.0,R33.fastq,0:75,A:7745;C:4421;G:4867;T:6360;N:7,75,,,,7745,4421,4867,6360,7,SRX22029490,SRS19102272,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87259,,0.07335,,0.99805,,0.71428,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28509,SRR26321425,SRX22029489,SRS19102271,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 3,R31,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R31,R31,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R31.fastq,fastq,23400.0,312.0,R31.fastq,0:75,A:7441;C:4483;G:5163;T:6313;N:0,75,,,,7441,4483,5163,6313,0,SRX22029489,SRS19102271,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.9,,0.05925,,0.9977,,0.68325,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28510,SRR26321426,SRX22029488,SRS19102270,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 2,R29,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R29,R29,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R29.fastq,fastq,23400.0,312.0,R29.fastq,0:75,A:7379;C:4698;G:5166;T:6156;N:1,75,,,,7379,4698,5166,6156,1,SRX22029488,SRS19102270,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.91016,,0.05859,,0.99797,,0.74528,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28511,SRR26321427,SRX22029487,SRS19102269,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 2,R62,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R62,R62,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R62.fastq,fastq,23400.0,312.0,R62.fastq,0:75,A:7383;C:4566;G:4713;T:6728;N:10,75,,,,7383,4566,4713,6728,10,SRX22029487,SRS19102269,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.91571,,0.05363,,0.99835,,0.77674,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 28512,SRR26321428,SRX22029486,SRS19102268,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,Replicate 1 for SHAM,SHAM 1,R63,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia: Melbourne|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R63,R63,ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R63.fastq,fastq,23400.0,312.0,R63.fastq,0:75,A:7516;C:4606;G:4765;T:6508;N:5,75,,,,7516,4606,4765,6508,5,SRX22029486,SRS19102268,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90385,,0.0423,,0.99805,,0.72429,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System 33439,SRR30280831,SRX25741613,SRS22381131,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 10,BP10# DMSO 3,,strain:TU|isolate:90|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 10,BP10# DMSO 3,BP10# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-3.fastq.gz,fastq,92459659.0,929177.0,BP10# DMSO 3.fastq.gz,0:99.51,A:21511804;C:24897124;G:24440562;T:21610169;N:0,99,,,,21511804,24897124,24440562,21610169,0,SRX25741613,SRS22381131,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33440,SRR30280704,SRX25741612,SRS22381130,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 9,BP10# DMSO 2,,strain:TU|isolate:89|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 9,BP10# DMSO 2,BP10# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-2.fastq.gz,fastq,184067375.0,1813659.0,BP10# DMSO 2.fastq.gz,0:101.49,A:43014934;C:49110340;G:48560159;T:43381942;N:0,101,,,,43014934,49110340,48560159,43381942,0,SRX25741612,SRS22381130,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33441,SRR30280705,SRX25741611,SRS22381129,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 8,BP10# DMSO 1,,strain:TU|isolate:88|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 8,BP10# DMSO 1,BP10# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-1.fastq.gz,fastq,148237805.0,1464542.0,BP10# DMSO 1.fastq.gz,0:101.22,A:34729919;C:39397602;G:39251519;T:34858765;N:0,101,,,,34729919,39397602,39251519,34858765,0,SRX25741611,SRS22381129,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33442,SRR30280706,SRX25741610,SRS22381128,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 7,BP10# 7,,strain:TU|isolate:87|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 7,BP10# 7,BP10# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-7.fastq.gz,fastq,164490060.0,1636480.0,BP10# 7.fastq.gz,0:100.51,A:38838318;C:43438465;G:43456970;T:38756307;N:0,100,,,,38838318,43438465,43456970,38756307,0,SRX25741610,SRS22381128,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33443,SRR30280707,SRX25741609,SRS22381127,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 6,BP10# 6,,strain:TU|isolate:86|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 6,BP10# 6,BP10# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-6.fastq.gz,fastq,155194512.0,1505703.0,BP10# 6.fastq.gz,0:103.07,A:36677853;C:40887150;G:40906247;T:36723262;N:0,103,,,,36677853,40887150,40906247,36723262,0,SRX25741609,SRS22381127,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33444,SRR30280708,SRX25741608,SRS22381126,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 5,BP10# 5,,strain:TU|isolate:85|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 5,BP10# 5,BP10# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-5.fastq.gz,fastq,163104451.0,1593080.0,BP10# 5.fastq.gz,0:102.38,A:38629973;C:43080977;G:42996215;T:38397286;N:0,102,,,,38629973,43080977,42996215,38397286,0,SRX25741608,SRS22381126,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33445,SRR30280709,SRX25741607,SRS22381125,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 4,BP10# 4,,strain:TU|isolate:84|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 4,BP10# 4,BP10# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-4.fastq.gz,fastq,141101402.0,1409537.0,BP10# 4.fastq.gz,0:100.10,A:33334876;C:37175155;G:37298446;T:33292925;N:0,100,,,,33334876,37175155,37298446,33292925,0,SRX25741607,SRS22381125,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33446,SRR30280710,SRX25741606,SRS22381124,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 3,BP10# 3,,strain:TU|isolate:83|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 3,BP10# 3,BP10# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-3.fastq.gz,fastq,156294355.0,1507427.0,BP10# 3.fastq.gz,0:103.68,A:36910418;C:41342273;G:41169658;T:36872006;N:0,103,,,,36910418,41342273,41169658,36872006,0,SRX25741606,SRS22381124,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33447,SRR30280711,SRX25741605,SRS22381123,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 2,BP10# 2,,strain:TU|isolate:82|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 2,BP10# 2,BP10# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-2.fastq.gz,fastq,111628166.0,1080707.0,BP10# 2.fastq.gz,0:103.29,A:26410755;C:29627534;G:29253738;T:26336139;N:0,103,,,,26410755,29627534,29253738,26336139,0,SRX25741605,SRS22381123,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33448,SRR30280712,SRX25741604,SRS22381122,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 1,BP10# 1,,strain:TU|isolate:81|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 1,BP10# 1,BP10# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-1.fastq.gz,fastq,143973283.0,1411136.0,BP10# 1.fastq.gz,0:102.03,A:34301322;C:37717275;G:37805886;T:34148800;N:0,102,,,,34301322,37717275,37805886,34148800,0,SRX25741604,SRS22381122,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33449,SRR30280713,SRX25741603,SRS22381120,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 9,BP2# DMSO 2,,strain:TU|isolate:9|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 9,BP2# DMSO 2,BP2# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-2.fastq.gz,fastq,121679118.0,1146532.0,BP2# DMSO 2.fastq.gz,0:106.13,A:28957172;C:31903260;G:31955173;T:28863513;N:0,106,,,,28957172,31903260,31955173,28863513,0,SRX25741603,SRS22381120,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33450,SRR30280714,SRX25741602,SRS22381121,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 10,BP8# DMSO 3,,strain:TU|isolate:80|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 10,BP8# DMSO 3,BP8# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-3.fastq.gz,fastq,116509377.0,1201618.0,BP8# DMSO 3.fastq.gz,0:96.96,A:27076619;C:31149115;G:31146213;T:27137430;N:0,96,,,,27076619,31149115,31146213,27137430,0,SRX25741602,SRS22381121,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33451,SRR30280715,SRX25741601,SRS22381119,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 9,BP8# DMSO 2,,strain:TU|isolate:79|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 9,BP8# DMSO 2,BP8# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-2.fastq.gz,fastq,126980560.0,1245267.0,BP8# DMSO 2.fastq.gz,0:101.97,A:30148136;C:33803559;G:33492078;T:29536787;N:0,101,,,,30148136,33803559,33492078,29536787,0,SRX25741601,SRS22381119,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33452,SRR30280716,SRX25741600,SRS22381118,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 8,BP8# DMSO 1,,strain:TU|isolate:78|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 8,BP8# DMSO 1,BP8# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-1.fastq.gz,fastq,123397953.0,1167071.0,BP8# DMSO 1.fastq.gz,0:105.73,A:28979230;C:32683758;G:32531951;T:29203014;N:0,105,,,,28979230,32683758,32531951,29203014,0,SRX25741600,SRS22381118,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33453,SRR30280717,SRX25741599,SRS22381117,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 7,BP8# 7,,strain:TU|isolate:77|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 7,BP8# 7,BP8# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-7.fastq.gz,fastq,117872895.0,1119299.0,BP8# 7.fastq.gz,0:105.31,A:27851183;C:31344900;G:30718485;T:27958327;N:0,105,,,,27851183,31344900,30718485,27958327,0,SRX25741599,SRS22381117,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33454,SRR30280718,SRX25741598,SRS22381116,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 6,BP8# 6,,strain:TU|isolate:76|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 6,BP8# 6,BP8# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-6.fastq.gz,fastq,111957625.0,1071866.0,BP8# 6.fastq.gz,0:104.45,A:26648862;C:29449571;G:29516510;T:26342682;N:0,104,,,,26648862,29449571,29516510,26342682,0,SRX25741598,SRS22381116,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33455,SRR30280719,SRX25741597,SRS22381115,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 5,BP8# 5,,strain:TU|isolate:75|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 5,BP8# 5,BP8# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-5.fastq.gz,fastq,126372290.0,1210093.0,BP8# 5.fastq.gz,0:104.43,A:30062430;C:33314558;G:33069100;T:29926202;N:0,104,,,,30062430,33314558,33069100,29926202,0,SRX25741597,SRS22381115,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33456,SRR30280720,SRX25741596,SRS22381114,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 4,BP8# 4,,strain:TU|isolate:74|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 4,BP8# 4,BP8# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-4.fastq.gz,fastq,128721856.0,1239512.0,BP8# 4.fastq.gz,0:103.85,A:30267273;C:34185892;G:33688377;T:30580314;N:0,103,,,,30267273,34185892,33688377,30580314,0,SRX25741596,SRS22381114,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33457,SRR30280721,SRX25741595,SRS22381113,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 3,BP8# 3,,strain:TU|isolate:73|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 3,BP8# 3,BP8# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-3.fastq.gz,fastq,128200329.0,1234995.0,BP8# 3.fastq.gz,0:103.81,A:30417908;C:33785230;G:33670842;T:30326349;N:0,103,,,,30417908,33785230,33670842,30326349,0,SRX25741595,SRS22381113,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33458,SRR30280722,SRX25741594,SRS22381112,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 2,BP8# 2,,strain:TU|isolate:72|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 2,BP8# 2,BP8# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-2.fastq.gz,fastq,99353699.0,947145.0,BP8# 2.fastq.gz,0:104.90,A:23560131;C:26008128;G:26310676;T:23474764;N:0,104,,,,23560131,26008128,26310676,23474764,0,SRX25741594,SRS22381112,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33459,SRR30280723,SRX25741593,SRS22381111,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 1,BP8# 1,,strain:TU|isolate:71|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 1,BP8# 1,BP8# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-1.fastq.gz,fastq,101253709.0,974909.0,BP8# 1.fastq.gz,0:103.86,A:24014647;C:26648401;G:26749516;T:23841145;N:0,103,,,,24014647,26648401,26749516,23841145,0,SRX25741593,SRS22381111,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33460,SRR30280724,SRX25741592,SRS22381110,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 8,BP2# DMSO 1,,strain:TU|isolate:8|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 8,BP2# DMSO 1,BP2# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-1.fastq.gz,fastq,54970926.0,518074.0,BP2# DMSO 1.fastq.gz,0:106.11,A:13057581;C:14507897;G:14456016;T:12949432;N:0,106,,,,13057581,14507897,14456016,12949432,0,SRX25741592,SRS22381110,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33461,SRR30280725,SRX25741591,SRS22381109,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 10,BP7# DMSO 3,,strain:TU|isolate:70|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 10,BP7# DMSO 3,BP7# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-3.fastq.gz,fastq,123214657.0,1237962.0,BP7# DMSO 3.fastq.gz,0:99.53,A:28785213;C:32846077;G:32681550;T:28901817;N:0,99,,,,28785213,32846077,32681550,28901817,0,SRX25741591,SRS22381109,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33462,SRR30280726,SRX25741590,SRS22381108,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 9,BP7# DMSO 2,,strain:TU|isolate:69|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 9,BP7# DMSO 2,BP7# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-2.fastq.gz,fastq,41215713.0,423271.0,BP7# DMSO 2.fastq.gz,0:97.37,A:9589570;C:11133557;G:10895490;T:9597096;N:0,97,,,,9589570,11133557,10895490,9597096,0,SRX25741590,SRS22381108,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33463,SRR30280727,SRX25741589,SRS22381107,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 8,BP7# DMSO 1,,strain:TU|isolate:68|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 8,BP7# DMSO 1,BP7# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-1.fastq.gz,fastq,250009982.0,2396988.0,BP7# DMSO 1.fastq.gz,0:104.30,A:59211578;C:66112203;G:65641188;T:59045013;N:0,104,,,,59211578,66112203,65641188,59045013,0,SRX25741589,SRS22381107,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33464,SRR30280728,SRX25741588,SRS22381106,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 7,BP7# 7,,strain:TU|isolate:67|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 7,BP7# 7,BP7# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-7.fastq.gz,fastq,44725970.0,423428.0,BP7# 7.fastq.gz,0:105.63,A:10573402;C:11833576;G:11724776;T:10594216;N:0,105,,,,10573402,11833576,11724776,10594216,0,SRX25741588,SRS22381106,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33465,SRR30280729,SRX25741587,SRS22381105,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 6,BP7# 6,,strain:TU|isolate:66|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 6,BP7# 6,BP7# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-6.fastq.gz,fastq,145545693.0,1385533.0,BP7# 6.fastq.gz,0:105.05,A:34431733;C:38602041;G:38257359;T:34254560;N:0,105,,,,34431733,38602041,38257359,34254560,0,SRX25741587,SRS22381105,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33466,SRR30280730,SRX25741586,SRS22381104,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 5,BP7# 5,,strain:TU|isolate:65|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 5,BP7# 5,BP7# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-5.fastq.gz,fastq,178532872.0,1748047.0,BP7# 5.fastq.gz,0:102.13,A:42591575;C:46798657;G:46820438;T:42322202;N:0,102,,,,42591575,46798657,46820438,42322202,0,SRX25741586,SRS22381104,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33467,SRR30280731,SRX25741585,SRS22381103,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 4,BP7# 4,,strain:TU|isolate:64|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 4,BP7# 4,BP7# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-4.fastq.gz,fastq,59046400.0,556476.0,BP7# 4.fastq.gz,0:106.11,A:14036205;C:15600456;G:15470219;T:13939520;N:0,106,,,,14036205,15600456,15470219,13939520,0,SRX25741585,SRS22381103,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33468,SRR30280732,SRX25741584,SRS22381102,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 3,BP7# 3,,strain:TU|isolate:63|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 3,BP7# 3,BP7# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-3.fastq.gz,fastq,167725955.0,1635470.0,BP7# 3.fastq.gz,0:102.56,A:39786240;C:44180010;G:44154342;T:39605363;N:0,102,,,,39786240,44180010,44154342,39605363,0,SRX25741584,SRS22381102,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33469,SRR30280733,SRX25741583,SRS22381101,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 2,BP7# 2,,strain:TU|isolate:62|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 2,BP7# 2,BP7# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-2.fastq.gz,fastq,160305207.0,1553984.0,BP7# 2.fastq.gz,0:103.16,A:38057812;C:42240658;G:42101188;T:37905549;N:0,103,,,,38057812,42240658,42101188,37905549,0,SRX25741583,SRS22381101,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33470,SRR30280734,SRX25741582,SRS22381100,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 1,BP7# 1,,strain:TU|isolate:61|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 1,BP7# 1,BP7# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-1.fastq.gz,fastq,170723714.0,1640146.0,BP7# 1.fastq.gz,0:104.09,A:40492006;C:45082123;G:44790747;T:40358838;N:0,104,,,,40492006,45082123,44790747,40358838,0,SRX25741582,SRS22381100,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33471,SRR30280735,SRX25741581,SRS22381099,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 7,BP2# 7,,strain:TU|isolate:7|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 7,BP2# 7,BP2# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-7.fastq.gz,fastq,38882822.0,376278.0,BP2# 7.fastq.gz,0:103.34,A:9199994;C:10348494;G:10211553;T:9122781;N:0,103,,,,9199994,10348494,10211553,9122781,0,SRX25741581,SRS22381099,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33472,SRR30280736,SRX25741580,SRS22381098,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 10,BP6# DMSO 3,,strain:TU|isolate:60|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 10,BP6# DMSO 3,BP6# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-DMSO-3.fastq.gz,fastq,168637726.0,1697190.0,BP6# DMSO 3.fastq.gz,0:99.36,A:39372962;C:45045318;G:44821656;T:39397790;N:0,99,,,,39372962,45045318,44821656,39397790,0,SRX25741580,SRS22381098,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33473,SRR30280737,SRX25741579,SRS22381097,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 9,BP6# DMSO 2,,strain:TU|isolate:59|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 9,BP6# DMSO 2,BP6# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-DMSO-2.fastq.gz,fastq,84169374.0,885774.0,BP6# DMSO 2.fastq.gz,0:95.02,A:19595849;C:22311196;G:22786761;T:19475568;N:0,95,,,,19595849,22311196,22786761,19475568,0,SRX25741579,SRS22381097,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33474,SRR30280738,SRX25741578,SRS22381096,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 8,BP6# DMSO 1,,strain:TU|isolate:58|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 8,BP6# DMSO 1,BP6# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-DMSO-1.fastq.gz,fastq,62914420.0,598585.0,BP6# DMSO 1.fastq.gz,0:105.11,A:14828390;C:16725889;G:16466687;T:14893454;N:0,105,,,,14828390,16725889,16466687,14893454,0,SRX25741578,SRS22381096,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33475,SRR30280739,SRX25741577,SRS22381095,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 7,BP6# 7,,strain:TU|isolate:57|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 7,BP6# 7,BP6# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-7.fastq.gz,fastq,57364216.0,554366.0,BP6# 7.fastq.gz,0:103.48,A:13557873;C:15204286;G:15249012;T:13353045;N:0,103,,,,13557873,15204286,15249012,13353045,0,SRX25741577,SRS22381095,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33476,SRR30280740,SRX25741576,SRS22381094,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 6,BP6# 6,,strain:TU|isolate:56|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 6,BP6# 6,BP6# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-6.fastq.gz,fastq,71062843.0,690536.0,BP6# 6.fastq.gz,0:102.91,A:16797854;C:18816496;G:18773789;T:16674704;N:0,102,,,,16797854,18816496,18773789,16674704,0,SRX25741576,SRS22381094,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33477,SRR30280741,SRX25741575,SRS22381093,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 5,BP6# 5,,strain:TU|isolate:55|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 5,BP6# 5,BP6# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-5.fastq.gz,fastq,388324559.0,3662531.0,BP6# 5.fastq.gz,0:106.03,A:91880623;C:102595870;G:102276868;T:91571198;N:0,106,,,,91880623,102595870,102276868,91571198,0,SRX25741575,SRS22381093,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33478,SRR30280742,SRX25741574,SRS22381092,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 4,BP6# 4,,strain:TU|isolate:54|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 4,BP6# 4,BP6# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-4.fastq.gz,fastq,53969235.0,528607.0,BP6# 4.fastq.gz,0:102.10,A:12709612;C:14307567;G:14331038;T:12621018;N:0,102,,,,12709612,14307567,14331038,12621018,0,SRX25741574,SRS22381092,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33479,SRR30280743,SRX25741573,SRS22381091,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 3,BP6# 3,,strain:TU|isolate:53|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 3,BP6# 3,BP6# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-3.fastq.gz,fastq,459563075.0,4338540.0,BP6# 3.fastq.gz,0:105.93,A:109287374;C:121502158;G:121023009;T:107750534;N:0,105,,,,109287374,121502158,121023009,107750534,0,SRX25741573,SRS22381091,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33480,SRR30280744,SRX25741572,SRS22381090,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 2,BP6# 2,,strain:TU|isolate:52|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 2,BP6# 2,BP6# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-2.fastq.gz,fastq,71041410.0,672229.0,BP6# 2.fastq.gz,0:105.68,A:16754424;C:18821001;G:18671023;T:16794962;N:0,105,,,,16754424,18821001,18671023,16794962,0,SRX25741572,SRS22381090,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33481,SRR30280745,SRX25741571,SRS22381089,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPPH 1,BP6# 1,,strain:TU|isolate:51|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPPH 1,BP6# 1,BP6# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP6#-1.fastq.gz,fastq,80894902.0,777427.0,BP6# 1.fastq.gz,0:104.05,A:19045795;C:21492943;G:21345360;T:19010804;N:0,104,,,,19045795,21492943,21345360,19010804,0,SRX25741571,SRS22381089,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33482,SRR30280746,SRX25741570,SRS22381088,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 6,BP2# 6,,strain:TU|isolate:6|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 6,BP2# 6,BP2# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-6.fastq.gz,fastq,41107063.0,387968.0,BP2# 6.fastq.gz,0:105.95,A:9745763;C:10874420;G:10753007;T:9733873;N:0,105,,,,9745763,10874420,10753007,9733873,0,SRX25741570,SRS22381088,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33483,SRR30280747,SRX25741569,SRS22381087,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 10,BP5# DMSO 3,,strain:TU|isolate:50|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 10,BP5# DMSO 3,BP5# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-DMSO-3.fastq.gz,fastq,69830864.0,722424.0,BP5# DMSO 3.fastq.gz,0:96.66,A:16195315;C:18820158;G:18512005;T:16303386;N:0,96,,,,16195315,18820158,18512005,16303386,0,SRX25741569,SRS22381087,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33484,SRR30280748,SRX25741568,SRS22381086,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 9,BP5# DMSO 2,,strain:TU|isolate:49|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 9,BP5# DMSO 2,BP5# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-DMSO-2.fastq.gz,fastq,164930364.0,1712837.0,BP5# DMSO 2.fastq.gz,0:96.29,A:38256270;C:44329270;G:44181612;T:38163212;N:0,96,,,,38256270,44329270,44181612,38163212,0,SRX25741568,SRS22381086,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33485,SRR30280749,SRX25741567,SRS22381085,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 8,BP5# DMSO 1,,strain:TU|isolate:48|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 8,BP5# DMSO 1,BP5# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-DMSO-1.fastq.gz,fastq,181332852.0,1769396.0,BP5# DMSO 1.fastq.gz,0:102.48,A:43111149;C:47723124;G:47703716;T:42794863;N:0,102,,,,43111149,47723124,47703716,42794863,0,SRX25741567,SRS22381085,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33486,SRR30280750,SRX25741566,SRS22381084,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 7,BP5# 7,,strain:TU|isolate:47|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 7,BP5# 7,BP5# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-7.fastq.gz,fastq,156354483.0,1499782.0,BP5# 7.fastq.gz,0:104.25,A:37138190;C:41308272;G:40976578;T:36931443;N:0,104,,,,37138190,41308272,40976578,36931443,0,SRX25741566,SRS22381084,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33487,SRR30280751,SRX25741565,SRS22381083,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 6,BP5# 6,,strain:TU|isolate:46|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 6,BP5# 6,BP5# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-6.fastq.gz,fastq,173968738.0,1651137.0,BP5# 6.fastq.gz,0:105.36,A:41303240;C:45813867;G:45637169;T:41214462;N:0,105,,,,41303240,45813867,45637169,41214462,0,SRX25741565,SRS22381083,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33488,SRR30280752,SRX25741564,SRS22381082,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 5,BP5# 5,,strain:TU|isolate:45|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 5,BP5# 5,BP5# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-5.fastq.gz,fastq,159018875.0,1527111.0,BP5# 5.fastq.gz,0:104.13,A:37684248;C:41887152;G:41787315;T:37660160;N:0,104,,,,37684248,41887152,41787315,37660160,0,SRX25741564,SRS22381082,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33489,SRR30280753,SRX25741563,SRS22381081,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 4,BP5# 4,,strain:TU|isolate:44|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 4,BP5# 4,BP5# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-4.fastq.gz,fastq,172581316.0,1672193.0,BP5# 4.fastq.gz,0:103.21,A:40735879;C:45609457;G:45531283;T:40704697;N:0,103,,,,40735879,45609457,45531283,40704697,0,SRX25741563,SRS22381081,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33490,SRR30280754,SRX25741562,SRS22381080,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 3,BP5# 3,,strain:TU|isolate:43|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 3,BP5# 3,BP5# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-3.fastq.gz,fastq,194293989.0,1881466.0,BP5# 3.fastq.gz,0:103.27,A:45699763;C:51658251;G:51051270;T:45884705;N:0,103,,,,45699763,51658251,51051270,45884705,0,SRX25741562,SRS22381080,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33491,SRR30280755,SRX25741561,SRS22381079,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 2,BP5# 2,,strain:TU|isolate:42|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 2,BP5# 2,BP5# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-2.fastq.gz,fastq,169428376.0,1621727.0,BP5# 2.fastq.gz,0:104.47,A:40092975;C:44761119;G:44430155;T:40144127;N:0,104,,,,40092975,44761119,44430155,40144127,0,SRX25741561,SRS22381079,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33492,SRR30280756,SRX25741560,SRS22381078,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPM 1,BP5# 1,,strain:TU|isolate:41|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPM 1,BP5# 1,BP5# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP5#-1.fastq.gz,fastq,144606960.0,1448818.0,BP5# 1.fastq.gz,0:99.81,A:34224454;C:38193289;G:38174848;T:34014369;N:0,99,,,,34224454,38193289,38174848,34014369,0,SRX25741560,SRS22381078,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33493,SRR30280757,SRX25741559,SRS22381077,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 5,BP2# 5,,strain:TU|isolate:5|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 5,BP2# 5,BP2# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-5.fastq.gz,fastq,54004345.0,528826.0,BP2# 5.fastq.gz,0:102.12,A:12647240;C:14354167;G:14231898;T:12771040;N:0,102,,,,12647240,14354167,14231898,12771040,0,SRX25741559,SRS22381077,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33494,SRR30280758,SRX25741558,SRS22381076,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 10,BP4# DMSO 3,,strain:TU|isolate:40|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 10,BP4# DMSO 3,BP4# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-DMSO-3.fastq.gz,fastq,36465434.0,372286.0,BP4# DMSO 3.fastq.gz,0:97.95,A:8490297;C:9790740;G:9683118;T:8501279;N:0,97,,,,8490297,9790740,9683118,8501279,0,SRX25741558,SRS22381076,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33495,SRR30280759,SRX25741557,SRS22381075,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 9,BP4# DMSO 2,,strain:TU|isolate:39|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 9,BP4# DMSO 2,BP4# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-DMSO-2.fastq.gz,fastq,93830164.0,961498.0,BP4# DMSO 2.fastq.gz,0:97.59,A:21868926;C:25159102;G:25064131;T:21738005;N:0,97,,,,21868926,25159102,25064131,21738005,0,SRX25741557,SRS22381075,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33496,SRR30280760,SRX25741556,SRS22381074,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 8,BP4# DMSO 1,,strain:TU|isolate:38|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 8,BP4# DMSO 1,BP4# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-DMSO-1.fastq.gz,fastq,207441996.0,2016339.0,BP4# DMSO 1.fastq.gz,0:102.88,A:48915341;C:54837085;G:54776415;T:48913155;N:0,102,,,,48915341,54837085,54776415,48913155,0,SRX25741556,SRS22381074,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33497,SRR30280761,SRX25741555,SRS22381073,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 7,BP4# 7,,strain:TU|isolate:37|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 7,BP4# 7,BP4# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-7.fastq.gz,fastq,255678685.0,2484772.0,BP4# 7.fastq.gz,0:102.90,A:60397868;C:67633446;G:67278186;T:60369185;N:0,102,,,,60397868,67633446,67278186,60369185,0,SRX25741555,SRS22381073,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33498,SRR30280762,SRX25741554,SRS22381072,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 6,BP4# 6,,strain:TU|isolate:36|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 6,BP4# 6,BP4# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-6.fastq.gz,fastq,188125535.0,1822074.0,BP4# 6.fastq.gz,0:103.25,A:44693539;C:49396733;G:49369506;T:44665757;N:0,103,,,,44693539,49396733,49369506,44665757,0,SRX25741554,SRS22381072,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33499,SRR30280763,SRX25741553,SRS22381071,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 5,BP4# 5,,strain:TU|isolate:35|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 5,BP4# 5,BP4# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-5.fastq.gz,fastq,196156699.0,1945323.0,BP4# 5.fastq.gz,0:100.84,A:46353674;C:51900251;G:51633045;T:46269729;N:0,100,,,,46353674,51900251,51633045,46269729,0,SRX25741553,SRS22381071,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33500,SRR30280764,SRX25741552,SRS22381070,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 4,BP4# 4,,strain:TU|isolate:34|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 4,BP4# 4,BP4# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-4.fastq.gz,fastq,208993750.0,2025321.0,BP4# 4.fastq.gz,0:103.19,A:49362077;C:55404157;G:54798534;T:49428982;N:0,103,,,,49362077,55404157,54798534,49428982,0,SRX25741552,SRS22381070,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33501,SRR30280765,SRX25741551,SRS22381069,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 3,BP4# 3,,strain:TU|isolate:33|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 3,BP4# 3,BP4# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-3.fastq.gz,fastq,202784927.0,1991949.0,BP4# 3.fastq.gz,0:101.80,A:47939013;C:53597649;G:53349661;T:47898604;N:0,101,,,,47939013,53597649,53349661,47898604,0,SRX25741551,SRS22381069,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33502,SRR30280766,SRX25741550,SRS22381068,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 2,BP4# 2,,strain:TU|isolate:32|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 2,BP4# 2,BP4# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-2.fastq.gz,fastq,219988278.0,2234932.0,BP4# 2.fastq.gz,0:98.43,A:51797569;C:58514113;G:57965852;T:51710744;N:0,98,,,,51797569,58514113,57965852,51710744,0,SRX25741550,SRS22381068,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33503,SRR30280767,SRX25741549,SRS22381067,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPG 1,BP4# 1,,strain:TU|isolate:31|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPG 1,BP4# 1,BP4# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP4#-1.fastq.gz,fastq,189677795.0,1882057.0,BP4# 1.fastq.gz,0:100.78,A:44788971;C:50182800;G:49981443;T:44724581;N:0,100,,,,44788971,50182800,49981443,44724581,0,SRX25741549,SRS22381067,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33504,SRR30280768,SRX25741548,SRS22381066,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 4,BP2# 4,,strain:TU|isolate:4|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 4,BP2# 4,BP2# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-4.fastq.gz,fastq,53747760.0,507303.0,BP2# 4.fastq.gz,0:105.95,A:12684975;C:14194468;G:14128107;T:12740210;N:0,105,,,,12684975,14194468,14128107,12740210,0,SRX25741548,SRS22381066,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33505,SRR30280769,SRX25741547,SRS22381065,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 10,BP3# DMSO 3,,strain:TU|isolate:30|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 10,BP3# DMSO 3,BP3# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-DMSO-3.fastq.gz,fastq,116330587.0,1173601.0,BP3# DMSO 3.fastq.gz,0:99.12,A:27347180;C:30698198;G:31018076;T:27267133;N:0,99,,,,27347180,30698198,31018076,27267133,0,SRX25741547,SRS22381065,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33506,SRR30280770,SRX25741546,SRS22381064,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 9,BP3# DMSO 2,,strain:TU|isolate:29|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 9,BP3# DMSO 2,BP3# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-DMSO-2.fastq.gz,fastq,73519676.0,743634.0,BP3# DMSO 2.fastq.gz,0:98.87,A:17229747;C:19443112;G:19611469;T:17235348;N:0,98,,,,17229747,19443112,19611469,17235348,0,SRX25741546,SRS22381064,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33507,SRR30280771,SRX25741545,SRS22381063,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 8,BP3# DMSO 1,,strain:TU|isolate:28|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 8,BP3# DMSO 1,BP3# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-DMSO-1.fastq.gz,fastq,255347833.0,2401083.0,BP3# DMSO 1.fastq.gz,0:106.35,A:61082865;C:67174427;G:66429786;T:60660755;N:0,106,,,,61082865,67174427,66429786,60660755,0,SRX25741545,SRS22381063,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33508,SRR30280772,SRX25741544,SRS22381062,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 7,BP3# 7,,strain:TU|isolate:27|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 7,BP3# 7,BP3# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-7.fastq.gz,fastq,58605409.0,547138.0,BP3# 7.fastq.gz,0:107.11,A:13947433;C:15493000;G:15274166;T:13890810;N:0,107,,,,13947433,15493000,15274166,13890810,0,SRX25741544,SRS22381062,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures 33509,SRR30280773,SRX25741543,SRS22381061,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPF 6,BP3# 6,,strain:TU|isolate:26|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPF 6,BP3# 6,BP3# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP3#-6.fastq.gz,fastq,72949772.0,686281.0,BP3# 6.fastq.gz,0:106.30,A:17339914;C:19406958;G:19027530;T:17175370;N:0,106,,,,17339914,19406958,19027530,17175370,0,SRX25741543,SRS22381061,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures