rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
9918,ERR5059480,ERX4865549,ERS5523939,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,aAM 6h rep1,JD AD30 PRPN1970901,,ENA FIRST PUBLIC:2022 07 05T12:06:33Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:33Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 01 2021 19:50:56:183 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-AD30_PRPN197090.tar.gz,nanopore,3739882337.0,3148027.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 09 01 2021 19:50:56:183 1,0:1188.01,A:1054501690;C:834193435;G:847423060;T:1003764152;N:0,1188,,,,1054501690,834193435,847423060,1003764152,0,ERX4865549,ERS5523939,ERA3206712,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,B,,usable mapping rate,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9919,ERR5167510,ERX4972431,ERS5593364,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,cDNA WT 2hpf rep1,JD T20 PDPN191089,,ENA FIRST PUBLIC:2022 07 05T12:06:34Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:34Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 21 01 2021 22:16:50:154 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,ena RUN CENTER FOR GENOMIC REGULATION CRG 21 01 2021 22:16:50:154 1,,,,,,,,,,,,ERX4972431,,ERA3319053,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,,,,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Cleavage,Embryo,Undetermined,Embryo Imprecise
9920,ERR4330695,ERX4277529,ERS4811113,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,WT 2h rep1,WT 2h rep1,SAMEA7050483,CENTER FOR GENOMIC REGULATION (CRG),ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7050483|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD B2 PDBN005727|common name:zebrafish|sample name:JD B2 PDBN005727,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-B2_PDBN005727.tar.gz,fastq,,,ena RUN CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 1,,,,,,,,,,,,ERX4277529,,ERA2767154,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,,,,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9921,ERR4327134,ERX4273968,ERS4808634,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,WT 4h rep2,WT 4h rep2,SAMEA7048000,CENTER FOR GENOMIC REGULATION (CRG),ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7048000|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD AM39 PDBN042841|common name:zebrafish|sample name:JD AM39 PDBN042841,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-AM39_PDBN042841.tar.gz,nanopore,719646261.0,897768.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 1,0:801.59,A:210217908;C:152963718;G:157393834;T:199070801;N:0,801,,,,210217908,152963718,157393834,199070801,0,ERX4273968,ERS4808634,ERA2764800,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,T,,under 1.2% mapping rate,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9922,ERR4330696,ERX4277530,ERS4811114,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,WT 4h rep1,WT 4h rep1,JD C3 PDBN006177,,ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 2,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-C3_PDBN006177.tar.gz,nanopore,4240799932.0,4331689.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 2,0:979.02,A:1229803846;C:914476674;G:943703560;T:1152815852;N:0,979,,,,1229803846,914476674,943703560,1152815852,0,ERX4277530,ERS4811114,ERA2767154,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,B,,usable mapping rate,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9923,ERR4327135,ERX4273969,ERS4808635,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,WT 6h rep1,WT 6h rep1,JD AC29 PDBN024889,,ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 2,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-AC29_PDBN024889.tar.gz,nanopore,1900324756.0,2013035.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 2,0:944.01,A:549431032;C:411510218;G:422103800;T:517279706;N:0,944,,,,549431032,411510218,422103800,517279706,0,ERX4273969,ERS4808635,ERA2764800,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,T,,long read,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9924,ERR4326350,ERX4273208,ERS4808398,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,430 LNA 6h rep1,430 LNA 6h rep1,SAMEA7047764,CENTER FOR GENOMIC REGULATION (CRG),ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7047764|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD H8 PDBN059569|common name:zebrafish|sample name:JD H8 PDBN059569,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 10:25:22:388 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-H8_PDBN059569.tar.gz,nanopore,722817654.0,657296.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 10:25:22:388 1,0:1099.68,A:206996491;C:157022109;G:155085437;T:203713617;N:0,1099,,,,206996491,157022109,155085437,203713617,0,ERX4273208,ERS4808398,ERA2764399,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,T,,under 1.2% mapping rate,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9925,ERR4335436,ERX4282181,ERS4818366,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,WT 6h rep2,WT 6h rep2,JD W23 PRPN039928,,ENA FIRST PUBLIC:2022 07 05T12:06:24Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:24Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,,,,,PromethION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 13 07 2020 18:19:23:456 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,PromethION,,ERP122761,PromethION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-W23_PRPN039928.tar.gz,nanopore,1268761319.0,1385621.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 13 07 2020 18:19:23:457 1,0:915.66,A:366823862;C:275507684;G:284634548;T:341795225;N:0,915,,,,366823862,275507684,284634548,341795225,0,ERX4282181,ERS4818366,ERA2769006,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,T,,under 1.2% mapping rate,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
9926,ERR4321680,ERX4268538,ERS4808125,ERP122761,PRJEB39265,RNA dynamics during zebrafish development,ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183,Other,RNA dynamics during early zebrafish development,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,WT 0h rep1,WT 0h rep1,JD A1 GDDN003032,,ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,,,,,,,,,GridION sequencing,ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 06 07 2020 17:45:26:236 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,OXFORD_NANOPORE,GridION,,ERP122761,GridION sequencing,ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05,JD-A1_GDDN003032.tar.gz,nanopore,753417826.0,698774.0,ena RUN CENTER FOR GENOMIC REGULATION CRG 06 07 2020 17:45:26:236 1,0:1078.20,A:214525685;C:165042952;G:171160615;T:202688574;N:0,1078,,,,214525685,165042952,171160615,202688574,0,ERX4268538,ERS4808125,ERA2763718,CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive,CENTER FOR GENOMIC REGULATION (CRG),,,,,,,,,,,,T,,long read,ont,ont,unknown,poly_a,unknown,bulk,unknown,unknown,,Spain,2022-07-05,Undetermined,Undetermined,Undetermined,Undetermined
29719,SRR27485664,SRX23156885,SRS20107306,SRP482074,PRJNA1061456,tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development,PRJNA1061456,Other,,,,,,eggs R3,,strain:TLAB fish|isolate:NA|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin|cultivar:NA|ecotype:NA|dev stage:activated eggs|collection date:2022|geo loc name:Austria|sex:mixed|tissue:activated eggs|replicate:3|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of zebrafish: eggs  rep4,EV06009,EV06009,RNA was extracted with Trizol and processed with QuantSeq three prime mRNA Seq Library Prep Kit FWD for Illumina Lexogen. 500 ng total RNA per sample. Single indexed QuantSeq libraries were QC checked on a Bioanalyzer 2100 Agilent using a High Sensitivity DNA Kit for correct insert size and quantified using Qubit dsDNA HS Assay Invitrogen. Pooled libraries were sequenced on a NextSeq500 instrument Illumina in 1x75bp single end sequencing mode,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,NextSeq 500,,SRP482074,,,EV06009.R1.fastq.gz,fastq,809138488.0,10734286.0,EV06009.R1.fastq.gz,0:75.38,A:236901398;C:156814193;G:179647937;T:235732894;N:42066,75,,,,236901398,156814193,179647937,235732894,42066,SRX23156885,SRS20107306,SRA1783314,Medical University of Vienna|Cell and Developmental Biology,Medical University of Vienna,1,0.92159,,0.07516,,0.837,,0.7566,,69,,B,,usable mapping rate,illumina,nextseq,3prime,poly_a,lexogen,bulk,unknown,unknown,,Austria,2024-01-11,Undetermined,Embryo,Undetermined,Embryo Imprecise
29730,SRR27485675,SRX23156874,SRS20107295,SRP482074,PRJNA1061456,tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development,PRJNA1061456,Other,,,,,,eggs R2,,strain:TLAB fish|isolate:NA|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin|cultivar:NA|ecotype:NA|dev stage:activated eggs|collection date:2022|geo loc name:Austria|sex:mixed|tissue:activated eggs|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of zebrafish: eggs  rep4,EV06002,EV06002,RNA was extracted with Trizol and processed with QuantSeq three prime mRNA Seq Library Prep Kit FWD for Illumina Lexogen. 500 ng total RNA per sample. Single indexed QuantSeq libraries were QC checked on a Bioanalyzer 2100 Agilent using a High Sensitivity DNA Kit for correct insert size and quantified using Qubit dsDNA HS Assay Invitrogen. Pooled libraries were sequenced on a NextSeq500 instrument Illumina in 1x75bp single end sequencing mode,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,NextSeq 500,,SRP482074,,,EV06002.R1.fastq.gz,fastq,632849068.0,8404028.0,EV06002.R1.fastq.gz,0:75.30,A:194183801;C:123105421;G:139266843;T:176255048;N:37955,75,,,,194183801,123105421,139266843,176255048,37955,SRX23156874,SRS20107295,SRA1783314,Medical University of Vienna|Cell and Developmental Biology,Medical University of Vienna,1,0.88896,,0.09385,,0.81864,,0.73385,,75,,B,,usable mapping rate,illumina,nextseq,3prime,poly_a,lexogen,bulk,unknown,unknown,,Austria,2024-01-11,Undetermined,Embryo,Undetermined,Embryo Imprecise
29737,SRR27477297,SRX23148650,SRS20099368,SRP482074,PRJNA1061456,tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development,PRJNA1061456,Other,,,,,,eggs R4,,strain:TLAB fish|isolate:NA|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin|cultivar:NA|ecotype:NA|dev stage:activated eggs|collection date:2022|geo loc name:Austria|sex:mixed|tissue:activated eggs|replicate:4|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of zebrafish: eggs  rep4,EV09002,EV09002,RNA was extracted with Trizol and processed with QuantSeq three prime mRNA Seq Library Prep Kit FWD for Illumina Lexogen. 500 ng total RNA per sample. Single indexed QuantSeq libraries were QC checked on a Bioanalyzer 2100 Agilent using a High Sensitivity DNA Kit for correct insert size and quantified using Qubit dsDNA HS Assay Invitrogen. Pooled libraries were sequenced on a NextSeq500 instrument Illumina in 1x75bp single end sequencing mode,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,NextSeq 500,,SRP482074,,,EV09002.R1.fastq.gz,fastq,546999929.0,7270092.0,EV09002.R1.fastq.gz,0:75.24,A:165415993;C:110874896;G:124384517;T:146294099;N:30424,75,,,,165415993,110874896,124384517,146294099,30424,SRX23148650,SRS20099368,SRA1782413,Medical University of Vienna|Cell and Developmental Biology,Medical University of Vienna,1,0.9065,,0.11883,,0.82231,,0.74466,,75,,B,,usable mapping rate,illumina,nextseq,3prime,poly_a,lexogen,bulk,unknown,unknown,,Austria,2024-01-10,Undetermined,Embryo,Undetermined,Embryo Imprecise
60104,SRR12142045,SRX8663215,SRS6944340,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of lysate for FigS2,,zebrafish lysate biological replicate 4,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:lysate|fig:S2|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 4,Dre 4,cDNA was synthesized with the lysate. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g004_1.fastq.gz,fastq,509713380.0,9994380.0,DreSceMix g004 1.fastq.gz,0:51,A:251366594;C:61585710;G:62159129;T:134578953;N:22994,51,,,,251366594,61585710,62159129,134578953,22994,SRX8663215,SRS6944340,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.67392,,0.54102,,0.86476,,0.37091,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60105,SRR12141709,SRX8663075,SRS6944200,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of lysate for FigS2,,zebrafish lysate biological replicate 3,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:lysate|fig:S2|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 3,Dre 3,cDNA was synthesized with the lysate. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g003_1.fastq.gz,fastq,499717482.0,9798382.0,DreSceMix g003 1.fastq.gz,0:51,A:263221073;C:56114768;G:56547079;T:123812019;N:22543,51,,,,263221073,56114768,56547079,123812019,22543,SRX8663075,SRS6944200,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.63258,,0.48288,,0.86819,,0.35874,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60106,SRR12141808,SRX8662976,SRS6944101,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of purified RNA from lysate for Fig.S2,,zebrafish purifiedRNA biological replicate 6,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:purified from lysate|fig:S2|replicate:biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 12,Dre 12,cDNA was synthesized with the purified RNA. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g014_1.fastq.gz,fastq,421063599.0,8256149.0,DreSceMix g014 1.fastq.gz,0:51,A:207118237;C:53600213;G:54041718;T:106284709;N:18722,51,,,,207118237,53600213,54041718,106284709,18722,SRX8662976,SRS6944101,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.47999,,0.19308,,0.85977,,0.46733,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60107,SRR12141828,SRX8662956,SRS6944081,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of purified RNA from lysate for Fig.S2,,zebrafish purifiedRNA biological replicate 4,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:purified from lysate|fig:S2|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 10,Dre 10,cDNA was synthesized with the purified RNA. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g012_1.fastq.gz,fastq,626464773.0,12283623.0,DreSceMix g012 1.fastq.gz,0:51,A:263307070;C:96744908;G:98635228;T:167749896;N:27671,51,,,,263307070,96744908,98635228,167749896,27671,SRX8662956,SRS6944081,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.50608,,0.14369,,0.83422,,0.45691,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60108,SRR12141839,SRX8662945,SRS6944070,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of purified RNA from lysate for Fig.S2,,zebrafish purifiedRNA biological replicate 3,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:purified from lysate|fig:S2|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 9,Dre 9,cDNA was synthesized with the purified RNA. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g011_1.fastq.gz,fastq,436381296.0,8556496.0,DreSceMix g011 1.fastq.gz,0:51,A:205579619;C:58008903;G:59021026;T:113752218;N:19530,51,,,,205579619,58008903,59021026,113752218,19530,SRX8662945,SRS6944070,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.46615,,0.18281,,0.84778,,0.44592,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60109,SRR12141850,SRX8662934,SRS6944059,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of purified RNA from lysate for Fig.S2,,zebrafish purifiedRNA biological replicate 2,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:purified from lysate|fig:S2|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 8,Dre 8,cDNA was synthesized with the purified RNA. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g010_1.fastq.gz,fastq,870727437.0,17073087.0,DreSceMix g010 1.fastq.gz,0:51,A:343772776;C:142428987;G:145570260;T:238917135;N:38279,51,,,,343772776,142428987,145570260,238917135,38279,SRX8662934,SRS6944059,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.52883,,0.1235,,0.82256,,0.45498,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60110,SRR12141861,SRX8662923,SRS6944047,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of purified RNA from lysate for Fig.S2,,zebrafish purifiedRNA biological replicate 1,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:purified from lysate|fig:S2|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 7,Dre 7,cDNA was synthesized with the purified RNA. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g009_1.fastq.gz,fastq,1875928206.0,36782906.0,DreSceMix g009 1.fastq.gz,0:51,A:684015713;C:329272255;G:335557540;T:526999083;N:83615,51,,,,684015713,329272255,335557540,526999083,83615,SRX8662923,SRS6944047,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.58553,,0.11315,,0.8029,,0.4678,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60111,SRR12141872,SRX8662912,SRS6944037,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of lysate for FigS2,,zebrafish lysate biological replicate 6,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:lysate|fig:S2|replicate:biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 6,Dre 6,cDNA was synthesized with the lysate. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g006_1.fastq.gz,fastq,390346044.0,7653844.0,DreSceMix g006 1.fastq.gz,0:51,A:194005234;C:46666192;G:46964771;T:102692143;N:17704,51,,,,194005234,46666192,46964771,102692143,17704,SRX8662912,SRS6944037,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.69496,,0.57077,,0.86864,,0.35451,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60112,SRR12141959,SRX8662825,SRS6943950,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of lysate for FigS2,,zebrafish lysate biological replicate 5,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:lysate|fig:S2|replicate:biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 5,Dre 5,cDNA was synthesized with the lysate. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g005_1.fastq.gz,fastq,684050964.0,13412764.0,DreSceMix g005 1.fastq.gz,0:51,A:318875237;C:88359396;G:89394558;T:187391266;N:30507,51,,,,318875237,88359396,89394558,187391266,30507,SRX8662825,SRS6943950,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.61659,,0.4142,,0.8393,,0.42049,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60113,SRR12142001,SRX8662783,SRS6943908,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of purified RNA from lysate for Fig.S2,,zebrafish purifiedRNA biological replicate 5,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:purified from lysate|fig:S2|replicate:biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 11,Dre 11,cDNA was synthesized with the purified RNA. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g013_1.fastq.gz,fastq,998754318.0,19583418.0,DreSceMix g013 1.fastq.gz,0:51,A:402091762;C:156702863;G:160047354;T:279867921;N:44418,51,,,,402091762,156702863,160047354,279867921,44418,SRX8662783,SRS6943908,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.52766,,0.13651,,0.81237,,0.45557,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60114,SRR12142002,SRX8662782,SRS6943907,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of lysate for FigS2,,zebrafish lysate biological replicate 2,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:lysate|fig:S2|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 2,Dre 2,cDNA was synthesized with the lysate. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g002_1.fastq.gz,fastq,702610578.0,13776678.0,DreSceMix g002 1.fastq.gz,0:51,A:332485038;C:89482705;G:90437771;T:190173083;N:31981,51,,,,332485038,89482705,90437771,190173083,31981,SRX8662782,SRS6943907,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.63597,,0.45832,,0.85088,,0.40969,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
60115,SRR12142003,SRX8662781,SRS6943906,SRP269853,PRJNA643885,performance test of DeLTa Seq,PRJNA643885,Other,This data set were used for development and performance evaluation of Direct lysate targeted RNA Seq DeLTa Seq,,,RNA Seq of lysate for FigS2,,zebrafish lysate biological replicate 1,,strain:AB|age:2 days|sex:hermaphrodite|tissue:whole|sample type:lysate|fig:S2|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,DeLTa Seq,Dre 1,Dre 1,cDNA was synthesized with the lysate. Non targeted RNA Seq were conducted according to Lasy Seq ver. 1.1 protocol18 https://sites.google.com/view/lasy seq/.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP269853,,,DreSceMix_g001_1.fastq.gz,fastq,1273185777.0,24964427.0,DreSceMix g001 1.fastq.gz,0:51,A:541573299;C:186989405;G:191401487;T:353163815;N:57771,51,,,,541573299,186989405,191401487,353163815,57771,SRX8662781,SRS6943906,SRA1094353,Ryukoku university|Fauculity of Agriculture,Ryukoku university,1,0.62046,,0.30937,,0.8197,,0.44014,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2020-07-03,Hatching,Embryo,Undetermined,Embryo Imprecise
66964,SRR16965143,SRX13156592,SRS11088496,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,1mix,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:10 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :mixture group,mix 1,mix 1,96hpf zebrafish larvae mixture group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,,mix2_1_2.fq.gz,fastq,3313823250.0,22092155.0,mix2 1 2.fq.gz,0:0 1:150,A:895726357;C:763402657;G:745765587;T:908922686;N:5963,0,150,,,895726357,763402657,745765587,908922686,5963,SRX13156592,SRS11088496,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.93604,,0.10794,,0.65587,,0.47956,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-17,Larval,Larval,Undetermined,Undetermined
66965,SRR16965144,SRX13156591,SRS11088495,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,3enf,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:9 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :enrofloxacin group,enf 3,enf 3,96hpf zebrafish larvae enrofloxacin group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,,enf_3.fq.gz,fastq,3304972350.0,22033149.0,enf 3.fq.gz,0:150 1:0,A:899427202;C:745999066;G:759917309;T:899625137;N:3636,150,0,,,899427202,745999066,759917309,899625137,3636,SRX13156591,SRS11088495,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94353,,0.10795,,0.66212,,0.47773,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-17,Larval,Larval,Undetermined,Undetermined
66967,SRR16965146,SRX13156589,SRS11088492,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,3car,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :carbendazim group,car 3,car 3,96hpf zebrafish larvae carbendazim group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,,car_3_1.fq.gz,fastq,3335622150.0,22237481.0,car 3 1.fq.gz,0:150 1:0,A:853229671;C:807433601;G:820478265;T:854475092;N:5521,150,0,,,853229671,807433601,820478265,854475092,5521,SRX13156589,SRS11088492,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.96567,,0.03093,,0.70997,,0.47751,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-17,Larval,Larval,Undetermined,Undetermined
66968,SRR16965147,SRX13156588,SRS11088494,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,1car,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:4 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :carbendazim group,car 1,car 1,96hpf zebrafish larvae carbendazim group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,,car_1_1.fq.gz,fastq,3378056400.0,22520376.0,car 1 1.fq.gz,0:150 1:0,A:886009175;C:795203398;G:809447342;T:887390300;N:6185,150,0,,,886009175,795203398,809447342,887390300,6185,SRX13156588,SRS11088494,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.95701,,0.05956,,0.67836,,0.4884,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-17,Larval,Larval,Undetermined,Undetermined
66969,SRR16965148,SRX13156587,SRS11088491,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,3con,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:3 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :control group,con 3,con 3,96hpf zebrafish larvae control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,,con_3_2.fq.gz,fastq,3359054500.0,33590545.0,con 3 2.fq.gz,0:100 1:0,A:914533337;C:755914202;G:773676246;T:914930715;N:0,100,0,,,914533337,755914202,773676246,914930715,0,SRX13156587,SRS11088491,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.95076,,0.10478,,0.65646,,0.49594,,100,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-17,Larval,Larval,Undetermined,Undetermined
66970,SRR16965149,SRX13156586,SRS11088489,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,3mix,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:12 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :mixture group,mix 3,mix 3,96hpf zebrafish larvae mixture group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,,mix2_3_1.fq.gz,fastq,3362094000.0,33620940.0,mix2 3 1.fq.gz,0:100 1:0,A:916124379;C:755910593;G:768246534;T:921812494;N:0,100,0,,,916124379,755910593,768246534,921812494,0,SRX13156586,SRS11088489,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94894,,0.10416,,0.65342,,0.49475,,100,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-17,Larval,Larval,Undetermined,Undetermined
66972,SRR16965151,SRX13156584,SRS11088488,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,2con,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:2 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :control group,con 2,con 2,96hpf zebrafish larvae control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,loader:fastq load.py,con_2_2.fq,fastq,3324287550.0,22161917.0,con 2 2.fq.gz,0:150,A:848766265;C:812477645;G:798995610;T:864040426;N:7604,150,,,,848766265,812477645,798995610,864040426,7604,SRX13156584,SRS11088488,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.95546,,0.03524,,0.70027,,0.48649,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-22,Larval,Larval,Undetermined,Undetermined
66973,SRR16965152,SRX13156583,SRS11088487,SRP346547,PRJNA780808,transcriptomics of carbendazim and enrofloxacin on zebrafish embryos,PRJNA780808,Other,reveal a interaction between ENF and CAR on metabolic regulation during development,,,,,1con,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:1 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio :control group,con 1,con 1,96hpf zebrafish larvae control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346547,,loader:fastq load.py,con_1_1.fq,fastq,3330724500.0,22204830.0,con 1 1.fq.gz,0:150,A:896812508;C:762246067;G:774062043;T:897597946;N:5936,150,,,,896812508,762246067,774062043,897597946,5936,SRX13156583,SRS11088487,SRA1329868,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94926,,0.08711,,0.66789,,0.48628,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-22,Larval,Larval,Undetermined,Undetermined
66975,SRR16959539,SRX13151073,SRS11083379,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,2dim,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:8 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : dimethomorph group,dim 2,dim 2,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,dim_2_1.fq.gz,fastq,3344257500.0,22295050.0,dim 2 1.fq.gz,0:150 1:0,A:895700119;C:767415749;G:784994320;T:896143585;N:3727,150,0,,,895700119,767415749,784994320,896143585,3727,SRX13151073,SRS11083379,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.9497,,0.08418,,0.66352,,0.49341,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66976,SRR16959540,SRX13151072,SRS11083378,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,1dim,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:7 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : dimethomorph group,dim 1,dim 1,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,dim_1_1.fq.gz,fastq,3318812250.0,22125415.0,dim 1 1.fq.gz,0:150 1:0,A:908481293;C:742787936;G:755930542;T:911608821;N:3658,150,0,,,908481293,742787936,755930542,911608821,3658,SRX13151072,SRS11083378,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94211,,0.11824,,0.65344,,0.47716,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66977,SRR16959541,SRX13151071,SRS11083377,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,3dif,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : difenoconazole group,dif 3,dif 3,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,dif_3_1.fq.gz,fastq,3318453000.0,22123020.0,dif 3 1.fq.gz,0:150 1:0,A:893975607;C:758489621;G:772391705;T:893592335;N:3732,150,0,,,893975607,758489621,772391705,893592335,3732,SRX13151071,SRS11083377,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94838,,0.08393,,0.66543,,0.4818,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66978,SRR16959542,SRX13151070,SRS11083376,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,2dif,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:5 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : difenoconazole group,dif 2,dif 2,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,dif_2_2.fq.gz,fastq,3304972350.0,22033149.0,dif 2 2.fq.gz,0:0 1:150,A:890456734;C:764917766;G:744757536;T:904833787;N:6527,0,150,,,890456734,764917766,744757536,904833787,6527,SRX13151070,SRS11083376,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.93514,,0.107,,0.6633,,0.47599,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66979,SRR16959543,SRX13151069,SRS11083375,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,1dif,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:4 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : difenoconazole group,dif 1,dif 1,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,dif_1_1.fq.gz,fastq,3295443900.0,21969626.0,dif 1 1.fq.gz,0:150 1:0,A:887936493;C:751636494;G:765508757;T:890358629;N:3527,150,0,,,887936493,751636494,765508757,890358629,3527,SRX13151069,SRS11083375,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94623,,0.09138,,0.66478,,0.4828,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66980,SRR16959544,SRX13151068,SRS11083374,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,3+con,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:3 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : control group,con 3,con 3,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,con_3_1.fq.gz,fastq,3306406800.0,22042712.0,con 3 1.fq.gz,0:150 1:0,A:872740236;C:773482184;G:788334419;T:871846539;N:3422,150,0,,,872740236,773482184,788334419,871846539,3422,SRX13151068,SRS11083374,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.95458,,0.06103,,0.67409,,0.48439,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66982,SRR16959546,SRX13151066,SRS11083372,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,2+con,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:2 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : control group,con 2,con 2,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,con_2_2.fq.gz,fastq,3324287550.0,22161917.0,con 2 2.fq.gz,0:0 1:150,A:848766265;C:812477645;G:798995610;T:864040426;N:7604,0,150,,,848766265,812477645,798995610,864040426,7604,SRX13151066,SRS11083372,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.95548,,0.03524,,0.70021,,0.4867,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
66983,SRR16959547,SRX13151065,SRS11083371,SRP346418,PRJNA780940,transcriptomics of difenoconazole and dimethomorph on zebrafish embryos,PRJNA780940,Other,Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples  so the deleterious effects of combined exposure warrant detailed examination. In this study  the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate  deformity rate  lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development  and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L  respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes  cdk1  and cdc20  thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.,,,,,1+con,,strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:1 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : control group,con 1,con 1,The final library was amplified with phi29 to make DNA nanoballs DNB  with more than 300 copies of one molecular.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,BGISEQ,BGISEQ-500,,SRP346418,,,con_1_1.fq.gz,fastq,3330724500.0,22204830.0,con 1 1.fq.gz,0:150 1:0,A:896812508;C:762246067;G:774062043;T:897597946;N:5936,150,0,,,896812508,762246067,774062043,897597946,5936,SRX13151065,SRS11083371,SRA1330365,China Agricultural University|College of animal science and technology,China Agricultural University,1,0.94925,,0.08711,,0.66772,,0.48635,,150,,B,,usable mapping rate,bgi,bgi,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-11-16,Larval,Larval,Undetermined,Undetermined
69604,SRR18935955,SRX15013551,SRS12762156,SRP372447,PRJNA832566,zebrafish RBC sequencing,PRJNA832566,Other,profiling the distinct transcriptional identity of RBC from different RBC related mutants.,,,,,alad RBC,,strain:alad mutant|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of RBC,L81332,L81332,FACS sorted alad mutant RBCs,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP372447,,,Alad-2_L7_I332.R1.clean.fastq.gz,fastq,3448675800.0,22991172.0,Alad 2 L7 I332.R1.clean.fastq.gz,0:150 1:0,A:909204217;C:819708757;G:815883274;T:903292138;N:587414,150,0,,,909204217,819708757,815883274,903292138,587414,SRX15013551,SRS12762156,SRA1410774,Chinese Acamedy of Sciences|Institute of zoology,Chinese Acamedy of Sciences,1,0.93973,,0.13997,,0.7685,,0.51168,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-04-27,Pharyngula,Embryo,Undetermined,Embryo Imprecise
69605,SRR18935956,SRX15013550,SRS12762156,SRP372447,PRJNA832566,zebrafish RBC sequencing,PRJNA832566,Other,profiling the distinct transcriptional identity of RBC from different RBC related mutants.,,,,,alad RBC,,strain:alad mutant|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of RBC,L81331,L81331,FACS sorted alad mutant RBCs,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP372447,,,Alad-1_L8_I331.R1.clean.fastq.gz,fastq,3987610500.0,26584070.0,Alad 1 L8 I331.R1.clean.fastq.gz,0:150 1:0,A:1031398922;C:974521107;G:967367126;T:1013951504;N:371841,150,0,,,1031398922,974521107,967367126,1013951504,371841,SRX15013550,SRS12762156,SRA1410774,Chinese Acamedy of Sciences|Institute of zoology,Chinese Acamedy of Sciences,1,0.9447,,0.1019,,0.81286,,0.58316,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-04-27,Pharyngula,Embryo,Undetermined,Embryo Imprecise
69606,SRR18935957,SRX15013549,SRS12762155,SRP372447,PRJNA832566,zebrafish RBC sequencing,PRJNA832566,Other,profiling the distinct transcriptional identity of RBC from different RBC related mutants.,,,,,alas2 RBC,,strain:alas2 mutant|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of RBC,L81330,L81330,FACS sorted alas2 mutant RBCs,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP372447,,,Alas2-2_L8_I330.R1.clean.fastq.gz,fastq,4163915100.0,27759434.0,Alas2 2 L8 I330.R1.clean.fastq.gz,0:150 1:0,A:1119245849;C:968636914;G:967111308;T:1108544148;N:376881,150,0,,,1119245849,968636914,967111308,1108544148,376881,SRX15013549,SRS12762155,SRA1410774,Chinese Acamedy of Sciences|Institute of zoology,Chinese Acamedy of Sciences,1,0.92608,,0.1778,,0.75471,,0.55161,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-04-27,Pharyngula,Embryo,Undetermined,Embryo Imprecise
69607,SRR18935958,SRX15013548,SRS12762155,SRP372447,PRJNA832566,zebrafish RBC sequencing,PRJNA832566,Other,profiling the distinct transcriptional identity of RBC from different RBC related mutants.,,,,,alas2 RBC,,strain:alas2 mutant|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of RBC,L81329,L81329,FACS sorted alas2 mutant RBCs,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP372447,,,Alas2-1_L8_I329.R1.clean.fastq.gz,fastq,3953391150.0,26355941.0,Alas2 1 L8 I329.R1.clean.fastq.gz,0:150 1:0,A:1035309566;C:950958591;G:946245209;T:1020520823;N:356961,150,0,,,1035309566,950958591,946245209,1020520823,356961,SRX15013548,SRS12762155,SRA1410774,Chinese Acamedy of Sciences|Institute of zoology,Chinese Acamedy of Sciences,1,0.93024,,0.14212,,0.81213,,0.61442,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-04-27,Pharyngula,Embryo,Undetermined,Embryo Imprecise
69608,SRR18935959,SRX15013547,SRS12762154,SRP372447,PRJNA832566,zebrafish RBC sequencing,PRJNA832566,Other,profiling the distinct transcriptional identity of RBC from different RBC related mutants.,,,,,WT RBC,,strain:WT|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of RBC,L81328,L81328,FACS sorted WT RBCs,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP372447,,,WT-2_L8_I328.R1.clean.fastq.gz,fastq,3589015200.0,23926768.0,WT 2 L8 I328.R1.clean.fastq.gz,0:150 1:0,A:922300230;C:887849832;G:879590696;T:898942142;N:332300,150,0,,,922300230,887849832,879590696,898942142,332300,SRX15013547,SRS12762154,SRA1410774,Chinese Acamedy of Sciences|Institute of zoology,Chinese Acamedy of Sciences,1,0.94576,,0.09241,,0.83514,,0.68592,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-04-27,Pharyngula,Embryo,Undetermined,Embryo Imprecise
69609,SRR18935960,SRX15013546,SRS12762154,SRP372447,PRJNA832566,zebrafish RBC sequencing,PRJNA832566,Other,profiling the distinct transcriptional identity of RBC from different RBC related mutants.,,,,,WT RBC,,strain:WT|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of RBC,L81327,L81327,FACS sorted WT RBCs,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP372447,,,WT-1_L8_I327.R1.clean.fastq.gz,fastq,4062851700.0,27085678.0,WT 1 L8 I327.R1.clean.fastq.gz,0:150 1:0,A:1028410873;C:1020911876;G:1010215515;T:1002940085;N:373351,150,0,,,1028410873,1020911876,1010215515,1002940085,373351,SRX15013546,SRS12762154,SRA1410774,Chinese Acamedy of Sciences|Institute of zoology,Chinese Acamedy of Sciences,1,0.94919,,0.0692,,0.85567,,0.70156,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-04-27,Pharyngula,Embryo,Undetermined,Embryo Imprecise
71591,SRR21773952,SRX17768899,SRS15295762,SRP400510,PRJNA885753,Danio rerio Raw sequence reads,PRJNA885753,Whole Genome Sequencing,normal Transcriptome sequencing of zebrafish,,,,,ISL 3,,strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zrbrafish,ISL 3,ISL 3,NORMAL RNA SEQ OF zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP400510,,,L1EFH311741--MJ_3.R1.raw.fastq.gz,fastq,3636106123.0,24080173.0,L1EFH311741  MJ 3.R1.raw.fastq.gz,0:151 1:0,A:986029307;C:836470528;G:856224433;T:957306917;N:74938,151,0,,,986029307,836470528,856224433,957306917,74938,SRX17768899,SRS15295762,SRA1510923,Jiangxi Maternal and Child Health Hospital|Oncology Department,Jiangxi Maternal and Child Health Hospital,1,0.95201,,0.07421,,0.72995,,0.47689,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-10-01,Larval,Larval,Undetermined,Undetermined
71592,SRR21773953,SRX17768898,SRS15295761,SRP400510,PRJNA885753,Danio rerio Raw sequence reads,PRJNA885753,Whole Genome Sequencing,normal Transcriptome sequencing of zebrafish,,,,,ISL 2,,strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zrbrafish,ISL 2,ISL 2,NORMAL RNA SEQ OF zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP400510,,,L1EFH311740--MJ_2.R1.raw.fastq.gz,fastq,4009114024.0,26550424.0,L1EFH311740  MJ 2.R1.raw.fastq.gz,0:151 1:0,A:1082365671;C:927178308;G:942280451;T:1057206324;N:83270,151,0,,,1082365671,927178308,942280451,1057206324,83270,SRX17768898,SRS15295761,SRA1510923,Jiangxi Maternal and Child Health Hospital|Oncology Department,Jiangxi Maternal and Child Health Hospital,1,0.93235,,0.11003,,0.67403,,0.46386,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-10-01,Larval,Larval,Undetermined,Undetermined
71593,SRR21773954,SRX17768897,SRS15295760,SRP400510,PRJNA885753,Danio rerio Raw sequence reads,PRJNA885753,Whole Genome Sequencing,normal Transcriptome sequencing of zebrafish,,,,,ISL 1,,strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zrbrafish,ISL 1,ISL 1,NORMAL RNA SEQ OF zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP400510,,,L1EFH311739--MJ_1.R1.raw.fastq.gz,fastq,3727259840.0,24683840.0,L1EFH311739  MJ 1.R1.raw.fastq.gz,0:151 1:0,A:1010831433;C:857231895;G:874029152;T:985090673;N:76687,151,0,,,1010831433,857231895,874029152,985090673,76687,SRX17768897,SRS15295760,SRA1510923,Jiangxi Maternal and Child Health Hospital|Oncology Department,Jiangxi Maternal and Child Health Hospital,1,0.93354,,0.11328,,0.67142,,0.46153,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-10-01,Larval,Larval,Undetermined,Undetermined
71594,SRR21773955,SRX17768896,SRS15295759,SRP400510,PRJNA885753,Danio rerio Raw sequence reads,PRJNA885753,Whole Genome Sequencing,normal Transcriptome sequencing of zebrafish,,,,,DMSO 3,,strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zrbrafish,DMSO 3,DMSO 3,NORMAL RNA SEQ OF zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP400510,,,L1EFH311744--MJC_3.R1.raw.fastq.gz,fastq,3786330134.0,25075034.0,L1EFH311744  MJC 3.R1.raw.fastq.gz,0:151 1:0,A:1019293395;C:877604419;G:892262588;T:997091221;N:78511,151,0,,,1019293395,877604419,892262588,997091221,78511,SRX17768896,SRS15295759,SRA1510923,Jiangxi Maternal and Child Health Hospital|Oncology Department,Jiangxi Maternal and Child Health Hospital,1,0.9339,,0.10346,,0.67243,,0.46972,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-10-01,Larval,Larval,Undetermined,Undetermined
71595,SRR21773956,SRX17768895,SRS15295758,SRP400510,PRJNA885753,Danio rerio Raw sequence reads,PRJNA885753,Whole Genome Sequencing,normal Transcriptome sequencing of zebrafish,,,,,DMSO 2,,strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zrbrafish,DMSO 2,DMSO 2,NORMAL RNA SEQ OF zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP400510,,,L1EFH311743--MJC_2.R1.raw.fastq.gz,fastq,3687067868.0,24417668.0,L1EFH311743  MJC 2.R1.raw.fastq.gz,0:151 1:0,A:984951883;C:863074103;G:876086315;T:962879156;N:76411,151,0,,,984951883,863074103,876086315,962879156,76411,SRX17768895,SRS15295758,SRA1510923,Jiangxi Maternal and Child Health Hospital|Oncology Department,Jiangxi Maternal and Child Health Hospital,1,0.93417,,0.10418,,0.66949,,0.46674,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-10-01,Larval,Larval,Undetermined,Undetermined
71596,SRR21773957,SRX17768894,SRS15295757,SRP400510,PRJNA885753,Danio rerio Raw sequence reads,PRJNA885753,Whole Genome Sequencing,normal Transcriptome sequencing of zebrafish,,,,,DMSO 1,,strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zrbrafish,DMSO 1,DMSO 1,NORMAL RNA SEQ OF zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP400510,,,L1EFH311742--MJC_1.R1.raw.fastq.gz,fastq,3606182453.0,23882003.0,L1EFH311742  MJC 1.R1.raw.fastq.gz,0:151 1:0,A:958579858;C:844483137;G:861497670;T:941546853;N:74935,151,0,,,958579858,844483137,861497670,941546853,74935,SRX17768894,SRS15295757,SRA1510923,Jiangxi Maternal and Child Health Hospital|Oncology Department,Jiangxi Maternal and Child Health Hospital,1,0.94042,,0.08934,,0.68396,,0.47261,,151,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-10-01,Larval,Larval,Undetermined,Undetermined