rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
36409,SRR516560,SRX156356,SRS347213,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo prim20 stage,D. rerio prim20 embryo,D. rerio prim20 embryo,,,,,,,,,,,CAGE   D. rerio prim20 embryo,CAGE   D. rerio prim20 embryo run2,D. rerio prim20 embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_prim20_run1.fastq,fastq,76770666.0,2843358.0,CAGE   D. rerio prim20 embryo run1,0:27,A:19320047;C:17585086;G:22511175;T:17354358;N:0,27,,,,19320047,17585086,22511175,17354358,0,SRX156356,SRS347213,SRA055273,University of Bergen,ZEPROME consortium,1,0.56472,,0.10044,,0.77469,,0.74192,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
36410,SRR516561,SRX156356,SRS347213,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo prim20 stage,D. rerio prim20 embryo,D. rerio prim20 embryo,,,,,,,,,,,CAGE   D. rerio prim20 embryo,CAGE   D. rerio prim20 embryo run2,D. rerio prim20 embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_prim20_run2.fastq,fastq,163254906.0,6046478.0,CAGE   D. rerio prim20 embryo run2,0:27,A:40211042;C:36959797;G:46866669;T:39217398;N:0,27,,,,40211042,36959797,46866669,39217398,0,SRX156356,SRS347213,SRA055273,University of Bergen,ZEPROME consortium,1,0.47475,,0.06947,,0.78409,,0.78014,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2013-08-31,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
36411,SRR516559,SRX156355,SRS347212,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo prim6 stage,D. rerio prim6 embryo,D. rerio prim6 embryo,,,,,,,,,,,CAGE   D. rerio prim6 embryo,CAGE   D. rerio prim6 embryo,D. rerio prim6 embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_prim6.fastq,fastq,283414275.0,10496825.0,CAGE   D. rerio prim6 embryo,0:27,A:70974303;C:66202040;G:80064124;T:66173808;N:0,27,,,,70974303,66202040,80064124,66173808,0,SRX156355,SRS347212,SRA055273,University of Bergen,ZEPROME consortium,1,0.53395,,0.07806,,0.78255,,0.77575,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2013-08-31,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
36412,SRR516557,SRX156352,SRS347211,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo 14 somites stage,D. rerio 14 somites embryo,D. rerio 14 somites embryo,,,,,,,,,,,CAGE   D. rerio 14 somites embryo,CAGE   D. rerio 14 somites embryo run2,D. rerio 14 somites embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,,,73689048.0,2729224.0,CAGE   D. rerio 14 somites embryo run1,0:27,A:19506796;C:16238588;G:21636330;T:16307334;N:0,27,,,,19506796,16238588,21636330,16307334,0,SRX156352,SRS347211,SRA055273,University of Bergen,ZEPROME consortium,1,0.63348,,0.09461,,0.76199,,0.68697,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
36413,SRR516558,SRX156352,SRS347211,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo 14 somites stage,D. rerio 14 somites embryo,D. rerio 14 somites embryo,,,,,,,,,,,CAGE   D. rerio 14 somites embryo,CAGE   D. rerio 14 somites embryo run2,D. rerio 14 somites embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_14somites_run2.fastq,fastq,212381811.0,7865993.0,CAGE   D. rerio 14 somites embryo run2,0:27,A:53780820;C:47467464;G:59893810;T:51239717;N:0,27,,,,53780820,47467464,59893810,51239717,0,SRX156352,SRS347211,SRA055273,University of Bergen,ZEPROME consortium,1,0.5278,,0.0806,,0.77589,,0.72881,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
36414,SRR516555,SRX156350,SRS347210,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo shield stage,D. rerio shield embryo,D. rerio shield embryo,,,,,,,,,,,CAGE   D. rerio shield embryo,CAGE   D. rerio shield embryo run2,D. rerio shield embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,,,81086886.0,3003218.0,CAGE   D. rerio shield embryo run1,0:27,A:20800196;C:18582826;G:23491216;T:18212648;N:0,27,,,,20800196,18582826,23491216,18212648,0,SRX156350,SRS347210,SRA055273,University of Bergen,ZEPROME consortium,1,0.60434,,0.09948,,0.80432,,0.72631,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Gastrula,Embryo,Embryo Imprecise,All anatomical structures
36415,SRR516556,SRX156350,SRS347210,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo shield stage,D. rerio shield embryo,D. rerio shield embryo,,,,,,,,,,,CAGE   D. rerio shield embryo,CAGE   D. rerio shield embryo run2,D. rerio shield embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_shield_run2.fastq,fastq,81675891.0,3025033.0,CAGE   D. rerio shield embryo run2,0:27,A:21590166;C:17662459;G:22692127;T:19731139;N:0,27,,,,21590166,17662459,22692127,19731139,0,SRX156350,SRS347210,SRA055273,University of Bergen,ZEPROME consortium,1,0.52624,,0.08062,,0.81793,,0.76291,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Gastrula,Embryo,Embryo Imprecise,All anatomical structures
36416,SRR516554,SRX156349,SRS347209,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo dome/zfs:0000015 stage,D. rerio dome/zfs:0000015 embryo,D. rerio dome/zfs:0000015 embryo,,,,,,,,,,,CAGE   D. rerio dome/zfs:0000015 embryo,CAGE   D. rerio dome/zfs:0000015 embryo,D. rerio dome/zfs:0000015 embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_30p_dome.fastq,fastq,165690819.0,6136697.0,CAGE   D. rerio dome/zfs:0000015 embryo,0:27,A:42721293;C:36492232;G:46154926;T:40322368;N:0,27,,,,42721293,36492232,46154926,40322368,0,SRX156349,SRS347209,SRA055273,University of Bergen,ZEPROME consortium,1,0.50236,,0.0905,,0.81824,,0.8156,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Blastula,Embryo,Embryo Imprecise,All anatomical structures
36417,SRR516552,SRX156347,SRS347208,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo sphere/dome stage,D. rerio sphere/dome embryo,D. rerio sphere/dome embryo,,,,,,,,,,,CAGE   D. rerio sphere/dome embryo,CAGE   D. rerio sphere/dome embryo run2,D. rerio sphere/dome embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_sphere_dome_run1.fastq,fastq,78937740.0,2923620.0,CAGE   D. rerio sphere/dome embryo run1,0:27,A:20705496;C:17020957;G:22237043;T:18974244;N:0,27,,,,20705496,17020957,22237043,18974244,0,SRX156347,SRS347208,SRA055273,University of Bergen,ZEPROME consortium,1,0.50917,,0.09193,,0.81523,,0.8084,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Blastula,Embryo,Embryo Imprecise,All anatomical structures
36418,SRR516553,SRX156347,SRS347208,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo sphere/dome stage,D. rerio sphere/dome embryo,D. rerio sphere/dome embryo,,,,,,,,,,,CAGE   D. rerio sphere/dome embryo,CAGE   D. rerio sphere/dome embryo run2,D. rerio sphere/dome embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_sphere_dome_run2.fastq,fastq,82071009.0,3039667.0,CAGE   D. rerio sphere/dome embryo run2,0:27,A:20823133;C:17914934;G:22973465;T:20359477;N:0,27,,,,20823133,17914934,22973465,20359477,0,SRX156347,SRS347208,SRA055273,University of Bergen,ZEPROME consortium,1,0.47213,,0.07583,,0.82384,,0.8313,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Blastula,Embryo,Embryo Imprecise,All anatomical structures
36419,SRR516551,SRX156338,SRS347207,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo oblong stage,D. rerio oblong embryo,D. rerio oblong embryo,,,,,,,,,,,CAGE   D. rerio oblong embryo,CAGE   D. rerio oblong embryo,D. rerio oblong embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,,,135892080.0,5033040.0,CAGE   D. rerio oblong embryo,0:27,A:34565898;C:30442218;G:38967845;T:31916119;N:0,27,,,,34565898,30442218,38967845,31916119,0,SRX156338,SRS347207,SRA055273,University of Bergen,ZEPROME consortium,1,0.56265,,0.09335,,0.80068,,0.70759,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Blastula,Embryo,Embryo Imprecise,All anatomical structures
36420,SRR516550,SRX156337,SRS347206,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo high stage,D. rerio high embryo,D. rerio high embryo,,,,,,,,,,,CAGE   D. rerio high embryo,CAGE   D. rerio high embryo,D. rerio high embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_high.fastq,fastq,128592846.0,4762698.0,CAGE   D. rerio high embryo,0:27,A:33693838;C:27629256;G:36692263;T:30577489;N:0,27,,,,33693838,27629256,36692263,30577489,0,SRX156337,SRS347206,SRA055273,University of Bergen,ZEPROME consortium,1,0.53282,,0.08323,,0.80854,,0.77395,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2013-08-31,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
36421,SRR516549,SRX156336,SRS347204,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo 512 cells stage,D. rerio 512 cells embryo,D. rerio 512 cells embyo,,,,,,,,,,,CAGE   D. rerio 512 cells embryo,CAGE   D. rerio 512 cells embryo,D. rerio 512 cells embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_512cells.fastq,fastq,150228810.0,5564030.0,CAGE   D. rerio 512 cells embryo,0:27,A:37826960;C:33838922;G:43403014;T:35159914;N:0,27,,,,37826960,33838922,43403014,35159914,0,SRX156336,SRS347204,SRA055273,University of Bergen,ZEPROME consortium,1,0.57925,,0.08753,,0.79933,,0.72579,,27,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2012-06-28,Blastula,Embryo,Embryo Imprecise,All anatomical structures
36422,SRR516548,SRX156334,SRS347202,SRP013950,PRJNA169500,Danio rerio embryonic promoterome,PRJNA169500,Transcriptome Analysis,Goal of this study is to generate genome wide maps of transcription initiation throughout early embryonic development of zebrafish Danio rerio. Cap analysis of gene expression CAGE is used to detect transcription start sites at 1bp resolution. CAGE data is complemented by ChIPseq datasets for promoter associated histone modifications to study dynamic changes of promoter usage and chromatin configuration throughout early embryonic development.,,pubmed:24531765,Zebrafish wild type AB strain   embryo 64 cells stage,D. rerio 64 cells embryo,D. rerio 64 cells embryo,,,,,,,,,,,CAGE   D. rerio 64 cells embryo,CAGE   D. rerio 64 cells embryo,D. rerio 64 cells embryo,1,,,OTHER,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>27</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP013950,,,CAGE_64cells.fastq,fastq,162784188.0,6029044.0,CAGE   D. rerio 64 cells embryo,0:27,A:41192860;C:36547869;G:46848833;T:38194626;N:0,27,,,,41192860,36547869,46848833,38194626,0,SRX156334,SRS347202,SRA055273,University of Bergen,ZEPROME consortium,,,,,,,,,,,,B,,usable mapping rate,illumina,early_illumina,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2013-08-31,Cleavage,Embryo,Embryo Imprecise,All anatomical structures
69378,SRR18516702,SRX14647801,SRS12413210,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007475BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Whole cell CAGE,DCD003740SQ,DCD003740SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003740SQ.USERdanio-user.R1.fastq.gz,fastq,57981552.0,1207949.0,CAGE seq Mueller lab 0013AS.DCD003740SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:13228227;C:15492921;G:15505739;T:13750626;N:4039,48,0,,,13228227,15492921,15505739,13750626,4039,SRX14647801,SRS12413210,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.18388,,0.02619,,0.85811,,0.52264,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69379,SRR18516703,SRX14647800,SRS12413216,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007476BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Nuclear CAGE,DCD003719SQ,DCD003719SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003719SQ.USERdanio-user.R1.fastq.gz,fastq,585510192.0,12198129.0,CAGE seq Mueller lab 0014AS.DCD003719SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:129885703;C:153766182;G:160138903;T:141666883;N:52521,48,0,,,129885703,153766182,160138903,141666883,52521,SRX14647800,SRS12413216,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.20391,,0.04196,,0.83453,,0.4979,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69380,SRR18516704,SRX14647799,SRS12413216,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007476BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Nuclear CAGE,DCD003718SQ,DCD003718SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003718SQ.USERdanio-user.R1.fastq.gz,fastq,593136528.0,12357011.0,CAGE seq Mueller lab 0014AS.DCD003718SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:130366174;C:156810351;G:159219365;T:146691922;N:48716,48,0,,,130366174,156810351,159219365,146691922,48716,SRX14647799,SRS12413216,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.14873,,0.03239,,0.86557,,0.49634,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69381,SRR18516705,SRX14647798,SRS12413216,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007476BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Nuclear CAGE,DCD003723SQ,DCD003723SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003723SQ.USERdanio-user.R1.fastq.gz,fastq,422696256.0,8806172.0,CAGE seq Mueller lab 0014AS.DCD003723SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:92712632;C:111696999;G:115145846;T:103105611;N:35168,48,0,,,92712632,111696999,115145846,103105611,35168,SRX14647798,SRS12413216,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.1594,,0.02997,,0.85591,,0.48496,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69382,SRR18516706,SRX14647797,SRS12413215,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007477BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Nuclear CAGE,DCD003737SQ,DCD003737SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003737SQ.USERdanio-user.R1.fastq.gz,fastq,1041108672.0,21689764.0,CAGE seq Mueller lab 0014AS.DCD003737SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:233996885;C:276232291;G:275987771;T:254800016;N:91709,48,0,,,233996885,276232291,275987771,254800016,91709,SRX14647797,SRS12413215,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.19665,,0.0423,,0.84271,,0.49525,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69383,SRR18516707,SRX14647796,SRS12413215,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007477BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Nuclear CAGE,DCD003729SQ,DCD003729SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003729SQ.USERdanio-user.R1.fastq.gz,fastq,383268528.0,7984761.0,CAGE seq Mueller lab 0014AS.DCD003729SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:83789437;C:103371728;G:102876480;T:93198236;N:32647,48,0,,,83789437,103371728,102876480,93198236,32647,SRX14647796,SRS12413215,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.15605,,0.03059,,0.86951,,0.50369,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69384,SRR18516708,SRX14647795,SRS12413215,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007477BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Nuclear CAGE,DCD003734SQ,DCD003734SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003734SQ.USERdanio-user.R1.fastq.gz,fastq,560665392.0,11680529.0,CAGE seq Mueller lab 0014AS.DCD003734SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:123278501;C:149059346;G:152514412;T:135763704;N:49429,48,0,,,123278501,149059346,152514412,135763704,49429,SRX14647795,SRS12413215,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.16518,,0.02906,,0.85283,,0.47924,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69385,SRR18516709,SRX14647794,SRS12413214,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007471BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Whole cell CAGE,DCD003731SQ,DCD003731SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003731SQ.USERdanio-user.R1.fastq.gz,fastq,534745104.0,11140523.0,CAGE seq Mueller lab 0013AS.DCD003731SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:122900964;C:145291239;G:142314928;T:124199394;N:38579,48,0,,,122900964,145291239,142314928,124199394,38579,SRX14647794,SRS12413214,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.21193,,0.03662,,0.8576,,0.51061,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69386,SRR18516710,SRX14647793,SRS12413214,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007471BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Whole cell CAGE,DCD003733SQ,DCD003733SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003733SQ.USERdanio-user.R1.fastq.gz,fastq,1106623152.0,23054649.0,CAGE seq Mueller lab 0013AS.DCD003733SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:244437769;C:302018709;G:293780395;T:266329857;N:56422,48,0,,,244437769,302018709,293780395,266329857,56422,SRX14647793,SRS12413214,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.25973,,0.02959,,0.84778,,0.50948,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69387,SRR18516711,SRX14647792,SRS12413214,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007471BS,,strain:WT|age:42hpf|dev stage:High pec|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq High pec Whole cell CAGE,DCD003735SQ,DCD003735SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003735SQ.USERdanio-user.R1.fastq.gz,fastq,829987920.0,17291415.0,CAGE seq Mueller lab 0013AS.DCD003735SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:189638839;C:226118233;G:218991435;T:195178858;N:60555,48,0,,,189638839,226118233,218991435,195178858,60555,SRX14647792,SRS12413214,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.20953,,0.03562,,0.85285,,0.52927,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69388,SRR18516712,SRX14647791,SRS12413213,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007472BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Whole cell CAGE,DCD003730SQ,DCD003730SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003730SQ.USERdanio-user.R1.fastq.gz,fastq,358730736.0,7473557.0,CAGE seq Mueller lab 0013AS.DCD003730SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:82114871;C:96481695;G:97889447;T:82217691;N:27032,48,0,,,82114871,96481695,97889447,82217691,27032,SRX14647791,SRS12413213,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.22955,,0.03488,,0.84719,,0.51204,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69389,SRR18516713,SRX14647790,SRS12413209,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007478BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Nuclear CAGE,DCD003732SQ,DCD003732SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003732SQ.USERdanio-user.R1.fastq.gz,fastq,833831760.0,17371495.0,CAGE seq Mueller lab 0014AS.DCD003732SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:184529953;C:221676233;G:220734592;T:206820467;N:70515,48,0,,,184529953,221676233,220734592,206820467,70515,SRX14647790,SRS12413209,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.16336,,0.03655,,0.88633,,0.47894,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69390,SRR18516714,SRX14647789,SRS12413213,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007472BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Whole cell CAGE,DCD003738SQ,DCD003738SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003738SQ.USERdanio-user.R1.fastq.gz,fastq,1160622288.0,24179631.0,CAGE seq Mueller lab 0013AS.DCD003738SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:261568282;C:313737609;G:310169539;T:275088632;N:58226,48,0,,,261568282,313737609,310169539,275088632,58226,SRX14647789,SRS12413213,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.27025,,0.0344,,0.86505,,0.50961,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69391,SRR18516715,SRX14647788,SRS12413213,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007472BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Whole cell CAGE,DCD003722SQ,DCD003722SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003722SQ.USERdanio-user.R1.fastq.gz,fastq,666656256.0,13888672.0,CAGE seq Mueller lab 0013AS.DCD003722SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:149770159;C:178068662;G:177661463;T:161122864;N:33108,48,0,,,149770159,178068662,177661463,161122864,33108,SRX14647788,SRS12413213,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.25511,,0.02671,,0.86436,,0.50531,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69392,SRR18516716,SRX14647787,SRS12413212,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007473BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Whole cell CAGE,DCD003727SQ,DCD003727SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003727SQ.USERdanio-user.R1.fastq.gz,fastq,924879888.0,19268331.0,CAGE seq Mueller lab 0013AS.DCD003727SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:214005056;C:251321459;G:244648845;T:214835794;N:68734,48,0,,,214005056,251321459,244648845,214835794,68734,SRX14647787,SRS12413212,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.2165,,0.03701,,0.84768,,0.54102,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69393,SRR18516717,SRX14647786,SRS12413212,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007473BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Whole cell CAGE,DCD003717SQ,DCD003717SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003717SQ.USERdanio-user.R1.fastq.gz,fastq,1485845376.0,30955112.0,CAGE seq Mueller lab 0013AS.DCD003717SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:329122121;C:402514173;G:390388645;T:363745867;N:74570,48,0,,,329122121,402514173,390388645,363745867,74570,SRX14647786,SRS12413212,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.23893,,0.0248,,0.86125,,0.50849,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69394,SRR18516718,SRX14647785,SRS12413212,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007473BS,,strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq Prim Whole cell CAGE,DCD003739SQ,DCD003739SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003739SQ.USERdanio-user.R1.fastq.gz,fastq,1372622736.0,28596307.0,CAGE seq Mueller lab 0013AS.DCD003739SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:306709302;C:373224967;G:360990874;T:331626639;N:70954,48,0,,,306709302,373224967,360990874,331626639,70954,SRX14647785,SRS12413212,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.26574,,0.02914,,0.85113,,0.52147,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
69395,SRR18516719,SRX14647784,SRS12413211,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007474BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Nuclear CAGE,DCD003721SQ,DCD003721SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003721SQ.USERdanio-user.R1.fastq.gz,fastq,425483904.0,8864248.0,CAGE seq Mueller lab 0014AS.DCD003721SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:98642418;C:114264552;G:114112965;T:98433833;N:30136,48,0,,,98642418,114264552,114112965,98433833,30136,SRX14647784,SRS12413211,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.21658,,0.03797,,0.85226,,0.48604,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69396,SRR18516720,SRX14647783,SRS12413211,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007474BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Nuclear CAGE,DCD003736SQ,DCD003736SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003736SQ.USERdanio-user.R1.fastq.gz,fastq,533681088.0,11118356.0,CAGE seq Mueller lab 0014AS.DCD003736SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:115850766;C:142773032;G:143794343;T:131220159;N:42788,48,0,,,115850766,142773032,143794343,131220159,42788,SRX14647783,SRS12413211,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.15054,,0.0279,,0.87434,,0.4867,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69397,SRR18516721,SRX14647782,SRS12413211,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007474BS,,strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq 5 9 somites Nuclear CAGE,DCD003726SQ,DCD003726SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003726SQ.USERdanio-user.R1.fastq.gz,fastq,250307520.0,5214740.0,CAGE seq Mueller lab 0014AS.DCD003726SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:55705158;C:65429159;G:68119770;T:61031856;N:21577,48,0,,,55705158,65429159,68119770,61031856,21577,SRX14647782,SRS12413211,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.19864,,0.04157,,0.85279,,0.48786,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
69398,SRR18516722,SRX14647781,SRS12413210,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007475BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Whole cell CAGE,DCD003720SQ,DCD003720SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003720SQ.USERdanio-user.R1.fastq.gz,fastq,536292432.0,11172759.0,CAGE seq Mueller lab 0013AS.DCD003720SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:122756671;C:142850582;G:140364671;T:130293257;N:27251,48,0,,,122756671,142850582,140364671,130293257,27251,SRX14647781,SRS12413210,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.23072,,0.04674,,0.89572,,0.59187,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69399,SRR18516723,SRX14647780,SRS12413210,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007475BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Whole cell CAGE,DCD003725SQ,DCD003725SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0013AS.DCD003725SQ.USERdanio-user.R1.fastq.gz,fastq,1839979776.0,38332912.0,CAGE seq Mueller lab 0013AS.DCD003725SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:422772310;C:484519947;G:479159876;T:453437875;N:89768,48,0,,,422772310,484519947,479159876,453437875,89768,SRX14647780,SRS12413210,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.22646,,0.03978,,0.88574,,0.556,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69400,SRR18516724,SRX14647779,SRS12413209,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007478BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Nuclear CAGE,DCD003728SQ,DCD003728SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003728SQ.USERdanio-user.R1.fastq.gz,fastq,778510272.0,16218964.0,CAGE seq Mueller lab 0014AS.DCD003728SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:170505572;C:207531743;G:206655879;T:193751108;N:65970,48,0,,,170505572,207531743,206655879,193751108,65970,SRX14647779,SRS12413209,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.1419,,0.02783,,0.8954,,0.49693,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures
69401,SRR18516725,SRX14647778,SRS12413209,SRP366491,PRJNA821088,Enhancer calling in early stages,PRJNA821088,Other,CAGE seq for enhancer calling in early stages for the DANIO CODE project.,,,,,DCD007478BS,,strain:WT|age:4.7hpf|dev stage:zfs:0000015|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,CAGE seq zfs:0000015 Nuclear CAGE,DCD003724SQ,DCD003724SQ,max read length:50,,,RNA-Seq,TRANSCRIPTOMIC,CAGE,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP366491,,,CAGE-seq_Mueller_lab_0014AS.DCD003724SQ.USERdanio-user.R1.fastq.gz,fastq,641108496.0,13356427.0,CAGE seq Mueller lab 0014AS.DCD003724SQ.USERdanio user.R1.fastq.gz,0:48 1:0,A:143927298;C:167543966;G:171107575;T:158473503;N:56154,48,0,,,143927298,167543966,171107575,158473503,56154,SRX14647778,SRS12413209,SRA1393740,DANIO-CODE|Department for Biosciences and Nutrition,DANIO-CODE DANIO-CODE,1,0.20203,,0.0454,,0.87091,,0.51364,,48,,B,,usable mapping rate,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2022-03-29,Blastula,Embryo,Embryo Imprecise,All anatomical structures