rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
29215,SRR27489731,SRX23160978,SRS20111136,SRP483112,PRJNA1056276,five prime UTR MPRA during early zebrafish embryogenesis,PRJNA1056276,Other,The goal is to determine the contribution of zebrafish five prime UTR sequences to translation initiation. The five prime UTR MPRA reporter library was injected at the 1 cell stage and samples were collected during early stages of embryogenesis. Polysome profiling was performed to quantify ribosome occupancy of each five prime UTR reporter.,,,RNA product,control RNA library,RNA mMessage MPRA library,,strain:not applicable|age:not applicable|dev stage:not applicable|collection date:2022 05 16|geo loc name:Switzerland: Basel|sex:not applicable|tissue:not applicable|biomaterial provider:Schier lab|collected by:Madalena M. Reimao Pinto|genotype:not applicable|growth protocol:not applicable|sample type:IVT mRNA|sample number:50|replicate:unique sample|BioSampleModel:Model organism or animal,,,,,,,,,control RNA library,Library 50,Library 50,PCR product was amplified from DNA plasmid pool with reporter specific primer  UMI were introduced ath the five primeend and library was amplified to include adapters compatible with Illumina sequencing.,,,OTHER,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP483112,,,BSSE_QGF_206685_HGWLYDSX3_3_RNA_mMessage_MPRA_library_test_GGTTATAA_GATATCGA_S50_L003_R1_001_MM_1.fastq.gz BSSE_QGF_206685_HGWLYDSX3_3_RNA_mMessage_MPRA_library_test_GGTTATAA_GATATCGA_S50_L003_R2_001_MM_1.fastq.gz,fastq fastq,16695252486.0,55282293.0,BSSE QGF 206685 HGWLYDSX3 3 RNA mMessage MPRA library test GGTTATAA GATATCGA S50 L003 R1 001 MM 1.fastq.gz,0:151 1:151,A:4275447149;C:4413405571;G:3936523108;T:4069049357;N:827301,151,151,,,4275447149,4413405571,3936523108,4069049357,827301,SRX23160978,SRS20111136,SRA1775336,University of Basel|Biozentrum Basel,University of Basel,2,0.02176,0.00021,0.00058,2e-05,0.99056,0.99933,0.41475,0.48571,151,151,T,T,mates < 9% mapping rate,illumina,novaseq_era,5prime,other,unknown,bulk,unknown,unknown,,Switzerland,2024-01-11,Undetermined,Embryo,Undetermined,Embryo Imprecise
37185,SRR1010334,SRX363385,SRS490049,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL7F transgenic line,,strain:AB strain MUTL7F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL7F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,D. rerio MUTL7F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL7F_transgene_R1.fastq MUTL7F_transgene_R2.fastq,fastq fastq,30678849.0,444621.0,D. rerio MUTL7F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,0:34 1:35,A:5994534;C:7452275;G:9596502;T:7623459;N:12079,34,35,,,5994534,7452275,9596502,7623459,12079,SRX363385,SRS490049,SRA104816,University of Bergen,ZEPROME consortium,2,0.38487,0.37445,0.0013,9e-05,0.99841,0.99991,0.00309,0.00012,34,35,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37186,SRR1010333,SRX363384,SRS490049,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL7F transgenic line,,strain:AB strain MUTL7F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL7F transgenic line   single locus CAGE endogeneous sf3a2,D. rerio MUTL7F transgenic line   single locus CAGE endogeneous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL7F_endogenous_R2.fastq MUTL7F_endogenous_R1.fastq,fastq fastq,78367233.0,1135757.0,D. rerio MUTL7F transgenic line   single locus CAGE endogeneous sf3a2,0:34 1:35,A:21010895;C:20506800;G:21883789;T:14935556;N:30193,34,35,,,21010895,20506800,21883789,14935556,30193,SRX363384,SRS490049,SRA104816,University of Bergen,ZEPROME consortium,2,0.56643,0.02972,6e-05,0.00056,0.99965,0.99995,0.00017,0.05769,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37187,SRR1010332,SRX363383,SRS490048,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL6F transgenic line,,strain:AB strain MUTL6F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL6F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,D. rerio MUTL6F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL6F_transgene_R2.fastq MUTL6F_transgene_R1.fastq,fastq fastq,36838272.0,533888.0,D. rerio MUTL6F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,0:34 1:35,A:7267891;C:8939911;G:11513757;T:9101861;N:14852,34,35,,,7267891,8939911,11513757,9101861,14852,SRX363383,SRS490048,SRA104816,University of Bergen,ZEPROME consortium,2,0.35237,0.20738,0.00196,4e-05,0.9991,0.99987,0.00131,0.00022,34,35,B,B,mate2-mate1 similar by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37188,SRR1010331,SRX363382,SRS490048,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL6F transgenic line,,strain:AB strain MUTL6F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL6F transgenic line   single locus CAGE endogeneous sf3a2,D. rerio MUTL6F transgenic line   single locus CAGE endogeneous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL6F_endogenous_R1.fastq MUTL6F_endogenous_R2.fastq,fastq fastq,67887582.0,983878.0,D. rerio MUTL6F transgenic line   single locus CAGE endogeneous sf3a2,0:34 1:35,A:18224546;C:17687428;G:19119778;T:12829091;N:26739,34,35,,,18224546,17687428,19119778,12829091,26739,SRX363382,SRS490048,SRA104816,University of Bergen,ZEPROME consortium,2,0.57761,0.02201,0.0001,0.00048,0.99975,0.99991,0.00011,0.02247,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37189,SRR1010330,SRX363381,SRS490047,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL5F transgenic line,,strain:AB strain MUTL5F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL5F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,D. rerio MUTL5F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL5F_transgene_R1.fastq MUTL5F_transgene_R2.fastq,fastq fastq,48750708.0,706532.0,D. rerio MUTL5F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,0:34 1:35,A:9468865;C:11866504;G:15193605;T:12203213;N:18521,34,35,,,9468865,11866504,15193605,12203213,18521,SRX363381,SRS490047,SRA104816,University of Bergen,ZEPROME consortium,2,0.37677,0.39423,0.0018,0.00013,0.99801,0.99989,0.00295,0.00011,34,35,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37190,SRR1010329,SRX363380,SRS490047,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL5F transgenic line,,strain:AB strain MUTL5F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL5F transgenic line   single locus CAGE endogeneous sf3a2,D. rerio MUTL5F transgenic line   single locus CAGE endogeneous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL5F_endogenous_R1.fastq MUTL5F_endogenous_R2.fastq,fastq fastq,85325883.0,1236607.0,D. rerio MUTL5F transgenic line   single locus CAGE endogeneous sf3a2,0:34 1:35,A:22831000;C:22316529;G:23804395;T:16340044;N:33915,34,35,,,22831000,22316529,23804395,16340044,33915,SRX363380,SRS490047,SRA104816,University of Bergen,ZEPROME consortium,2,0.59785,0.01902,0.00632,0.00081,0.99941,0.99993,0.00056,0.11235,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37191,SRR1010328,SRX363379,SRS490046,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL2F transgenic line,,strain:AB strain MUTL2F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL2F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,D. rerio MUTL2F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL2F_transgene_R1.fastq MUTL2F_transgene_R2.fastq,fastq fastq,68247900.0,989100.0,D. rerio MUTL2F transgenic line   single locus CAGE mutated sf3a2:mCherry transgene,0:34 1:35,A:13037092;C:16853304;G:21557175;T:16772703;N:27626,34,35,,,13037092,16853304,21557175,16772703,27626,SRX363379,SRS490046,SRA104816,University of Bergen,ZEPROME consortium,2,0.37746,0.14836,0.00135,0.00215,0.99912,0.99995,0.00128,0.0,34,35,B,B,mate2-mate1 similar by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37192,SRR1010327,SRX363378,SRS490046,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio MUTL2F transgenic line,,strain:AB strain MUTL2F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio MUTL2F transgenic line   single locus CAGE endogeneous sf3a2,D. rerio MUTL2F transgenic line   single locus CAGE endogeneous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,MUTL2F_endogenous_R1.fastq MUTL2F_endogenous_R2.fastq,fastq fastq,85300215.0,1236235.0,D. rerio MUTL2F transgenic line   single locus CAGE endogeneous sf3a2,0:34 1:35,A:22860161;C:22364533;G:24027064;T:16015109;N:33348,34,35,,,22860161,22364533,24027064,16015109,33348,SRX363378,SRS490046,SRA104816,University of Bergen,ZEPROME consortium,2,0.57324,0.0117,0.01138,0.00049,0.99943,0.99993,0.00087,0.02941,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37193,SRR1010326,SRX363377,SRS490045,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio WTL3F transgenic line,,strain:AB strain WTL3F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio WTL3F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,D. rerio WTL3F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,WTL3F_transgene_R1.fastq WTL3F_transgene_R2.fastq,fastq fastq,36051879.0,522491.0,D. rerio WTL3F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,0:34 1:35,A:6990071;C:8680451;G:10883119;T:9484027;N:14211,34,35,,,6990071,8680451,10883119,9484027,14211,SRX363377,SRS490045,SRA104816,University of Bergen,ZEPROME consortium,2,0.43354,0.14606,0.00247,9e-05,0.99896,0.99991,0.00217,0.00032,34,35,B,B,mate2-mate1 similar by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37194,SRR1010325,SRX363376,SRS490045,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio WTL3F transgenic line,,strain:AB strain WTL3F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio WTL3F transgenic line   single locus CAGE endogenous sf3a2,D. rerio WTL3F transgenic line   single locus CAGE endogenous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,WTL3F_endogenous_R1.fastq WTL3F_endogenous_R2.fastq,fastq fastq,78469284.0,1137236.0,D. rerio WTL3F transgenic line   single locus CAGE endogenous sf3a2,0:34 1:35,A:21059562;C:20597989;G:21976657;T:14804744;N:30332,34,35,,,21059562,20597989,21976657,14804744,30332,SRX363376,SRS490045,SRA104816,University of Bergen,ZEPROME consortium,2,0.54772,0.02239,3e-05,0.0,0.99979,0.99993,0.00012,0.06756,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37195,SRR1010324,SRX363375,SRS490044,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio WTL2F transgenic line,,strain:AB strain WTL2F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio WTL2F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,D. rerio WTL2F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,WTL2F_transgene_R1.fastq WTL2F_transgene_R2.fastq,fastq fastq,67052544.0,971776.0,D. rerio WTL2F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,0:34 1:35,A:12413417;C:16491074;G:20506887;T:17614500;N:26666,34,35,,,12413417,16491074,20506887,17614500,26666,SRX363375,SRS490044,SRA104816,University of Bergen,ZEPROME consortium,2,0.47234,0.16966,0.00033,0.00039,0.99918,0.99993,0.00051,0.0,34,35,B,B,mate2-mate1 similar by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37196,SRR1010323,SRX363374,SRS490044,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio WTL2F transgenic line,,strain:AB strain WTL2F line|development stage:high 3.3 hpf,,,,,,,,,D. rerio WTL2F transgenic line   single locus CAGE endogenous sf3a2,D. rerio WTL2F transgenic line   single locus CAGE endogenous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,WTL2F_endogenous_R1.fastq WTL2F_endogenous_R2.fastq,fastq fastq,71493591.0,1036139.0,D. rerio WTL2F transgenic line   single locus CAGE endogenous sf3a2,0:34 1:35,A:19123161;C:18705556;G:20092193;T:13545180;N:27501,34,35,,,19123161,18705556,20092193,13545180,27501,SRX363374,SRS490044,SRA104816,University of Bergen,ZEPROME consortium,2,0.56581,0.02161,0.00279,0.00056,0.99949,0.99991,0.00025,0.09333,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37197,SRR1010322,SRX363361,SRS490033,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio WTL1F transgenic line,,strain:AB strain WTL1F line|dev stage:high 3.3 hpf,,,,,,,,,D. rerio WTL1F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,D. rerio WTL1F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,WTL1F_transgene_R1.fastq WTL1F_transgene_R2.fastq,fastq fastq,95222070.0,1380030.0,D. rerio WTL1F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene,0:34 1:35,A:17371572;C:23537350;G:29495884;T:24779827;N:37437,34,35,,,17371572,23537350,29495884,24779827,37437,SRX363361,SRS490033,SRA104816,University of Bergen,ZEPROME consortium,2,0.44573,0.30978,0.00036,0.00019,0.99943,0.99991,0.00023,0.00124,34,35,B,B,mate2-mate1 similar by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise
37198,SRR1010321,SRX363360,SRS490033,SRP030770,PRJNA222234,Danio rerio Targeted Locus Loci,PRJNA222234,Transcriptome Analysis,Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.,,pubmed:24531765,stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry,Generic sample from Danio rerio,D. rerio WTL1F transgenic line,,strain:AB strain WTL1F line|dev stage:high 3.3 hpf,,,,,,,,,D. rerio WTL1F transgenic line   single locus CAGE endogenous sf3a2,D. rerio WTL1F transgenic line   single locus CAGE endogeneous sf3a2,1,1,,,OTHER,TRANSCRIPTOMIC,CAGE,PAIRED,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP030770,,,WTL1F_endogenous_R1.fastq WTL1F_endogenous_R2.fastq,fastq fastq,64955082.0,941378.0,D. rerio WTL1F transgenic line   single locus CAGE endogeneous sf3a2,0:34 1:35,A:17404375;C:16997013;G:18318738;T:12210960;N:23996,34,35,,,17404375,16997013,18318738,12210960,23996,SRX363360,SRS490033,SRA104816,University of Bergen,ZEPROME consortium,2,0.55528,0.02138,9e-05,0.00135,0.99963,0.99991,9e-05,0.10169,34,35,B,T,mate2 technical by mapping diff,illumina,hiseq_era,unknown,cage,unknown,bulk,unknown,unknown,,Unknown,2014-02-10,Blastula,Embryo,Undetermined,Embryo Imprecise