rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
48627,SRR7280654,SRX4184228,SRS3395608,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,Pool of one hundred 2hpf embryos,2hpf embryos,Embr 2hpf,,strain:AB|dev stage:2hpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 2hpf embryos,Embr 2hpf,Embr 2hpf,RNA extracted from a pool of one hundred embryos,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Embr_2hpf_R2-125.fq.gz Embr_2hpf_R1-125.fq.gz,fastq fastq,17109578000.0,68438312.0,Embr 2hpf R1 125.fq.gz,0:125 1:125,A:4536550134;C:4009266695;G:4076560218;T:4484964079;N:2236874,125,125,,,4536550134,4009266695,4076560218,4484964079,2236874,SRX4184228,SRS3395608,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.96221,0.96458,0.02765,0.02716,0.77116,0.77325,0.48649,0.4853,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Cleavage,Embryo,Trunk,Surface Structure
48628,SRR7280655,SRX4184227,SRS3395607,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,Pool of one hundred 8hpf embryos,8hpf embryos,Embr 8hpf,,strain:AB|dev stage:8hpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 8hpf embryos,Embr 8hpf,Embr 8hpf,RNA extracted from a pool of one hundred embryos,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Embr_8hpf_R1-125.fq.gz Embr_8hpf_R2-125.fq.gz,fastq fastq,20486524750.0,81946099.0,Embr 8hpf R2 125.fq.gz,0:125 1:125,A:5437735333;C:4808439456;G:4859422420;T:5377132981;N:3794560,125,125,,,5437735333,4808439456,4859422420,5377132981,3794560,SRX4184227,SRS3395607,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.96373,0.95763,0.07096,0.0702,0.75937,0.75866,0.48455,0.484,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Gastrula,Embryo,Trunk,Surface Structure
48629,SRR7280656,SRX4184226,SRS3395606,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,Pool of one hundred 12hpf embryos,12hpf embryos,Embr 12hpf,,strain:AB|dev stage:12hpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 12hpf embryos,Embr 12hpf,Embr 12hpf,RNA extracted from a pool of one hundred embryos,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Embr_12hpf_R2-125.fq.gz Embr_12hpf_R1-125.fq.gz,fastq fastq,22366284500.0,89465138.0,Embr 12hpf R1 125.fq.gz,0:125 1:125,A:5886492098;C:5284016845;G:5382041408;T:5809628253;N:4105896,125,125,,,5886492098,5284016845,5382041408,5809628253,4105896,SRX4184226,SRS3395606,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.96226,0.96763,0.06393,0.06451,0.74355,0.74472,0.48233,0.48387,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Segmentation,Embryo,Trunk,Surface Structure