rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
32925,SRR29498569,SRX25008883,SRS21709102,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M2l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:liver|identifier:M2l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,08,08,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M2l_R1.fq.gz M2l_R2.fq.gz,fastq fastq,7733826600.0,25779422.0,M2l R1.fq.gz,0:150 1:150,A:1754773283;C:2022716836;G:2330439864;T:1625790112;N:106505,150,150,,,1754773283,2022716836,2330439864,1625790112,106505,SRX25008883,SRS21709102,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.60941,0.31539,0.0377,0.09053,0.995,0.99478,0.50937,0.57123,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32927,SRR29498571,SRX25008881,SRS21709100,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M1l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:liver|identifier:M1l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,06,06,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M1l_R2.fq.gz M1l_R1.fq.gz,fastq fastq,8301268800.0,27670896.0,M1l R1.fq.gz,0:150 1:150,A:1856070257;C:2266693166;G:2413641098;T:1764769457;N:94822,150,150,,,1856070257,2266693166,2413641098,1764769457,94822,SRX25008881,SRS21709100,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.8289,0.73852,0.21964,0.50932,0.99648,0.99701,0.57332,0.51129,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32929,SRR29498573,SRX25008879,SRS21709098,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F2l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:liver|identifier:F2l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,04,04,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F2l_R1.fq.gz F2l_R2.fq.gz,fastq fastq,8701893900.0,29006313.0,F2l R1.fq.gz,0:150 1:150,A:1977580339;C:2299061131;G:2585058451;T:1840095650;N:98329,150,150,,,1977580339,2299061131,2585058451,1840095650,98329,SRX25008879,SRS21709098,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.72425,0.57704,0.15111,0.37121,0.99744,0.99762,0.61161,0.55762,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32933,SRR29498577,SRX25008875,SRS21709094,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F1l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:liver|identifier:F1l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,02,02,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F1l_R2.fq.gz F1l_R1.fq.gz,fastq fastq,4647564000.0,15491880.0,F1l R1.fq.gz,0:150 1:150,A:993332389;C:862184908;G:1814249126;T:977710185;N:87392,150,150,,,993332389,862184908,1814249126,977710185,87392,SRX25008875,SRS21709094,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.88683,0.14922,0.24654,0.08178,0.9583,0.99819,0.70978,0.20254,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System