rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
10403,ERR8527374,ERX8137561,ERS10539829,ERP135430,PRJEB50826,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E-MTAB-11079_2,Transcriptome Analysis,Libraries were made to compare the transcriptome of renin lineage cells RLCs from wild type versus ren knockout zebrafish kidneys. RLCs were FAC sorted  from pooled kidneys of ren+/+ or ren /  zebrafish  which carried ren:RFP and acta2:EGFP reporter genes  allowing the isolation of renin expressing cells and smooth muscle cells.,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,,Protocols: Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively. Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA  specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,ZF2,SAMEA12941033,University Of Edinburgh,ENA first public:2022 06 10|ENA last update:2022 06 10|External Id:SAMEA12941033|INSDC center alias:UOE|INSDC center name:University Of Edinburgh|INSDC first public:2022 06 10T00:18:52Z|INSDC last update:2022 06 10T00:18:52Z|INSDC status:public|Submitter Id:E MTAB 11079 2:ZF2|age:6|broker name:ArrayExpress|cell type:renin lineage cell|common name:zebrafish|developmental stage:adult|genotype:ren:RFP; acta2:EGFP; ren / |individual:9 12 kidneys pooled|inferred cell type:recruited RLC|organism part:kidney|phenotype:ren knockout|sample name:E MTAB 11079 2:ZF2|sex:mixed|strain:WIK,,,,,,,,,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E MTAB 11079 2:ZF2 p,ZF2 p,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively.  Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA   specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,Experimental Factor: phenotype:ren knockout,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,size fractionation,PAIRED,ILLUMINA,NextSeq 500,,ERP135430,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,ZF2_S2_L002_I1_001.fastq.gz ZF2_S2_L002_R1_001.fastq.gz ZF2_S2_L002_R2_001.fastq.gz,fastq fastq fastq,38557081640.0,125185330.0,E MTAB 11079 2:ZF2 S2 L002,0:8 1:150 2:150,A:13781315856;C:6436030786;G:6578059630;T:10759631611;N:561117,8,150,150,,13781315856,6436030786,6578059630,10759631611,561117,ERX8137561,ERS10539829,ERA9016154,University Of Edinburgh|European Nucleotide Archive,University Of Edinburgh|European Nucleotide Archive,2,0.0,0.84449,0.0,0.09657,1.0,0.8242,,0.52635,150,150,T,B,mate1 technical by mapping diff,illumina,nextseq,unknown,size_fractionation,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-06-10,Adult,Adult,Multi-tissue,Multi-system
10404,ERR8527377,ERX8137561,ERS10539829,ERP135430,PRJEB50826,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E-MTAB-11079_2,Transcriptome Analysis,Libraries were made to compare the transcriptome of renin lineage cells RLCs from wild type versus ren knockout zebrafish kidneys. RLCs were FAC sorted  from pooled kidneys of ren+/+ or ren /  zebrafish  which carried ren:RFP and acta2:EGFP reporter genes  allowing the isolation of renin expressing cells and smooth muscle cells.,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,,Protocols: Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively. Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA  specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,ZF2,SAMEA12941033,University Of Edinburgh,ENA first public:2022 06 10|ENA last update:2022 06 10|External Id:SAMEA12941033|INSDC center alias:UOE|INSDC center name:University Of Edinburgh|INSDC first public:2022 06 10T00:18:52Z|INSDC last update:2022 06 10T00:18:52Z|INSDC status:public|Submitter Id:E MTAB 11079 2:ZF2|age:6|broker name:ArrayExpress|cell type:renin lineage cell|common name:zebrafish|developmental stage:adult|genotype:ren:RFP; acta2:EGFP; ren / |individual:9 12 kidneys pooled|inferred cell type:recruited RLC|organism part:kidney|phenotype:ren knockout|sample name:E MTAB 11079 2:ZF2|sex:mixed|strain:WIK,,,,,,,,,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E MTAB 11079 2:ZF2 p,ZF2 p,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively.  Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA   specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,Experimental Factor: phenotype:ren knockout,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,size fractionation,PAIRED,ILLUMINA,NextSeq 500,,ERP135430,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,ZF2_S2_L001_I1_001.fastq.gz ZF2_S2_L001_R1_001.fastq.gz ZF2_S2_L001_R2_001.fastq.gz,fastq fastq fastq,38872269128.0,126208666.0,E MTAB 11079 2:ZF2 S2 L001,0:8 1:150 2:150,A:15151865400;C:6355030057;G:6591732598;T:9763441371;N:530374,8,150,150,,15151865400,6355030057,6591732598,9763441371,530374,ERX8137561,ERS10539829,ERA9016154,University Of Edinburgh|European Nucleotide Archive,University Of Edinburgh|European Nucleotide Archive,2,0.0,0.84526,0.0,0.09779,1.0,0.82609,,0.54388,150,150,T,B,mate1 technical by mapping diff,illumina,nextseq,unknown,size_fractionation,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-06-10,Adult,Adult,Multi-tissue,Multi-system
10405,ERR8527376,ERX8137560,ERS10539828,ERP135430,PRJEB50826,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E-MTAB-11079_2,Transcriptome Analysis,Libraries were made to compare the transcriptome of renin lineage cells RLCs from wild type versus ren knockout zebrafish kidneys. RLCs were FAC sorted  from pooled kidneys of ren+/+ or ren /  zebrafish  which carried ren:RFP and acta2:EGFP reporter genes  allowing the isolation of renin expressing cells and smooth muscle cells.,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,,Protocols: Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively. Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA  specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,ZF1,SAMEA12941032,University Of Edinburgh,ENA first public:2022 06 10|ENA last update:2022 06 10|External Id:SAMEA12941032|INSDC center alias:UOE|INSDC center name:University Of Edinburgh|INSDC first public:2022 06 10T00:18:52Z|INSDC last update:2022 06 10T00:18:52Z|INSDC status:public|Submitter Id:E MTAB 11079 2:ZF1|age:6|broker name:ArrayExpress|cell type:renin lineage cell|common name:zebrafish|developmental stage:adult|genotype:ren:RFP; acta2:EGFP|individual:9 12 kidneys pooled|inferred cell type:juxtaglomerular cell|organism part:kidney|phenotype:wild type|sample name:E MTAB 11079 2:ZF1|sex:mixed|strain:WIK,,,,,,,,,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E MTAB 11079 2:ZF1 p,ZF1 p,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively.  Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA   specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,Experimental Factor: phenotype:wild type,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,size fractionation,PAIRED,ILLUMINA,NextSeq 500,,ERP135430,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,ZF1_S1_L002_I1_001.fastq.gz ZF1_S1_L002_R1_001.fastq.gz ZF1_S1_L002_R2_001.fastq.gz,fastq fastq fastq,39415722500.0,127973125.0,E MTAB 11079 2:ZF1 S1 L002,0:8 1:150 2:150,A:14261012964;C:6339158428;G:6467430919;T:11323758989;N:576200,8,150,150,,14261012964,6339158428,6467430919,11323758989,576200,ERX8137560,ERS10539828,ERA9016154,University Of Edinburgh|European Nucleotide Archive,University Of Edinburgh|European Nucleotide Archive,2,0.0,0.81065,0.0,0.08289,1.0,0.82434,,0.52903,150,150,T,B,mate1 technical by mapping diff,illumina,nextseq,unknown,size_fractionation,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-06-10,Adult,Adult,Multi-tissue,Multi-system
10406,ERR8527375,ERX8137560,ERS10539828,ERP135430,PRJEB50826,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E-MTAB-11079_2,Transcriptome Analysis,Libraries were made to compare the transcriptome of renin lineage cells RLCs from wild type versus ren knockout zebrafish kidneys. RLCs were FAC sorted  from pooled kidneys of ren+/+ or ren /  zebrafish  which carried ren:RFP and acta2:EGFP reporter genes  allowing the isolation of renin expressing cells and smooth muscle cells.,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,,Protocols: Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively. Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA  specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,ZF1,SAMEA12941032,University Of Edinburgh,ENA first public:2022 06 10|ENA last update:2022 06 10|External Id:SAMEA12941032|INSDC center alias:UOE|INSDC center name:University Of Edinburgh|INSDC first public:2022 06 10T00:18:52Z|INSDC last update:2022 06 10T00:18:52Z|INSDC status:public|Submitter Id:E MTAB 11079 2:ZF1|age:6|broker name:ArrayExpress|cell type:renin lineage cell|common name:zebrafish|developmental stage:adult|genotype:ren:RFP; acta2:EGFP|individual:9 12 kidneys pooled|inferred cell type:juxtaglomerular cell|organism part:kidney|phenotype:wild type|sample name:E MTAB 11079 2:ZF1|sex:mixed|strain:WIK,,,,,,,,,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,E MTAB 11079 2:ZF1 p,ZF1 p,scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,Mesonephric kidneys were isolated into ice cold Leibowitz medium. Cells were dissociated in medium supplemented with cold activated protease 20mg/ml  DNAse 400units/ml  Liberase 0.085mg/ml  collagenase 2mg/ml and CaCl2 5mM  at 6oC for 20 mins with frequent triturition. Samples were transferred to 28.5oC for an additional 10 mins to complete digestion. Digested kidneys were passed through a 40micron sieve prior to centrifugation. Cells were resuspended in PBS with 2% FCS for FAC sorting. A WIK mesonephric kidney was used to control for autofluorescence  and DAPI was used for the live/dead cell count. Samples were sorted for red and green fluorescence  in order to sort renin expressing cells and smooth muscle cells respectively.  Zebrafish were terminally anaesthetised tricaine methanesulphonate; MS 222 and decapitated. Lower abdomen was removed to expose kidney which was carefully teased away from the spine. Zebrafish were maintained in a Home Office approved establishment at 28.5oC under standard feeding and light regimen. Renin gene was targetted using CRISPR Cas9 technology. Briefly  an sgRNA   specifically targeting exon 2 of the renin gene  was complexed with tracr RNA and Cas9 protein and injected into a one cell embryo. Surviving fish were genotyped by tail clip and targeted fish were crossed onto WIKs. The genotype of F1 progeny was determined by sequencing across the target site and fish heterozygous for an 8bp deletion in renin exon 2 were crossed to generate ren /  knockout fish. Nucleic acid was extracted using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions. Nucleic acid library was constructed using the Chromium Single Cell three prime Library and Gel Bead kit v2 10X Genomics  PN 120237 and the Chromium Single Cell A Chip kit 10X Genomics  PN 120236 according to manufacturers instructions.,Experimental Factor: phenotype:wild type,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,size fractionation,PAIRED,ILLUMINA,NextSeq 500,,ERP135430,NextSeq 500 paired end sequencing; scRNAseq libraries of pooled kidney samples from wild type ZF1 versus CRISPR targeted renin knockout ZF2 zebrafish,ENA FIRST PUBLIC:2022 06 10|ENA LAST UPDATE:2022 06 10,ZF1_S1_L001_I1_001.fastq.gz ZF1_S1_L001_R1_001.fastq.gz ZF1_S1_L001_R2_001.fastq.gz,fastq fastq fastq,39744721324.0,129041303.0,E MTAB 11079 2:ZF1 S1 L001,0:8 1:150 2:150,A:15670316830;C:6278039908;G:6505806971;T:10257683184;N:544007,8,150,150,,15670316830,6278039908,6505806971,10257683184,544007,ERX8137560,ERS10539828,ERA9016154,University Of Edinburgh|European Nucleotide Archive,University Of Edinburgh|European Nucleotide Archive,2,0.0,0.81031,0.0,0.08495,1.0,0.82169,,0.51724,150,150,T,B,mate1 technical by mapping diff,illumina,nextseq,unknown,size_fractionation,unknown,sc,single_cell_droplet,10x,,United Kingdom,2022-06-10,Adult,Adult,Multi-tissue,Multi-system
28490,SRR26319601,SRX22027740,SRS19100857,SRP465070,PRJNA1025141,Danio rerio Raw sequence reads,PRJNA1025141,Other,Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep.,,,Treatment,CX3 for transcriptome 3,CX3,,strain:AB|cultivar:WT|ecotype:China: Jiangsu|age:7 dpf|dev stage:Larvae|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.67 E|treatment:Treatment Group|BioSampleModel:Model organism or animal,,,,,,,,,ALST3 for transcriptome 3,CX3 for transcriptome 3,CX3 for transcriptome 3,CX3 for transcriptome 3,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Ten,,SRP465070,,,Unknown_AY803-03T0006_good_1.fq.gz Unknown_AY803-03T0006_good_2.fq.gz,fastq fastq,6255596356.0,20929531.0,Unknown AY803 03T0006 good 1.fq.gz,0:149.44 1:149.44,A:1657365560;C:1463722268;G:1467057724;T:1667269298;N:181506,149,149,,,1657365560,1463722268,1467057724,1667269298,181506,SRX22027740,SRS19100857,SRA1727563,Soochow University|School of biology & basic medical sciences,Soochow University,2,0.89228,0.91654,0.09286,0.09714,0.6588,0.65604,0.4631,0.45773,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-10-11,Larval,Larval,Whole Organism,All anatomical structures
28491,SRR26319602,SRX22027739,SRS19100854,SRP465070,PRJNA1025141,Danio rerio Raw sequence reads,PRJNA1025141,Other,Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep.,,,Treatment,CX2 for transcriptome 2,CX2,,strain:AB|cultivar:WT|ecotype:China: Jiangsu|age:7 dpf|dev stage:Larvae|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.66 E|treatment:Treatment Group|BioSampleModel:Model organism or animal,,,,,,,,,ALST2 for transcriptome 2,CX2 for transcriptome 2,CX2 for transcriptome 2,CX2 for transcriptome 2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Ten,,SRP465070,,,Unknown_AY803-03T0005_good_1.fq.gz Unknown_AY803-03T0005_good_2.fq.gz,fastq fastq,6598066464.0,22061446.0,Unknown AY803 03T0005 good 1.fq.gz,0:149.54 1:149.54,A:1747291499;C:1543289262;G:1549193118;T:1758088368;N:204217,149,149,,,1747291499,1543289262,1549193118,1758088368,204217,SRX22027739,SRS19100854,SRA1727563,Soochow University|School of biology & basic medical sciences,Soochow University,2,0.88949,0.92148,0.08893,0.0947,0.65596,0.65228,0.46045,0.47087,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-10-11,Larval,Larval,Whole Organism,All anatomical structures
28492,SRR26319603,SRX22027738,SRS19100853,SRP465070,PRJNA1025141,Danio rerio Raw sequence reads,PRJNA1025141,Other,Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep.,,,Treatment,CX1 for transcriptome 1,CX1,,strain:AB|cultivar:WT|ecotype:China: Jiangsu|age:7 dpf|dev stage:Larvae|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.65 E|treatment:Treatment Group|BioSampleModel:Model organism or animal,,,,,,,,,ALST1 for transcriptome 1,CX1 for transcriptome 1,CX1 for transcriptome 1,CX1 for transcriptome 1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Ten,,SRP465070,,,Unknown_AY803-03T0004_good_1.fq.gz Unknown_AY803-03T0004_good_2.fq.gz,fastq fastq,6478923586.0,21662443.0,Unknown AY803 03T0004 good 1.fq.gz,0:149.54 1:149.54,A:1712718473;C:1518937459;G:1523570227;T:1723510437;N:186990,149,149,,,1712718473,1518937459,1523570227,1723510437,186990,SRX22027738,SRS19100853,SRA1727563,Soochow University|School of biology & basic medical sciences,Soochow University,2,0.89423,0.9176,0.08944,0.09254,0.6575,0.65458,0.4693,0.46842,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-10-11,Larval,Larval,Whole Organism,All anatomical structures
28493,SRR26319604,SRX22027737,SRS19100856,SRP465070,PRJNA1025141,Danio rerio Raw sequence reads,PRJNA1025141,Other,Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep.,,,Control,con3 for transcriptome 3,con3,,strain:AB|cultivar:Wild type|ecotype:China: Jiangsu suzhou|age:7 dpf|dev stage:Larvae phase|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.64 E|treatment:Control Group|BioSampleModel:Model organism or animal,,,,,,,,,con3 for transcriptome 3,con3 for transcriptome 3,con3 for transcriptome 3,con3 for transcriptome 3,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Ten,,SRP465070,,,Unknown_AY803-03T0003_good_2.fq.gz Unknown_AY803-03T0003_good_1.fq.gz,fastq fastq,6341537566.0,21218597.0,Unknown AY803 03T0003 good 1.fq.gz,0:149.43 1:149.43,A:1679811754;C:1483631833;G:1489430825;T:1688482904;N:180250,149,149,,,1679811754,1483631833,1489430825,1688482904,180250,SRX22027737,SRS19100856,SRA1727563,Soochow University|School of biology & basic medical sciences,Soochow University,2,0.88245,0.91856,0.09069,0.09654,0.66253,0.65817,0.46245,0.46336,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-10-11,Larval,Larval,Whole Organism,All anatomical structures
28494,SRR26319605,SRX22027736,SRS19100855,SRP465070,PRJNA1025141,Danio rerio Raw sequence reads,PRJNA1025141,Other,Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep.,,,Control,con2 for transcriptome 2,con2,,strain:AB|cultivar:Wild type|ecotype:China: Jiangsu suzhou|age:7 dpf|dev stage:Larvae phase|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.63 E|treatment:Control Group|BioSampleModel:Model organism or animal,,,,,,,,,con2 for transcriptome 2,con2 for transcriptome 2,con2 for transcriptome 2,con2 for transcriptome 2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Ten,,SRP465070,,,Unknown_AY803-03T0002_good_2.fq.gz Unknown_AY803-03T0002_good_1.fq.gz,fastq fastq,5709771178.0,19100144.0,Unknown AY803 03T0002 good 1.fq.gz,0:149.47 1:149.47,A:1505730979;C:1342843084;G:1346105868;T:1514941964;N:149283,149,149,,,1505730979,1342843084,1346105868,1514941964,149283,SRX22027736,SRS19100855,SRA1727563,Soochow University|School of biology & basic medical sciences,Soochow University,2,0.8924,0.91903,0.09155,0.09604,0.65902,0.65593,0.4634,0.46028,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-10-11,Larval,Larval,Whole Organism,All anatomical structures
28495,SRR26319606,SRX22027735,SRS19100852,SRP465070,PRJNA1025141,Danio rerio Raw sequence reads,PRJNA1025141,Other,Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep.,,,Control,con1 for transcriptome 1,con1,,strain:AB|cultivar:Wild type|ecotype:China: Jiangsu suzhou|age:7 dpf|dev stage:Larvae phase|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.62 E|treatment:Control Group|BioSampleModel:Model organism or animal,,,,,,,,,con1 for transcriptome 1,con1 for transcriptome 1,con1 for transcriptome 1,con1 for transcriptome 1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Ten,,SRP465070,,,Unknown_AY803-03T0001_good_1.fq.gz Unknown_AY803-03T0001_good_2.fq.gz,fastq fastq,6544586118.0,21872265.0,Unknown AY803 03T0001 good 1.fq.gz,0:149.61 1:149.61,A:1731179229;C:1528367346;G:1541103688;T:1743735521;N:200334,149,149,,,1731179229,1528367346,1541103688,1743735521,200334,SRX22027735,SRS19100852,SRA1727563,Soochow University|School of biology & basic medical sciences,Soochow University,2,0.87588,0.92739,0.08683,0.09494,0.65711,0.6504,0.46774,0.47072,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-10-11,Larval,Larval,Whole Organism,All anatomical structures
31514,SRR28435337,SRX24039257,SRS20832031,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,cry dash /  group 2 at CT 16,Cryd CT16G2,Unknown BA023 04T0008.fq.gz,,isolate:The second group of cry dash /  fish collected at CT 16.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:cry dash / |health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0008.fq.gz,Unknown BA023 04T0008.fq.gz,CT16 cry dash group2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0008_good_2.fq.gz Unknown_BA023-04T0008_good_1.fq.gz,fastq fastq,6928082472.0,23162452.0,Unknown BA023 04T0008 good 1.fq.gz,0:149.55 1:149.55,A:1783381005;C:1671764458;G:1686432861;T:1786331460;N:172688,149,149,,,1783381005,1671764458,1686432861,1786331460,172688,SRX24039257,SRS20832031,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.96107,0.96048,0.06638,0.06578,0.68546,0.68582,0.46626,0.45803,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31515,SRR28435338,SRX24039256,SRS20832030,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,cry dash /  group 1 at CT 16,Cryd CT16G1,Unknown BA023 04T0007.fq.gz,,isolate:The first group of cry dash /  fish collected at CT 16.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:cry dash / |health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0007.fq.gz,Unknown BA023 04T0007.fq.gz,CT16 cry dash group1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0007_good_2.fq.gz Unknown_BA023-04T0007_good_1.fq.gz,fastq fastq,7247045982.0,24239568.0,Unknown BA023 04T0007 good 1.fq.gz,0:149.49 1:149.49,A:1868252704;C:1747715656;G:1761213537;T:1869681292;N:182793,149,149,,,1868252704,1747715656,1761213537,1869681292,182793,SRX24039256,SRS20832030,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.95954,0.95937,0.0624,0.06218,0.68809,0.68765,0.47347,0.47429,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31516,SRR28435339,SRX24039255,SRS20832029,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,cry dash /  group 2 at CT 4,Cryd CT4G2,Unknown BA023 04T0006.fq.gz,,isolate:The second group of cry dash /  fish collected at CT 4.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:cry dash / |health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0006.fq.gz,Unknown BA023 04T0006.fq.gz,CT4 cry dash group2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0006_good_1.fq.gz Unknown_BA023-04T0006_good_2.fq.gz,fastq fastq,7467294282.0,24985127.0,Unknown BA023 04T0006 good 1.fq.gz,0:149.43 1:149.43,A:1940430660;C:1790773066;G:1798765445;T:1937139187;N:185924,149,149,,,1940430660,1790773066,1798765445,1937139187,185924,SRX24039255,SRS20832029,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.95702,0.95753,0.08848,0.08877,0.6829,0.68199,0.49417,0.49443,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31517,SRR28435340,SRX24039254,SRS20832028,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,cry dash /  group 1 at CT 4,Cryd CT4G1,Unknown BA023 04T0005.fq.gz,,isolate:The first group of cry dash /  fish collected at CT 4.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:cry dash / |health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0005.fq.gz,Unknown BA023 04T0005.fq.gz,CT4 cry dash group1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0005_good_1.fq.gz Unknown_BA023-04T0005_good_2.fq.gz,fastq fastq,6766310740.0,22646274.0,Unknown BA023 04T0005 good 1.fq.gz,0:149.39 1:149.39,A:1762324132;C:1615995203;G:1625767974;T:1762055354;N:168077,149,149,,,1762324132,1615995203,1625767974,1762055354,168077,SRX24039254,SRS20832028,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.95588,0.95587,0.06663,0.06633,0.67911,0.67888,0.46701,0.47626,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31518,SRR28435341,SRX24039253,SRS20832027,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,WT group 2 at CT 16,WT CT16G2,Unknown BA023 04T0004.fq.gz,,isolate:The second group of WT fish collected at CT 16.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:wildtype|health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0004.fq.gz,Unknown BA023 04T0004.fq.gz,CT6 WT group2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0004_good_2.fq.gz Unknown_BA023-04T0004_good_1.fq.gz,fastq fastq,6830283170.0,22847843.0,Unknown BA023 04T0004 good 1.fq.gz,0:149.47 1:149.47,A:1791839697;C:1618554485;G:1627518993;T:1792199298;N:170697,149,149,,,1791839697,1618554485,1627518993,1792199298,170697,SRX24039253,SRS20832027,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.9515,0.94997,0.08493,0.08422,0.67178,0.67316,0.47915,0.48187,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31519,SRR28435342,SRX24039252,SRS20832026,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,WT group 1 at CT 16,WT CT16G1,Unknown BA023 04T0003.fq.gz,,isolate:The first group of WT fish collected at CT 16.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:wildtype|health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0003.fq.gz,Unknown BA023 04T0003.fq.gz,CT6 WT group1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0003_good_1.fq.gz Unknown_BA023-04T0003_good_2.fq.gz,fastq fastq,6430546584.0,21512133.0,Unknown BA023 04T0003 good 1.fq.gz,0:149.46 1:149.46,A:1678015842;C:1530296350;G:1541505212;T:1680568743;N:160437,149,149,,,1678015842,1530296350,1541505212,1680568743,160437,SRX24039252,SRS20832026,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.94974,0.95051,0.08145,0.0819,0.6775,0.67848,0.47999,0.47986,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31520,SRR28435343,SRX24039251,SRS20832025,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,WT group 2 at CT 4,WT CT4G2,Unknown BA023 04T0002.fq.gz,,isolate:The second group of WT fish collected at CT 4.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:wildtype|health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0002.fq.gz,Unknown BA023 04T0002.fq.gz,CT4 WT group2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0002_good_1.fq.gz Unknown_BA023-04T0002_good_2.fq.gz,fastq fastq,7084078326.0,23701315.0,Unknown BA023 04T0002 good 1.fq.gz,0:149.44 1:149.44,A:1855453089;C:1679520129;G:1688607029;T:1860319577;N:178502,149,149,,,1855453089,1679520129,1688607029,1860319577,178502,SRX24039251,SRS20832025,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.95393,0.95431,0.07799,0.07802,0.66728,0.66835,0.46237,0.47322,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
31521,SRR28435344,SRX24039250,SRS20832024,SRP497569,PRJNA1090643,Danio rerio Raw sequence reads,PRJNA1090643,Other,The transcriptome of WT and cry dash /  mutant are tested at CT 4 and CT 16.,,,WT group 1 at CT 4,WT CT4G1,Unknown BA023 04T0001.fq.gz,,isolate:The first group of WT fish collected at CT 4.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:wildtype|health state:Health|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae,Unknown BA023 04T0001.fq.gz,Unknown BA023 04T0001.fq.gz,CT4 WT group1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP497569,,,Unknown_BA023-04T0001_good_2.fq.gz Unknown_BA023-04T0001_good_1.fq.gz,fastq fastq,7360015710.0,24625447.0,Unknown BA023 04T0001 good 1.fq.gz,0:149.44 1:149.44,A:1931324589;C:1743134275;G:1748699685;T:1936672740;N:184421,149,149,,,1931324589,1743134275,1748699685,1936672740,184421,SRX24039250,SRS20832024,SRA1832685,Soochow University|School of Biology & Basic Medical Sciences,Soochow University,2,0.954,0.95301,0.08257,0.08182,0.66772,0.66906,0.47505,0.47577,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2024-03-25,Larval,Larval,Undetermined,Undetermined
32923,SRR29498567,SRX25008885,SRS21709104,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F2g,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:gut|identifier:F2g|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,10,10,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F2g_R2.fq.gz F2g_R1.fq.gz,fastq fastq,9101949000.0,30339830.0,F2g R1.fq.gz,0:150 1:150,A:2052853923;C:2394247721;G:2773304460;T:1881440199;N:102697,150,150,,,2052853923,2394247721,2773304460,1881440199,102697,SRX25008885,SRS21709104,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.65449,0.37434,0.04313,0.12258,0.99519,0.99527,0.61425,0.56139,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Gut,Digestive System
32924,SRR29498568,SRX25008884,SRS21709103,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F1g,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:gut|identifier:F1g|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,09,09,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F1g_R1.fq.gz F1g_R2.fq.gz,fastq fastq,8132653500.0,27108845.0,F1g R1.fq.gz,0:150 1:150,A:1811779602;C:2095863397;G:2529881799;T:1695036688;N:92014,150,150,,,1811779602,2095863397,2529881799,1695036688,92014,SRX25008884,SRS21709103,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.53909,0.24181,0.01966,0.04797,0.99598,0.99624,0.59302,0.62038,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Gut,Digestive System
32925,SRR29498569,SRX25008883,SRS21709102,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M2l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:liver|identifier:M2l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,08,08,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M2l_R1.fq.gz M2l_R2.fq.gz,fastq fastq,7733826600.0,25779422.0,M2l R1.fq.gz,0:150 1:150,A:1754773283;C:2022716836;G:2330439864;T:1625790112;N:106505,150,150,,,1754773283,2022716836,2330439864,1625790112,106505,SRX25008883,SRS21709102,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.60941,0.31539,0.0377,0.09053,0.995,0.99478,0.50937,0.57123,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32926,SRR29498570,SRX25008882,SRS21709101,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M2b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:brain|identifier:M2b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,07,07,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M2b_R1.fq.gz M2b_R2.fq.gz,fastq fastq,9324874800.0,31082916.0,M2b R1.fq.gz,0:150 1:150,A:2073617286;C:2382074775;G:2948687855;T:1920389281;N:105603,150,150,,,2073617286,2382074775,2948687855,1920389281,105603,SRX25008882,SRS21709101,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.57388,0.29571,0.04187,0.10168,0.99506,0.99513,0.61677,0.60641,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
32927,SRR29498571,SRX25008881,SRS21709100,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M1l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:liver|identifier:M1l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,06,06,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M1l_R2.fq.gz M1l_R1.fq.gz,fastq fastq,8301268800.0,27670896.0,M1l R1.fq.gz,0:150 1:150,A:1856070257;C:2266693166;G:2413641098;T:1764769457;N:94822,150,150,,,1856070257,2266693166,2413641098,1764769457,94822,SRX25008881,SRS21709100,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.8289,0.73852,0.21964,0.50932,0.99648,0.99701,0.57332,0.51129,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32928,SRR29498572,SRX25008880,SRS21709099,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M1b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:brain|identifier:M1b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,05,05,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M1b_R1.fq.gz M1b_R2.fq.gz,fastq fastq,7947472800.0,26491576.0,M1b R1.fq.gz,0:150 1:150,A:1764190500;C:1937842699;G:2595509352;T:1649839967;N:90282,150,150,,,1764190500,1937842699,2595509352,1649839967,90282,SRX25008880,SRS21709099,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96542,0.21476,0.17288,0.05982,0.97289,0.99711,0.57845,0.611,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
32929,SRR29498573,SRX25008879,SRS21709098,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F2l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:liver|identifier:F2l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,04,04,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F2l_R1.fq.gz F2l_R2.fq.gz,fastq fastq,8701893900.0,29006313.0,F2l R1.fq.gz,0:150 1:150,A:1977580339;C:2299061131;G:2585058451;T:1840095650;N:98329,150,150,,,1977580339,2299061131,2585058451,1840095650,98329,SRX25008879,SRS21709098,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.72425,0.57704,0.15111,0.37121,0.99744,0.99762,0.61161,0.55762,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32930,SRR29498574,SRX25008878,SRS21709097,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F2b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:brain|identifier:F2b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,03,03,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F2b_R1.fq.gz F2b_R2.fq.gz,fastq fastq,9249410100.0,30831367.0,F2b R1.fq.gz,0:150 1:150,A:2101671138;C:2272479255;G:2931272789;T:1943881150;N:105768,150,150,,,2101671138,2272479255,2931272789,1943881150,105768,SRX25008878,SRS21709097,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96654,0.19343,0.23127,0.08081,0.95272,0.99326,0.63762,0.64901,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
32931,SRR29498575,SRX25008877,SRS21709096,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M2g,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:gut|identifier:M2g|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,12,12,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M2g_R1.fq.gz M2g_R2.fq.gz,fastq fastq,7106243100.0,23687477.0,M2g R1.fq.gz,0:150 1:150,A:1567154123;C:1866065312;G:2213286944;T:1459656676;N:80045,150,150,,,1567154123,1866065312,2213286944,1459656676,80045,SRX25008877,SRS21709096,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.56476,0.25026,0.02259,0.04481,0.99667,0.99701,0.63277,0.65693,150,150,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Gut,Digestive System
32932,SRR29498576,SRX25008876,SRS21709095,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,M1g,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:male|tissue:gut|identifier:M1g|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,11,11,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,M1g_R2.fq.gz M1g_R1.fq.gz,fastq fastq,7351182000.0,24503940.0,M1g R1.fq.gz,0:150 1:150,A:1623685246;C:1858847576;G:2315396486;T:1553169371;N:83321,150,150,,,1623685246,1858847576,2315396486,1553169371,83321,SRX25008876,SRS21709095,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96004,0.21521,0.16113,0.04578,0.92431,0.99143,0.61867,0.63432,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Gut,Digestive System
32933,SRR29498577,SRX25008875,SRS21709094,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F1l,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:liver|identifier:F1l|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,02,02,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F1l_R2.fq.gz F1l_R1.fq.gz,fastq fastq,4647564000.0,15491880.0,F1l R1.fq.gz,0:150 1:150,A:993332389;C:862184908;G:1814249126;T:977710185;N:87392,150,150,,,993332389,862184908,1814249126,977710185,87392,SRX25008875,SRS21709094,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.88683,0.14922,0.24654,0.08178,0.9583,0.99819,0.70978,0.20254,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Liver,Liver and Biliary System
32934,SRR29498578,SRX25008874,SRS21709093,SRP515416,PRJNA1127032,Zebrafish Tissue Mid Range RNA Sequencing,PRJNA1127032,Other,This project sequenced mid size ranged RNA from zebrafish liver  brain  and gut tissues  using male and female parallel samples.,,,,,F1b,,strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:brain|identifier:F1b|BioSampleModel:Model organism or animal,,,,,,,,,midRNA seq Danio rerio,01,01,Total RNA was extracted from different zebrafish tissues  using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP515416,,,F1b_R2.fq.gz F1b_R1.fq.gz,fastq fastq,7995852300.0,26652841.0,F1b R1.fq.gz,0:150 1:150,A:1744452113;C:2053788787;G:2580416325;T:1617104387;N:90688,150,150,,,1744452113,2053788787,2580416325,1617104387,90688,SRX25008874,SRS21709093,SRA1905460,Eotvos Lorand University|Genetics,Eotvos Lorand University,2,0.96107,0.17798,0.16452,0.02921,0.96759,0.99677,0.66455,0.62672,150,150,B,T,mate2 technical by mapping diff,illumina,novaseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Hungary,2024-06-22,Adult,Adult,Brain,Nervous System
41348,SRR4302022,SRX2194190,SRS1716514,SRP090540,PRJNA344550,Danio rerio strain:AB Raw sequence reads,PRJNA344550,Whole Genome Sequencing,Identification of circular RNAs in zebrafish,,pubmed:27878987,,,Zebrafish circRNA,,strain:AB|age:Adult|sex:pooled male and female|tissue:brain  eyes  heart  liver  spleen  kidney  intestines  skin  muscle  gill  ovary  testis|BioSampleModel:Model organism or animal,,,,,,,,,Identification of circular RNAs in zebrafish,Zebrafish circRNAs,Key Lab of Agricultural Animal Genetics,1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 4000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP090540,,,MIX_R1.fastq.gz MIX_R2.fastq.gz,fastq fastq,21319208400.0,71064028.0,Zebrafish circRNAs,0:150 1:150,A:4973737880;C:5734846860;G:5920594296;T:4689011877;N:1017487,150,150,,,4973737880,5734846860,5920594296,4689011877,1017487,SRX2194190,SRS1716514,SRA480645,Huazhong Agricultural University|Key Lab of Agricultural Animal Genetics,Huazhong Agricultural University,2,0.89959,0.92292,0.28429,0.27588,0.87207,0.86866,0.65238,0.78485,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,China,2016-11-28,Adult,Adult,Multi-tissue,Multi-system
42495,SRR5666979,SRX2902577,SRS2269173,SRP108989,PRJNA390119,HLX & Hematopoiesis,PRJNA390119,Other,HLX &amp; Hematopoiesis,,,rnaseq and atacseq,hlx hematopoiesis,hlx,,isolate:multiisolates|age:N/A|sex:pooled male and female|tissue:heart|BioSampleModel:Model organism or animal,,,,,,,,,kdrl GFP cells hlx1  MO rep2,3,kdrl GFP cells hlx1  MO rep2,SMART SEQ ultra low RNA seq kit Clonetech,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>150</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP108989,,assembly:danRer10,flk_gfp_hlx_8ng_48hrs_2_R1.fastq.gz flk_gfp_hlx_8ng_48hrs_2_R2.fastq.gz,fastq fastq,1887289200.0,12581928.0,flk gfp hlx 8ng 48hrs 2 R1.fastq.gz,0:75 1:75,A:493825524;C:448630716;G:436118597;T:508410442;N:303921,75,75,,,493825524,448630716,436118597,508410442,303921,SRX2902577,SRS2269173,SRA573518,BRFAA|Molecular Biology,BRFAA,2,0.9202,0.9216,0.09499,0.09558,0.73805,0.73878,0.48809,0.48787,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Greece,2017-06-13,Undetermined,Undetermined,Heart,Cardiovascular System
42496,SRR5666980,SRX2902576,SRS2269173,SRP108989,PRJNA390119,HLX & Hematopoiesis,PRJNA390119,Other,HLX &amp; Hematopoiesis,,,rnaseq and atacseq,hlx hematopoiesis,hlx,,isolate:multiisolates|age:N/A|sex:pooled male and female|tissue:heart|BioSampleModel:Model organism or animal,,,,,,,,,kdrl GFP cells hlx1  MO rep1,2,kdrl GFP cells hlx1  MO rep1,SMART SEQ ultra low RNA seq kit Clonetech,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>150</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP108989,,assembly:danRer10,flk_gfp_hlx_8ng_48hrs_1_R1.fastq.gz flk_gfp_hlx_8ng_48hrs_1_R2.fastq.gz,fastq fastq,1561083900.0,10407226.0,flk gfp hlx 8ng 48hrs 1 R2.fastq.gz,0:75 1:75,A:412744284;C:366776465;G:356834742;T:424473871;N:254538,75,75,,,412744284,366776465,356834742,424473871,254538,SRX2902576,SRS2269173,SRA573518,BRFAA|Molecular Biology,BRFAA,2,0.9172,0.91824,0.09957,0.09961,0.73965,0.73975,0.48906,0.48977,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Greece,2017-06-13,Undetermined,Undetermined,Heart,Cardiovascular System
42497,SRR5666981,SRX2902575,SRS2269173,SRP108989,PRJNA390119,HLX & Hematopoiesis,PRJNA390119,Other,HLX &amp; Hematopoiesis,,,rnaseq and atacseq,hlx hematopoiesis,hlx,,isolate:multiisolates|age:N/A|sex:pooled male and female|tissue:heart|BioSampleModel:Model organism or animal,,,,,,,,,kdrl GFP cells control 2,1,kdrl GFP cells control 2,SMART SEQ ultra low RNA seq kit Clonetech,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>150</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP108989,,assembly:danRer10,flk_gfp_48hrs_con2_R1.fastq.gz flk_gfp_48hrs_con2_R2.fastq.gz,fastq fastq,2042164500.0,13614430.0,flk gfp 48hrs con2 R1.fastq.gz,0:75 1:75,A:537008617;C:483956616;G:465380092;T:555490621;N:328554,75,75,,,537008617,483956616,465380092,555490621,328554,SRX2902575,SRS2269173,SRA573518,BRFAA|Molecular Biology,BRFAA,2,0.91492,0.91762,0.10575,0.10669,0.75519,0.75546,0.49482,0.49617,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Greece,2017-06-13,Undetermined,Undetermined,Heart,Cardiovascular System
42498,SRR5666982,SRX2902574,SRS2269173,SRP108989,PRJNA390119,HLX & Hematopoiesis,PRJNA390119,Other,HLX &amp; Hematopoiesis,,,rnaseq and atacseq,hlx hematopoiesis,hlx,,isolate:multiisolates|age:N/A|sex:pooled male and female|tissue:heart|BioSampleModel:Model organism or animal,,,,,,,,,kdrl GFP cells control 1,0,kdrl GFP cells control 1,SMART SEQ ultra low RNA seq kit Clonetech,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>150</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP108989,,assembly:danRer10,flk_gfp_48hrs_con1_R2.fastq.gz flk_gfp_48hrs_con1_R1.fastq.gz,fastq fastq,1678987200.0,11193248.0,flk gfp 48hrs con1 R2.fastq.gz,0:75 1:75,A:437283407;C:401234553;G:387947515;T:452257282;N:264443,75,75,,,437283407,401234553,387947515,452257282,264443,SRX2902574,SRS2269173,SRA573518,BRFAA|Molecular Biology,BRFAA,2,0.91593,0.91737,0.08937,0.08988,0.75607,0.75696,0.50103,0.45539,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Greece,2017-06-13,Undetermined,Undetermined,Heart,Cardiovascular System
42499,SRR5666985,SRX2902571,SRS2269173,SRP108989,PRJNA390119,HLX & Hematopoiesis,PRJNA390119,Other,HLX &amp; Hematopoiesis,,,rnaseq and atacseq,hlx hematopoiesis,hlx,,isolate:multiisolates|age:N/A|sex:pooled male and female|tissue:heart|BioSampleModel:Model organism or animal,,,,,,,,,fli GFP cells hHLXOE rep 2,5,fli GFP cells hHLXOE rep 2,SMART SEQ ultra low RNA seq kit Clonetech,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>150</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP108989,,assembly:danRer10,fli_gal4_uas_hlx_endo_48h_s2_R2.fastq.gz fli_gal4_uas_hlx_endo_48h_s2_R1.fastq.gz,fastq fastq,4490898450.0,29939323.0,fli gal4 uas hlx endo 48h s2 R2.fastq.gz,0:75 1:75,A:870349076;C:1346136891;G:1401796534;T:869066463;N:3549486,75,75,,,870349076,1346136891,1401796534,869066463,3549486,SRX2902571,SRS2269173,SRA573518,BRFAA|Molecular Biology,BRFAA,2,0.5714,0.57344,0.27957,0.28321,0.85102,0.85342,0.53304,0.53368,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Greece,2017-06-13,Undetermined,Undetermined,Heart,Cardiovascular System
42500,SRR5666986,SRX2902570,SRS2269173,SRP108989,PRJNA390119,HLX & Hematopoiesis,PRJNA390119,Other,HLX &amp; Hematopoiesis,,,rnaseq and atacseq,hlx hematopoiesis,hlx,,isolate:multiisolates|age:N/A|sex:pooled male and female|tissue:heart|BioSampleModel:Model organism or animal,,,,,,,,,fli GFP cells hHLXOE rep 1,4,fli GFP cells hHLXOE rep 1,SMART SEQ ultra low RNA seq kit Clonetech,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>150</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP108989,,assembly:danRer10,fli_gal4_uas_hlx_endo_48h_s1_R1.fastq.gz fli_gal4_uas_hlx_endo_48h_s1_R2.fastq.gz,fastq fastq,3459602100.0,23064014.0,fli gal4 uas hlx endo 48h s1 R1.fastq.gz,0:75 1:75,A:658343595;C:1050309687;G:1097759573;T:650443491;N:2745754,75,75,,,658343595,1050309687,1097759573,650443491,2745754,SRX2902570,SRS2269173,SRA573518,BRFAA|Molecular Biology,BRFAA,2,0.57077,0.57481,0.2173,0.2185,0.79553,0.79762,0.50405,0.48708,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Greece,2017-06-13,Undetermined,Undetermined,Heart,Cardiovascular System
48625,SRR7280652,SRX4184230,SRS3395609,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,,Telencephalon,Brain Telenc,,strain:AB|age:adult|sex:pooled male and female|tissue:Telencephalon|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: telencephalon,Brain Telenc,Brain Telenc,RNA from dissociated telencephalons of males and females,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Brain_Telenc_R1-125.fq.gz Brain_Telenc_R2-125.fq.gz,fastq fastq,71366993000.0,285467972.0,Brain Telenc R1 125.fq.gz,0:125 1:125,A:19965884492;C:15794543428;G:15865015134;T:19703234174;N:38315772,125,125,,,19965884492,15794543428,15865015134,19703234174,38315772,SRX4184230,SRS3395609,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.94146,0.94273,0.14194,0.14162,0.70167,0.70396,0.52125,0.51616,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Adult,Adult,Brain,Nervous System
48626,SRR7280653,SRX4184229,SRS3395610,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,,Cerebellum,Cerebellum,,strain:AB|age:adult|sex:pooled male and female|tissue:Cerebellum|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: cerebellum,Cerebellum,Cerebellum,RNA from dissociated cerebellum from males and females,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Cerebellum_R1-125.fq.gz Cerebellum_R2-125.fq.gz,fastq fastq,34135866750.0,136543467.0,Cerebellum R2 125.fq.gz,0:125 1:125,A:9659073468;C:7434102293;G:7478952142;T:9549216912;N:14521935,125,125,,,9659073468,7434102293,7478952142,9549216912,14521935,SRX4184229,SRS3395610,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.93517,0.93417,0.16496,0.16457,0.73695,0.73476,0.47363,0.48287,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Adult,Adult,Brain,Nervous System
48627,SRR7280654,SRX4184228,SRS3395608,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,Pool of one hundred 2hpf embryos,2hpf embryos,Embr 2hpf,,strain:AB|dev stage:2hpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 2hpf embryos,Embr 2hpf,Embr 2hpf,RNA extracted from a pool of one hundred embryos,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Embr_2hpf_R2-125.fq.gz Embr_2hpf_R1-125.fq.gz,fastq fastq,17109578000.0,68438312.0,Embr 2hpf R1 125.fq.gz,0:125 1:125,A:4536550134;C:4009266695;G:4076560218;T:4484964079;N:2236874,125,125,,,4536550134,4009266695,4076560218,4484964079,2236874,SRX4184228,SRS3395608,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.96221,0.96458,0.02765,0.02716,0.77116,0.77325,0.48649,0.4853,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Cleavage,Embryo,Trunk,Surface Structure
48628,SRR7280655,SRX4184227,SRS3395607,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,Pool of one hundred 8hpf embryos,8hpf embryos,Embr 8hpf,,strain:AB|dev stage:8hpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 8hpf embryos,Embr 8hpf,Embr 8hpf,RNA extracted from a pool of one hundred embryos,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Embr_8hpf_R1-125.fq.gz Embr_8hpf_R2-125.fq.gz,fastq fastq,20486524750.0,81946099.0,Embr 8hpf R2 125.fq.gz,0:125 1:125,A:5437735333;C:4808439456;G:4859422420;T:5377132981;N:3794560,125,125,,,5437735333,4808439456,4859422420,5377132981,3794560,SRX4184227,SRS3395607,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.96373,0.95763,0.07096,0.0702,0.75937,0.75866,0.48455,0.484,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Gastrula,Embryo,Trunk,Surface Structure
48629,SRR7280656,SRX4184226,SRS3395606,SRP149913,PRJNA474911,Origin and Evolution of Neural Microexons,PRJNA474911,Other,"Our study focuses on the origin of the neural microexon program.We discover that neural microexon programs are present in non vertebrate speciesand trace their origin to bilaterian ancestors through the emergenceof a previously uncharacterized ""enhancer of microexon"" eMIC protein domain",,,Pool of one hundred 12hpf embryos,12hpf embryos,Embr 12hpf,,strain:AB|dev stage:12hpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: 12hpf embryos,Embr 12hpf,Embr 12hpf,RNA extracted from a pool of one hundred embryos,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP149913,,,Embr_12hpf_R2-125.fq.gz Embr_12hpf_R1-125.fq.gz,fastq fastq,22366284500.0,89465138.0,Embr 12hpf R1 125.fq.gz,0:125 1:125,A:5886492098;C:5284016845;G:5382041408;T:5809628253;N:4105896,125,125,,,5886492098,5284016845,5382041408,5809628253,4105896,SRX4184226,SRS3395606,SRA717220,Centre for Genomic Regulation|Systems Biology Department,Centre for Genomic Regulation,2,0.96226,0.96763,0.06393,0.06451,0.74355,0.74472,0.48233,0.48387,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Spain,2019-01-22,Segmentation,Embryo,Trunk,Surface Structure
49091,SRR7666344,SRX4527573,SRS3645455,SRP157045,PRJNA485433,Diurnal transcriptome of adult zebrafish eye,PRJNA485433,Other,Circadian rhythms orchestrate organism physiology to rhythmic changes in the environment  with the daily day and night cycle being the most prominent cyclic change occurring. In this regard  retina being a light responsive organ shows its vital physiological processes to be regulated by the clock. Here we report the diurnal transcriptome of zebrafish retina at Zt4day and Zt16night. We found 39% and 31% of the known genes to be expressed in retina at Zt4 and Zt16 respectively Reference genome Zv9. Also  by applying stringent cutoff of 5FPKM we identified 123 transcripts to be expressed differentially between the two time points  which contains few novel transcripts. In future  this study will contribute to the understanding of organ and species specific regulation of circadian rhythms and will also provide novel genes involved in the circadian regulation of retina.,,,,,ZT4,,strain:Assam wild type|age:>3 month|dev stage:adult|sex:pooled male and female|tissue:eye|BioSampleModel:Model organism or animal,,,,,,,,,diurnal trancriptome of retina,ZT4 101nt,ZT4 101nt,total transcriptome with Truseq stranded library,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP157045,,,ZF_Eye_CT4_gt50_R1_P.fastq ZF_Eye_CT4_gt50_R2_P.fastq,fastq fastq,4550334348.0,22527137.0,ZF Eye CT4 gt50 R1 P.fastq,0:101.00 1:101.00,A:1196463938;C:1068045211;G:1064853438;T:1220233324;N:738437,101,101,,,1196463938,1068045211,1064853438,1220233324,738437,SRX4527573,SRS3645455,SRA756783,CSIR Insitute of Genomics and Integrative Biology|Functional Genomics,CSIR Insitute of Genomics and Integrative Biology,2,0.92663,0.92909,0.33125,0.32333,0.70197,0.7013,0.55991,0.52684,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,India,2018-12-27,Adult,Adult,Eye,Sensory System
49092,SRR7666345,SRX4527572,SRS3645456,SRP157045,PRJNA485433,Diurnal transcriptome of adult zebrafish eye,PRJNA485433,Other,Circadian rhythms orchestrate organism physiology to rhythmic changes in the environment  with the daily day and night cycle being the most prominent cyclic change occurring. In this regard  retina being a light responsive organ shows its vital physiological processes to be regulated by the clock. Here we report the diurnal transcriptome of zebrafish retina at Zt4day and Zt16night. We found 39% and 31% of the known genes to be expressed in retina at Zt4 and Zt16 respectively Reference genome Zv9. Also  by applying stringent cutoff of 5FPKM we identified 123 transcripts to be expressed differentially between the two time points  which contains few novel transcripts. In future  this study will contribute to the understanding of organ and species specific regulation of circadian rhythms and will also provide novel genes involved in the circadian regulation of retina.,,,,,ZT16,,strain:Assam wild type|age:>3months|dev stage:adult|sex:pooled male and female|tissue:eye|BioSampleModel:Model organism or animal,,,,,,,,,diurnal transcriptome of retina,ZT16 101nt,ZT16 101nt,total transcriptome with Truseq stranded library,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP157045,,,ZF_Eye_CT016_gt50_R1_P.fastq ZF_Eye_CT016_gt50_R2_P.fastq,fastq fastq,14656436974.0,72560331.0,ZF Eye CT016 gt50 R1 P.fastq,0:100.99 1:100.99,A:3573626926;C:3724443056;G:3714836422;T:3641178568;N:2352002,100,100,,,3573626926,3724443056,3714836422,3641178568,2352002,SRX4527572,SRS3645456,SRA756783,CSIR Insitute of Genomics and Integrative Biology|Functional Genomics,CSIR Insitute of Genomics and Integrative Biology,2,0.917,0.91899,0.27178,0.261,0.72135,0.72082,0.63885,0.63571,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,India,2018-08-10,Adult,Adult,Eye,Sensory System
53507,SRR9899207,SRX6651058,SRS5212730,SRP217299,PRJNA558506,Bmpr2b mutant zebrafish sequencing,PRJNA558506,Other,In order to explore the differential expression genes and related pathways caused by bmpr2b deletion in zebrafish. The comparative transcriptome analysis between wild and mutant samples was conducted.,,,,,zebrafish bmpr2b mutant,,strain:AB zebrafish|isolate:mutant|breed:zebrafish|cultivar:zebrafish|ecotype:Wuhan  China|age:15 days|dev stage:larval fish|sex:unknown|tissue:skeleton  muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of mutant fish,mutant1,mutant1,Total RNA was isolated from the 15 dpf dpf bmpr2b mutant larval fishes using RNAiso Plus Reagent TaKaRa  China according to the manufacturers protocol. post RNA quality and quantity control  the transcriptome equencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina NEB  USA following manufacturers recommendations and index codes were added to attribute sequences to each sample.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP217299,,,m1_1.fq.gz m1_2.fq.gz,fastq fastq,8332769700.0,27775899.0,m1 1.fq.gz,0:150 1:150,A:2157086519;C:2009631895;G:2036110721;T:2129846686;N:93879,150,150,,,2157086519,2009631895,2036110721,2129846686,93879,SRX6651058,SRS5212730,SRA932406,"Huazhong Agricultural University|College of Fisheries, Key Lab of Freshwater Animal",Huazhong Agricultural University,2,0.95476,0.95486,0.06414,0.06413,0.66115,0.66156,0.47619,0.47307,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,China,2019-08-03,Larval,Larval,Muscle,Muscular System
53508,SRR9899208,SRX6651057,SRS5212731,SRP217299,PRJNA558506,Bmpr2b mutant zebrafish sequencing,PRJNA558506,Other,In order to explore the differential expression genes and related pathways caused by bmpr2b deletion in zebrafish. The comparative transcriptome analysis between wild and mutant samples was conducted.,,,,,zebrafish wild,,strain:AB zebrafish|isolate:wild fish|breed:zebrafish|cultivar:zebrafish|ecotype:Wuhan  China|age:15 days|dev stage:larval fish|sex:unknown|tissue:skeleton  muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of wild fish,wild3,wild3,Total RNA was isolated from the 15 dpf dpf wild larval fishes using RNAiso Plus Reagent TaKaRa  China according to the manufacturers protocol. post RNA quality and quantity control  the transcriptome equencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina NEB  USA following manufacturers recommendations and index codes were added to attribute sequences to each sample.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP217299,,,w3_1.fq.gz w3_2.fq.gz,fastq fastq,8715170100.0,29050567.0,w3 1.fq.gz,0:150 1:150,A:2265881414;C:2090871457;G:2123814411;T:2234503490;N:99328,150,150,,,2265881414,2090871457,2123814411,2234503490,99328,SRX6651057,SRS5212731,SRA932406,"Huazhong Agricultural University|College of Fisheries, Key Lab of Freshwater Animal",Huazhong Agricultural University,2,0.95085,0.95146,0.06684,0.0667,0.65886,0.6588,0.47356,0.48005,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,China,2019-08-03,Larval,Larval,Muscle,Muscular System
53509,SRR9899209,SRX6651056,SRS5212731,SRP217299,PRJNA558506,Bmpr2b mutant zebrafish sequencing,PRJNA558506,Other,In order to explore the differential expression genes and related pathways caused by bmpr2b deletion in zebrafish. The comparative transcriptome analysis between wild and mutant samples was conducted.,,,,,zebrafish wild,,strain:AB zebrafish|isolate:wild fish|breed:zebrafish|cultivar:zebrafish|ecotype:Wuhan  China|age:15 days|dev stage:larval fish|sex:unknown|tissue:skeleton  muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of wild fish,wild2,wild2,Total RNA was isolated from the 15 dpf dpf wild larval fishes using RNAiso Plus Reagent TaKaRa  China according to the manufacturers protocol. post RNA quality and quantity control  the transcriptome equencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina NEB  USA following manufacturers recommendations and index codes were added to attribute sequences to each sample.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP217299,,,w2_1.fq.gz w2_2.fq.gz,fastq fastq,9346269600.0,31154232.0,w2 1.fq.gz,0:150 1:150,A:2421899244;C:2254190061;G:2283375277;T:2386698720;N:106298,150,150,,,2421899244,2254190061,2283375277,2386698720,106298,SRX6651056,SRS5212731,SRA932406,"Huazhong Agricultural University|College of Fisheries, Key Lab of Freshwater Animal",Huazhong Agricultural University,2,0.95445,0.95603,0.06361,0.06276,0.6616,0.66121,0.47635,0.47716,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,China,2019-08-03,Larval,Larval,Muscle,Muscular System
53510,SRR9899210,SRX6651055,SRS5212731,SRP217299,PRJNA558506,Bmpr2b mutant zebrafish sequencing,PRJNA558506,Other,In order to explore the differential expression genes and related pathways caused by bmpr2b deletion in zebrafish. The comparative transcriptome analysis between wild and mutant samples was conducted.,,,,,zebrafish wild,,strain:AB zebrafish|isolate:wild fish|breed:zebrafish|cultivar:zebrafish|ecotype:Wuhan  China|age:15 days|dev stage:larval fish|sex:unknown|tissue:skeleton  muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of wild fish,wild1,wild1,Total RNA was isolated from the 15 dpf dpf wild larval fishes using RNAiso Plus Reagent TaKaRa  China according to the manufacturers protocol. post RNA quality and quantity control  the transcriptome equencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina NEB  USA following manufacturers recommendations and index codes were added to attribute sequences to each sample.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP217299,,,w1_1.fq.gz w1_2.fq.gz,fastq fastq,8756101500.0,29187005.0,w1 1.fq.gz,0:150 1:150,A:2274557262;C:2102935324;G:2133197715;T:2245310628;N:100571,150,150,,,2274557262,2102935324,2133197715,2245310628,100571,SRX6651055,SRS5212731,SRA932406,"Huazhong Agricultural University|College of Fisheries, Key Lab of Freshwater Animal",Huazhong Agricultural University,2,0.95161,0.95225,0.06682,0.06678,0.65831,0.65993,0.47144,0.47166,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,China,2019-08-03,Larval,Larval,Muscle,Muscular System
53511,SRR9899211,SRX6651054,SRS5212730,SRP217299,PRJNA558506,Bmpr2b mutant zebrafish sequencing,PRJNA558506,Other,In order to explore the differential expression genes and related pathways caused by bmpr2b deletion in zebrafish. The comparative transcriptome analysis between wild and mutant samples was conducted.,,,,,zebrafish bmpr2b mutant,,strain:AB zebrafish|isolate:mutant|breed:zebrafish|cultivar:zebrafish|ecotype:Wuhan  China|age:15 days|dev stage:larval fish|sex:unknown|tissue:skeleton  muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of mutant fish,mutant3,mutant3,Total RNA was isolated from the 15 dpf dpf bmpr2b mutant larval fishes using RNAiso Plus Reagent TaKaRa  China according to the manufacturers protocol. post RNA quality and quantity control  the transcriptome equencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina NEB  USA following manufacturers recommendations and index codes were added to attribute sequences to each sample.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP217299,,,m3_1.fq.gz m3_2.fq.gz,fastq fastq,8385335400.0,27951118.0,m3 1.fq.gz,0:150 1:150,A:2179183324;C:2013493686;G:2044351918;T:2148211353;N:95119,150,150,,,2179183324,2013493686,2044351918,2148211353,95119,SRX6651054,SRS5212730,SRA932406,"Huazhong Agricultural University|College of Fisheries, Key Lab of Freshwater Animal",Huazhong Agricultural University,2,0.94884,0.94904,0.0643,0.06403,0.66145,0.66316,0.46951,0.4767,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,China,2019-08-03,Larval,Larval,Muscle,Muscular System
53512,SRR9899212,SRX6651053,SRS5212730,SRP217299,PRJNA558506,Bmpr2b mutant zebrafish sequencing,PRJNA558506,Other,In order to explore the differential expression genes and related pathways caused by bmpr2b deletion in zebrafish. The comparative transcriptome analysis between wild and mutant samples was conducted.,,,,,zebrafish bmpr2b mutant,,strain:AB zebrafish|isolate:mutant|breed:zebrafish|cultivar:zebrafish|ecotype:Wuhan  China|age:15 days|dev stage:larval fish|sex:unknown|tissue:skeleton  muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of mutant fish,mutant2,mutant2,Total RNA was isolated from the 15 dpf dpf bmpr2b mutant larval fishes using RNAiso Plus Reagent TaKaRa  China according to the manufacturers protocol. post RNA quality and quantity control  the transcriptome equencing libraries were generated using NEBNext Ultra RNA Library Prep Kit for Illumina NEB  USA following manufacturers recommendations and index codes were added to attribute sequences to each sample.,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP217299,,,m2_1.fq.gz m2_2.fq.gz,fastq fastq,8728240500.0,29094135.0,m2 1.fq.gz,0:150 1:150,A:2262292258;C:2101600854;G:2129980194;T:2234266968;N:100226,150,150,,,2262292258,2101600854,2129980194,2234266968,100226,SRX6651053,SRS5212730,SRA932406,"Huazhong Agricultural University|College of Fisheries, Key Lab of Freshwater Animal",Huazhong Agricultural University,2,0.95297,0.95358,0.06449,0.06417,0.65965,0.65918,0.47932,0.4645,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,China,2019-08-03,Larval,Larval,Muscle,Muscular System
55379,SRR10323881,SRX7034716,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,10,10,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq control for lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,3356658750.0,22377725.0,RNA seq control for lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:875300673;C:782517555;G:796855605;T:901672776;N:312141,75,75,,,875300673,782517555,796855605,901672776,312141,SRX7034716,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.68437,0.73326,0.04743,0.05194,0.80241,0.80517,0.51875,0.52196,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55380,SRR10323882,SRX7034715,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,9,9,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz RNA_seq control for lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz,fastq fastq,3459242400.0,23061616.0,RNA seq control for lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:924400584;C:762078140;G:779330250;T:993109509;N:323917,75,75,,,924400584,762078140,779330250,993109509,323917,SRX7034715,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.67032,0.73764,0.07629,0.08303,0.80856,0.80748,0.52094,0.52695,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55381,SRR10323883,SRX7034714,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,8,8,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,3238312500.0,21588750.0,RNA seq mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:881635390;C:656958401;G:673596788;T:1025824968;N:296953,75,75,,,881635390,656958401,673596788,1025824968,296953,SRX7034714,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.59623,0.72377,0.07781,0.08944,0.80608,0.8016,0.53277,0.53095,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55382,SRR10323884,SRX7034713,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,7,7,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,3255021150.0,21700141.0,RNA seq mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:858912760;C:733048670;G:750496371;T:912263495;N:299854,75,75,,,858912760,733048670,750496371,912263495,299854,SRX7034713,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.65481,0.71883,0.05477,0.05995,0.7903,0.7921,0.51367,0.51188,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55383,SRR10323885,SRX7034712,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,6,6,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz RNA_seq control for mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz,fastq fastq,2413394850.0,16089299.0,RNA seq control for mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:660807483;C:490677840;G:505039519;T:756646234;N:223774,75,75,,,660807483,490677840,505039519,756646234,223774,SRX7034712,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.60009,0.72319,0.09185,0.10528,0.82175,0.81815,0.5234,0.51725,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55384,SRR10323886,SRX7034711,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,5,5,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq control for mda5 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,3124357200.0,20829048.0,RNA seq control for mda5 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:844721216;C:673572690;G:689308705;T:916479849;N:274740,75,75,,,844721216,673572690,689308705,916479849,274740,SRX7034711,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.66396,0.73861,0.09392,0.10351,0.80856,0.80797,0.53225,0.5369,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55385,SRR10323891,SRX7034706,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,4,4,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz RNA_seq rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz,fastq fastq,2812593000.0,18750620.0,RNA seq rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:759189725;C:611361876;G:625876145;T:815905469;N:259785,75,75,,,759189725,611361876,625876145,815905469,259785,SRX7034706,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.63609,0.70403,0.08285,0.0932,0.79847,0.79959,0.52487,0.52941,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55386,SRR10323898,SRX7034699,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  decitabine treatment in hemogenic endothelial cell 26hpf replicate 2,24,24,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz RNA_seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz,fastq fastq,5849571450.0,38997143.0,RNA seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:1574421853;C:1316832574;G:1315527058;T:1642305644;N:484321,75,75,,,1574421853,1316832574,1315527058,1642305644,484321,SRX7034699,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.78221,0.84034,0.0684,0.07089,0.76607,0.77025,0.50712,0.50772,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55387,SRR10323899,SRX7034698,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 1,23,23,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,5656815000.0,37712100.0,RNA seq decitabine treatment in hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:1487198866;C:1332723090;G:1275197163;T:1514410765;N:47285116,75,75,,,1487198866,1332723090,1275197163,1514410765,47285116,SRX7034698,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.86399,0.76012,0.0587,0.05779,0.76461,0.9105,0.49754,0.51037,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55388,SRR10323900,SRX7034697,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  VPA treatment in hemogenic endothelial cell 26hpf replicate 2,22,22,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq VPA treatment in hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz RNA_seq VPA treatment in hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz,fastq fastq,5978780250.0,39858535.0,RNA seq VPA treatment in hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:1580804547;C:1404640964;G:1399714637;T:1593586843;N:33259,75,75,,,1580804547,1404640964,1399714637,1593586843,33259,SRX7034697,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.92216,0.92477,0.04155,0.04126,0.74537,0.7512,0.48148,0.49049,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55389,SRR10323901,SRX7034696,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq VPA or decitabine treatment in hemogenic endothelial cell 26hpf replicate 1,21,21,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq VPA treatment in hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq VPA treatment in hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,8777730900.0,58518206.0,RNA seq VPA treatment in hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:2331650285;C:2053244561;G:2042022053;T:2350762388;N:51613,75,75,,,2331650285,2053244561,2042022053,2350762388,51613,SRX7034696,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.92143,0.92455,0.04604,0.04567,0.73361,0.73923,0.4802,0.48613,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55390,SRR10323902,SRX7034695,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,3,3,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,3613041150.0,24086941.0,RNA seq rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:972417798;C:795483066;G:808300399;T:1036510724;N:329163,75,75,,,972417798,795483066,808300399,1036510724,329163,SRX7034695,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.66853,0.7231,0.08329,0.0907,0.78953,0.79131,0.51481,0.52637,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55391,SRR10323903,SRX7034694,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for VPA or decitabine treatment in hemogenic endothelial cell 26hpf replicate 2,20,20,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for VPA_or_decitabine treatment in hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq control for VPA_or_decitabine treatment in hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,7211828100.0,48078854.0,RNA seq control for VPA or decitabine treatment in hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:1904350731;C:1693709371;G:1687946675;T:1925778331;N:42992,75,75,,,1904350731,1693709371,1687946675,1925778331,42992,SRX7034694,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.91819,0.92224,0.03958,0.03841,0.75584,0.76161,0.46923,0.46415,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55392,SRR10323904,SRX7034693,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for VPA treatment in hemogenic endothelial cell 26hpf replicate 1,19,19,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for VPA_or_decitabine treatment in hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq control for VPA_or_decitabine treatment in hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,8021297850.0,53475319.0,RNA seq control for VPA or decitabine treatment in hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:2121666298;C:1880005094;G:1872358379;T:2147221627;N:46452,75,75,,,2121666298,1880005094,1872358379,2147221627,46452,SRX7034693,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.91273,0.91897,0.0437,0.04345,0.75485,0.76037,0.46259,0.47199,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55393,SRR10323905,SRX7034692,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq mda5 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,18,18,TruSeq stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq mda5_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq mda5_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,4925792850.0,32838619.0,RNA seq mda5 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:1327496924;C:1143172265;G:1121827107;T:1332765205;N:531349,75,75,,,1327496924,1143172265,1121827107,1332765205,531349,SRX7034692,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.9235,0.923,0.07189,0.07157,0.74576,0.7486,0.46424,0.46997,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55394,SRR10323906,SRX7034691,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  mda5 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,17,17,TruSeq stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq mda5_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq mda5_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,4481194200.0,29874628.0,RNA seq mda5 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:1207561849;C:1040055195;G:1022613796;T:1210492037;N:471323,75,75,,,1207561849,1040055195,1022613796,1210492037,471323,SRX7034691,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.92094,0.92157,0.07292,0.07281,0.74704,0.75067,0.47205,0.47416,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55395,SRR10323907,SRX7034690,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  rig 1 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,16,16,TruSeq stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq rig_1_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz RNA_seq rig_1_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz,fastq fastq,2071385250.0,13809235.0,RNA seq rig 1 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:497024628;C:535934066;G:538798491;T:499539772;N:88293,75,75,,,497024628,535934066,538798491,499539772,88293,SRX7034690,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.92507,0.92563,0.0745,0.07106,0.74148,0.74186,0.5137,0.52923,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55396,SRR10323908,SRX7034689,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  rig 1 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,15,15,TruSeq stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq rig_1_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq rig_1_lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,1708336800.0,11388912.0,RNA seq rig 1 lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:413739883;C:438115098;G:440441368;T:415968029;N:72422,75,75,,,413739883,438115098,440441368,415968029,72422,SRX7034689,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.92948,0.93123,0.08112,0.07757,0.7472,0.74921,0.49384,0.502,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55397,SRR10323909,SRX7034688,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for double morphants endothelial hemogenic endothelial cell 26hpf replicate 2,14,14,TruSeq stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for double morphants endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq control for double morphants endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,2742841800.0,18285612.0,RNA seq control for double morphants endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:771268784;C:600759252;G:605972112;T:764554978;N:286674,75,75,,,771268784,600759252,605972112,764554978,286674,SRX7034688,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.91195,0.91276,0.15552,0.15531,0.7191,0.7247,0.487,0.47379,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55398,SRR10323910,SRX7034687,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for double morphants endothelial hemogenic endothelial cell 26hpf replicate 1,13,13,TruSeq stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for double morphants endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq control for double morphants endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,1909021350.0,12726809.0,RNA seq control for double morphants endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:536542827;C:420010389;G:423642042;T:528630203;N:195889,75,75,,,536542827,420010389,423642042,528630203,195889,SRX7034687,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.91535,0.91534,0.11578,0.11457,0.73705,0.74373,0.47609,0.47115,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,trueseq,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55399,SRR10323911,SRX7034686,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,12,12,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,5135290500.0,34235270.0,RNA seq lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:1339180940;C:1202946694;G:1230552771;T:1362120185;N:489910,75,75,,,1339180940,1202946694,1230552771,1362120185,489910,SRX7034686,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.66031,0.70687,0.04575,0.04896,0.81075,0.81195,0.50951,0.47552,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55400,SRR10323912,SRX7034685,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq  lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,11,11,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq lgp2 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,3890046300.0,25933642.0,RNA seq lgp2 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:1020376762;C:903218301;G:916043426;T:1050047618;N:360193,75,75,,,1020376762,903218301,916043426,1050047618,360193,SRX7034685,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.70733,0.75223,0.05929,0.06271,0.80807,0.81071,0.48475,0.49323,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55401,SRR10323913,SRX7034684,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2,2,2,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R1.fastq.gz RNA_seq control for rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 2_R2.fastq.gz,fastq fastq,2547796350.0,16985309.0,RNA seq control for rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 2 R1.fastq.gz,0:75 1:75,A:686259539;C:560800822;G:567842650;T:732652800;N:240539,75,75,,,686259539,560800822,567842650,732652800,240539,SRX7034684,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.70188,0.75886,0.08072,0.08833,0.8034,0.80649,0.51507,0.5194,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
55402,SRR10323914,SRX7034683,SRS5554730,SRP226614,PRJNA578896,Repetitive elements engage Rig I and Mda5 in interplay with Lgp2 to enhance hematopoietic stem cell emergence,PRJNA578896,Other,In this study we examine the role of RIG I like receptors RLRs in hematopoietic stem and progenitor cell formation. We have performed extensive expression analysis and chromatin accessibility assays on endothelial and hemogenic endothelial cells in knockdown animals for all the RLR receptors. Additionally we did expression analysis on animals with knockdown of two receptors. Finally we examined the upregulation of repetitive elements in hemogenic endothelial cells post treatment with valproic acid VPA or decitabine.,,,,,danRer10 raw data,,strain:AB/tu|age:not applicable|sex:pooled male and female|tissue:endothelial and hemogenic endothelial|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq control for rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1,1,1,NEBNext Low Input RNA Library Prep Kit,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP226614,,,RNA_seq control for rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R1.fastq.gz RNA_seq control for rig_1 morpholino injected endothelial_hemogenic endothelial cell 26hpf replicate 1_R2.fastq.gz,fastq fastq,2438070600.0,16253804.0,RNA seq control for rig 1 morpholino injected endothelial hemogenic endothelial cell 26hpf replicate 1 R1.fastq.gz,0:75 1:75,A:654282012;C:534555119;G:543878428;T:705130425;N:224616,75,75,,,654282012,534555119,543878428,705130425,224616,SRX7034683,SRS5554730,SRA983011,"Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany|Department of Cellular and Molecular Immunology","Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany",2,0.69336,0.75626,0.09168,0.09896,0.80166,0.80253,0.51795,0.52538,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,nebnext,bulk,unknown,unknown,,Germany,2019-10-24,Pharyngula,Embryo,Endothelium,Cardiovascular System
75414,SRR24517729,SRX20302027,SRS17627883,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae kiss1kiss2DKO Replicate2,zebrafish AO149 01T0008,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:kiss1 and kiss2 double knockout|geo loc name:China: Suzhou|sample type:whole organism|Replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish kiss1kiss2DKO larvae 2,RNA Seq for zebrafish kiss1kiss2DKO larvae 2,RNA Seq   zebrafish kiss1kiss2DKO larvae 2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0008_good_1.fq.gz Unknown_AO149-01T0008_good_2.fq.gz,fastq fastq,6912158300.0,23173882.0,Unknown AO149 01T0008 good 1.fq.gz,0:149.14 1:149.14,A:1796529490;C:1649628994;G:1669079817;T:1796880198;N:39801,149,149,,,1796529490,1649628994,1669079817,1796880198,39801,SRX20302027,SRS17627883,SRA1636880,Soochow University|Medical College,Soochow University,2,0.95632,0.95592,0.06085,0.06019,0.66515,0.66563,0.47686,0.47575,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75415,SRR24517730,SRX20302026,SRS17627882,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae kiss1kiss2DKO Replicate1,zebrafish AO149 01T0007,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:kiss1 and kiss2 double knockout|geo loc name:China: Suzhou|sample type:whole organism|Replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish kiss1kiss2DKO larvae 1,RNA Seq  for zebrafish kiss1kiss2DKO larvae 1,RNA Seq   zebrafish kiss1kiss2DKO larvae 1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0007_good_1.fq.gz Unknown_AO149-01T0007_good_2.fq.gz,fastq fastq,8005311792.0,26909041.0,Unknown AO149 01T0007 good 1.fq.gz,0:148.75 1:148.75,A:2077441584;C:1913582326;G:1934120275;T:2080121870;N:45737,148,148,,,2077441584,1913582326,1934120275,2080121870,45737,SRX20302026,SRS17627882,SRA1636880,Soochow University|Medical College,Soochow University,2,0.9522,0.95194,0.06345,0.06296,0.65691,0.65744,0.48074,0.48185,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75416,SRR24517731,SRX20302025,SRS17627881,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae kiss2KO Replicate2,zebrafish AO149 01T0006,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:kiss2 knockout|geo loc name:China: Suzhou|sample type:whole organism|Replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish kiss2KO larvae 2,RNA Seq for zebrafish kiss2KO  larvae 2,RNA Seq  zebrafish kiss2KO  larvae 2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0006_good_1.fq.gz Unknown_AO149-01T0006_good_2.fq.gz,fastq fastq,7638089446.0,25894588.0,Unknown AO149 01T0006 good 1.fq.gz,0:147.48 1:147.48,A:2051138070;C:1759130157;G:1773591862;T:2054190526;N:38831,147,147,,,2051138070,1759130157,1773591862,2054190526,38831,SRX20302025,SRS17627881,SRA1636880,Soochow University|Medical College,Soochow University,2,0.94967,0.94887,0.08556,0.08576,0.64898,0.64954,0.47984,0.48067,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75417,SRR24517732,SRX20302024,SRS17627879,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae kiss2KO Replicate1,zebrafish AO149 01T0005,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:kiss2 knockout|geo loc name:China: Suzhou|sample type:whole organism|Replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish kiss2KO larvae 1,RNA Seq for  zebrafish  kiss2KO  larvae 1,RNA Seq   zebrafish  kiss2KO  larvae 1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0005_good_1.fq.gz Unknown_AO149-01T0005_good_2.fq.gz,fastq fastq,7054134954.0,23687508.0,Unknown AO149 01T0005 good 1.fq.gz,0:148.90 1:148.90,A:1848389593;C:1667928954;G:1687707295;T:1850068763;N:40349,148,148,,,1848389593,1667928954,1687707295,1850068763,40349,SRX20302024,SRS17627879,SRA1636880,Soochow University|Medical College,Soochow University,2,0.94976,0.95007,0.07472,0.07458,0.65299,0.65324,0.48045,0.47909,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75418,SRR24517733,SRX20302023,SRS17627880,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae kiss1KO Replicate2,zebrafish AO149 01T0004,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:kiss1 knockout|geo loc name:China: Suzhou|sample type:whole organism|Replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish kiss1KO larvae 2,RNA Seq for  zebrafish  kiss1KO  larvae 2,RNA Seq   zebrafish  kiss1KO  larvae 2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0004_good_1.fq.gz Unknown_AO149-01T0004_good_2.fq.gz,fastq fastq,5814495346.0,19499621.0,Unknown AO149 01T0004 good 1.fq.gz,0:149.09 1:149.09,A:1528388873;C:1369910846;G:1386794007;T:1529368087;N:33533,149,149,,,1528388873,1369910846,1386794007,1529368087,33533,SRX20302023,SRS17627880,SRA1636880,Soochow University|Medical College,Soochow University,2,0.94765,0.94711,0.07972,0.07979,0.65283,0.65397,0.48362,0.48203,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75419,SRR24517734,SRX20302022,SRS17627877,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae kiss1KO Replicate1,zebrafish AO149 01T0003,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:kiss1 knockout|geo loc name:China: Suzhou|sample type:whole organism|Replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish kiss1KO larvae 1,RNA Seq for  zebrafish kiss1KO larvae 1,RNA Seq   zebrafish kiss1KO larvae 1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0003_good_1.fq.gz Unknown_AO149-01T0003_good_2.fq.gz,fastq fastq,6174484352.0,20748774.0,Unknown AO149 01T0003 good 1.fq.gz,0:148.79 1:148.79,A:1629263285;C:1446858897;G:1467609266;T:1630717493;N:35411,148,148,,,1629263285,1446858897,1467609266,1630717493,35411,SRX20302022,SRS17627877,SRA1636880,Soochow University|Medical College,Soochow University,2,0.94831,0.94853,0.07898,0.07866,0.65295,0.65419,0.47605,0.47682,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75420,SRR24517735,SRX20302021,SRS17627878,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae wt Replicate2,zebrafish AO149 01T0002,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:WT|geo loc name:China: Suzhou|sample type:whole organism|Replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish WT larvae 2,RNA Seq  for zebrafish WT  larvae 2,RNA Seq   zebrafish WT  larvae 2,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0002_good_1.fq.gz Unknown_AO149-01T0002_good_2.fq.gz,fastq fastq,6059983436.0,20361363.0,Unknown AO149 01T0002 good 1.fq.gz,0:148.81 1:148.81,A:1608075382;C:1408291949;G:1433236990;T:1610344312;N:34803,148,148,,,1608075382,1408291949,1433236990,1610344312,34803,SRX20302021,SRS17627878,SRA1636880,Soochow University|Medical College,Soochow University,2,0.9529,0.95334,0.07296,0.07315,0.65435,0.65247,0.49743,0.47334,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures
75421,SRR24517736,SRX20302020,SRS17627876,SRP437283,PRJNA971676,zebrafish kiss genes knockouts deep sequencing,PRJNA971676,Other,Mammals possess only one Kisspeptin gene  but in teleost like zebrafish  there are two copies. While knockout of Kiss1 results in infertility in mammals  knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence.,,,,RNA seq of zebrafish:5dpf larvae wt Replicate1,zebrafish AO149 01T0001,,strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:WT|geo loc name:China: Suzhou|sample type:whole organism|Replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish: larvae,RNA Seq for zebrafish WT larvae 1,RNA Seq for zebrafish WT larvae 1,RNA Seq   zebrafish WT larvae 1,,,RNA-Seq,TRANSCRIPTOMIC,size fractionation,PAIRED,ILLUMINA,HiSeq X Five,,SRP437283,,,Unknown_AO149-01T0001_good_1.fq.gz Unknown_AO149-01T0001_good_2.fq.gz,fastq fastq,6809997812.0,22853255.0,Unknown AO149 01T0001 good 1.fq.gz,0:148.99 1:148.99,A:1813360438;C:1582845212;G:1601287701;T:1812465242;N:39219,148,148,,,1813360438,1582845212,1601287701,1812465242,39219,SRX20302020,SRS17627876,SRA1636880,Soochow University|Medical College,Soochow University,2,0.94825,0.94824,0.087,0.08724,0.64695,0.64715,0.49206,0.493,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,size_fractionation,unknown,bulk,unknown,unknown,,Unknown,2023-05-11,Larval,Larval,Whole Organism,All anatomical structures