rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
9419,ERR273825,ERX248101,ERS092357,ERP001559,PRJEB3118,Zebrafish transcript profiling,Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82,Transcriptome Analysis,Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling.   This includes pilot studies for transcript indexing within the sequence reads.,,,,,SAMEA1888984,SC,ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:14Z|ENA LAST UPDATE:2018 03 08T15:36:21Z|External Id:SAMEA1888984|INSDC center name:SC|INSDC first public:2013 05 13T11:13:14Z|INSDC last update:2018 03 08T15:36:21Z|INSDC status:public|Submitter Id:hu2117 mutant vs wild type sc 2012 02 06T13:11:11Z 1107268|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant hu2117 embryo samples and 3 matched sibling wild type samples. A 6 base indexing sequence is bases 5 to 10 of read 1 followed by polyT.|sample name:hu2117 mutant vs wild type sc 2012 02 06T13:11:11Z 1107268|scientific name:Danio rerio,,,,,,,,,1,SC EXP 6316 8,2387558,Illumina sequencing of library 2387558  constructed from sample accession ERS092357 for study accession ERP001559.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001559,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16,6316_8.bam,bam,12715227300.0,84768182.0,SC RUN 6316 8,0:75 1:75,A:3986328155;C:1983554902;G:2466211000;T:4277430579;N:1702664,75,75,,,3986328155,1983554902,2466211000,4277430579,1702664,ERX248101,ERS092357,ERA212579,SC,Wellcome Sanger Institute,2,0.06657,0.60346,0.04569,0.19203,0.9767,0.82014,0.52373,0.4048,75,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-05-13,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
9420,ERR273824,ERX248100,ERS092356,ERP001559,PRJEB3118,Zebrafish transcript profiling,Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82,Transcriptome Analysis,Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling.   This includes pilot studies for transcript indexing within the sequence reads.,,,,,SAMEA1889000,SC,ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T15:36:25Z|External Id:SAMEA1889000|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T15:36:25Z|INSDC status:public|Submitter Id:e48 mutant vs wild type sc 2012 02 06T13:11:09Z 1107267|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant e48 embryo samples and 3 matched sibling wild type samples. A 6 base indexing sequence is bases 5 to 10 of read 1 followed by polyT.|sample name:e48 mutant vs wild type sc 2012 02 06T13:11:09Z 1107267|scientific name:Danio rerio,,,,,,,,,1,SC EXP 6316 7,2387557,Illumina sequencing of library 2387557  constructed from sample accession ERS092356 for study accession ERP001559.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001559,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16,6316_7.bam,bam,17475932100.0,116506214.0,SC RUN 6316 7,0:75 1:75,A:5548228936;C:2693024343;G:3365940794;T:5867204994;N:1533033,75,75,,,5548228936,2693024343,3365940794,5867204994,1533033,ERX248100,ERS092356,ERA212579,SC,Wellcome Sanger Institute,2,0.05939,0.59457,0.04089,0.19671,0.98068,0.838,0.46304,0.62741,75,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-05-13,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
9421,ERR273823,ERX248099,ERS092354,ERP001559,PRJEB3118,Zebrafish transcript profiling,Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82,Transcriptome Analysis,Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling.   This includes pilot studies for transcript indexing within the sequence reads.,,,,,SAMEA1889008,SC,ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T15:36:21Z|External Id:SAMEA1889008|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T15:36:21Z|INSDC status:public|Submitter Id:hu3332 mutant vs wild type sc 2012 02 06T13:11:07Z 1107265|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant hu3332 embryo samples and 3 matched sibling wild type samples. A 6 base indexing sequence is bases 5 to 10 of read 1 followed by polyT.|sample name:hu3332 mutant vs wild type sc 2012 02 06T13:11:07Z 1107265|scientific name:Danio rerio,,,,,,,,,1,SC EXP 6316 5,2387555,Illumina sequencing of library 2387555  constructed from sample accession ERS092354 for study accession ERP001559.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001559,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16,6316_5.bam,bam,13995917850.0,93306119.0,SC RUN 6316 5,0:75 1:75,A:4367273029;C:2176748810;G:2714026832;T:4736121060;N:1748119,75,75,,,4367273029,2176748810,2714026832,4736121060,1748119,ERX248099,ERS092354,ERA212579,SC,Wellcome Sanger Institute,2,0.06401,0.62019,0.04224,0.18728,0.97723,0.81071,0.461,0.55379,75,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-05-13,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
9422,ERR273822,ERX248098,ERS092063,ERP001559,PRJEB3118,Zebrafish transcript profiling,Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82,Transcriptome Analysis,Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling.   This includes pilot studies for transcript indexing within the sequence reads.,,,,,SAMEA1888996,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T15:36:13Z|External Id:SAMEA1888996|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T15:36:13Z|INSDC status:public|Submitter Id:sa0058 mutant vs wild type sc 2012 02 06T13:05:07Z 265521|common name:zebrafish|sample description:33 prime end enriched mRNA from 3 morphological mutant sa0058 embryo samples and 3 matched sibling wild type samples. A 6 base indexing sequence is bases 5 to 10 of read 1 followed by polyT.|sample name:sa0058 mutant vs wild type sc 2012 02 06T13:05:07Z 265521|scientific name:Danio rerio,,,,,,,,,1,SC EXP 5287 7,449230,Illumina sequencing of library 449230  constructed from sample accession ERS092063 for study accession ERP001559.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP001559,Illumina Genome Analyzer II paired end sequencing,ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16,5287_7.bam,bam,2216402460.0,20522245.0,SC RUN 5287 7,0:54 1:54,A:646882787;C:346392353;G:394060191;T:827745173;N:1321956,54,54,,,646882787,346392353,394060191,827745173,1321956,ERX248098,ERS092063,ERA212579,SC,Wellcome Sanger Institute,2,0.02565,0.72009,0.01691,0.21429,0.98725,0.78944,0.62084,0.61278,54,54,T,B,mate1 technical by mapping diff,illumina,early_illumina,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2013-05-13,Undetermined,Embryo,Embryo Imprecise,All anatomical structures
11245,ERR10851251,ERX10296231,ERS14601258,ERP144652,PRJEB59599,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E-MTAB-12577,Transcriptome Analysis,Comparison between wildtype and Gata2b heterozygous zebrafish HSPCs,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,,Protocols: Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,WT3 cd41pflt1p48hpf,SAMEA112483908,Department of Hematology cancer institute ErasmusMC,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17|External Id:SAMEA112483908|INSDC center alias:Department of Hematology cancer institute ErasmusMC|INSDC center name:Department of Hematology cancer institute ErasmusMC|INSDC first public:2023 02 17T00:21:53Z|INSDC last update:2023 02 17T00:21:53Z|INSDC status:public|Submitter Id:E MTAB 12577:WT3 cd41pflt1p48hpf|age:48|broker name:ArrayExpress|cell type:hematopoietic stem cell|common name:zebrafish|developmental stage:embryo|genotype:wild type genotype|immunophenotype:CD41:GFP+ Flt1:RFP+|individual:pools of 3 embryos 1|organism part:liver|sample name:E MTAB 12577:WT3 cd41pflt1p48hpf|scientific name:Danio rerio|strain:TgCD41:GFP TgFlt1:RFP WT,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E MTAB 12577:WT3 cd41pflt1p48hpf p,WT3 cd41pflt1p48hpf p,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Experimental Factor: genotype:wild type genotype,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP144652,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,WT3_cd41pflt1p48hpf_R1.fastq.gz WT3_cd41pflt1p48hpf_R2.fastq.gz,fastq fastq,2865896816.0,14187608.0,E MTAB 12577:WT3 cd41pflt1p48hpf R,0:101 1:101,A:766433553;C:631932872;G:660672891;T:806849737;N:7763,101,101,,,766433553,631932872,660672891,806849737,7763,ERX10296231,ERS14601258,ERA20429817,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,2,0.90501,0.85042,0.09405,0.09335,0.87286,0.87943,0.48423,0.47904,101,101,B,B,biological fallback assumption,illumina,novaseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Netherlands,2023-02-17,Hatching,Embryo,Embryo Imprecise,All anatomical structures
11246,ERR10851250,ERX10296230,ERS14601257,ERP144652,PRJEB59599,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E-MTAB-12577,Transcriptome Analysis,Comparison between wildtype and Gata2b heterozygous zebrafish HSPCs,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,,Protocols: Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,WT2 cd41pflt1p48hpf,SAMEA112483907,Department of Hematology cancer institute ErasmusMC,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17|External Id:SAMEA112483907|INSDC center alias:Department of Hematology cancer institute ErasmusMC|INSDC center name:Department of Hematology cancer institute ErasmusMC|INSDC first public:2023 02 17T00:21:53Z|INSDC last update:2023 02 17T00:21:53Z|INSDC status:public|Submitter Id:E MTAB 12577:WT2 cd41pflt1p48hpf|age:48|broker name:ArrayExpress|cell type:hematopoietic stem cell|common name:zebrafish|developmental stage:embryo|genotype:wild type genotype|immunophenotype:CD41:GFP+ Flt1:RFP+|individual:pools of 3 embryos 5|organism part:liver|sample name:E MTAB 12577:WT2 cd41pflt1p48hpf|scientific name:Danio rerio|strain:TgCD41:GFP TgFlt1:RFP WT,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E MTAB 12577:WT2 cd41pflt1p48hpf p,WT2 cd41pflt1p48hpf p,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Experimental Factor: genotype:wild type genotype,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP144652,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,WT2_cd41pflt1p48hpf_R1.fastq.gz WT2_cd41pflt1p48hpf_R2.fastq.gz,fastq fastq,2929743360.0,14503680.0,E MTAB 12577:WT2 cd41pflt1p48hpf R,0:101 1:101,A:803775344;C:639485652;G:661899077;T:824575679;N:7608,101,101,,,803775344,639485652,661899077,824575679,7608,ERX10296230,ERS14601257,ERA20429817,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,2,0.94558,0.90768,0.09379,0.09399,0.79058,0.79833,0.48216,0.47743,101,101,B,B,biological fallback assumption,illumina,novaseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Netherlands,2023-02-17,Hatching,Embryo,Embryo Imprecise,All anatomical structures
11247,ERR10851249,ERX10296229,ERS14601256,ERP144652,PRJEB59599,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E-MTAB-12577,Transcriptome Analysis,Comparison between wildtype and Gata2b heterozygous zebrafish HSPCs,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,,Protocols: Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,WT1 cd41pflt1p48hpf,SAMEA112483906,Department of Hematology cancer institute ErasmusMC,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17|External Id:SAMEA112483906|INSDC center alias:Department of Hematology cancer institute ErasmusMC|INSDC center name:Department of Hematology cancer institute ErasmusMC|INSDC first public:2023 02 17T00:21:53Z|INSDC last update:2023 02 17T00:21:53Z|INSDC status:public|Submitter Id:E MTAB 12577:WT1 cd41pflt1p48hpf|age:48|broker name:ArrayExpress|cell type:hematopoietic stem cell|common name:zebrafish|developmental stage:embryo|genotype:wild type genotype|immunophenotype:CD41:GFP+ Flt1:RFP+|individual:pools of 3 embryos 4|organism part:liver|sample name:E MTAB 12577:WT1 cd41pflt1p48hpf|scientific name:Danio rerio|strain:TgCD41:GFP TgFlt1:RFP WT,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E MTAB 12577:WT1 cd41pflt1p48hpf p,WT1 cd41pflt1p48hpf p,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Experimental Factor: genotype:wild type genotype,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP144652,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,WT1_cd41pflt1p48hpf_R1.fastq.gz WT1_cd41pflt1p48hpf_R2.fastq.gz,fastq fastq,3248647426.0,16082413.0,E MTAB 12577:WT1 cd41pflt1p48hpf R,0:101 1:101,A:883030193;C:725566673;G:750551574;T:889489774;N:9212,101,101,,,883030193,725566673,750551574,889489774,9212,ERX10296229,ERS14601256,ERA20429817,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,2,0.91568,0.8915,0.09819,0.09602,0.86634,0.8706,0.48887,0.48731,101,101,B,B,biological fallback assumption,illumina,novaseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Netherlands,2023-02-17,Hatching,Embryo,Embryo Imprecise,All anatomical structures
11248,ERR10851248,ERX10296228,ERS14601255,ERP144652,PRJEB59599,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E-MTAB-12577,Transcriptome Analysis,Comparison between wildtype and Gata2b heterozygous zebrafish HSPCs,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,,Protocols: Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Het3 cd41pflt1p48hpf,SAMEA112483905,Department of Hematology cancer institute ErasmusMC,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17|External Id:SAMEA112483905|INSDC center alias:Department of Hematology cancer institute ErasmusMC|INSDC center name:Department of Hematology cancer institute ErasmusMC|INSDC first public:2023 02 17T00:21:53Z|INSDC last update:2023 02 17T00:21:53Z|INSDC status:public|Submitter Id:E MTAB 12577:Het3 cd41pflt1p48hpf|age:48|broker name:ArrayExpress|cell type:hematopoietic stem cell|common name:zebrafish|developmental stage:embryo|genotype:Gata2b +/ |immunophenotype:CD41:GFP+ Flt1:RFP+|individual:pools of 3 embryos 3|organism part:liver|sample name:E MTAB 12577:Het3 cd41pflt1p48hpf|scientific name:Danio rerio|strain:TgCD41:GFP TgFlt1:RFP Gata2b KO,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E MTAB 12577:Het3 cd41pflt1p48hpf p,Het3 cd41pflt1p48hpf p,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Experimental Factor: genotype:Gata2b +/ ,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP144652,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,Het3_cd41pflt1p48hpf_R1.fastq.gz Het3_cd41pflt1p48hpf_R2.fastq.gz,fastq fastq,2826011512.0,13990156.0,E MTAB 12577:Het3 cd41pflt1p48hpf R,0:101 1:101,A:777245323;C:622387331;G:640520737;T:785850577;N:7544,101,101,,,777245323,622387331,640520737,785850577,7544,ERX10296228,ERS14601255,ERA20429817,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,2,0.92716,0.90121,0.10896,0.10895,0.76739,0.77628,0.47007,0.46569,101,101,B,B,biological fallback assumption,illumina,novaseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Netherlands,2023-02-17,Hatching,Embryo,Embryo Imprecise,All anatomical structures
11249,ERR10851247,ERX10296227,ERS14601254,ERP144652,PRJEB59599,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E-MTAB-12577,Transcriptome Analysis,Comparison between wildtype and Gata2b heterozygous zebrafish HSPCs,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,,Protocols: Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Het2 cd41pflt1p48hpf,SAMEA112483904,Department of Hematology cancer institute ErasmusMC,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17|External Id:SAMEA112483904|INSDC center alias:Department of Hematology cancer institute ErasmusMC|INSDC center name:Department of Hematology cancer institute ErasmusMC|INSDC first public:2023 02 17T00:21:53Z|INSDC last update:2023 02 17T00:21:53Z|INSDC status:public|Submitter Id:E MTAB 12577:Het2 cd41pflt1p48hpf|age:48|broker name:ArrayExpress|cell type:hematopoietic stem cell|common name:zebrafish|developmental stage:embryo|genotype:Gata2b +/ |immunophenotype:CD41:GFP+ Flt1:RFP+|individual:pools of 3 embryos 2|organism part:liver|sample name:E MTAB 12577:Het2 cd41pflt1p48hpf|scientific name:Danio rerio|strain:TgCD41:GFP TgFlt1:RFP Gata2b KO,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E MTAB 12577:Het2 cd41pflt1p48hpf p,Het2 cd41pflt1p48hpf p,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Experimental Factor: genotype:Gata2b +/ ,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP144652,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,Het2_cd41pflt1p48hpf_R1.fastq.gz Het2_cd41pflt1p48hpf_R2.fastq.gz,fastq fastq,2999149954.0,14847277.0,E MTAB 12577:Het2 cd41pflt1p48hpf R,0:101 1:101,A:822247269;C:656610849;G:681974696;T:838308917;N:8223,101,101,,,822247269,656610849,681974696,838308917,8223,ERX10296227,ERS14601254,ERA20429817,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,2,0.94678,0.91473,0.10277,0.10053,0.76686,0.77684,0.46042,0.47202,101,101,B,B,biological fallback assumption,illumina,novaseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Netherlands,2023-02-17,Hatching,Embryo,Embryo Imprecise,All anatomical structures
11250,ERR10851246,ERX10296226,ERS14601253,ERP144652,PRJEB59599,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E-MTAB-12577,Transcriptome Analysis,Comparison between wildtype and Gata2b heterozygous zebrafish HSPCs,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,,Protocols: Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Het1 cd41pflt1p48hpf,SAMEA112483903,Department of Hematology cancer institute ErasmusMC,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17|External Id:SAMEA112483903|INSDC center alias:Department of Hematology cancer institute ErasmusMC|INSDC center name:Department of Hematology cancer institute ErasmusMC|INSDC first public:2023 02 17T00:21:53Z|INSDC last update:2023 02 17T00:21:53Z|INSDC status:public|Submitter Id:E MTAB 12577:Het1 cd41pflt1p48hpf|age:48|broker name:ArrayExpress|cell type:hematopoietic stem cell|common name:zebrafish|developmental stage:embryo|genotype:Gata2b +/ |immunophenotype:CD41:GFP+ Flt1:RFP+|individual:pools of 3 embryos 1|organism part:liver|sample name:E MTAB 12577:Het1 cd41pflt1p48hpf|scientific name:Danio rerio|strain:TgCD41:GFP TgFlt1:RFP Gata2b KO,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,E MTAB 12577:Het1 cd41pflt1p48hpf p,Het1 cd41pflt1p48hpf p,Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,Embryos were dissociated using Collagenase 1  2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified,Experimental Factor: genotype:Gata2b +/ ,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP144652,Illumina NovaSeq 6000 paired end sequencing; Heterozygous Gata2b versus wildtype Gata2b zebrafish embryo HSPC CD41,ENA FIRST PUBLIC:2023 02 17|ENA LAST UPDATE:2023 02 17,Het1_cd41pflt1p48hpf_R1.fastq.gz Het1_cd41pflt1p48hpf_R2.fastq.gz,fastq fastq,36682350994.0,181595797.0,E MTAB 12577:Het1 cd41pflt1p48hpf R,0:101 1:101,A:10130106739;C:7969045717;G:8373740062;T:10209360741;N:97735,101,101,,,10130106739,7969045717,8373740062,10209360741,97735,ERX10296226,ERS14601253,ERA20429817,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,Department of Hematology cancer institute ErasmusMC|European Nucleotide Archive,2,0.94302,0.91104,0.11873,0.11597,0.7554,0.76579,0.48813,0.47764,101,101,B,B,biological fallback assumption,illumina,novaseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Netherlands,2023-02-17,Hatching,Embryo,Embryo Imprecise,All anatomical structures
16526,ERR667398,ERX622886,ERS463339,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548493,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548493|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 4 sc 1972462|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCAGGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 4 sc 1972462|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#36,10517312,Illumina sequencing of library 10517312  constructed from sample accession ERS463339 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCAGGAGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#36.cram,cram,170828190.0,1314063.0,SC RUN 13256 1#36,0:55 1:75,A:44768263;C:34386047;G:35500778;T:56156162;N:16940,55,75,,,44768263,34386047,35500778,56156162,16940,ERX622886,ERS463339,ERA375333,SC,Wellcome Sanger Institute,2,0.13166,0.8204,0.06755,0.19006,0.95753,0.81655,0.76236,0.68533,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16527,ERR667397,ERX622885,ERS463338,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548492,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548492|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 3 sc 1972461|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCTCACGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 3 sc 1972461|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#35,10517311,Illumina sequencing of library 10517311  constructed from sample accession ERS463338 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCTCACGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#35.cram,cram,261820650.0,2014005.0,SC RUN 13256 1#35,0:55 1:75,A:72670470;C:50112031;G:54263310;T:84750983;N:23856,55,75,,,72670470,50112031,54263310,84750983,23856,ERX622885,ERS463338,ERA375333,SC,Wellcome Sanger Institute,2,0.17465,0.75166,0.11391,0.1792,0.95937,0.84238,0.73795,0.70275,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16528,ERR667396,ERX622884,ERS463337,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548491,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548491|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 2 sc 1972460|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TACTTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 2 sc 1972460|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#34,10517310,Illumina sequencing of library 10517310  constructed from sample accession ERS463337 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TACTTCGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#34.cram,cram,291378100.0,2241370.0,SC RUN 13256 1#34,0:55 1:75,A:80660045;C:56367784;G:60328044;T:93993547;N:28680,55,75,,,80660045,56367784,60328044,93993547,28680,ERX622884,ERS463337,ERA375333,SC,Wellcome Sanger Institute,2,0.16274,0.76681,0.10005,0.16164,0.95994,0.84228,0.77601,0.72125,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16529,ERR667395,ERX622883,ERS463336,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548490,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548490|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 12 sc 1972459|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TGAACTGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 12 sc 1972459|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#33,10517309,Illumina sequencing of library 10517309  constructed from sample accession ERS463336 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGAACTGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#33.cram,cram,159495050.0,1226885.0,SC RUN 13256 1#33,0:55 1:75,A:44526945;C:31107840;G:32400438;T:51444629;N:15198,55,75,,,44526945,31107840,32400438,51444629,15198,ERX622883,ERS463336,ERA375333,SC,Wellcome Sanger Institute,2,0.14405,0.72387,0.09685,0.16934,0.96585,0.84476,0.75451,0.71348,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16530,ERR667394,ERX622882,ERS463335,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548489,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548489|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 11 sc 1972458|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TTGGTATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 11 sc 1972458|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#32,10517308,Illumina sequencing of library 10517308  constructed from sample accession ERS463335 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTGGTATG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#32.cram,cram,230733620.0,1774874.0,SC RUN 13256 1#32,0:55 1:75,A:65923552;C:43534910;G:44813128;T:76440148;N:21882,55,75,,,65923552,43534910,44813128,76440148,21882,ERX622882,ERS463335,ERA375333,SC,Wellcome Sanger Institute,2,0.16493,0.71702,0.10319,0.16046,0.96035,0.83364,0.7605,0.69357,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16531,ERR667393,ERX622881,ERS463334,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548488,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548488|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 10 sc 1972457|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TAACGCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 10 sc 1972457|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#31,10517307,Illumina sequencing of library 10517307  constructed from sample accession ERS463334 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TAACGCTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#31.cram,cram,169693940.0,1305338.0,SC RUN 13256 1#31,0:55 1:75,A:47216999;C:32233282;G:34303404;T:55924495;N:15760,55,75,,,47216999,32233282,34303404,55924495,15760,ERX622881,ERS463334,ERA375333,SC,Wellcome Sanger Institute,2,0.15711,0.76441,0.09573,0.15362,0.96185,0.83625,0.78358,0.43248,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16532,ERR667392,ERX622880,ERS463333,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548487,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548487|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 9 sc 1972456|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TCGAAGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 9 sc 1972456|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#30,10517306,Illumina sequencing of library 10517306  constructed from sample accession ERS463333 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCGAAGTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#30.cram,cram,246126400.0,1893280.0,SC RUN 13256 1#30,0:55 1:75,A:64877434;C:48807745;G:51055789;T:81362490;N:22942,55,75,,,64877434,48807745,51055789,81362490,22942,ERX622880,ERS463333,ERA375333,SC,Wellcome Sanger Institute,2,0.13616,0.81131,0.0854,0.19973,0.96556,0.82757,0.74775,0.70258,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16533,ERR667391,ERX622879,ERS463332,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548486,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548486|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 8 sc 1972455|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TTCCATTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 8 sc 1972455|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#29,10517305,Illumina sequencing of library 10517305  constructed from sample accession ERS463332 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTCCATTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#29.cram,cram,237043690.0,1823413.0,SC RUN 13256 1#29,0:55 1:75,A:68761865;C:43795810;G:47113828;T:77348945;N:23242,55,75,,,68761865,43795810,47113828,77348945,23242,ERX622879,ERS463332,ERA375333,SC,Wellcome Sanger Institute,2,0.13798,0.71442,0.08126,0.13596,0.95712,0.83751,0.72277,0.7226,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16534,ERR667390,ERX622878,ERS463331,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548485,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548485|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 7 sc 1972454|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TAGTCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 7 sc 1972454|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#28,10517304,Illumina sequencing of library 10517304  constructed from sample accession ERS463331 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TAGTCTTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#28.cram,cram,394343300.0,3033410.0,SC RUN 13256 1#28,0:55 1:75,A:111651222;C:75521035;G:80020655;T:127113022;N:37366,55,75,,,111651222,75521035,80020655,127113022,37366,ERX622878,ERS463331,ERA375333,SC,Wellcome Sanger Institute,2,0.13408,0.74717,0.07471,0.14051,0.95958,0.83467,0.75125,0.70647,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16535,ERR667389,ERX622877,ERS463330,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548484,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548484|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 6 sc 1972453|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TGTGGTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 6 sc 1972453|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#27,10517303,Illumina sequencing of library 10517303  constructed from sample accession ERS463330 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGTGGTTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#27.cram,cram,284205350.0,2186195.0,SC RUN 13256 1#27,0:55 1:75,A:81760893;C:54722204;G:55386801;T:92306336;N:29116,55,75,,,81760893,54722204,55386801,92306336,29116,ERX622877,ERS463330,ERA375333,SC,Wellcome Sanger Institute,2,0.15161,0.71556,0.08596,0.14319,0.95868,0.8392,0.77754,0.71796,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16536,ERR667388,ERX622876,ERS463329,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548483,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548483|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 5 sc 1972452|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TCCTCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 5 sc 1972452|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#26,10517302,Illumina sequencing of library 10517302  constructed from sample accession ERS463329 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCCTCAAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#26.cram,cram,330810350.0,2544695.0,SC RUN 13256 1#26,0:55 1:75,A:93408226;C:61812207;G:69176898;T:106383919;N:29100,55,75,,,93408226,61812207,69176898,106383919,29100,ERX622876,ERS463329,ERA375333,SC,Wellcome Sanger Institute,2,0.13377,0.69577,0.07532,0.14875,0.95781,0.8383,0.72303,0.71175,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16537,ERR667387,ERX622875,ERS463328,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548482,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:16Z|External Id:SAMEA2548482|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:16Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 4 sc 1972451|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TACAGGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 4 sc 1972451|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#25,10517301,Illumina sequencing of library 10517301  constructed from sample accession ERS463328 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TACAGGAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#25.cram,cram,474507020.0,3650054.0,SC RUN 13256 1#25,0:55 1:75,A:131496123;C:90613341;G:97290951;T:155059153;N:47452,55,75,,,131496123,90613341,97290951,155059153,47452,ERX622875,ERS463328,ERA375333,SC,Wellcome Sanger Institute,2,0.13262,0.73888,0.07276,0.15006,0.96451,0.83479,0.78366,0.72049,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16550,ERR667386,ERX622874,ERS463327,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548481,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548481|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 3 sc 1972450|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TAGTGACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 3 sc 1972450|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#24,10517300,Illumina sequencing of library 10517300  constructed from sample accession ERS463327 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TAGTGACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#24.cram,cram,296075650.0,2277505.0,SC RUN 13256 1#24,0:55 1:75,A:82935889;C:56062979;G:59762388;T:97286073;N:28321,55,75,,,82935889,56062979,59762388,97286073,28321,ERX622874,ERS463327,ERA375333,SC,Wellcome Sanger Institute,2,0.1437,0.74103,0.08347,0.14393,0.96325,0.83684,0.81783,0.70771,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16551,ERR667385,ERX622873,ERS463326,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548480,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548480|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 2 sc 1972449|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TTCCTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 2 sc 1972449|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#23,10517299,Illumina sequencing of library 10517299  constructed from sample accession ERS463326 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTCCTGCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#23.cram,cram,443750710.0,3413467.0,SC RUN 13256 1#23,0:55 1:75,A:124952195;C:85586617;G:94833109;T:138341796;N:36993,55,75,,,124952195,85586617,94833109,138341796,36993,ERX622873,ERS463326,ERA375333,SC,Wellcome Sanger Institute,2,0.15245,0.72135,0.07368,0.15151,0.95568,0.84449,0.77081,0.72424,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16552,ERR667384,ERX622872,ERS463325,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548479,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:16Z|External Id:SAMEA2548479|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:16Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 1 sc 1972448|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TGCGATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 1 sc 1972448|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#22,10517298,Illumina sequencing of library 10517298  constructed from sample accession ERS463325 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGCGATCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#22.cram,cram,298785370.0,2298349.0,SC RUN 13256 1#22,0:55 1:75,A:82163853;C:59663280;G:63342361;T:93589112;N:26764,55,75,,,82163853,59663280,63342361,93589112,26764,ERX622872,ERS463325,ERA375333,SC,Wellcome Sanger Institute,2,0.13397,0.72614,0.07209,0.16108,0.96303,0.85188,0.78255,0.73973,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16553,ERR667383,ERX622871,ERS463324,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548478,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548478|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 12 sc 1972447|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TTGACTCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 12 sc 1972447|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#21,10517297,Illumina sequencing of library 10517297  constructed from sample accession ERS463324 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTGACTCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#21.cram,cram,140774920.0,1082884.0,SC RUN 13256 1#21,0:55 1:75,A:39481115;C:27348433;G:30029240;T:43903005;N:13127,55,75,,,39481115,27348433,30029240,43903005,13127,ERX622871,ERS463324,ERA375333,SC,Wellcome Sanger Institute,2,0.14879,0.72247,0.08143,0.15522,0.96118,0.84867,0.78965,0.74254,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16554,ERR667382,ERX622870,ERS463323,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548477,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548477|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 11 sc 1972446|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TGCATAGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 11 sc 1972446|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#20,10517296,Illumina sequencing of library 10517296  constructed from sample accession ERS463323 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGCATAGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#20.cram,cram,178794590.0,1375343.0,SC RUN 13256 1#20,0:55 1:75,A:50890564;C:34618169;G:37008888;T:56258907;N:18062,55,75,,,50890564,34618169,37008888,56258907,18062,ERX622870,ERS463323,ERA375333,SC,Wellcome Sanger Institute,2,0.15828,0.68013,0.10522,0.16411,0.96301,0.85147,0.77788,0.71946,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16555,ERR667381,ERX622869,ERS463322,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548476,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:16Z|External Id:SAMEA2548476|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:16Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 10 sc 1972445|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TGATACGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 10 sc 1972445|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#19,10517295,Illumina sequencing of library 10517295  constructed from sample accession ERS463322 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGATACGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#19.cram,cram,152796020.0,1175354.0,SC RUN 13256 1#19,0:55 1:75,A:43164178;C:28497500;G:30636978;T:50482443;N:14921,55,75,,,43164178,28497500,30636978,50482443,14921,ERX622869,ERS463322,ERA375333,SC,Wellcome Sanger Institute,2,0.17338,0.74214,0.11412,0.17188,0.95954,0.83475,0.77599,0.69646,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16556,ERR667380,ERX622868,ERS463321,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548475,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548475|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 9 sc 1972444|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TCGAGCGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 9 sc 1972444|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#18,10517294,Illumina sequencing of library 10517294  constructed from sample accession ERS463321 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCGAGCGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#18.cram,cram,246614290.0,1897033.0,SC RUN 13256 1#18,0:55 1:75,A:65847226;C:48649826;G:51891861;T:80201978;N:23399,55,75,,,65847226,48649826,51891861,80201978,23399,ERX622868,ERS463321,ERA375333,SC,Wellcome Sanger Institute,2,0.12616,0.80609,0.07386,0.19379,0.96566,0.82942,0.80786,0.70582,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16557,ERR667379,ERX622867,ERS463320,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548474,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548474|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 8 sc 1972443|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TTGGAGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 8 sc 1972443|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#17,10517293,Illumina sequencing of library 10517293  constructed from sample accession ERS463320 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTGGAGGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#17.cram,cram,192037820.0,1477214.0,SC RUN 13256 1#17,0:55 1:75,A:52262399;C:38034317;G:39394465;T:62328424;N:18215,55,75,,,52262399,38034317,39394465,62328424,18215,ERX622867,ERS463320,ERA375333,SC,Wellcome Sanger Institute,2,0.13419,0.77104,0.06619,0.15595,0.96234,0.83431,0.80856,0.7337,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16558,ERR667378,ERX622866,ERS463319,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548473,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:16Z|External Id:SAMEA2548473|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:16Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 7 sc 1972442|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TCTGCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 7 sc 1972442|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#16,10517292,Illumina sequencing of library 10517292  constructed from sample accession ERS463319 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCTGCTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#16.cram,cram,131783210.0,1013717.0,SC RUN 13256 1#16,0:55 1:75,A:36740307;C:25906782;G:28184476;T:40940400;N:11245,55,75,,,36740307,25906782,28184476,40940400,11245,ERX622866,ERS463319,ERA375333,SC,Wellcome Sanger Institute,2,0.1814,0.75096,0.0779,0.15257,0.94408,0.83615,0.73999,0.70358,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16559,ERR667377,ERX622865,ERS463318,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548472,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548472|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 6 sc 1972441|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TTCTGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 6 sc 1972441|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#15,10517291,Illumina sequencing of library 10517291  constructed from sample accession ERS463318 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTCTGTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#15.cram,cram,297275420.0,2286734.0,SC RUN 13256 1#15,0:55 1:75,A:80591742;C:58460335;G:62097495;T:96099260;N:26588,55,75,,,80591742,58460335,62097495,96099260,26588,ERX622865,ERS463318,ERA375333,SC,Wellcome Sanger Institute,2,0.14856,0.79328,0.08045,0.18298,0.95388,0.82524,0.74068,0.69319,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16560,ERR667376,ERX622864,ERS463317,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548471,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548471|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 5 sc 1972440|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TGTACCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 5 sc 1972440|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#14,10517290,Illumina sequencing of library 10517290  constructed from sample accession ERS463317 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGTACCTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#14.cram,cram,242173750.0,1862875.0,SC RUN 13256 1#14,0:55 1:75,A:72439393;C:44966903;G:51788847;T:72956754;N:21853,55,75,,,72439393,44966903,51788847,72956754,21853,ERX622864,ERS463317,ERA375333,SC,Wellcome Sanger Institute,2,0.13638,0.61957,0.09812,0.16019,0.97009,0.87127,0.57527,0.73119,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16561,ERR667375,ERX622863,ERS463316,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548470,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:16Z|External Id:SAMEA2548470|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:16Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 4 sc 1972439|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TCCGTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 4 sc 1972439|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#13,10517289,Illumina sequencing of library 10517289  constructed from sample accession ERS463316 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCCGTCTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#13.cram,cram,236289560.0,1817612.0,SC RUN 13256 1#13,0:55 1:75,A:65497839;C:45569980;G:50614556;T:74585065;N:22120,55,75,,,65497839,45569980,50614556,74585065,22120,ERX622863,ERS463316,ERA375333,SC,Wellcome Sanger Institute,2,0.16763,0.7428,0.08432,0.16616,0.95217,0.83857,0.73569,0.69906,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16574,ERR667374,ERX622862,ERS463315,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548469,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548469|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 3 sc 1972438|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TAAGCGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 3 sc 1972438|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#12,10517288,Illumina sequencing of library 10517288  constructed from sample accession ERS463315 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TAAGCGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#12.cram,cram,381482400.0,2934480.0,SC RUN 13256 1#12,0:55 1:75,A:108129259;C:71762350;G:76804777;T:124748024;N:37990,55,75,,,108129259,71762350,76804777,124748024,37990,ERX622862,ERS463315,ERA375333,SC,Wellcome Sanger Institute,2,0.15494,0.73749,0.08887,0.16382,0.95747,0.83211,0.76336,0.69077,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16575,ERR667373,ERX622861,ERS463314,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548468,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548468|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 2 sc 1972437|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TCTCGGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 2 sc 1972437|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#11,10517287,Illumina sequencing of library 10517287  constructed from sample accession ERS463314 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TCTCGGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#11.cram,cram,219975210.0,1692117.0,SC RUN 13256 1#11,0:55 1:75,A:62730862;C:43360964;G:45653286;T:68211390;N:18708,55,75,,,62730862,43360964,45653286,68211390,18708,ERX622861,ERS463314,ERA375333,SC,Wellcome Sanger Institute,2,0.1335,0.67379,0.05402,0.14367,0.96319,0.84877,0.81344,0.7263,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16576,ERR667372,ERX622860,ERS463313,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548467,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:05Z|External Id:SAMEA2548467|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:05Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf control 1 sc 1972436|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence TGGTTGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf control 1 sc 1972436|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#10,10517286,Illumina sequencing of library 10517286  constructed from sample accession ERS463313 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGGTTGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#10.cram,cram,289606330.0,2227741.0,SC RUN 13256 1#10,0:55 1:75,A:83619693;C:55715592;G:57603582;T:92639222;N:28241,55,75,,,83619693,55715592,57603582,92639222,28241,ERX622860,ERS463313,ERA375333,SC,Wellcome Sanger Institute,2,0.14312,0.69479,0.08173,0.15101,0.96185,0.84439,0.78182,0.7265,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16577,ERR667371,ERX622859,ERS463312,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548466,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548466|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 12 sc 1972435|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence GATCAGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 12 sc 1972435|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#9,10517285,Illumina sequencing of library 10517285  constructed from sample accession ERS463312 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence GATCAGCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#9.cram,cram,179568740.0,1381298.0,SC RUN 13256 1#9,0:55 1:75,A:48952176;C:34402129;G:36985871;T:59212722;N:15842,55,75,,,48952176,34402129,36985871,59212722,15842,ERX622859,ERS463312,ERA375333,SC,Wellcome Sanger Institute,2,0.16345,0.77594,0.10069,0.16964,0.95864,0.83045,0.78521,0.7004,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16578,ERR667370,ERX622858,ERS463311,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548465,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:04Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548465|INSDC center name:SC|INSDC first public:2014 11 04T16:19:04Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 11 sc 1972434|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence ACTTGATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 11 sc 1972434|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#8,10517284,Illumina sequencing of library 10517284  constructed from sample accession ERS463311 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence ACTTGATG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#8.cram,cram,137020910.0,1054007.0,SC RUN 13256 1#8,0:55 1:75,A:38049625;C:26414574;G:28139253;T:44406481;N:10977,55,75,,,38049625,26414574,28139253,44406481,10977,ERX622858,ERS463311,ERA375333,SC,Wellcome Sanger Institute,2,0.1402,0.74335,0.08322,0.1663,0.96268,0.84043,0.77733,0.71859,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16579,ERR667369,ERX622857,ERS463310,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548464,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:05Z|External Id:SAMEA2548464|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:05Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 10 sc 1972433|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence CAGATCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 10 sc 1972433|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#7,10517283,Illumina sequencing of library 10517283  constructed from sample accession ERS463310 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence CAGATCTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#7.cram,cram,198153410.0,1524257.0,SC RUN 13256 1#7,0:55 1:75,A:52670252;C:39254438;G:42385338;T:63824260;N:19122,55,75,,,52670252,39254438,42385338,63824260,19122,ERX622857,ERS463310,ERA375333,SC,Wellcome Sanger Institute,2,0.12556,0.78468,0.07074,0.18847,0.964,0.83526,0.78795,0.71023,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16580,ERR667368,ERX622856,ERS463309,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548463,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548463|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 9 sc 1972432|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence GCCAATGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 9 sc 1972432|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#6,10517282,Illumina sequencing of library 10517282  constructed from sample accession ERS463309 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence GCCAATGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#6.cram,cram,311861420.0,2398934.0,SC RUN 13256 1#6,0:55 1:75,A:83917355;C:60106233;G:64499135;T:103308448;N:30249,55,75,,,83917355,60106233,64499135,103308448,30249,ERX622856,ERS463309,ERA375333,SC,Wellcome Sanger Institute,2,0.12297,0.80619,0.0593,0.15961,0.96234,0.82248,0.79929,0.70162,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16581,ERR667367,ERX622855,ERS463308,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548462,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548462|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 8 sc 1972431|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence ACAGTGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 8 sc 1972431|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#5,10517281,Illumina sequencing of library 10517281  constructed from sample accession ERS463308 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence ACAGTGGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#5.cram,cram,319355660.0,2456582.0,SC RUN 13256 1#5,0:55 1:75,A:84900314;C:64205253;G:67464229;T:102759467;N:26397,55,75,,,84900314,64205253,67464229,102759467,26397,ERX622855,ERS463308,ERA375333,SC,Wellcome Sanger Institute,2,0.11383,0.78215,0.05838,0.17935,0.96619,0.83727,0.7861,0.72598,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16582,ERR667366,ERX622854,ERS463307,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548461,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:05Z|External Id:SAMEA2548461|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:05Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 7 sc 1972430|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence TGACCACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 7 sc 1972430|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#4,10517280,Illumina sequencing of library 10517280  constructed from sample accession ERS463307 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TGACCACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#4.cram,cram,354540160.0,2727232.0,SC RUN 13256 1#4,0:55 1:75,A:97757414;C:68003475;G:75993436;T:112753315;N:32520,55,75,,,97757414,68003475,75993436,112753315,32520,ERX622854,ERS463307,ERA375333,SC,Wellcome Sanger Institute,2,0.12969,0.72947,0.07042,0.14757,0.9614,0.84017,0.78018,0.71871,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16583,ERR667365,ERX622853,ERS463306,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548460,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548460|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 6 sc 1972429|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence TTAGGCAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 6 sc 1972429|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#3,10517279,Illumina sequencing of library 10517279  constructed from sample accession ERS463306 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence TTAGGCAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#3.cram,cram,602820270.0,4637079.0,SC RUN 13256 1#3,0:55 1:75,A:165474925;C:115590273;G:123825630;T:197870518;N:58924,55,75,,,165474925,115590273,123825630,197870518,58924,ERX622853,ERS463306,ERA375333,SC,Wellcome Sanger Institute,2,0.141,0.74407,0.08834,0.15443,0.96475,0.83958,0.78331,0.7194,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16584,ERR667364,ERX622852,ERS463305,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548459,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548459|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 4 sc 1972428|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence CGATGTTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 4 sc 1972428|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#2,10517278,Illumina sequencing of library 10517278  constructed from sample accession ERS463305 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence CGATGTTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#2.cram,cram,192840440.0,1483388.0,SC RUN 13256 1#2,0:55 1:75,A:53469380;C:37747264;G:40238127;T:61365974;N:19695,55,75,,,53469380,37747264,40238127,61365974,19695,ERX622852,ERS463305,ERA375333,SC,Wellcome Sanger Institute,2,0.14229,0.74015,0.07887,0.16243,0.96357,0.84687,0.7426,0.72806,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16585,ERR667363,ERX622851,ERS463304,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548458,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:04Z|ENA LAST UPDATE:2018 03 08T17:42:05Z|External Id:SAMEA2548458|INSDC center name:SC|INSDC first public:2014 11 04T16:19:04Z|INSDC last update:2018 03 08T17:42:05Z|INSDC status:public|Submitter Id:25Cyclop 05EtOH 24hpf treated 3 sc 1972427|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence ATCACGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:25Cyclop 05EtOH 24hpf treated 3 sc 1972427|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 1#1,10517277,Illumina sequencing of library 10517277  constructed from sample accession ERS463304 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 1.  This submission includes reads tagged with the sequence ATCACGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_1#1.cram,cram,160035720.0,1231044.0,SC RUN 13256 1#1,0:55 1:75,A:44435310;C:30672417;G:33442253;T:51472358;N:13382,55,75,,,44435310,30672417,33442253,51472358,13382,ERX622851,ERS463304,ERA375333,SC,Wellcome Sanger Institute,2,0.13712,0.73194,0.08578,0.14534,0.96617,0.8465,0.77185,0.72507,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16624,ERR667516,ERX623004,ERS463380,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548534,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:35Z|External Id:SAMEA2548534|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:35Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 12 sc 1972503|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GCTCCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 12 sc 1972503|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#77,10517353,Illumina sequencing of library 10517353  constructed from sample accession ERS463380 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GCTCCTTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#77.cram,cram,249438020.0,1918754.0,SC RUN 13256 2#77,0:55 1:75,A:69145824;C:47578386;G:51851786;T:80816909;N:45115,55,75,,,69145824,47578386,51851786,80816909,45115,ERX623004,ERS463380,ERA375333,SC,Wellcome Sanger Institute,2,0.16093,0.76664,0.10187,0.15638,0.95629,0.84127,0.71423,0.71239,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16625,ERR667515,ERX623003,ERS463379,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548533,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548533|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 11 sc 1972502|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GAGCCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 11 sc 1972502|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#76,10517352,Illumina sequencing of library 10517352  constructed from sample accession ERS463379 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GAGCCAAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#76.cram,cram,170774240.0,1313648.0,SC RUN 13256 2#76,0:55 1:75,A:45646116;C:32502967;G:34986649;T:57607203;N:31305,55,75,,,45646116,32502967,34986649,57607203,31305,ERX623003,ERS463379,ERA375333,SC,Wellcome Sanger Institute,2,0.14671,0.76516,0.0975,0.18223,0.96341,0.83007,0.75675,0.48594,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16626,ERR667514,ERX623002,ERS463378,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548532,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548532|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 10 sc 1972501|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GGAATGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 10 sc 1972501|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#75,10517351,Illumina sequencing of library 10517351  constructed from sample accession ERS463378 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GGAATGAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#75.cram,cram,220719590.0,1697843.0,SC RUN 13256 2#75,0:55 1:75,A:59911566;C:41292649;G:43822522;T:75650330;N:42523,55,75,,,59911566,41292649,43822522,75650330,42523,ERX623002,ERS463378,ERA375333,SC,Wellcome Sanger Institute,2,0.16085,0.76121,0.10235,0.17156,0.96351,0.82901,0.8,0.67394,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16627,ERR667513,ERX623001,ERS463377,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548531,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:35Z|External Id:SAMEA2548531|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:35Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 9 sc 1972500|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GTCGCTAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 9 sc 1972500|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#74,10517350,Illumina sequencing of library 10517350  constructed from sample accession ERS463377 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GTCGCTAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#74.cram,cram,229666060.0,1766662.0,SC RUN 13256 2#74,0:55 1:75,A:63689398;C:43511689;G:47122878;T:75300451;N:41644,55,75,,,63689398,43511689,47122878,75300451,41644,ERX623001,ERS463377,ERA375333,SC,Wellcome Sanger Institute,2,0.1466,0.75852,0.08129,0.14878,0.96057,0.83485,0.77591,0.70019,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16628,ERR667512,ERX623000,ERS463376,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548530,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548530|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 8 sc 1972499|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GTTAGCCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 8 sc 1972499|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#73,10517349,Illumina sequencing of library 10517349  constructed from sample accession ERS463376 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GTTAGCCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#73.cram,cram,224679650.0,1728305.0,SC RUN 13256 2#73,0:55 1:75,A:61542748;C:43621774;G:46869683;T:72605002;N:40443,55,75,,,61542748,43621774,46869683,72605002,40443,ERX623000,ERS463376,ERA375333,SC,Wellcome Sanger Institute,2,0.17554,0.74212,0.0938,0.16223,0.96226,0.84378,0.7451,0.72448,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16629,ERR667511,ERX622999,ERS463375,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548529,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548529|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 7 sc 1972498|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GCATGGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 7 sc 1972498|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#72,10517348,Illumina sequencing of library 10517348  constructed from sample accession ERS463375 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GCATGGCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#72.cram,cram,180109150.0,1385455.0,SC RUN 13256 2#72,0:55 1:75,A:48834299;C:35764880;G:37586318;T:57889257;N:34396,55,75,,,48834299,35764880,37586318,57889257,34396,ERX622999,ERS463375,ERA375333,SC,Wellcome Sanger Institute,2,0.16009,0.77006,0.08833,0.17429,0.96463,0.83224,0.79632,0.70825,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16630,ERR667510,ERX622998,ERS463374,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548528,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:35Z|External Id:SAMEA2548528|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:35Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 6 sc 1972497|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GAGGTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 6 sc 1972497|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#71,10517347,Illumina sequencing of library 10517347  constructed from sample accession ERS463374 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GAGGTGCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#71.cram,cram,344860230.0,2652771.0,SC RUN 13256 2#71,0:55 1:75,A:93450440;C:66787313;G:70644952;T:113914061;N:63464,55,75,,,93450440,66787313,70644952,113914061,63464,ERX622998,ERS463374,ERA375333,SC,Wellcome Sanger Institute,2,0.17111,0.77029,0.09436,0.17257,0.96045,0.83526,0.8304,0.70118,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16631,ERR667509,ERX622997,ERS463373,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548527,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548527|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 5 sc 1972496|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GTACATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 5 sc 1972496|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#70,10517346,Illumina sequencing of library 10517346  constructed from sample accession ERS463373 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GTACATCT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#70.cram,cram,204211410.0,1570857.0,SC RUN 13256 2#70,0:55 1:75,A:58101416;C:37689065;G:41121401;T:67264867;N:34661,55,75,,,58101416,37689065,41121401,67264867,34661,ERX622997,ERS463373,ERA375333,SC,Wellcome Sanger Institute,2,0.16013,0.71365,0.09585,0.14597,0.9599,0.83775,0.78419,0.71295,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16632,ERR667508,ERX622996,ERS463372,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548526,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548526|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 3 sc 1972495|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GAATCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 3 sc 1972495|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#69,10517345,Illumina sequencing of library 10517345  constructed from sample accession ERS463372 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GAATCTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#69.cram,cram,285589330.0,2196841.0,SC RUN 13256 2#69,0:55 1:75,A:79978163;C:53207570;G:57011049;T:95339401;N:53147,55,75,,,79978163,53207570,57011049,95339401,53147,ERX622996,ERS463372,ERA375333,SC,Wellcome Sanger Institute,2,0.15431,0.73019,0.10091,0.17766,0.95931,0.83053,0.73476,0.66407,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16633,ERR667507,ERX622995,ERS463371,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548525,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548525|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 2 sc 1972494|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo GGTCGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 2 sc 1972494|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#68,10517344,Illumina sequencing of library 10517344  constructed from sample accession ERS463371 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GGTCGTGT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#68.cram,cram,175917040.0,1353208.0,SC RUN 13256 2#68,0:55 1:75,A:48136980;C:33824238;G:35564261;T:58358935;N:32626,55,75,,,48136980,33824238,35564261,58358935,32626,ERX622995,ERS463371,ERA375333,SC,Wellcome Sanger Institute,2,0.1469,0.78601,0.08955,0.18111,0.96278,0.83329,0.76593,0.70372,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16634,ERR667506,ERX622994,ERS463370,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548524,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548524|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:Cyclop EtOH 24hpf untreated 1 sc 1972493|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo. A 8 base indexing sequence GCAACATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:Cyclop EtOH 24hpf untreated 1 sc 1972493|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#67,10517343,Illumina sequencing of library 10517343  constructed from sample accession ERS463370 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GCAACATT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#67.cram,cram,243582690.0,1873713.0,SC RUN 13256 2#67,0:55 1:75,A:66773263;C:45740911;G:49347715;T:81675425;N:45376,55,75,,,66773263,45740911,49347715,81675425,45376,ERX622994,ERS463370,ERA375333,SC,Wellcome Sanger Institute,2,0.14139,0.74076,0.09723,0.17792,0.96542,0.83431,0.76222,0.68452,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16635,ERR667505,ERX622993,ERS463369,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548523,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548523|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 12 sc 1972492|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence GACGGATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 12 sc 1972492|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#66,10517342,Illumina sequencing of library 10517342  constructed from sample accession ERS463369 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GACGGATT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#66.cram,cram,207570740.0,1596698.0,SC RUN 13256 2#66,0:55 1:75,A:57266890;C:39171372;G:41194213;T:69897927;N:40338,55,75,,,57266890,39171372,41194213,69897927,40338,ERX622993,ERS463369,ERA375333,SC,Wellcome Sanger Institute,2,0.15746,0.74665,0.10255,0.15541,0.9637,0.83404,0.78914,0.70562,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16636,ERR667504,ERX622992,ERS463368,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548522,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548522|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 11 sc 1972491|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence GTGTCCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 11 sc 1972491|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#65,10517341,Illumina sequencing of library 10517341  constructed from sample accession ERS463368 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GTGTCCTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#65.cram,cram,314469870.0,2418999.0,SC RUN 13256 2#65,0:55 1:75,A:88336552;C:58988649;G:64125630;T:102962911;N:56128,55,75,,,88336552,58988649,64125630,102962911,56128,ERX622992,ERS463368,ERA375333,SC,Wellcome Sanger Institute,2,0.1458,0.7367,0.08832,0.17065,0.95609,0.84196,0.70818,0.70804,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16637,ERR667503,ERX622991,ERS463367,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548521,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548521|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 10 sc 1972490|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence GATCTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 10 sc 1972490|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#64,10517340,Illumina sequencing of library 10517340  constructed from sample accession ERS463367 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GATCTCTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#64.cram,cram,251879030.0,1937531.0,SC RUN 13256 2#64,0:55 1:75,A:69471130;C:48023118;G:52025932;T:82313657;N:45193,55,75,,,69471130,48023118,52025932,82313657,45193,ERX622991,ERS463367,ERA375333,SC,Wellcome Sanger Institute,2,0.14731,0.74998,0.0805,0.15499,0.96043,0.84015,0.78478,0.70671,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16638,ERR667502,ERX622990,ERS463366,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548520,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548520|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 9 sc 1972489|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence GGTGAGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 9 sc 1972489|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#63,10517339,Illumina sequencing of library 10517339  constructed from sample accession ERS463366 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence GGTGAGTT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#63.cram,cram,308971000.0,2376700.0,SC RUN 13256 2#63,0:55 1:75,A:86171740;C:58373079;G:60925251;T:103446461;N:54469,55,75,,,86171740,58373079,60925251,103446461,54469,ERX622990,ERS463366,ERA375333,SC,Wellcome Sanger Institute,2,0.17185,0.74743,0.10434,0.1576,0.95808,0.82942,0.76297,0.66607,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16639,ERR667501,ERX622989,ERS463365,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548519,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548519|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 8 sc 1972488|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TGCGTGAA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 8 sc 1972488|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#62,10517338,Illumina sequencing of library 10517338  constructed from sample accession ERS463365 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGCGTGAA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#62.cram,cram,162914050.0,1253185.0,SC RUN 13256 2#62,0:55 1:75,A:45574477;C:30634972;G:32313708;T:54358071;N:32822,55,75,,,45574477,30634972,32313708,54358071,32822,ERX622989,ERS463365,ERA375333,SC,Wellcome Sanger Institute,2,0.14734,0.73224,0.09442,0.15906,0.96096,0.83183,0.77082,0.70921,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16640,ERR667500,ERX622988,ERS463364,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548518,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548518|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 7 sc 1972487|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TACCACCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 7 sc 1972487|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#61,10517337,Illumina sequencing of library 10517337  constructed from sample accession ERS463364 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TACCACCA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#61.cram,cram,256774050.0,1975185.0,SC RUN 13256 2#61,0:55 1:75,A:68632969;C:49306370;G:56045607;T:82743852;N:45252,55,75,,,68632969,49306370,56045607,82743852,45252,ERX622988,ERS463364,ERA375333,SC,Wellcome Sanger Institute,2,0.1392,0.75973,0.07044,0.17409,0.96272,0.83392,0.72623,0.68766,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16641,ERR667499,ERX622987,ERS463363,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548517,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548517|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 6 sc 1972486|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TGAAGCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 6 sc 1972486|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#60,10517336,Illumina sequencing of library 10517336  constructed from sample accession ERS463363 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGAAGCCA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#60.cram,cram,97799000.0,752300.0,SC RUN 13256 2#60,0:55 1:75,A:28908336;C:17654195;G:20732658;T:30487296;N:16515,55,75,,,28908336,17654195,20732658,30487296,16515,ERX622987,ERS463363,ERA375333,SC,Wellcome Sanger Institute,2,0.17147,0.5597,0.13218,0.17023,0.9624,0.86529,0.68647,0.62214,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16642,ERR667498,ERX622986,ERS463362,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548516,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548516|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 5 sc 1972485|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TTGTTCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 5 sc 1972485|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#59,10517335,Illumina sequencing of library 10517335  constructed from sample accession ERS463362 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TTGTTCCA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#59.cram,cram,341980860.0,2630622.0,SC RUN 13256 2#59,0:55 1:75,A:99137604;C:62390787;G:69165003;T:111225483;N:61983,55,75,,,99137604,62390787,69165003,111225483,61983,ERX622986,ERS463362,ERA375333,SC,Wellcome Sanger Institute,2,0.13947,0.70735,0.08606,0.14889,0.95793,0.83737,0.73607,0.70558,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16643,ERR667497,ERX622985,ERS463361,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548515,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548515|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 4 sc 1972484|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TCTCTTCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 4 sc 1972484|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#58,10517334,Illumina sequencing of library 10517334  constructed from sample accession ERS463361 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCTCTTCA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#58.cram,cram,241695740.0,1859198.0,SC RUN 13256 2#58,0:55 1:75,A:67483457;C:45908261;G:51825901;T:76444495;N:33626,55,75,,,67483457,45908261,51825901,76444495,33626,ERX622985,ERS463361,ERA375333,SC,Wellcome Sanger Institute,2,0.15059,0.73203,0.07858,0.15167,0.95191,0.84149,0.71001,0.71764,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16644,ERR667496,ERX622984,ERS463360,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548514,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548514|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 3 sc 1972483|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TGTGAAGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 3 sc 1972483|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#57,10517333,Illumina sequencing of library 10517333  constructed from sample accession ERS463360 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGTGAAGA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#57.cram,cram,294529300.0,2265610.0,SC RUN 13256 2#57,0:55 1:75,A:80911197;C:55431752;G:58915295;T:99214391;N:56665,55,75,,,80911197,55431752,58915295,99214391,56665,ERX622984,ERS463360,ERA375333,SC,Wellcome Sanger Institute,2,0.15273,0.75282,0.09222,0.14317,0.9553,0.81836,0.73549,0.63092,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16645,ERR667495,ERX622983,ERS463359,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548513,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548513|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 2 sc 1972482|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TAGACGGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 2 sc 1972482|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#56,10517332,Illumina sequencing of library 10517332  constructed from sample accession ERS463359 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TAGACGGA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#56.cram,cram,202264270.0,1555879.0,SC RUN 13256 2#56,0:55 1:75,A:54932792;C:38583828;G:40507787;T:68203846;N:36017,55,75,,,54932792,38583828,40507787,68203846,36017,ERX622983,ERS463359,ERA375333,SC,Wellcome Sanger Institute,2,0.14702,0.77839,0.09083,0.16547,0.96303,0.82812,0.7834,0.70119,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16646,ERR667494,ERX622982,ERS463358,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548512,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548512|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf control 1 sc 1972481|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence TGCTGATA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf control 1 sc 1972481|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#55,10517331,Illumina sequencing of library 10517331  constructed from sample accession ERS463358 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGCTGATA.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#55.cram,cram,297703380.0,2290026.0,SC RUN 13256 2#55,0:55 1:75,A:82458105;C:56051213;G:59934316;T:99204983;N:54763,55,75,,,82458105,56051213,59934316,99204983,54763,ERX622982,ERS463358,ERA375333,SC,Wellcome Sanger Institute,2,0.13291,0.75444,0.08292,0.1587,0.96246,0.83254,0.755,0.68363,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16647,ERR667493,ERX622981,ERS463357,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548511,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548511|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 11 sc 1972480|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TGACAGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 11 sc 1972480|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#54,10517330,Illumina sequencing of library 10517330  constructed from sample accession ERS463357 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGACAGAC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#54.cram,cram,218072010.0,1677477.0,SC RUN 13256 2#54,0:55 1:75,A:61093975;C:39778840;G:43760899;T:73396637;N:41659,55,75,,,61093975,39778840,43760899,73396637,41659,ERX622981,ERS463357,ERA375333,SC,Wellcome Sanger Institute,2,0.16047,0.7106,0.10879,0.16806,0.96422,0.83915,0.78268,0.69376,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16648,ERR667492,ERX622980,ERS463356,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548510,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548510|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 10 sc 1972479|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TCTACGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 10 sc 1972479|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#53,10517329,Illumina sequencing of library 10517329  constructed from sample accession ERS463356 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCTACGAC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#53.cram,cram,509358850.0,3918145.0,SC RUN 13256 2#53,0:55 1:75,A:140388988;C:95697642;G:106410742;T:166769064;N:92414,55,75,,,140388988,95697642,106410742,166769064,92414,ERX622980,ERS463356,ERA375333,SC,Wellcome Sanger Institute,2,0.13661,0.75307,0.08616,0.17548,0.96432,0.83502,0.74679,0.68782,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16649,ERR667491,ERX622979,ERS463355,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548509,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548509|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 9 sc 1972478|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TTGCGTAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 9 sc 1972478|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#52,10517328,Illumina sequencing of library 10517328  constructed from sample accession ERS463355 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TTGCGTAC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#52.cram,cram,255332350.0,1964095.0,SC RUN 13256 2#52,0:55 1:75,A:70872584;C:48527606;G:52560465;T:83324003;N:47692,55,75,,,70872584,48527606,52560465,83324003,47692,ERX622979,ERS463355,ERA375333,SC,Wellcome Sanger Institute,2,0.13272,0.75673,0.0804,0.17749,0.96189,0.83213,0.46766,0.69013,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16650,ERR667490,ERX622978,ERS463354,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548508,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:58Z|External Id:SAMEA2548508|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:58Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 8 sc 1972477|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TTCGCACC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 8 sc 1972477|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#51,10517327,Illumina sequencing of library 10517327  constructed from sample accession ERS463354 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TTCGCACC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#51.cram,cram,276069560.0,2123612.0,SC RUN 13256 2#51,0:55 1:75,A:75811087;C:52087361;G:59028600;T:89093168;N:49344,55,75,,,75811087,52087361,59028600,89093168,49344,ERX622978,ERS463354,ERA375333,SC,Wellcome Sanger Institute,2,0.13778,0.74502,0.07924,0.17616,0.96148,0.83808,0.77616,0.702,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16651,ERR667489,ERX622977,ERS463353,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548507,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548507|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 6 sc 1972476|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TGTTCTCC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 6 sc 1972476|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#50,10517326,Illumina sequencing of library 10517326  constructed from sample accession ERS463353 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGTTCTCC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#50.cram,cram,253642090.0,1951093.0,SC RUN 13256 2#50,0:55 1:75,A:71258523;C:48222121;G:53455780;T:80659670;N:45996,55,75,,,71258523,48222121,53455780,80659670,45996,ERX622977,ERS463353,ERA375333,SC,Wellcome Sanger Institute,2,0.1473,0.72851,0.07488,0.1704,0.95509,0.84135,0.7657,0.72125,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16652,ERR667488,ERX622976,ERS463352,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548506,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548506|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 5 sc 1972475|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TACCGAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 5 sc 1972475|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#49,10517325,Illumina sequencing of library 10517325  constructed from sample accession ERS463352 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TACCGAGC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#49.cram,cram,207861680.0,1598936.0,SC RUN 13256 2#49,0:55 1:75,A:56778561;C:39795780;G:42924761;T:68326110;N:36468,55,75,,,56778561,39795780,42924761,68326110,36468,ERX622976,ERS463352,ERA375333,SC,Wellcome Sanger Institute,2,0.15176,0.78586,0.09667,0.18774,0.96272,0.83546,0.76883,0.70036,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16653,ERR667487,ERX622975,ERS463351,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548505,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548505|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 4 sc 1972474|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TCGTTAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 4 sc 1972474|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#48,10517324,Illumina sequencing of library 10517324  constructed from sample accession ERS463351 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCGTTAGC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#48.cram,cram,253084780.0,1946806.0,SC RUN 13256 2#48,0:55 1:75,A:71315658;C:47904374;G:51471062;T:82346415;N:47271,55,75,,,71315658,47904374,51471062,82346415,47271,ERX622975,ERS463351,ERA375333,SC,Wellcome Sanger Institute,2,0.14232,0.73316,0.08395,0.16382,0.96148,0.83838,0.76179,0.71042,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16654,ERR667486,ERX622974,ERS463350,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548504,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548504|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 3 sc 1972473|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TTACTCGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 3 sc 1972473|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#47,10517323,Illumina sequencing of library 10517323  constructed from sample accession ERS463350 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TTACTCGC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#47.cram,cram,257634260.0,1981802.0,SC RUN 13256 2#47,0:55 1:75,A:71689809;C:49348101;G:54614780;T:81936268;N:45302,55,75,,,71689809,49348101,54614780,81936268,45302,ERX622974,ERS463350,ERA375333,SC,Wellcome Sanger Institute,2,0.13411,0.76448,0.07469,0.17894,0.96297,0.84293,0.7695,0.71648,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16655,ERR667485,ERX622973,ERS463349,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548503,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548503|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 2 sc 1972472|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TATGTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 2 sc 1972472|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#46,10517322,Illumina sequencing of library 10517322  constructed from sample accession ERS463349 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TATGTGGC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#46.cram,cram,186109560.0,1431612.0,SC RUN 13256 2#46,0:55 1:75,A:51533707;C:36434279;G:37750018;T:60357177;N:34379,55,75,,,51533707,36434279,37750018,60357177,34379,ERX622973,ERS463349,ERA375333,SC,Wellcome Sanger Institute,2,0.11559,0.76255,0.06697,0.17873,0.96607,0.8355,0.76736,0.6692,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16656,ERR667484,ERX622972,ERS463348,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548502,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548502|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:75Cyclop 0 15EtOH 24hpf treated 1 sc 1972471|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence TGTCTATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:75Cyclop 0 15EtOH 24hpf treated 1 sc 1972471|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#45,10517321,Illumina sequencing of library 10517321  constructed from sample accession ERS463348 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGTCTATC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#45.cram,cram,305135220.0,2347194.0,SC RUN 13256 2#45,0:55 1:75,A:86175563;C:57875149;G:63431639;T:97596620;N:56249,55,75,,,86175563,57875149,63431639,97596620,56249,ERX622972,ERS463348,ERA375333,SC,Wellcome Sanger Institute,2,0.13184,0.73072,0.07513,0.1757,0.96104,0.84384,0.75582,0.70905,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16657,ERR667483,ERX622971,ERS463347,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548501,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548501|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 12 sc 1972470|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TACTAGTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 12 sc 1972470|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#44,10517320,Illumina sequencing of library 10517320  constructed from sample accession ERS463347 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TACTAGTC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#44.cram,cram,263413020.0,2026254.0,SC RUN 13256 2#44,0:55 1:75,A:72640543;C:49726100;G:54298860;T:86696357;N:51160,55,75,,,72640543,49726100,54298860,86696357,51160,ERX622971,ERS463347,ERA375333,SC,Wellcome Sanger Institute,2,0.14368,0.74393,0.09044,0.18014,0.96641,0.84218,0.79444,0.7138,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16658,ERR667482,ERX622970,ERS463346,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548500,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548500|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 11 sc 1972469|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCAGATTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 11 sc 1972469|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#43,10517319,Illumina sequencing of library 10517319  constructed from sample accession ERS463346 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCAGATTC.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#43.cram,cram,189721610.0,1459397.0,SC RUN 13256 2#43,0:55 1:75,A:51009871;C:36272946;G:39095454;T:63307390;N:35949,55,75,,,51009871,36272946,39095454,63307390,35949,ERX622970,ERS463346,ERA375333,SC,Wellcome Sanger Institute,2,0.13502,0.76392,0.08823,0.19311,0.9681,0.83723,0.78511,0.69825,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16659,ERR667481,ERX622969,ERS463345,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548499,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:04Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548499|INSDC center name:SC|INSDC first public:2014 11 04T16:19:04Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 10 sc 1972468|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TATGCCAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 10 sc 1972468|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#42,10517318,Illumina sequencing of library 10517318  constructed from sample accession ERS463345 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TATGCCAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#42.cram,cram,354555240.0,2727348.0,SC RUN 13256 2#42,0:55 1:75,A:100052413;C:65285576;G:70378011;T:118775003;N:64237,55,75,,,100052413,65285576,70378011,118775003,64237,ERX622969,ERS463345,ERA375333,SC,Wellcome Sanger Institute,2,0.17045,0.73061,0.11224,0.15687,0.95881,0.83447,0.77331,0.69662,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16660,ERR667480,ERX622968,ERS463344,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548498,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548498|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 9 sc 1972467|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TGGCTCAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 9 sc 1972467|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#41,10517317,Illumina sequencing of library 10517317  constructed from sample accession ERS463344 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGGCTCAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#41.cram,cram,105704300.0,813110.0,SC RUN 13256 2#41,0:55 1:75,A:28368942;C:20557320;G:21814318;T:34945096;N:18624,55,75,,,28368942,20557320,21814318,34945096,18624,ERX622968,ERS463344,ERA375333,SC,Wellcome Sanger Institute,2,0.15462,0.78664,0.08518,0.17078,0.95775,0.83002,0.78784,0.69503,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16661,ERR667479,ERX622967,ERS463343,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548497,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548497|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 8 sc 1972466|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCATTGAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 8 sc 1972466|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#40,10517316,Illumina sequencing of library 10517316  constructed from sample accession ERS463343 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCATTGAG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#40.cram,cram,278169060.0,2139762.0,SC RUN 13256 2#40,0:55 1:75,A:76045587;C:53220059;G:56734078;T:92115435;N:53901,55,75,,,76045587,53220059,56734078,92115435,53901,ERX622967,ERS463343,ERA375333,SC,Wellcome Sanger Institute,2,0.15264,0.77152,0.09535,0.17835,0.95933,0.82672,0.74054,0.68052,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16662,ERR667478,ERX622966,ERS463342,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548496,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548496|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 7 sc 1972465|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TGTATGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 7 sc 1972465|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#39,10517315,Illumina sequencing of library 10517315  constructed from sample accession ERS463342 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGTATGCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#39.cram,cram,292803550.0,2252335.0,SC RUN 13256 2#39,0:55 1:75,A:81239682;C:56229967;G:58828738;T:96453038;N:52125,55,75,,,81239682,56229967,58828738,96453038,52125,ERX622966,ERS463342,ERA375333,SC,Wellcome Sanger Institute,2,0.14227,0.78534,0.08761,0.17307,0.96177,0.83317,0.78767,0.71141,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16663,ERR667477,ERX622965,ERS463341,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548495,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548495|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 6 sc 1972464|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCCAGTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 6 sc 1972464|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#38,10517314,Illumina sequencing of library 10517314  constructed from sample accession ERS463341 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCCAGTCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#38.cram,cram,241588750.0,1858375.0,SC RUN 13256 2#38,0:55 1:75,A:65889812;C:46399849;G:50455624;T:78807255;N:36210,55,75,,,65889812,46399849,50455624,78807255,36210,ERX622965,ERS463341,ERA375333,SC,Wellcome Sanger Institute,2,0.16467,0.76422,0.09821,0.17298,0.95599,0.83619,0.73767,0.69807,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16664,ERR667476,ERX622964,ERS463340,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548494,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548494|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 5 sc 1972463|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TAAGTTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 5 sc 1972463|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#37,10517313,Illumina sequencing of library 10517313  constructed from sample accession ERS463340 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TAAGTTCG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#37.cram,cram,182699400.0,1405380.0,SC RUN 13256 2#37,0:55 1:75,A:50918661;C:34099680;G:36357161;T:61291652;N:32246,55,75,,,50918661,34099680,36357161,61291652,32246,ERX622964,ERS463340,ERA375333,SC,Wellcome Sanger Institute,2,0.16029,0.75263,0.09973,0.16364,0.9598,0.83187,0.77118,0.70206,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16665,ERR667475,ERX622963,ERS463339,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548493,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548493|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 4 sc 1972462|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCAGGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 4 sc 1972462|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#36,10517312,Illumina sequencing of library 10517312  constructed from sample accession ERS463339 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCAGGAGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#36.cram,cram,171374190.0,1318263.0,SC RUN 13256 2#36,0:55 1:75,A:44924896;C:34434919;G:35624825;T:56357186;N:32364,55,75,,,44924896,34434919,35624825,56357186,32364,ERX622963,ERS463339,ERA375333,SC,Wellcome Sanger Institute,2,0.13227,0.81816,0.06603,0.18746,0.95726,0.81799,0.7797,0.68446,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16666,ERR667474,ERX622962,ERS463338,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548492,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:34Z|External Id:SAMEA2548492|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:34Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 3 sc 1972461|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TCTCACGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 3 sc 1972461|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#35,10517311,Illumina sequencing of library 10517311  constructed from sample accession ERS463338 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCTCACGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#35.cram,cram,263170310.0,2024387.0,SC RUN 13256 2#35,0:55 1:75,A:73136385;C:50238686;G:54527774;T:85221427;N:46038,55,75,,,73136385,50238686,54527774,85221427,46038,ERX622962,ERS463338,ERA375333,SC,Wellcome Sanger Institute,2,0.17551,0.74824,0.11285,0.17999,0.95872,0.84273,0.74446,0.70417,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16667,ERR667473,ERX622961,ERS463337,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548491,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548491|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf control 2 sc 1972460|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence TACTTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf control 2 sc 1972460|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#34,10517310,Illumina sequencing of library 10517310  constructed from sample accession ERS463337 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TACTTCGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#34.cram,cram,292289660.0,2248382.0,SC RUN 13256 2#34,0:55 1:75,A:80985500;C:56411135;G:60498666;T:94341791;N:52568,55,75,,,80985500,56411135,60498666,94341791,52568,ERX622961,ERS463337,ERA375333,SC,Wellcome Sanger Institute,2,0.16512,0.76629,0.09969,0.16144,0.9595,0.84336,0.78471,0.72185,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16668,ERR667472,ERX622960,ERS463336,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548490,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548490|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 12 sc 1972459|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TGAACTGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 12 sc 1972459|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#33,10517309,Illumina sequencing of library 10517309  constructed from sample accession ERS463336 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGAACTGG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#33.cram,cram,160173650.0,1232105.0,SC RUN 13256 2#33,0:55 1:75,A:44771521;C:31151534;G:32520116;T:51701280;N:29199,55,75,,,44771521,31151534,32520116,51701280,29199,ERX622960,ERS463336,ERA375333,SC,Wellcome Sanger Institute,2,0.14489,0.72157,0.09637,0.17037,0.96453,0.84571,0.764,0.7163,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16669,ERR667471,ERX622959,ERS463335,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548489,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548489|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 11 sc 1972458|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TTGGTATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 11 sc 1972458|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#32,10517308,Illumina sequencing of library 10517308  constructed from sample accession ERS463335 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TTGGTATG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#32.cram,cram,232133980.0,1785646.0,SC RUN 13256 2#32,0:55 1:75,A:66364519;C:43727707;G:45048630;T:76949127;N:43997,55,75,,,66364519,43727707,45048630,76949127,43997,ERX622959,ERS463335,ERA375333,SC,Wellcome Sanger Institute,2,0.16276,0.71376,0.10014,0.16096,0.95986,0.83638,0.77843,0.69344,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16670,ERR667470,ERX622958,ERS463334,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548488,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548488|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 10 sc 1972457|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TAACGCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 10 sc 1972457|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#31,10517307,Illumina sequencing of library 10517307  constructed from sample accession ERS463334 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TAACGCTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#31.cram,cram,170546740.0,1311898.0,SC RUN 13256 2#31,0:55 1:75,A:47508459;C:32305694;G:34471533;T:56228553;N:32501,55,75,,,47508459,32305694,34471533,56228553,32501,ERX622958,ERS463334,ERA375333,SC,Wellcome Sanger Institute,2,0.15832,0.76166,0.09428,0.15425,0.96081,0.8382,0.79681,0.43498,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16671,ERR667469,ERX622957,ERS463333,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548487,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548487|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 9 sc 1972456|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TCGAAGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 9 sc 1972456|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#30,10517306,Illumina sequencing of library 10517306  constructed from sample accession ERS463333 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCGAAGTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#30.cram,cram,246691770.0,1897629.0,SC RUN 13256 2#30,0:55 1:75,A:65073306;C:48805438;G:51157306;T:81610435;N:45285,55,75,,,65073306,48805438,51157306,81610435,45285,ERX622957,ERS463333,ERA375333,SC,Wellcome Sanger Institute,2,0.13647,0.80889,0.08442,0.19789,0.96457,0.82913,0.77404,0.70332,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16672,ERR667468,ERX622956,ERS463332,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548486,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548486|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 8 sc 1972455|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TTCCATTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 8 sc 1972455|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#29,10517305,Illumina sequencing of library 10517305  constructed from sample accession ERS463332 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TTCCATTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#29.cram,cram,237841370.0,1829549.0,SC RUN 13256 2#29,0:55 1:75,A:69053045;C:43828395;G:47245910;T:77669615;N:44405,55,75,,,69053045,43828395,47245910,77669615,44405,ERX622956,ERS463332,ERA375333,SC,Wellcome Sanger Institute,2,0.13792,0.71106,0.08122,0.13525,0.95749,0.83713,0.72915,0.72247,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16673,ERR667467,ERX622955,ERS463331,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548485,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:17Z|External Id:SAMEA2548485|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:17Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 7 sc 1972454|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TAGTCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 7 sc 1972454|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#28,10517304,Illumina sequencing of library 10517304  constructed from sample accession ERS463331 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TAGTCTTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#28.cram,cram,395421000.0,3041700.0,SC RUN 13256 2#28,0:55 1:75,A:112063422;C:75578302;G:80204553;T:127499032;N:75691,55,75,,,112063422,75578302,80204553,127499032,75691,ERX622955,ERS463331,ERA375333,SC,Wellcome Sanger Institute,2,0.13452,0.7476,0.07406,0.14118,0.95982,0.83603,0.75528,0.7109,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16674,ERR667466,ERX622954,ERS463330,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548484,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548484|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 6 sc 1972453|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TGTGGTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 6 sc 1972453|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#27,10517303,Illumina sequencing of library 10517303  constructed from sample accession ERS463330 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TGTGGTTG.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#27.cram,cram,285813970.0,2198569.0,SC RUN 13256 2#27,0:55 1:75,A:82344319;C:54890353;G:55655734;T:92868778;N:54786,55,75,,,82344319,54890353,55655734,92868778,54786,ERX622954,ERS463330,ERA375333,SC,Wellcome Sanger Institute,2,0.15142,0.71489,0.08409,0.14363,0.9573,0.83932,0.78661,0.72275,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16675,ERR667465,ERX622953,ERS463329,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548483,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:41:33Z|External Id:SAMEA2548483|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:41:33Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 5 sc 1972452|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TCCTCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 5 sc 1972452|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#26,10517302,Illumina sequencing of library 10517302  constructed from sample accession ERS463329 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TCCTCAAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#26.cram,cram,332169890.0,2555153.0,SC RUN 13256 2#26,0:55 1:75,A:93877339;C:61899980;G:69452973;T:106881464;N:58134,55,75,,,93877339,61899980,69452973,106881464,58134,ERX622953,ERS463329,ERA375333,SC,Wellcome Sanger Institute,2,0.13399,0.6933,0.07548,0.14983,0.95629,0.83599,0.72161,0.70879,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16676,ERR667464,ERX622952,ERS463328,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548482,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:16Z|External Id:SAMEA2548482|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:16Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 4 sc 1972451|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TACAGGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 4 sc 1972451|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#25,10517301,Illumina sequencing of library 10517301  constructed from sample accession ERS463328 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TACAGGAT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#25.cram,cram,476077940.0,3662138.0,SC RUN 13256 2#25,0:55 1:75,A:132016435;C:90700793;G:97586668;T:155684639;N:89405,55,75,,,132016435,90700793,97586668,155684639,89405,ERX622952,ERS463328,ERA375333,SC,Wellcome Sanger Institute,2,0.13581,0.73752,0.07229,0.14903,0.96282,0.83487,0.81091,0.71507,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
16677,ERR667463,ERX622951,ERS463327,ERP008536,PRJEB7614,Screening zebrafish embryos treated with small molecules by transcriptome profiling,Screening_zebrafish_embryos_treated_with_small_molecules_by_transcriptome_profiling-sc-3143,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from RNA of zebrafish embryos treated with small molecules and their corresponding solvent treated and untreated controls.,,,,,SAMEA2548481,SC,ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 11 04T16:19:03Z|ENA LAST UPDATE:2018 03 08T17:42:43Z|External Id:SAMEA2548481|INSDC center name:SC|INSDC first public:2014 11 04T16:19:03Z|INSDC last update:2018 03 08T17:42:43Z|INSDC status:public|Submitter Id:50Cyclop 0 1EtOH 24hpf treated 3 sc 1972450|common name:zebrafish|sample description:3 prime end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence TAGTGACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:50Cyclop 0 1EtOH 24hpf treated 3 sc 1972450|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 13256 2#24,10517300,Illumina sequencing of library 10517300  constructed from sample accession ERS463327 for study accession ERP008536.  This is part of an Illumina multiplexed sequencing run 13256 2.  This submission includes reads tagged with the sequence TAGTGACT.,qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP008536,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2014 11 04|ENA LAST UPDATE:2018 11 16,13256_2#24.cram,cram,297345880.0,2287276.0,SC RUN 13256 2#24,0:55 1:75,A:83397582;C:56132960;G:59993346;T:97767694;N:54298,55,75,,,83397582,56132960,59993346,97767694,54298,ERX622951,ERS463327,ERA375333,SC,Wellcome Sanger Institute,2,0.14572,0.74098,0.08404,0.14582,0.96408,0.83855,0.82139,0.71468,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2014-11-04,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures