rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
63228,SRR13674931,SRX10064377,SRS8226455,SRP305613,PRJNA701156,Zebrafish muscle transcriptome sequencing,PRJNA701156,Other,,,,,RTL1 3,P5 FRAS192293744 1a,,strain:AB|age:90.6 days|sex:male|tissue:muscle|treatment:transgened|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio: adult male muscle,P5,P5,Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP305613,,,P5_FRAS192293744-1a_1.fq.gz P5_FRAS192293744-1a_2.fq.gz,fastq fastq,6771953100.0,22573177.0,P5 FRAS192293744 1a 1.fq.gz,0:150 1:150,A:1754412294;C:1641284715;G:1642201960;T:1733881630;N:172501,150,150,,,1754412294,1641284715,1642201960,1733881630,172501,SRX10064377,SRS8226455,SRA1194342,Huazhong Agricultural University|College of Animal Science and Technology,Huazhong Agricultural University,2,0.9658,0.96585,0.03234,0.03214,0.81235,0.81176,0.56443,0.56428,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,nebnext,bulk,unknown,unknown,,China,2021-02-10,Adult,Adult,Muscle,Muscular System
63229,SRR13674932,SRX10064376,SRS8226454,SRP305613,PRJNA701156,Zebrafish muscle transcriptome sequencing,PRJNA701156,Other,,,,,RTL1 2,P2 FRAS192293743 1a,,strain:AB|age:90.8 days|sex:male|tissue:muscle|treatment:transgened|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio: adult male muscle,P2,P2,Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP305613,,,P2_FRAS192293743-1a_1.fq.gz P2_FRAS192293743-1a_2.fq.gz,fastq fastq,7086156600.0,23620522.0,P2 FRAS192293743 1a 1.fq.gz,0:150 1:150,A:1829494749;C:1728310792;G:1726602123;T:1801558967;N:189969,150,150,,,1829494749,1728310792,1726602123,1801558967,189969,SRX10064376,SRS8226454,SRA1194342,Huazhong Agricultural University|College of Animal Science and Technology,Huazhong Agricultural University,2,0.94572,0.94586,0.03299,0.03368,0.8085,0.809,0.54521,0.54511,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,nebnext,bulk,unknown,unknown,,China,2021-02-10,Adult,Adult,Muscle,Muscular System
63230,SRR13674933,SRX10064375,SRS8226453,SRP305613,PRJNA701156,Zebrafish muscle transcriptome sequencing,PRJNA701156,Other,,,,,RTL1 1,P1 FRAS192293742 1a,,strain:AB|age:90.2 days|sex:male|tissue:muscle|treatment:transgened|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio: adult male muscle,P1,P1,Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP305613,,,P1_FRAS192293742-1a_1.fq.gz P1_FRAS192293742-1a_2.fq.gz,fastq fastq,6459334500.0,21531115.0,P1 FRAS192293742 1a 1.fq.gz,0:150 1:150,A:1673495801;C:1568402960;G:1568786891;T:1648475694;N:173154,150,150,,,1673495801,1568402960,1568786891,1648475694,173154,SRX10064375,SRS8226453,SRA1194342,Huazhong Agricultural University|College of Animal Science and Technology,Huazhong Agricultural University,2,0.9703,0.97063,0.03357,0.03364,0.81657,0.81765,0.57269,0.54967,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,nebnext,bulk,unknown,unknown,,China,2021-02-10,Adult,Adult,Muscle,Muscular System
63231,SRR13674934,SRX10064374,SRS8226452,SRP305613,PRJNA701156,Zebrafish muscle transcriptome sequencing,PRJNA701156,Other,,,,,Control 3,C4 FRAS192293741 1a,,strain:AB|age:90.5 days|sex:male|tissue:muscle|treatment:no|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio: adult male muscle,C4,C4,Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP305613,,,C4_FRAS192293741-1a_1.fq.gz C4_FRAS192293741-1a_2.fq.gz,fastq fastq,7438432200.0,24794774.0,C4 FRAS192293741 1a 1.fq.gz,0:150 1:150,A:1873929323;C:1856432531;G:1861416319;T:1846451050;N:202977,150,150,,,1873929323,1856432531,1861416319,1846451050,202977,SRX10064374,SRS8226452,SRA1194342,Huazhong Agricultural University|College of Animal Science and Technology,Huazhong Agricultural University,2,0.91395,0.91431,0.03002,0.0299,0.82546,0.82542,0.53591,0.5362,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,nebnext,bulk,unknown,unknown,,China,2021-02-10,Adult,Adult,Muscle,Muscular System
63232,SRR13674935,SRX10064373,SRS8226451,SRP305613,PRJNA701156,Zebrafish muscle transcriptome sequencing,PRJNA701156,Other,,,,,Control 2,C3 FRAS192293740 1a,,strain:AB|age:90.1 days|sex:male|tissue:muscle|treatment:no|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio: adult male muscle,C3,C3,Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP305613,,,C3_FRAS192293740-1a_1.fq.gz C3_FRAS192293740-1a_2.fq.gz,fastq fastq,9010307400.0,30034358.0,C3 FRAS192293740 1a 1.fq.gz,0:150 1:150,A:2348033685;C:2178627989;G:2176071816;T:2307406587;N:167323,150,150,,,2348033685,2178627989,2176071816,2307406587,167323,SRX10064373,SRS8226451,SRA1194342,Huazhong Agricultural University|College of Animal Science and Technology,Huazhong Agricultural University,2,0.96511,0.96401,0.03416,0.03393,0.80503,0.8056,0.56138,0.54155,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,nebnext,bulk,unknown,unknown,,China,2021-02-10,Adult,Adult,Muscle,Muscular System
63233,SRR13674936,SRX10064372,SRS8226450,SRP305613,PRJNA701156,Zebrafish muscle transcriptome sequencing,PRJNA701156,Other,,,,,Control 1,C1 FRAS192293739 1a,,strain:AB|age:90.3 days|sex:male|tissue:muscle|treatment:no|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio: adult male muscle,C1,C1,Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP305613,,,C1_FRAS192293739-1a_1.fq.gz C1_FRAS192293739-1a_2.fq.gz,fastq fastq,7559059800.0,25196866.0,C1 FRAS192293739 1a 1.fq.gz,0:150 1:150,A:1953593854;C:1846045443;G:1843347399;T:1915927680;N:145424,150,150,,,1953593854,1846045443,1843347399,1915927680,145424,SRX10064372,SRS8226450,SRA1194342,Huazhong Agricultural University|College of Animal Science and Technology,Huazhong Agricultural University,2,0.96353,0.96407,0.03092,0.03073,0.82142,0.82264,0.56714,0.5657,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,nebnext,bulk,unknown,unknown,,China,2021-02-10,Adult,Adult,Muscle,Muscular System
66710,SRR16378894,SRX12656337,SRS10609555,SRP341786,PRJNA772011,Spatial transcriptome of zebrafish trunk section,PRJNA772011,Other,Spatial transcriptome sequencing data from sections of adult and larvae zebrafish trunk. Aiming to delineate the distribution of fast and slow muscle fibers in zebrafish by transcriptomic patterns and the regulation of muscle growth.,,,,,zebrafish larvae,,strain:Riken wide type|age:1 month|sex:not applicable|tissue:muscle|birth location:Tokyo Japan|collection date:2020 08 20|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: larvae muscle,zebrafish larva,zebrafish larva,Visium spatial transcriptomics,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP341786,,,zebra_young_S1_L004_R1_001.fastq zebra_young_S1_L004_R2_001.fastq,fastq fastq,2755287020.0,23349890.0,zebra young S1 L004 R1 001.fastq,0:28 1:90,A:775062912;C:621131964;G:654720744;T:704362634;N:8766,28,90,,,775062912,621131964,654720744,704362634,8766,SRX12656337,SRS10609555,SRA1312274,The University of Tokyo|Graduate School of Agriculture and Life Science,The University of Tokyo,2,0.00167,0.91629,0.0005,0.02744,0.99707,0.85989,0.57777,0.51307,28,90,T,B,sc-like readlen,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Japan,2021-10-17,Juvenile,Juvenile,Muscle,Muscular System
66711,SRR16378895,SRX12656336,SRS10609554,SRP341786,PRJNA772011,Spatial transcriptome of zebrafish trunk section,PRJNA772011,Other,Spatial transcriptome sequencing data from sections of adult and larvae zebrafish trunk. Aiming to delineate the distribution of fast and slow muscle fibers in zebrafish by transcriptomic patterns and the regulation of muscle growth.,,,,,zebrafish aged,,strain:Riken wide type|age:8 month|sex:male|tissue:muscle|birth location:Tokyo Japan|collection date:2020 08 20|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio: adult male muscle,zebrafish aged,zebrafish aged,Visium spatial transcriptomics,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP341786,,,zebra_aged_S2_L004_R1_001.fastq zebra_aged_S2_L004_R2_001.fastq,fastq fastq,21508079126.0,182271857.0,zebra aged S2 L004 R1 001.fastq,0:28 1:90,A:6446039227;C:4838400089;G:4527284151;T:5696286768;N:68891,28,90,,,6446039227,4838400089,4527284151,5696286768,68891,SRX12656336,SRS10609554,SRA1312274,The University of Tokyo|Graduate School of Agriculture and Life Science,The University of Tokyo,2,0.00207,0.89769,0.00073,0.03196,0.99736,0.89688,0.49411,0.40762,28,90,T,B,sc-like readlen,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,Japan,2021-10-17,Adult,Adult,Muscle,Muscular System