rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 34100,SRR31179089,SRX26561802,SRS23067260,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L21,L1EIC0700904 T L2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:9|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L21,L21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700904-T_L2.R1.raw.fastq.gz L1EIC0700904-T_L2.R2.raw.fastq.gz,fastq fastq,6755197306.0,22368203.0,L1EIC0700904 T L2.R1.raw.fastq.gz,0:151 1:151,A:1778527472;C:1586407415;G:1611223994;T:1770639781;N:8398644,151,151,,,1778527472,1586407415,1611223994,1770639781,8398644,SRX26561802,SRS23067260,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34101,SRR31179090,SRX26561801,SRS23067261,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L11,L1EIC0700903 T L1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:7|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L11,L11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700903-T_L1.R1.raw.fastq.gz L1EIC0700903-T_L1.R2.raw.fastq.gz,fastq fastq,7262619518.0,24048409.0,L1EIC0700903 T L1.R1.raw.fastq.gz,0:151 1:151,A:1897564712;C:1719515913;G:1744510723;T:1891980402;N:9047768,151,151,,,1897564712,1719515913,1744510723,1891980402,9047768,SRX26561801,SRS23067261,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34102,SRR31179091,SRX26561800,SRS23067257,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C31,L1EIC0700902 T C3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C31,C31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700902-T_C3.R1.raw.fastq.gz L1EIC0700902-T_C3.R2.raw.fastq.gz,fastq fastq,6986250560.0,23133280.0,L1EIC0700902 T C3.R1.raw.fastq.gz,0:151 1:151,A:1814714141;C:1667167814;G:1686637674;T:1809014055;N:8716876,151,151,,,1814714141,1667167814,1686637674,1809014055,8716876,SRX26561800,SRS23067257,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34103,SRR31179092,SRX26561799,SRS23067259,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C21,L1EIC0700901 T C2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C21,C21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700901-T_C2.R1.raw.fastq.gz L1EIC0700901-T_C2.R2.raw.fastq.gz,fastq fastq,7084353146.0,23458123.0,L1EIC0700901 T C2.R1.raw.fastq.gz,0:151 1:151,A:1860686893;C:1670094870;G:1691858523;T:1852823738;N:8889122,151,151,,,1860686893,1670094870,1691858523,1852823738,8889122,SRX26561799,SRS23067259,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34104,SRR31179093,SRX26561798,SRS23067255,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S31,L1EIC0700908 T S3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:17|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S31,S31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700908-T_S3.R1.raw.fastq.gz L1EIC0700908-T_S3.R2.raw.fastq.gz,fastq fastq,6992611888.0,23154344.0,L1EIC0700908 T S3.R1.raw.fastq.gz,0:151 1:151,A:1891265867;C:1594515809;G:1615494569;T:1882648469;N:8687174,151,151,,,1891265867,1594515809,1615494569,1882648469,8687174,SRX26561798,SRS23067255,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34105,SRR31179094,SRX26561797,SRS23067258,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S21,L1EIC0700907 T S2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:15|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S21,S21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700907-T_S2.R1.raw.fastq.gz L1EIC0700907-T_S2.R2.raw.fastq.gz,fastq fastq,6223201958.0,20606629.0,L1EIC0700907 T S2.R1.raw.fastq.gz,0:151 1:151,A:1635455481;C:1467707544;G:1484789988;T:1627505187;N:7743758,151,151,,,1635455481,1467707544,1484789988,1627505187,7743758,SRX26561797,SRS23067258,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34106,SRR31179095,SRX26561796,SRS23067256,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S11,L1EIC0700906 T S1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:13|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S11,S11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700906-T_S1.R1.raw.fastq.gz L1EIC0700906-T_S1.R2.raw.fastq.gz,fastq fastq,6882679660.0,22790330.0,L1EIC0700906 T S1.R1.raw.fastq.gz,0:151 1:151,A:1805328115;C:1625761692;G:1646060059;T:1796837143;N:8692651,151,151,,,1805328115,1625761692,1646060059,1796837143,8692651,SRX26561796,SRS23067256,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34107,SRR31179096,SRX26561795,SRS23067254,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L31,L1EIC0700905 T L3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:11|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L31,L31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700905-T_L3.R1.raw.fastq.gz L1EIC0700905-T_L3.R2.raw.fastq.gz,fastq fastq,6901039146.0,22851123.0,L1EIC0700905 T L3.R1.raw.fastq.gz,0:151 1:151,A:1796093025;C:1641065561;G:1664159837;T:1791078184;N:8642539,151,151,,,1796093025,1641065561,1664159837,1791078184,8642539,SRX26561795,SRS23067254,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34108,SRR31179097,SRX26561794,SRS23067253,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C11,L1EIC0700900 T C1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C11,C11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700900-T_C1.R1.raw.fastq.gz L1EIC0700900-T_C1.R2.raw.fastq.gz,fastq fastq,10565913034.0,34986467.0,L1EIC0700900 T C1.R1.raw.fastq.gz,0:151 1:151,A:2737543425;C:2523674862;G:2563177427;T:2728317948;N:13199372,151,151,,,2737543425,2523674862,2563177427,2728317948,13199372,SRX26561794,SRS23067253,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 66831,SRR16674680,SRX12875367,SRS10818487,SRP343978,PRJNA776712,RNA seq analysis of nde1 mutant zebrafish,PRJNA776712,Other,We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.,,,,,brain nde1KO,,strain:nde1KO|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of nde1 ko Danio rerio brain,B8,B8,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP343978,,,B8.R1.fastq.gz B8.R2.fastq.gz,fastq fastq,6730442668.0,22286234.0,B8.R1.fastq.gz,0:151 1:151,A:1861252434;C:1503025278;G:1520846977;T:1845259260;N:58719,151,151,,,1861252434,1503025278,1520846977,1845259260,58719,SRX12875367,SRS10818487,,,Children's Hospital of Fudan University,2,0.94017,0.93241,0.13042,0.12914,0.68958,0.69132,0.48508,0.48284,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2021-11-01,Juvenile,Juvenile,Brain,Nervous System 66832,SRR16674681,SRX12875366,SRS10818487,SRP343978,PRJNA776712,RNA seq analysis of nde1 mutant zebrafish,PRJNA776712,Other,We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.,,,,,brain nde1KO,,strain:nde1KO|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of nde1 ko Danio rerio brain,B5,B5,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP343978,,,B5.R1.fastq.gz B5.R2.fastq.gz,fastq fastq,7110747040.0,23545520.0,B5.R1.fastq.gz,0:151 1:151,A:1977355863;C:1580608625;G:1601936422;T:1950785340;N:60790,151,151,,,1977355863,1580608625,1601936422,1950785340,60790,SRX12875366,SRS10818487,,,Children's Hospital of Fudan University,2,0.93839,0.92891,0.1351,0.13386,0.69175,0.69424,0.49143,0.49249,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2021-11-01,Juvenile,Juvenile,Brain,Nervous System 66833,SRR16674682,SRX12875365,SRS10818487,SRP343978,PRJNA776712,RNA seq analysis of nde1 mutant zebrafish,PRJNA776712,Other,We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.,,,,,brain nde1KO,,strain:nde1KO|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of nde1 ko Danio rerio brain,B2,B2,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP343978,,,B2.R1.fastq.gz B2.R2.fastq.gz,fastq fastq,8547028538.0,28301419.0,B2.R1.fastq.gz,0:151 1:151,A:2378598350;C:1891330158;G:1921569124;T:2355455648;N:75258,151,151,,,2378598350,1891330158,1921569124,2355455648,75258,SRX12875365,SRS10818487,,,Children's Hospital of Fudan University,2,0.94029,0.92534,0.13616,0.13373,0.68949,0.69219,0.47948,0.48398,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2021-11-01,Juvenile,Juvenile,Brain,Nervous System 66834,SRR16674683,SRX12875364,SRS10818488,SRP343978,PRJNA776712,RNA seq analysis of nde1 mutant zebrafish,PRJNA776712,Other,We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.,,,,,brain WT,,strain:TU|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio brain,B7,B7,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP343978,,,B7.R1.fastq.gz B7.R2.fastq.gz,fastq fastq,6685388496.0,22137048.0,B7.R1.fastq.gz,0:151 1:151,A:1860264075;C:1483831512;G:1503216220;T:1838014556;N:62133,151,151,,,1860264075,1483831512,1503216220,1838014556,62133,SRX12875364,SRS10818488,,,Children's Hospital of Fudan University,2,0.94254,0.93341,0.13834,0.13689,0.69355,0.69755,0.49201,0.49217,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2021-11-01,Juvenile,Juvenile,Brain,Nervous System 66835,SRR16674684,SRX12875363,SRS10818488,SRP343978,PRJNA776712,RNA seq analysis of nde1 mutant zebrafish,PRJNA776712,Other,We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.,,,,,brain WT,,strain:TU|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio brain,B4,B4,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP343978,,,B4.R1.fastq.gz B4.R2.fastq.gz,fastq fastq,7546711220.0,24989110.0,B4.R1.fastq.gz,0:151 1:151,A:2099092660;C:1670910951;G:1699960602;T:2076680479;N:66528,151,151,,,2099092660,1670910951,1699960602,2076680479,66528,SRX12875363,SRS10818488,,,Children's Hospital of Fudan University,2,0.94254,0.92745,0.13347,0.13114,0.69225,0.69424,0.48413,0.49124,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2021-11-01,Juvenile,Juvenile,Brain,Nervous System 66836,SRR16674685,SRX12875362,SRS10818488,SRP343978,PRJNA776712,RNA seq analysis of nde1 mutant zebrafish,PRJNA776712,Other,We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.,,,,,brain WT,,strain:TU|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio brain,B1,B1,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP343978,,,B1.R1.fastq.gz B1.R2.fastq.gz,fastq fastq,6758464342.0,22379021.0,B1.R1.fastq.gz,0:151 1:151,A:1881676275;C:1495234309;G:1519420774;T:1862074223;N:58761,151,151,,,1881676275,1495234309,1519420774,1862074223,58761,SRX12875362,SRS10818488,,,Children's Hospital of Fudan University,2,0.94263,0.92421,0.13676,0.13324,0.69505,0.697,0.48389,0.48239,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2021-11-02,Juvenile,Juvenile,Brain,Nervous System 68554,SRR18010263,SRX14164590,SRS11988750,SRP359660,PRJNA806676,Transcriptome analysis of nomo1 homologous deficiency zebrafish,PRJNA806676,Other,This analysis revealed transcriptome level changes of brain of nomo1 homologous deficiency zebrafish.,,,,,nomo1,,strain:nomo / |dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rario: nomo1,nomo,nomo,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP359660,,,NOMO_1.fq.gz NOMO_2.fq.gz,fastq fastq,7423945800.0,24746486.0,NOMO 1.fq.gz,0:150 1:150,A:2079187833;C:1643658691;G:1652867282;T:2048199003;N:32991,150,150,,,2079187833,1643658691,1652867282,2048199003,32991,SRX14164590,SRS11988750,,,Children's Hospital of Fudan University,2,0.93796,0.93625,0.16379,0.1632,0.69643,0.69842,0.48865,0.48976,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2022-02-13,Juvenile,Juvenile,Brain,Nervous System 68555,SRR18010264,SRX14164589,SRS11988749,SRP359660,PRJNA806676,Transcriptome analysis of nomo1 homologous deficiency zebrafish,PRJNA806676,Other,This analysis revealed transcriptome level changes of brain of nomo1 homologous deficiency zebrafish.,,,,,WT,,strain:tu|dev stage:2mpf|sex:male|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rario: TU,TU,TU,RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP359660,,,TU_1.fq.gz TU_2.fq.gz,fastq fastq,7981027200.0,26603424.0,TU 1.fq.gz,0:150 1:150,A:2246332345;C:1756444706;G:1767372264;T:2210842856;N:35029,150,150,,,2246332345,1756444706,1767372264,2210842856,35029,SRX14164589,SRS11988749,,,Children's Hospital of Fudan University,2,0.93375,0.93291,0.17081,0.17028,0.69755,0.69875,0.48942,0.49405,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,China,2022-02-13,Juvenile,Juvenile,Brain,Nervous System