rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 30716,SRR28342048,SRX23948605,SRS20750294,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag RESA CLIP input B3,3xflag RESA CLIP input B3 AGN003279,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002510|replicate ref:AGN003279|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3737 input|replicate label short:RESA CLIP Upf1 #3737 input B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag RESA HITS CLIP input B3,AGR004059,AGR004059,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004059_R1.fastq AGR004059_R2.fastq,fastq fastq,15446715026.0,51148063.0,AGR004059 R1.fastq.zst,0:151 1:151,A:4298384942;C:3080575022;G:4004069877;T:4063619821;N:65364,151,151,,,4298384942,3080575022,4004069877,4063619821,65364,SRX23948605,SRS20750294,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30717,SRR28342039,SRX23948614,SRS20750302,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 R843C RESA HITS CLIP B1,3xflag upf1 R843C RESA HITS CLIP B1 AGN003273,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002507|replicate ref:AGN003273|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3735 IP|replicate label short:RESA CLIP Upf1 #3735 IP B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 R843C RESA HITS CLIP B1,AGR004053,AGR004053,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004053_R1.fastq AGR004053_R2.fastq,fastq fastq,10545264992.0,34918096.0,AGR004053 R1.fastq.zst,0:151 1:151,A:2943441620;C:2155828506;G:2709854276;T:2736095568;N:45022,151,151,,,2943441620,2155828506,2709854276,2736095568,45022,SRX23948614,SRS20750302,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30718,SRR28342040,SRX23948613,SRS20750303,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 C126S RESA HITS CLIP B2,3xflag upf1 C126S RESA HITS CLIP B2 AGN003282,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002511|replicate ref:AGN003282|replicate order:2|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3737 IP|replicate label short:RESA CLIP Upf1 #3737 IP B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 C126S RESA HITS CLIP B2,AGR004062,AGR004062,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004062_R1.fastq AGR004062_R2.fastq,fastq fastq,11134300590.0,36868545.0,AGR004062 R1.fastq.zst,0:151 1:151,A:3063023630;C:2386509106;G:2925940275;T:2758782993;N:44586,151,151,,,3063023630,2386509106,2925940275,2758782993,44586,SRX23948613,SRS20750303,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30719,SRR28342041,SRX23948612,SRS20750301,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 C126S RESA HITS CLIP B1,3xflag upf1 C126S RESA HITS CLIP B1 AGN003281,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002511|replicate ref:AGN003281|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3737 IP|replicate label short:RESA CLIP Upf1 #3737 IP B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 C126S RESA HITS CLIP B1,AGR004061,AGR004061,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004061_R1.fastq AGR004061_R2.fastq,fastq fastq,13368435586.0,44266343.0,AGR004061 R1.fastq.zst,0:151 1:151,A:3603822055;C:2659540495;G:3591989409;T:3513026539;N:57088,151,151,,,3603822055,2659540495,3591989409,3513026539,57088,SRX23948612,SRS20750301,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30720,SRR28342042,SRX23948611,SRS20750300,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 G495R/G497E RESA HITS CLIP B2,3xflag upf1 G495R/G497E RESA HITS CLIP B2 AGN003278,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002509|replicate ref:AGN003278|replicate order:2|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3736 IP|replicate label short:RESA CLIP Upf1 #3736 IP B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 G495R/G497E RESA HITS CLIP B2,AGR004058,AGR004058,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004058_R1.fastq AGR004058_R2.fastq,fastq fastq,13750586084.0,45531742.0,AGR004058 R1.fastq.zst,0:151 1:151,A:3775460380;C:2748834924;G:3672092546;T:3554141983;N:56251,151,151,,,3775460380,2748834924,3672092546,3554141983,56251,SRX23948611,SRS20750300,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30721,SRR28342043,SRX23948610,SRS20750299,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 G495R/G497E RESA HITS CLIP B1,3xflag upf1 G495R/G497E RESA HITS CLIP B1 AGN003277,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002509|replicate ref:AGN003277|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3736 IP|replicate label short:RESA CLIP Upf1 #3736 IP B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 G495R/G497E RESA HITS CLIP B1,AGR004057,AGR004057,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004057_R1.fastq AGR004057_R2.fastq,fastq fastq,10708529212.0,35458706.0,AGR004057 R1.fastq.zst,0:151 1:151,A:2983511099;C:2231542625;G:2842811089;T:2650619142;N:45257,151,151,,,2983511099,2231542625,2842811089,2650619142,45257,SRX23948610,SRS20750299,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30722,SRR28342044,SRX23948609,SRS20750297,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag gfp RESA HITS CLIP B1,3xflag gfp RESA HITS CLIP B1 AGN002579,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 01 05|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS001970|replicate ref:AGN002579|replicate order:1|project label long:3x flag upf1 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper. Control is 3x flag gfp|project label short:3xflag upf1 RESA HITS CLIP|sample label short:gfp CLIP|replicate label short:gfp CLIP B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag gfp RESA HITS CLIP B1,AGR003308,AGR003308,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003308_R1.fastq AGR003308_R2.fastq,fastq fastq,507167460.0,2510730.0,AGR003308 R1.fastq.zst,0:101 1:101,A:156207937;C:97169427;G:111291367;T:142479104;N:19625,101,101,,,156207937,97169427,111291367,142479104,19625,SRX23948609,SRS20750297,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30723,SRR28342045,SRX23948608,SRS20750298,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag RESA HITS CLIP input B4,3xflag RESA CLIP input B4 AGN003267,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002504|replicate ref:AGN003267|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3650 input|replicate label short:RESA CLIP Upf1 #3650 input B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag RESA HITS CLIP input B4,AGR004047,AGR004047,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004047_R2.fastq AGR004047_R1.fastq,fastq fastq,19396379142.0,64226421.0,AGR004047 R1.fastq.zst,0:151 1:151,A:5606633601;C:3872715770;G:4910603410;T:5006345083;N:81278,151,151,,,5606633601,3872715770,4910603410,5006345083,81278,SRX23948608,SRS20750298,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30724,SRR28342046,SRX23948607,SRS20750295,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf3b RESA HITS CLIP B2,3xflag upf3b RESA HITS CLIP B2 AGN002796,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002161|replicate ref:AGN002796|replicate order:2|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf3b pulldown|replicate label short:Upf3b pulldown B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf3b RESA HITS CLIP B2,AGR003554,AGR003554,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003554_R1.fastq AGR003554_R2.fastq,fastq fastq,9047261244.0,44788422.0,AGR003554 R1.fastq.zst,0:101 1:101,A:2711585737;C:1825740983;G:2076537283;T:2433050799;N:346442,101,101,,,2711585737,1825740983,2076537283,2433050799,346442,SRX23948607,SRS20750295,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30725,SRR28342047,SRX23948606,SRS20750296,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf3b RESA HITS CLIP B1,3xflag upf3b RESA HITS CLIP B1 AGN002795,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002161|replicate ref:AGN002795|replicate order:1|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf3b pulldown|replicate label short:Upf3b pulldown B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf3b RESA HITS CLIP B1,AGR003549,AGR003549,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003549_R1.fastq AGR003549_R2.fastq,fastq fastq,9617196770.0,47609885.0,AGR003549 R1.fastq.zst,0:101 1:101,A:2856263963;C:1963091501;G:2218118010;T:2579364306;N:358990,101,101,,,2856263963,1963091501,2218118010,2579364306,358990,SRX23948606,SRS20750296,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30726,SRR28342049,SRX23948604,SRS20750292,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf3a RESA HITS CLIP B2,3xflag upf3a RESA HITS CLIP B2 AGN002792,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002159|replicate ref:AGN002792|replicate order:2|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf3a pulldown|replicate label short:Upf3a pulldown B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf3a RESA HITS CLIP B2,AGR003566,AGR003566,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003566_R1.fastq AGR003566_R2.fastq,fastq fastq,50318544410.0,249101705.0,AGR003566 R1.fastq.zst,0:101 1:101,A:14930547705;C:10295739682;G:11624332741;T:13466693890;N:1230392,101,101,,,14930547705,10295739682,11624332741,13466693890,1230392,SRX23948604,SRS20750292,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30727,SRR28342050,SRX23948603,SRS20750293,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf3a RESA HITS CLIP B1,3xflag upf3a RESA HITS CLIP B1 AGN002791,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002159|replicate ref:AGN002791|replicate order:1|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf3a pulldown|replicate label short:Upf3a pulldown B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf3a RESA HITS CLIP B1,AGR003545,AGR003545,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003545_R1.fastq AGR003545_R2.fastq,fastq fastq,10770959564.0,53321582.0,AGR003545 R1.fastq.zst,0:101 1:101,A:3207646854;C:2186852059;G:2481889724;T:2894165865;N:405062,101,101,,,3207646854,2186852059,2481889724,2894165865,405062,SRX23948603,SRS20750293,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30728,SRR28342051,SRX23948602,SRS20750291,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf2 RESA HITS CLIP B2,3xflag upf2 RESA HITS CLIP B2 AGN002788,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002157|replicate ref:AGN002788|replicate order:2|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf2 pulldown|replicate label short:Upf2 pulldown B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf2 RESA HITS CLIP B2,AGR003541,AGR003541,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003541_R1.fastq AGR003541_R2.fastq,fastq fastq,9471117440.0,46886720.0,AGR003541 R1.fastq.zst,0:101 1:101,A:2852420143;C:1898246719;G:2136843599;T:2583254674;N:352305,101,101,,,2852420143,1898246719,2136843599,2583254674,352305,SRX23948602,SRS20750291,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30729,SRR28342052,SRX23948601,SRS20750290,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf2 RESA HITS CLIP B1,3xflag upf2 RESA HITS CLIP B1 AGN002787,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002157|replicate ref:AGN002787|replicate order:1|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf2 pulldown|replicate label short:Upf2 pulldown B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf2 RESA HITS CLIP B1,AGR003542,AGR003542,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003542_R1.fastq AGR003542_R2.fastq,fastq fastq,10845546044.0,53690822.0,AGR003542 R1.fastq.zst,0:101 1:101,A:3277705832;C:2154122837;G:2449408891;T:2963913264;N:395220,101,101,,,3277705832,2154122837,2449408891,2963913264,395220,SRX23948601,SRS20750290,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30730,SRR28342053,SRX23948600,SRS20750289,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 RESA HITS CLIP B5,3xflag upf1 RESA HITS CLIP B5 AGN003270,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002505|replicate ref:AGN003270|replicate order:2|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3650 IP|replicate label short:RESA CLIP Upf1 #3650 IP B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 RESA HITS CLIP B5,AGR004050,AGR004050,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004050_R1.fastq AGR004050_R2.fastq,fastq fastq,11823214534.0,39149717.0,AGR004050 R1.fastq.zst,0:151 1:151,A:3184473505;C:2558650081;G:3236214151;T:2843828317;N:48480,151,151,,,3184473505,2558650081,3236214151,2843828317,48480,SRX23948600,SRS20750289,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30731,SRR28342054,SRX23948599,SRS20750288,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 RESA HITS CLIP B4,3xflag upf1 RESA HITS CLIP B4 AGN003269,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002505|replicate ref:AGN003269|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3650 IP|replicate label short:RESA CLIP Upf1 #3650 IP B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 RESA HITS CLIP B4,AGR004049,AGR004049,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004049_R1.fastq AGR004049_R2.fastq,fastq fastq,14371221754.0,47586827.0,AGR004049 R1.fastq.zst,0:151 1:151,A:3983698498;C:2912453835;G:3805806498;T:3669203887;N:59036,151,151,,,3983698498,2912453835,3805806498,3669203887,59036,SRX23948599,SRS20750288,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30732,SRR28342055,SRX23948598,SRS20750287,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 RESA HITS CLIP B3,3xflag upf1 RESA HITS CLIP B3 AGN002798,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002154|replicate ref:AGN002798|replicate order:2|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf1 pulldown|replicate label short:Upf1 pulldown B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 RESA HITS CLIP B3,AGR003555,AGR003555,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003555_R1.fastq AGR003555_R2.fastq,fastq fastq,13605076932.0,67351866.0,AGR003555 R1.fastq.zst,0:101 1:101,A:3996372048;C:2823464384;G:3156030119;T:3628752419;N:457962,101,101,,,3996372048,2823464384,3156030119,3628752419,457962,SRX23948598,SRS20750287,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30733,SRR28342056,SRX23948597,SRS20750283,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 RESA HITS CLIP B2,3xflag upf1 RESA HITS CLIP B2 AGN002784,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 08 19|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002154|replicate ref:AGN002784|replicate order:1|project label long:3x flag upf1 2 3a 3b RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:3xflag upf1 RESA HITS CLIP|sample label short:Upf1 pulldown|replicate label short:Upf1 pulldown B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 RESA HITS CLIP B2,AGR003552,AGR003552,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003552_R1.fastq AGR003552_R2.fastq,fastq fastq,10762870878.0,53281539.0,AGR003552 R1.fastq.zst,0:101 1:101,A:3170047840;C:2223795927;G:2504911576;T:2863700088;N:415447,101,101,,,3170047840,2223795927,2504911576,2863700088,415447,SRX23948597,SRS20750283,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30734,SRR28342057,SRX23948596,SRS20750286,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 RESA HITS CLIP B1,3xflag upf1 RESA HITS CLIP B1 AGN002577,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2021 01 05|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS001968|replicate ref:AGN002577|replicate order:1|project label long:3x flag upf1 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper. Control is 3x flag gfp|project label short:3xflag upf1 RESA HITS CLIP|sample label short:upf1 CLIP|replicate label short:upf1 CLIP B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 RESA HITS CLIP B1,AGR003306,AGR003306,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR003306_R1.fastq AGR003306_R2.fastq,fastq fastq,529433718.0,2620959.0,AGR003306 R1.fastq.zst,0:101 1:101,A:157881697;C:106579975;G:122214915;T:142736640;N:20491,101,101,,,157881697,106579975,122214915,142736640,20491,SRX23948596,SRS20750286,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30735,SRR28342058,SRX23948595,SRS20750284,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag upf1 R843C RESA HITS CLIP B2,3xflag upf1 R843C RESA HITS CLIP B2 AGN003274,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002507|replicate ref:AGN003274|replicate order:2|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3735 IP|replicate label short:RESA CLIP Upf1 #3735 IP B2|BioSampleModel:Model organism or animal,,,,,,,,,3xflag upf1 R843C RESA HITS CLIP B2,AGR004054,AGR004054,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004054_R1.fastq AGR004054_R2.fastq,fastq fastq,12067359790.0,39958145.0,AGR004054 R1.fastq.zst,0:151 1:151,A:3301899297;C:2532414363;G:3161463027;T:3071532640;N:50463,151,151,,,3301899297,2532414363,3161463027,3071532640,50463,SRX23948595,SRS20750284,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30736,SRR28342059,SRX23948594,SRS20750282,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag RESA CLIP input B2,3xflag RESA CLIP input B2 AGN003275,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002508|replicate ref:AGN003275|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3736 input|replicate label short:RESA CLIP Upf1 #3736 input B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag RESA HITS CLIP input B2,AGR004055,AGR004055,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004055_R1.fastq AGR004055_R2.fastq,fastq fastq,13295917534.0,44026217.0,AGR004055 R1.fastq.zst,0:151 1:151,A:3866188367;C:2751508227;G:3344357660;T:3333805406;N:57874,151,151,,,3866188367,2751508227,3344357660,3333805406,57874,SRX23948594,SRS20750282,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 30737,SRR28342060,SRX23948593,SRS20750285,SRP495203,PRJNA1087701,UPF1 regulates mRNA stability by sensing poorly translated coding sequences HITS CLIP.,PRJNA1087701,Other,Post transcriptional mRNA regulation shapes gene expression yet how cis elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that strength of translation initiation uORF content codon optimality AU rich elements microRNA binding sites and ORF length function combinatorially to regulate mRNA stability. Machine learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs which are associated with higher decay rate including mRNAs with uORFs and those with exposed ORFs post stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated such as mRNAs with long ORFs ORF like three primeUTRs and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an EJC independent NMD pathway that we term ORF Mediated Decay OMD.,,,,3xflag RESA CLIP input B1,3xflag RESA CLIP input B1 AGN003271,,strain:TU/AB|age:3.5 hpf|dev stage:1k cell|collection date:2022 10 04|geo loc name:USA|sex:pooled male and female|tissue:embryo|genotype:wt|strain maternal:wt|strain paternal:wt|molecule:mRNA|selection:flag bead PD post crosslinking|sample ref:AGS002506|replicate ref:AGN003271|replicate order:1|project label long:3x flag upf1 mutants plasmids 3735 3736 3737 3650 RESA HITS CLIP using V.Yartseva's library. Followed protocol in paper|project label short:upf1 mutant RESA HITS CLIP|sample label short:RESA CLIP Upf1 #3735 input|replicate label short:RESA CLIP Upf1 #3735 input B1|BioSampleModel:Model organism or animal,,,,,,,,,3xflag RESA HITS CLIP input B1,AGR004051,AGR004051,PCR from library specific RT,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP495203,,,AGR004051_R1.fastq AGR004051_R2.fastq,fastq fastq,14891006336.0,49307968.0,AGR004051 R1.fastq.zst,0:151 1:151,A:4241333172;C:3027167277;G:3764089225;T:3858355544;N:61118,151,151,,,4241333172,3027167277,3764089225,3858355544,61118,SRX23948593,SRS20750285,SRA1824033,Yale University|Genetics,Yale University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,United States,2024-03-14,Blastula,Embryo,Embryo Imprecise,All anatomical structures 31884,SRR28747851,SRX24313483,SRS21075233,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish control sample3,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish control 3,Ctrl 3,Ctrl 3,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,Ctrl-3_S26_L004_R2_001.fastq.gz Ctrl-3_S26_L004_R1_001.fastq.gz,fastq fastq,6658139400.0,22193798.0,Ctrl 3 S26 L004 R1 001.fastq.gz,0:150 1:150,A:1953050910;C:1380426193;G:1413459206;T:1911166654;N:36437,150,150,,,1953050910,1380426193,1413459206,1911166654,36437,SRX24313483,SRS21075233,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.94694,0.94695,0.14305,0.14206,0.70412,0.70473,0.59878,0.59922,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures 31885,SRR28747852,SRX24313482,SRS21075231,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish control sample2,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish control 2,Ctrl 2,Ctrl 2,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,Ctrl-2_S25_L004_R1_001.fastq.gz Ctrl-2_S25_L004_R2_001.fastq.gz,fastq fastq,7515161100.0,25050537.0,Ctrl 2 S25 L004 R1 001.fastq.gz,0:150 1:150,A:2218032458;C:1545198589;G:1580900913;T:2170988635;N:40505,150,150,,,2218032458,1545198589,1580900913,2170988635,40505,SRX24313482,SRS21075231,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.94205,0.94032,0.15138,0.15085,0.69578,0.69645,0.5641,0.56481,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures 31886,SRR28747853,SRX24313481,SRS21075234,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish control sample1,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish control 1,Ctrl 1,Ctrl 1,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,Ctrl-1_S24_L004_R1_001.fastq.gz Ctrl-1_S24_L004_R2_001.fastq.gz,fastq fastq,9747041100.0,32490137.0,Ctrl 1 S24 L004 R1 001.fastq.gz,0:150 1:150,A:2863031605;C:2014131410;G:2067943208;T:2801881561;N:53316,150,150,,,2863031605,2014131410,2067943208,2801881561,53316,SRX24313481,SRS21075234,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.94378,0.94419,0.14935,0.14934,0.70749,0.7069,0.60161,0.59912,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures 31887,SRR28747854,SRX24313480,SRS21075232,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish 4 octyl itaconate sample3,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish 4 octyl itaconate 3,4OI 3,4OI 3,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,4OI-3_S23_L004_R1_001.fastq.gz 4OI-3_S23_L004_R2_001.fastq.gz,fastq fastq,8273990400.0,27579968.0,4OI 3 S23 L004 R1 001.fastq.gz,0:150 1:150,A:2162937415;C:1975194532;G:2012089890;T:2123723196;N:45367,150,150,,,2162937415,1975194532,2012089890,2123723196,45367,SRX24313480,SRS21075232,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.96535,0.96542,0.03083,0.03097,0.71279,0.71295,0.48276,0.47927,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures 31888,SRR28747855,SRX24313479,SRS21075230,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish 4 octyl itaconate sample2,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish 4 octyl itaconate 2,4OI 2,4OI 2,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,4OI-2_S28_L003_R1_001.fastq.gz 4OI-2_S28_L003_R2_001.fastq.gz,fastq fastq,6579714300.0,21932381.0,4OI 2 S28 L003 R1 001.fastq.gz,0:150 1:150,A:1710345718;C:1580260893;G:1608081826;T:1680921918;N:103945,150,150,,,1710345718,1580260893,1608081826,1680921918,103945,SRX24313479,SRS21075230,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.96511,0.96418,0.03843,0.0384,0.70179,0.7027,0.49174,0.5066,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures 31889,SRR28747856,SRX24313478,SRS21075229,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish 4 octyl itaconate sample1,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish 4 octyl itaconate 1,4OI 1,4OI 1,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,4OI-1_S27_L003_R1_001.fastq.gz 4OI-1_S27_L003_R2_001.fastq.gz,fastq fastq,7099570500.0,23665235.0,4OI 1 S27 L003 R1 001.fastq.gz,0:150 1:150,A:1858012411;C:1693592911;G:1723374425;T:1824476953;N:113800,150,150,,,1858012411,1693592911,1723374425,1824476953,113800,SRX24313478,SRS21075229,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.96619,0.96559,0.04154,0.04152,0.70386,0.70412,0.48321,0.49372,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures 32617,SRR29366294,SRX24880743,SRS21589520,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,NPs4,,strain:TU|isolate:NPs4|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs4,NPs4,A total amount of 9 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0022_good_1.fq.gz Unknown_BO623-04T0022_good_2.fq.gz,fastq fastq,6748273836.0,22592809.0,Unknown BO623 04T0022 good 1.fq.gz,0:149.35 1:149.35,A:1774719919;C:1597377190;G:1614927098;T:1761071358;N:178271,149,149,,,1774719919,1597377190,1614927098,1761071358,178271,SRX24880743,SRS21589520,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32618,SRR29366295,SRX24880742,SRS21589518,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,NPs3,,strain:TU|isolate:NPs3|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs3,NPs3,A total amount of 8 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0021_good_1.fq.gz Unknown_BO623-04T0021_good_2.fq.gz,fastq fastq,6529485490.0,21847936.0,Unknown BO623 04T0021 good 1.fq.gz,0:149.43 1:149.43,A:1717039978;C:1547743896;G:1563982349;T:1700522682;N:196585,149,149,,,1717039978,1547743896,1563982349,1700522682,196585,SRX24880742,SRS21589518,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32619,SRR29366296,SRX24880741,SRS21589519,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,NPs2,,strain:TU|isolate:NPs2|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs2,NPs2,A total amount of 7 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0020_good_1.fq.gz Unknown_BO623-04T0020_good_2.fq.gz,fastq fastq,6699049910.0,22407080.0,Unknown BO623 04T0020 good 1.fq.gz,0:149.49 1:149.49,A:1761959579;C:1586799482;G:1603631340;T:1746520369;N:139140,149,149,,,1761959579,1586799482,1603631340,1746520369,139140,SRX24880741,SRS21589519,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32620,SRR29366297,SRX24880740,SRS21589517,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,NPs1,,strain:TU|isolate:NPs1|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs1,NPs1,A total amount of 6 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0019_good_1.fq.gz Unknown_BO623-04T0019_good_2.fq.gz,fastq fastq,6132468788.0,20516184.0,Unknown BO623 04T0019 good 1.fq.gz,0:149.45 1:149.45,A:1607332987;C:1458658424;G:1471957341;T:1594421337;N:98699,149,149,,,1607332987,1458658424,1471957341,1594421337,98699,SRX24880740,SRS21589517,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32621,SRR29366298,SRX24880739,SRS21589516,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,C6,,strain:TU|isolate:Control6|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C6,C6,A total amount of 5 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0018_good_1.fq.gz Unknown_BO623-04T0018_good_2.fq.gz,fastq fastq,5940082248.0,19857041.0,Unknown BO623 04T0018 good 1.fq.gz,0:149.57 1:149.57,A:1533707674;C:1435538751;G:1452812826;T:1517833025;N:189972,149,149,,,1533707674,1435538751,1452812826,1517833025,189972,SRX24880739,SRS21589516,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32622,SRR29366299,SRX24880738,SRS21589515,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,C5,,strain:TU|isolate:Control5|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C5,C5,A total amount of 4 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0017_good_1.fq.gz Unknown_BO623-04T0017_good_2.fq.gz,fastq fastq,6758002932.0,22599590.0,Unknown BO623 04T0017 good 1.fq.gz,0:149.52 1:149.52,A:1739766340;C:1637642157;G:1652002401;T:1728330255;N:261779,149,149,,,1739766340,1637642157,1652002401,1728330255,261779,SRX24880738,SRS21589515,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32623,SRR29366300,SRX24880737,SRS21589514,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,C4,,strain:TU|isolate:Control4|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C4,C4,A total amount of 3 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0016_good_1.fq.gz Unknown_BO623-04T0016_good_2.fq.gz,fastq fastq,6210972784.0,20767744.0,Unknown BO623 04T0016 good 1.fq.gz,0:149.53 1:149.53,A:1591917700;C:1506245368;G:1529628371;T:1583090947;N:90398,149,149,,,1591917700,1506245368,1529628371,1583090947,90398,SRX24880737,SRS21589514,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32624,SRR29366301,SRX24880736,SRS21589513,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,C3,,strain:TU|isolate:Control3|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C3,C3,A total amount of 2 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0015_good_1.fq.gz Unknown_BO623-04T0015_good_2.fq.gz,fastq fastq,6666249022.0,22284306.0,Unknown BO623 04T0015 good 1.fq.gz,0:149.57 1:149.57,A:1722337869;C:1610144787;G:1630507947;T:1703082771;N:175648,149,149,,,1722337869,1610144787,1630507947,1703082771,175648,SRX24880736,SRS21589513,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32625,SRR29366302,SRX24880735,SRS21589512,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,NPs6,,strain:TU|isolate:NPs6|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs6,NPs6,A total amount of11 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0024_good_1.fq.gz Unknown_BO623-04T0024_good_2.fq.gz,fastq fastq,6819262402.0,22797722.0,Unknown BO623 04T0024 good 1.fq.gz,0:149.56 1:149.56,A:1781861689;C:1629655448;G:1645382478;T:1762184452;N:178335,149,149,,,1781861689,1629655448,1645382478,1762184452,178335,SRX24880735,SRS21589512,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32626,SRR29366303,SRX24880734,SRS21589511,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,NPs5,,strain:TU|isolate:NPs5|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs5,NPs5,A total amount of10 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0023_good_1.fq.gz Unknown_BO623-04T0023_good_2.fq.gz,fastq fastq,6773730348.0,22673915.0,Unknown BO623 04T0023 good 1.fq.gz,0:149.37 1:149.37,A:1779182337;C:1607164031;G:1624141377;T:1763062617;N:179986,149,149,,,1779182337,1607164031,1624141377,1763062617,179986,SRX24880734,SRS21589511,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32627,SRR29366304,SRX24880733,SRS21589509,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,C2,,strain:TU|isolate:Control2|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C2,C2,A total amount of 1 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following manufacturers recommendations and index codes were added to attribute sequences to each sample. Briefly mRNA was purified from total RNA using poly T oligo attached magnetic beads.First strand cDNA was synthesized and second strand cDNA synthesis was subsequently performed. Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. post adenylation of 3 ends of DNA fragments NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. The library fragments were purified with AMPure XP system Beckman Coulter Beverly USA. Then 3 l USER Enzyme NEB USA was used with size selected adaptor ligated cDNA at 37C for 15 min followed by 5 min at 95C before PCR. Then PCR was performed with Phusion High Fidelity DNA polymerase Universal PCR primers and Index X Primer. At last PCR products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0014_good_1.fq.gz Unknown_BO623-04T0014_good_2.fq.gz,fastq fastq,6805354296.0,22755187.0,Unknown BO623 04T0014 good 1.fq.gz,0:149.53 1:149.53,A:1742825793;C:1651738009;G:1677448209;T:1733168084;N:174201,149,149,,,1742825793,1651738009,1677448209,1733168084,174201,SRX24880733,SRS21589509,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,nebnext,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 32628,SRR29366305,SRX24880732,SRS21589510,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages especially on visual system development.,,,,,C1,,strain:TU|isolate:Control1|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C1,C1,A total amount of 0 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co. Ltd. following x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0013_good_1.fq.gz Unknown_BO623-04T0013_good_2.fq.gz,fastq fastq,6546144006.0,21896126.0,Unknown BO623 04T0013 good 1.fq.gz,0:149.48 1:149.48,A:1688579059;C:1582023304;G:1598552166;T:1676633897;N:355580,149,149,,,1688579059,1582023304,1598552166,1676633897,355580,SRX24880732,SRS21589510,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures 33369,SRR30159204,SRX25626516,SRS22271512,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Mutant 2,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.8 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Mutant 2,Li lab 003 4,Li lab 003 4,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 6 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,7c166f592635e7a5f904d56dd661e1cc mut-2_1.fq.gz.gz 3adc1733ac4cb77beca49461cb17544b mut-2_2.fq.gz.gz,fastq fastq,5518961400.0,18396538.0,3adc1733ac4cb77beca49461cb17544b mut 2 2.fq.gz.gz,0:150 1:150,A:1469924277;C:1285547670;G:1307420673;T:1455990444;N:78336,150,150,,,1469924277,1285547670,1307420673,1455990444,78336,SRX25626516,SRS22271512,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.96085,0.95919,0.05548,0.05519,0.7207,0.72178,0.47759,0.47549,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined 33370,SRR30159205,SRX25626515,SRS22271511,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Mutant 1,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.7 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Mutant 1,Li lab 003 3,Li lab 003 3,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 5 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,39cb7947119cec5afac3df66c0ae0048 mut-1_1.fq.gz.gz 1bfc59902758bb1cbf8eb4549d3375fd mut-1_2.fq.gz.gz,fastq fastq,5947120500.0,19823735.0,1bfc59902758bb1cbf8eb4549d3375fd mut 1 2.fq.gz.gz,0:150 1:150,A:1567673549;C:1401761128;G:1423907629;T:1553701047;N:77147,150,150,,,1567673549,1401761128,1423907629,1553701047,77147,SRX25626515,SRS22271511,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.96303,0.96203,0.05003,0.04984,0.72271,0.72299,0.47608,0.47831,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined 33371,SRR30159206,SRX25626514,SRS22271510,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Wild type 2,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.6 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Wild type 2,Li lab 003 2,Li lab 003 2,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 4 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,4376e7007befe0cf23ffa7f9dd62512c sib-3_1.fq.gz.gz da4d46fd26ca22e90409489640659b1c sib-3_2.fq.gz.gz,fastq fastq,6113935200.0,20379784.0,4376e7007befe0cf23ffa7f9dd62512c sib 3 1.fq.gz.gz,0:150 1:150,A:1609711214;C:1443384557;G:1461871812;T:1598876167;N:91450,150,150,,,1609711214,1443384557,1461871812,1598876167,91450,SRX25626514,SRS22271510,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.95947,0.9591,0.04902,0.0492,0.71707,0.71796,0.46871,0.4604,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined 33372,SRR30159207,SRX25626513,SRS22271509,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Wild type 1,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.5 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Wild type 1,Li lab 003 1,Li lab 003 1,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 3 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,319b2e8b61305a8937eb903a7a20a2e7 sib-2_1.fq.gz.gz 4a84982431b5360126f279ceabf00548 sib-2_2.fq.gz.gz,fastq fastq,6351813000.0,21172710.0,319b2e8b61305a8937eb903a7a20a2e7 sib 2 1.fq.gz.gz,0:150 1:150,A:1674596701;C:1497102731;G:1525030471;T:1654985592;N:97505,150,150,,,1674596701,1497102731,1525030471,1654985592,97505,SRX25626513,SRS22271509,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.96469,0.96334,0.04679,0.04633,0.73119,0.73198,0.47359,0.47265,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined 33373,SRR30168925,SRX25635545,SRS22279934,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax Ti 3d3,Z Hi 3d3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 3|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z Hi 3d3,Z Hi 3d3,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_Hi_3d3_R2.fastq Z_Hi_3d3_R1.fastq,fastq fastq,6296371726.0,20848913.0,Z Hi 3d3 R1.fastq,0:151 1:151,A:1704155951;C:1439352121;G:1462544186;T:1690244568;N:74900,151,151,,,1704155951,1439352121,1462544186,1690244568,74900,SRX25635545,SRS22279934,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.9328,0.93327,0.07548,0.07488,0.71985,0.71928,0.5049,0.50889,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system 33374,SRR30168926,SRX25635544,SRS22279933,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax Ti 3d2,Z Hi 3d2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 2|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z Hi 3d2,Z Hi 3d2,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_Hi_3d2_R1.fastq Z_Hi_3d2_R2.fastq,fastq fastq,6530683862.0,21624781.0,Z Hi 3d2 R1.fastq,0:151 1:151,A:1754695891;C:1502355303;G:1526937743;T:1746614271;N:80654,151,151,,,1754695891,1502355303,1526937743,1746614271,80654,SRX25635544,SRS22279933,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.93139,0.93214,0.08116,0.08178,0.70981,0.70983,0.48395,0.48661,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system 33375,SRR30168927,SRX25635543,SRS22279932,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax Ti 3d1,Z Hi 3d1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 1|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z Hi 3d1,Z Hi 3d1,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_Hi_3d1_R1.fastq Z_Hi_3d1_R2.fastq,fastq fastq,6160626350.0,20399425.0,Z Hi 3d1 R1.fastq,0:151 1:151,A:1667594818;C:1407434381;G:1429290724;T:1656232741;N:73686,151,151,,,1667594818,1407434381,1429290724,1656232741,73686,SRX25635543,SRS22279932,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.9337,0.93249,0.08009,0.08009,0.71242,0.71338,0.47654,0.47528,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system 33376,SRR30168928,SRX25635542,SRS22279930,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax C 3d3,Z c 3d3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 3|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z c 3d3,Z c 3d3,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_C_3d3_R2.fastq Z_C_3d3_R1.fastq,fastq fastq,5810255010.0,19239255.0,Z C 3d3 R1.fastq,0:151 1:151,A:1564226440;C:1336263606;G:1355696622;T:1553998418;N:69924,151,151,,,1564226440,1336263606,1355696622,1553998418,69924,SRX25635542,SRS22279930,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.92958,0.92832,0.07821,0.07745,0.70463,0.70569,0.47036,0.47581,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system 33377,SRR30168929,SRX25635541,SRS22279931,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax C 3d2,Z c 3d2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 2|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z c 3d2,Z c 3d2,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_C_3d2_R2.fastq Z_C_3d2_R1.fastq,fastq fastq,6856714606.0,22704353.0,Z C 3d2 R1.fastq,0:151 1:151,A:1850156301;C:1573942247;G:1595025700;T:1837509085;N:81273,151,151,,,1850156301,1573942247,1595025700,1837509085,81273,SRX25635541,SRS22279931,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.92587,0.92539,0.08056,0.08087,0.70343,0.70423,0.48091,0.47768,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system 33378,SRR30168930,SRX25635540,SRS22279929,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax C 3d1,Z c 3d1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 1|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z c 3d1,Z c 3d1,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_C_3d1_R1.fastq Z_C_3d1_R2.fastq,fastq fastq,5915874074.0,19588987.0,Z C 3d1 R1.fastq,0:151 1:151,A:1601403264;C:1350219159;G:1374928971;T:1589252208;N:70472,151,151,,,1601403264,1350219159,1374928971,1589252208,70472,SRX25635540,SRS22279929,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.92552,0.92878,0.07906,0.07985,0.70264,0.70323,0.48016,0.48019,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system 33916,SRR30920839,SRX26323786,SRS22850830,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iv 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF iv 1,PF iv 1,PF iv 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iv_1_1.fq.gz PF_iv_1_2.fq.gz,fastq fastq,7070670900.0,23568903.0,PF iv 1 1.fq.gz,0:150 1:150,A:1943964885;C:1626486936;G:1603332965;T:1896802175;N:83939,150,150,,,1943964885,1626486936,1603332965,1896802175,83939,SRX26323786,SRS22850830,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33917,SRR30920840,SRX26323785,SRS22850828,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iii 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF iii 3,PF iii 3,PF iii 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iii_3_1.fq.gz PF_iii_3_2.fq.gz,fastq fastq,6934323600.0,23114412.0,PF iii 3 1.fq.gz,0:150 1:150,A:1813397404;C:1659011482;G:1680744429;T:1781143700;N:26585,150,150,,,1813397404,1659011482,1680744429,1781143700,26585,SRX26323785,SRS22850828,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33918,SRR30920841,SRX26323784,SRS22850835,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iii 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF iii 2,PF iii 2,PF iii 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iii_2_1.fq.gz PF_iii_2_2.fq.gz,fastq fastq,7255113000.0,24183710.0,PF iii 2 1.fq.gz,0:150 1:150,A:1877711956;C:1751268862;G:1779105498;T:1846998314;N:28370,150,150,,,1877711956,1751268862,1779105498,1846998314,28370,SRX26323784,SRS22850835,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33919,SRR30920842,SRX26323783,SRS22850829,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iii 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF iii 1,PF iii 1,PF iii 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iii_1_1.fq.gz PF_iii_1_2.fq.gz,fastq fastq,7367112000.0,24557040.0,PF iii 1 1.fq.gz,0:150 1:150,A:1943591568;C:1745588879;G:1774109048;T:1903793252;N:29253,150,150,,,1943591568,1745588879,1774109048,1903793252,29253,SRX26323783,SRS22850829,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33920,SRR30920843,SRX26323782,SRS22850827,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF ii 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF ii 3,PF ii 3,PF ii 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_ii_3_1.fq.gz PF_ii_3_2.fq.gz,fastq fastq,7076391300.0,23587971.0,PF ii 3 1.fq.gz,0:150 1:150,A:1894076667;C:1654017021;G:1661713202;T:1866530077;N:54333,150,150,,,1894076667,1654017021,1661713202,1866530077,54333,SRX26323782,SRS22850827,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33921,SRR30920844,SRX26323781,SRS22850824,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF ii 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF ii 2,PF ii 2,PF ii 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_ii_2_1.fq.gz PF_ii_2_2.fq.gz,fastq fastq,7019128200.0,23397094.0,PF ii 2 1.fq.gz,0:150 1:150,A:1864708472;C:1652262592;G:1662746794;T:1839356863;N:53479,150,150,,,1864708472,1652262592,1662746794,1839356863,53479,SRX26323781,SRS22850824,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33922,SRR30920845,SRX26323780,SRS22850826,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF ii 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF ii 1,PF ii 1,PF ii 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_ii_1_1.fq.gz PF_ii_1_2.fq.gz,fastq fastq,8013867900.0,26712893.0,PF ii 1 1.fq.gz,0:150 1:150,A:2115645121;C:1898389790;G:1909480370;T:2090291064;N:61555,150,150,,,2115645121,1898389790,1909480370,2090291064,61555,SRX26323780,SRS22850826,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33923,SRR30920846,SRX26323779,SRS22850825,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF i 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF i 3,PF i 3,PF i 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_i_3_1.fq.gz PF_i_3_2.fq.gz,fastq fastq,8319390000.0,27731300.0,PF i 3 1.fq.gz,0:150 1:150,A:2161188519;C:1997121516;G:2035390212;T:2125657588;N:32165,150,150,,,2161188519,1997121516,2035390212,2125657588,32165,SRX26323779,SRS22850825,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33924,SRR30920847,SRX26323778,SRS22850823,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iv 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF iv 3,PF iv 3,PF iv 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iv_3_1.fq.gz PF_iv_3_2.fq.gz,fastq fastq,7173257700.0,23910859.0,PF iv 3 1.fq.gz,0:150 1:150,A:1875724697;C:1713434205;G:1745363776;T:1838706880;N:28142,150,150,,,1875724697,1713434205,1745363776,1838706880,28142,SRX26323778,SRS22850823,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33925,SRR30920848,SRX26323777,SRS22850821,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iv 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF iv 2,PF iv 2,PF iv 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iv_2_1.fq.gz PF_iv_2_2.fq.gz,fastq fastq,7161631500.0,23872105.0,PF iv 2 1.fq.gz,0:150 1:150,A:1890379638;C:1697508923;G:1718050265;T:1855664701;N:27973,150,150,,,1890379638,1697508923,1718050265,1855664701,27973,SRX26323777,SRS22850821,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33926,SRR30920849,SRX26323776,SRS22850822,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF i 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF i 2,PF i 2,PF i 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_i_2_1.fq.gz PF_i_2_2.fq.gz,fastq fastq,7036742700.0,23455809.0,PF i 2 1.fq.gz,0:150 1:150,A:1861224200;C:1662236616;G:1671149144;T:1842079812;N:52928,150,150,,,1861224200,1662236616,1671149144,1842079812,52928,SRX26323776,SRS22850822,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 33927,SRR30920850,SRX26323775,SRS22850820,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF i 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF i 1,PF i 1,PF i 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_i_1_1.fq.gz PF_i_1_2.fq.gz,fastq fastq,6977957400.0,23259858.0,PF i 1 1.fq.gz,0:150 1:150,A:1821299728;C:1674791787;G:1691820873;T:1790017865;N:27147,150,150,,,1821299728,1674791787,1691820873,1790017865,27147,SRX26323775,SRS22850820,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System 34100,SRR31179089,SRX26561802,SRS23067260,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L21,L1EIC0700904 T L2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:9|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L21,L21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700904-T_L2.R1.raw.fastq.gz L1EIC0700904-T_L2.R2.raw.fastq.gz,fastq fastq,6755197306.0,22368203.0,L1EIC0700904 T L2.R1.raw.fastq.gz,0:151 1:151,A:1778527472;C:1586407415;G:1611223994;T:1770639781;N:8398644,151,151,,,1778527472,1586407415,1611223994,1770639781,8398644,SRX26561802,SRS23067260,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34101,SRR31179090,SRX26561801,SRS23067261,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L11,L1EIC0700903 T L1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:7|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L11,L11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700903-T_L1.R1.raw.fastq.gz L1EIC0700903-T_L1.R2.raw.fastq.gz,fastq fastq,7262619518.0,24048409.0,L1EIC0700903 T L1.R1.raw.fastq.gz,0:151 1:151,A:1897564712;C:1719515913;G:1744510723;T:1891980402;N:9047768,151,151,,,1897564712,1719515913,1744510723,1891980402,9047768,SRX26561801,SRS23067261,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34102,SRR31179091,SRX26561800,SRS23067257,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C31,L1EIC0700902 T C3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C31,C31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700902-T_C3.R1.raw.fastq.gz L1EIC0700902-T_C3.R2.raw.fastq.gz,fastq fastq,6986250560.0,23133280.0,L1EIC0700902 T C3.R1.raw.fastq.gz,0:151 1:151,A:1814714141;C:1667167814;G:1686637674;T:1809014055;N:8716876,151,151,,,1814714141,1667167814,1686637674,1809014055,8716876,SRX26561800,SRS23067257,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34103,SRR31179092,SRX26561799,SRS23067259,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C21,L1EIC0700901 T C2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C21,C21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700901-T_C2.R1.raw.fastq.gz L1EIC0700901-T_C2.R2.raw.fastq.gz,fastq fastq,7084353146.0,23458123.0,L1EIC0700901 T C2.R1.raw.fastq.gz,0:151 1:151,A:1860686893;C:1670094870;G:1691858523;T:1852823738;N:8889122,151,151,,,1860686893,1670094870,1691858523,1852823738,8889122,SRX26561799,SRS23067259,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34104,SRR31179093,SRX26561798,SRS23067255,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S31,L1EIC0700908 T S3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:17|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S31,S31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700908-T_S3.R1.raw.fastq.gz L1EIC0700908-T_S3.R2.raw.fastq.gz,fastq fastq,6992611888.0,23154344.0,L1EIC0700908 T S3.R1.raw.fastq.gz,0:151 1:151,A:1891265867;C:1594515809;G:1615494569;T:1882648469;N:8687174,151,151,,,1891265867,1594515809,1615494569,1882648469,8687174,SRX26561798,SRS23067255,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34105,SRR31179094,SRX26561797,SRS23067258,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S21,L1EIC0700907 T S2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:15|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S21,S21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700907-T_S2.R1.raw.fastq.gz L1EIC0700907-T_S2.R2.raw.fastq.gz,fastq fastq,6223201958.0,20606629.0,L1EIC0700907 T S2.R1.raw.fastq.gz,0:151 1:151,A:1635455481;C:1467707544;G:1484789988;T:1627505187;N:7743758,151,151,,,1635455481,1467707544,1484789988,1627505187,7743758,SRX26561797,SRS23067258,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34106,SRR31179095,SRX26561796,SRS23067256,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S11,L1EIC0700906 T S1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:13|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S11,S11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700906-T_S1.R1.raw.fastq.gz L1EIC0700906-T_S1.R2.raw.fastq.gz,fastq fastq,6882679660.0,22790330.0,L1EIC0700906 T S1.R1.raw.fastq.gz,0:151 1:151,A:1805328115;C:1625761692;G:1646060059;T:1796837143;N:8692651,151,151,,,1805328115,1625761692,1646060059,1796837143,8692651,SRX26561796,SRS23067256,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34107,SRR31179096,SRX26561795,SRS23067254,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L31,L1EIC0700905 T L3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:11|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L31,L31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700905-T_L3.R1.raw.fastq.gz L1EIC0700905-T_L3.R2.raw.fastq.gz,fastq fastq,6901039146.0,22851123.0,L1EIC0700905 T L3.R1.raw.fastq.gz,0:151 1:151,A:1796093025;C:1641065561;G:1664159837;T:1791078184;N:8642539,151,151,,,1796093025,1641065561,1664159837,1791078184,8642539,SRX26561795,SRS23067254,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34108,SRR31179097,SRX26561794,SRS23067253,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C11,L1EIC0700900 T C1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C11,C11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700900-T_C1.R1.raw.fastq.gz L1EIC0700900-T_C1.R2.raw.fastq.gz,fastq fastq,10565913034.0,34986467.0,L1EIC0700900 T C1.R1.raw.fastq.gz,0:151 1:151,A:2737543425;C:2523674862;G:2563177427;T:2728317948;N:13199372,151,151,,,2737543425,2523674862,2563177427,2728317948,13199372,SRX26561794,SRS23067253,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System 34128,SRR31371655,SRX26745254,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,PC3 R1.fq,PC3 R1.fq,CuNPs and melatonin treatment,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,PC3_R1.fq.gz PC3_R2.fq.gz,fastq fastq,8050557450.0,26657475.0,PC3 R1.fq.gz,,,,,,,,,,,,SRX26745254,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34129,SRR31371656,SRX26745253,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,PC2 R1.fq,PC2 R1.fq,CuNPs and melatonin treatment,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,PC2_R1.fq.gz PC2_R2.fq.gz,fastq fastq,7072903722.0,23420211.0,PC2 R1.fq.gz,0:151 1:151,A:1848366962;C:1685927772;G:1702568524;T:1835518466;N:521998,151,151,,,1848366962,1685927772,1702568524,1835518466,521998,SRX26745253,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34130,SRR31371657,SRX26745252,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,PC1 R1.fq,PC1 R1.fq,CuNPs and melatonin treatment,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,PC1_R1.fq.gz PC1_R2.fq.gz,fastq fastq,9551575668.0,31627734.0,PC1 R1.fq.gz,,,,,,,,,,,,SRX26745252,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34131,SRR31371658,SRX26745251,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,PB3 R1.fq,PB3 R1.fq,CuNPs treatment,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,PB3_R1.fq.gz PB3_R2.fq.gz,fastq fastq,6839092000.0,22646000.0,PB3 R1.fq.gz,,,,,,,,,,,,SRX26745251,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34132,SRR31371659,SRX26745250,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,PB2 R1.fq,PB2 R1.fq,CuNPs treatment,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,PB2_R1.fq.gz PB2_R2.fq.gz,fastq fastq,7582292558.0,25106929.0,PB2 R1.fq.gz,,,,,,,,,,,,SRX26745250,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34133,SRR31371660,SRX26745249,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,PB1 R1.fq,PB1 R1.fq,CuNPs treatment,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,PB1_R1.fq.gz PB1_R2.fq.gz,fastq fastq,8122972218.0,26897259.0,PB1 R1.fq.gz,,,,,,,,,,,,SRX26745249,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34134,SRR31371661,SRX26745248,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,CA3 R1.fq,CA3 R1.fq,control,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,CA3_R1.fq.gz CA3_R2.fq.gz,fastq fastq,7638136586.0,25291843.0,CA3 R1.fq.gz,,,,,,,,,,,,SRX26745248,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34135,SRR31371662,SRX26745247,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,CA1 R1.fq,CA1 R1.fq,control,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,CA1_R1.fq.gz CA1_R2.fq.gz,fastq fastq,7499744784.0,24833592.0,CA1 R1.fq.gz,0:151 1:151,A:1951636355;C:1801626786;G:1812560367;T:1933366696;N:554580,151,151,,,1951636355,1801626786,1812560367,1933366696,554580,SRX26745247,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34136,SRR31371663,SRX26745246,SRS23234144,SRP545712,PRJNA1186363,Danio rerio Transcriptome or Gene expression,PRJNA1186363,Other,Gonad tissue of juvenile zebrafish post long term treatment with nano copper or melatonin,,,,Model organism or animal sample from zebrafish,zebra001,,cultivar:zebrafish|age:40dpf|collection date:2024 11 15|geo loc name:China|sex:female|tissue:Freshwater Fisheries Research Center of ChineseAcademy of Fishery Sciences|zebrafish:Gonadal development|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq from the gonad of Zebrafish,CA2 R1.fq,CA2 R1.fq,control,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP545712,,,CA2_R1.fq.gz CA2_R2.fq.gz,fastq fastq,6253035330.0,20705415.0,CA2 R1.fq.gz,,,,,,,,,,,,SRX26745246,SRS23234144,SRA2016483,Chinese Academy of Fishery Science|Freshwater Fishery Research Center,Chinese Academy of Fishery Science,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-11-17,Juvenile,Juvenile,Gonad,Reproductive System 34409,SRR31747815,SRX27109876,SRS23567839,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB2,,strain:not collected|isolate:liver AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172628,LRA172628,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB2_R1.fastq.gz AFB2_R2.fastq.gz,fastq fastq,7190069454.0,23808177.0,AFB2 R1.fastq.gz,0:151 1:151,A:2078244342;C:1510893083;G:1547178609;T:2053626767;N:126653,151,151,,,2078244342,1510893083,1547178609,2053626767,126653,SRX27109876,SRS23567839,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34410,SRR31747816,SRX27109875,SRS23567837,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB1,,strain:not collected|isolate:liver AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172627,LRA172627,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB1_R1.fastq.gz AFB1_R2.fastq.gz,fastq fastq,7463779000.0,24714500.0,AFB1 R1.fastq.gz,0:151 1:151,A:2176506326;C:1554667596;G:1582400568;T:2150036004;N:168506,151,151,,,2176506326,1554667596,1582400568,2150036004,168506,SRX27109875,SRS23567837,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34411,SRR31747817,SRX27109874,SRS23567838,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO4,,strain:not collected|isolate:liver EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172635,LRA172635,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO4_R1.fastq.gz EPO4_R2.fastq.gz,fastq fastq,8273309328.0,27395064.0,EPO4 R1.fastq.gz,0:151 1:151,A:2390853071;C:1742121394;G:1771230346;T:2368915323;N:189194,151,151,,,2390853071,1742121394,1771230346,2368915323,189194,SRX27109874,SRS23567838,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34412,SRR31747818,SRX27109873,SRS23567836,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO3,,strain:not collected|isolate:liver EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172634,LRA172634,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO3_R1.fastq.gz EPO3_R2.fastq.gz,fastq fastq,7097420082.0,23501391.0,EPO3 R1.fastq.gz,0:151 1:151,A:2092952383;C:1451623472;G:1477150205;T:2075535584;N:158438,151,151,,,2092952383,1451623472,1477150205,2075535584,158438,SRX27109873,SRS23567836,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34413,SRR31747819,SRX27109872,SRS23567834,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO2,,strain:not collected|isolate:liver EPO2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172633,LRA172633,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO2_R1.fastq.gz EPO2_R2.fastq.gz,fastq fastq,7332924514.0,24281207.0,EPO2 R1.fastq.gz,0:151 1:151,A:2162671338;C:1496551996;G:1515648771;T:2157891639;N:160770,151,151,,,2162671338,1496551996,1515648771,2157891639,160770,SRX27109872,SRS23567834,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34414,SRR31747820,SRX27109871,SRS23567835,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO1,,strain:not collected|isolate:liver EPO1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172632,LRA172632,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO1_R1.fastq.gz EPO1_R2.fastq.gz,fastq fastq,8287626544.0,27442472.0,EPO1 R1.fastq.gz,0:151 1:151,A:2435156330;C:1694808350;G:1717315788;T:2440143946;N:202130,151,151,,,2435156330,1694808350,1717315788,2440143946,202130,SRX27109871,SRS23567835,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34415,SRR31747821,SRX27109870,SRS23567833,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK5,,strain:not collected|isolate:liver CK4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172626,LRA172626,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK5_R1.fastq.gz CK5_R2.fastq.gz,fastq fastq,7157140280.0,23699140.0,CK5 R1.fastq.gz,0:151 1:151,A:2092635667;C:1492801085;G:1512780390;T:2058759456;N:163682,151,151,,,2092635667,1492801085,1512780390,2058759456,163682,SRX27109870,SRS23567833,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34416,SRR31747822,SRX27109869,SRS23567832,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK4,,strain:not collected|isolate:liver CK3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172625,LRA172625,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK4_R1.fastq.gz CK4_R2.fastq.gz,fastq fastq,5903236582.0,19547141.0,CK4 R1.fastq.gz,0:151 1:151,A:1649245280;C:1297061493;G:1327173777;T:1629624071;N:131961,151,151,,,1649245280,1297061493,1327173777,1629624071,131961,SRX27109869,SRS23567832,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34417,SRR31747823,SRX27109868,SRS23567831,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM5,,strain:not collected|isolate:liver COM4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172641,LRA172641,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM5_R1.fastq.gz COM5_R2.fastq.gz,fastq fastq,7598066924.0,25159162.0,COM5 R1.fastq.gz,0:151 1:151,A:2223131767;C:1578956803;G:1603115446;T:2192694602;N:168306,151,151,,,2223131767,1578956803,1603115446,2192694602,168306,SRX27109868,SRS23567831,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34418,SRR31747824,SRX27109867,SRS23567830,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM4,,strain:not collected|isolate:liver COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172640,LRA172640,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM4_R1.fastq.gz COM4_R2.fastq.gz,fastq fastq,7633749130.0,25277315.0,COM4 R1.fastq.gz,0:151 1:151,A:2223410712;C:1603699864;G:1630586500;T:2175879626;N:172428,151,151,,,2223410712,1603699864,1630586500,2175879626,172428,SRX27109867,SRS23567830,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34419,SRR31747825,SRX27109866,SRS23567829,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM3,,strain:not collected|isolate:liver COM2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172639,LRA172639,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM3_R1.fastq.gz COM3_R2.fastq.gz,fastq fastq,7474959946.0,24751523.0,COM3 R1.fastq.gz,0:151 1:151,A:2145268206;C:1597121014;G:1632808908;T:2099584265;N:177553,151,151,,,2145268206,1597121014,1632808908,2099584265,177553,SRX27109866,SRS23567829,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34420,SRR31747826,SRX27109865,SRS23567827,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM2,,strain:not collected|isolate:liver COM1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172638,LRA172638,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM2_R1.fastq.gz COM2_R2.fastq.gz,fastq fastq,8791460090.0,29110795.0,COM2 R1.fastq.gz,0:151 1:151,A:2541630685;C:1869577126;G:1894336180;T:2485706665;N:209434,151,151,,,2541630685,1869577126,1894336180,2485706665,209434,SRX27109865,SRS23567827,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34421,SRR31747827,SRX27109864,SRS23567828,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB4,,strain:not collected|isolate:liver AFB4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172630,LRA172630,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB4_R1.fastq.gz AFB4_R2.fastq.gz,fastq fastq,7267902102.0,24065901.0,AFB4 R1.fastq.gz,0:151 1:151,A:2123758982;C:1506909715;G:1535054542;T:2102016033;N:162830,151,151,,,2123758982,1506909715,1535054542,2102016033,162830,SRX27109864,SRS23567828,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34422,SRR31747828,SRX27109863,SRS23567826,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB3,,strain:not collected|isolate:liver AFB3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172629,LRA172629,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB3_R1.fastq.gz AFB3_R2.fastq.gz,fastq fastq,6300108070.0,20861285.0,AFB3 R1.fastq.gz,0:151 1:151,A:1796927680;C:1350016175;G:1379242261;T:1773425050;N:496904,151,151,,,1796927680,1350016175,1379242261,1773425050,496904,SRX27109863,SRS23567826,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34423,SRR31747829,SRX27109862,SRS23567825,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK2,,strain:not collected|isolate:liver CK2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172623,LRA172623,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK2_R1.fastq.gz CK2_R2.fastq.gz,fastq fastq,6706705770.0,22207635.0,CK2 R1.fastq.gz,0:151 1:151,A:1918005955;C:1429871875;G:1469836872;T:1888840563;N:150505,151,151,,,1918005955,1429871875,1469836872,1888840563,150505,SRX27109862,SRS23567825,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34424,SRR31747830,SRX27109861,SRS23567824,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK1,,strain:not collected|isolate:liver CK1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172622,LRA172622,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK1_R1.fastq.gz CK1_R2.fastq.gz,fastq fastq,6319435768.0,20925284.0,CK1 R1.fastq.gz,0:151 1:151,A:1793805737;C:1361852588;G:1396171190;T:1767105304;N:500949,151,151,,,1793805737,1361852588,1396171190,1767105304,500949,SRX27109861,SRS23567824,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System 34425,SRR31754963,SRX27116846,SRS23574567,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary AFB2,,strain:not collected|isolate:ovary AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172648,LRA172648,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,AFB2_R2.fastq.gz AFB2_R1.fastq.gz,fastq fastq,8264268656.0,27365128.0,AFB2 R1.fastq.gz,0:151 1:151,A:2181967333;C:1933268479;G:1966876338;T:2182007880;N:148626,151,151,,,2181967333,1933268479,1966876338,2182007880,148626,SRX27116846,SRS23574567,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System 34426,SRR31754964,SRX27116845,SRS23574566,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary AFB1,,strain:not collected|isolate:ovary AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172647,LRA172647,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,AFB1_R1.fastq.gz AFB1_R2.fastq.gz,fastq fastq,8208094240.0,27179120.0,AFB1 R1.fastq.gz,0:151 1:151,A:2198424448;C:1899278946;G:1926174417;T:2184068899;N:147530,151,151,,,2198424448,1899278946,1926174417,2184068899,147530,SRX27116845,SRS23574566,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System 34427,SRR31754965,SRX27116844,SRS23574565,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary EPO4,,strain:not collected|isolate:ovary EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172655,LRA172655,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,EPO4_R1.fastq.gz EPO4_R2.fastq.gz,fastq fastq,6421073868.0,21261834.0,EPO4 R1.fastq.gz,0:151 1:151,A:1714628675;C:1485463411;G:1507815048;T:1712492241;N:674493,151,151,,,1714628675,1485463411,1507815048,1712492241,674493,SRX27116844,SRS23574565,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System 34428,SRR31754966,SRX27116843,SRS23574564,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary EPO3,,strain:not collected|isolate:ovary EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172654,LRA172654,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,EPO3_R1.fastq.gz EPO3_R2.fastq.gz,fastq fastq,12384393350.0,41007925.0,EPO3 R1.fastq.gz,0:151 1:151,A:3299390090;C:2870219776;G:2921073783;T:3292432295;N:1277406,151,151,,,3299390090,2870219776,2921073783,3292432295,1277406,SRX27116843,SRS23574564,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System