rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
57197,SRR11267492,SRX7874162,SRS6282467,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,ME wt 3,,strain:Abtu|ecotype:wild type|dev stage:adult|sex:male|tissue:eye|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,wild type male eyes replicate 3,ME wt 3,ME wt 3,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-23-W3ME_RRA121665-V_2.fq.gz s-23-W3ME_RRA121665-V_1.fq.gz,fastq fastq,8400228000.0,28000760.0,s 23 W3ME RRA121665 V 1.fq.gz,0:150 1:150,A:2303053910;C:1920194253;G:1910340116;T:2266331748;N:307973,150,150,,,2303053910,1920194253,1910340116,2266331748,307973,SRX7874162,SRS6282467,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.93001,0.92886,0.11082,0.10982,0.68866,0.68822,0.48763,0.4906,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57198,SRR11267493,SRX7874161,SRS6282466,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,ME wt 2,,strain:Abtu|ecotype:wild type|dev stage:adult|sex:male|tissue:eye|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,wild type male eyes replicate 2,ME wt 2,ME wt 2,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-19-W2ME_RRA121661-V_1.fq.gz s-19-W2ME_RRA121661-V_2.fq.gz,fastq fastq,6889800000.0,22966000.0,s 19 W2ME RRA121661 V 1.fq.gz,0:150 1:150,A:1880210832;C:1583780885;G:1578593218;T:1846963840;N:251225,150,150,,,1880210832,1583780885,1578593218,1846963840,251225,SRX7874161,SRS6282466,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.9279,0.92649,0.10311,0.10204,0.68532,0.68647,0.48037,0.48511,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57199,SRR11267494,SRX7874160,SRS6282464,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,ME wt 1,,strain:Abtu|ecotype:wild type|dev stage:adult|sex:male|tissue:eye|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,wild type male eyes replicate 1,ME wt 1,ME wt 1,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-15-W1ME_RRA121657-V_2.fq.gz s-15-W1ME_RRA121657-V_1.fq.gz,fastq fastq,6969091200.0,23230304.0,s 15 W1ME RRA121657 V 1.fq.gz,0:150 1:150,A:1921340190;C:1585088835;G:1576239642;T:1886167585;N:254948,150,150,,,1921340190,1585088835,1576239642,1886167585,254948,SRX7874160,SRS6282464,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92763,0.92509,0.11658,0.11517,0.68432,0.68653,0.4946,0.49155,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57200,SRR11267495,SRX7874159,SRS6282465,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,ME mut 3,,strain:Abtu|ecotype:mutant|dev stage:adult|sex:male|tissue:eye|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,mutant male eyes replicate 3,ME mut 3,ME mut 3,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-11-MU3ME_RRA121653-V_1.fq.gz s-11-MU3ME_RRA121653-V_2.fq.gz,fastq fastq,6875632800.0,22918776.0,s 11 MU3ME RRA121653 V 1.fq.gz,0:150 1:150,A:1901087754;C:1556469824;G:1548197705;T:1869624741;N:252776,150,150,,,1901087754,1556469824,1548197705,1869624741,252776,SRX7874159,SRS6282465,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92604,0.92413,0.11832,0.11725,0.67748,0.67949,0.49008,0.49228,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57201,SRR11267496,SRX7874158,SRS6282463,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,ME mut 2,,strain:Abtu|ecotype:mutant|dev stage:adult|sex:male|tissue:eye|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,mutant male eyes replicate 2,ME mut 2,ME mut 2,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-7-MU2ME_RRA121649-V_1.fq.gz s-7-MU2ME_RRA121649-V_2.fq.gz,fastq fastq,6847404900.0,22824683.0,s 7 MU2ME RRA121649 V 1.fq.gz,0:150 1:150,A:1892928093;C:1547660086;G:1542947611;T:1863669155;N:199955,150,150,,,1892928093,1547660086,1542947611,1863669155,199955,SRX7874158,SRS6282463,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.9251,0.92453,0.12038,0.11934,0.68363,0.68381,0.49355,0.49262,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57202,SRR11267497,SRX7874157,SRS6282462,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,ME mut 1,,strain:Abtu|ecotype:mutant|dev stage:adult|sex:male|tissue:eye|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,mutant male eyes replicate 1,ME mut 1,ME mut 1,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-3-MU1ME_RRA121645-V_1.fq.gz s-3-MU1ME_RRA121645-V_2.fq.gz,fastq fastq,6878336700.0,22927789.0,s 3 MU1ME RRA121645 V 1.fq.gz,0:150 1:150,A:1905585865;C:1552515358;G:1547182571;T:1872802386;N:250520,150,150,,,1905585865,1552515358,1547182571,1872802386,250520,SRX7874157,SRS6282462,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92648,0.92449,0.12124,0.11959,0.68688,0.68996,0.48933,0.48791,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57210,SRR11267505,SRX7874149,SRS6282454,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,FE wt 3,,strain:Abtu|ecotype:wild type|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,wild type female eyes replicate 3,FE wt 3,FE wt 3,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-21-W3FE_RRA121663-V_2.fq.gz s-21-W3FE_RRA121663-V_1.fq.gz,fastq fastq,7633204500.0,25444015.0,s 21 W3FE RRA121663 V 1.fq.gz,0:150 1:150,A:2091516097;C:1748144881;G:1739108541;T:2054153967;N:281014,150,150,,,2091516097,1748144881,1739108541,2054153967,281014,SRX7874149,SRS6282454,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.9346,0.93156,0.11275,0.11113,0.69027,0.69436,0.47761,0.47697,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57211,SRR11267506,SRX7874148,SRS6282453,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,FE wt 2,,strain:Abtu|ecotype:wild type|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,wild type female eyes replicate 2,FE wt 2,FE wt 2,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-17-W2FE_RRA121659-V_1.fq.gz s-17-W2FE_RRA121659-V_2.fq.gz,fastq fastq,6558727800.0,21862426.0,s 17 W2FE RRA121659 V 1.fq.gz,0:150 1:150,A:1802562905;C:1497351051;G:1488752362;T:1769827486;N:233996,150,150,,,1802562905,1497351051,1488752362,1769827486,233996,SRX7874148,SRS6282453,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92878,0.92365,0.11321,0.11111,0.68517,0.68872,0.49201,0.48744,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57212,SRR11267507,SRX7874147,SRS6282451,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,FE wt 1,,strain:Abtu|ecotype:wild type|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,wild type female eyes replicate 1,FE wt 1,FE wt 1,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-13-W1FE_RRA121655-V_1.fq.gz s-13-W1FE_RRA121655-V_2.fq.gz,fastq fastq,8123083800.0,27076946.0,s 13 W1FE RRA121655 V 1.fq.gz,0:150 1:150,A:2228184139;C:1856303514;G:1847105654;T:2191192871;N:297622,150,150,,,2228184139,1856303514,1847105654,2191192871,297622,SRX7874147,SRS6282451,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92966,0.92938,0.1125,0.11144,0.68678,0.68777,0.48758,0.48653,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57213,SRR11267508,SRX7874146,SRS6282450,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,FE mut 3,,strain:Abtu|ecotype:mutant|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,mutant female eyes replicate 3,FE mut 3,FE mut 3,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-9-MU3FE_RRA121651-V_1.fq.gz s-9-MU3FE_RRA121651-V_2.fq.gz,fastq fastq,6656295300.0,22187651.0,s 9 MU3FE RRA121651 V 1.fq.gz,0:150 1:150,A:1847801770;C:1499187682;G:1491392362;T:1817671236;N:242250,150,150,,,1847801770,1499187682,1491392362,1817671236,242250,SRX7874146,SRS6282450,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92627,0.92542,0.122,0.12099,0.68067,0.68166,0.48197,0.48852,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57214,SRR11267509,SRX7874145,SRS6282449,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,FE mut 2,,strain:Abtu|ecotype:mutant|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,mutant female eyes replicate 2,FE mut 2,FE mut 2,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-5-MU2FE_RRA121647-V_1.fq.gz s-5-MU2FE_RRA121647-V_2.fq.gz,fastq fastq,7413634500.0,24712115.0,s 5 MU2FE RRA121647 V 1.fq.gz,0:150 1:150,A:2065563537;C:1663387773;G:1656105625;T:2028307360;N:270205,150,150,,,2065563537,1663387773,1656105625,2028307360,270205,SRX7874145,SRS6282449,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92762,0.92397,0.12723,0.12529,0.68984,0.694,0.49347,0.47963,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
57215,SRR11267510,SRX7874144,SRS6282452,SRP252014,PRJNA611476,RNAseq between mutant and wild type zebrafish at different developmental stages,PRJNA611476,Other,,,,,,FE mut 1,,strain:Abtu|ecotype:mutant|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,mutant female eyes replicate 1,FE mut 1,FE mut 1,common method,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP252014,,,s-1-MU1FE_RRA121643-V_1.fq.gz s-1-MU1FE_RRA121643-V_2.fq.gz,fastq fastq,6864021300.0,22880071.0,s 1 MU1FE RRA121643 V 1.fq.gz,0:150 1:150,A:1901112450;C:1549381718;G:1544210321;T:1869066007;N:250804,150,150,,,1901112450,1549381718,1544210321,1869066007,250804,SRX7874144,SRS6282452,SRA1052323,Sun Yat-sen University|College of Life Sciences,Sun Yat-sen University,2,0.92425,0.92283,0.12022,0.1186,0.68613,0.68716,0.48698,0.49353,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-03-09,Adult,Adult,Eye,Sensory System
67527,SRR17221754,SRX13401340,SRS11304399,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,cep290 retina 4,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:cep290|Biological replicates:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish cep290 mutant retina,GC SG 620 8,GC SG 620 8,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_8_S8_L001_R1_001.fastq.gz GC.SG.620_8_S8_L001_R2_001.fastq.gz,fastq fastq,38697433494.0,128137197.0,GC.SG.620 8 S8 L001 R1 001.fastq.gz,0:151 1:151,A:10897381553;C:8539501524;G:8224720333;T:11035084087;N:745997,151,151,,,10897381553,8539501524,8224720333,11035084087,745997,SRX13401340,SRS11304399,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.66646,0.66004,0.33083,0.32152,0.77684,0.77871,0.51619,0.52281,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67528,SRR17221755,SRX13401339,SRS11304398,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,cep290 retina 3,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:cep290|Biological replicates:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish cep290 mutant retina,GC SG 620 7,GC SG 620 7,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_7_S7_L001_R1_001.fastq.gz GC.SG.620_7_S7_L001_R2_001.fastq.gz,fastq fastq,40407223708.0,133798754.0,GC.SG.620 7 S7 L001 R1 001.fastq.gz,0:151 1:151,A:11339805352;C:9005002277;G:8600624695;T:11460947185;N:844199,151,151,,,11339805352,9005002277,8600624695,11460947185,844199,SRX13401339,SRS11304398,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.65733,0.65156,0.33459,0.32709,0.77952,0.78007,0.53039,0.51873,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67529,SRR17221756,SRX13401338,SRS11304397,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,cep290 retina 2,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:cep290|Biological replicates:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish cep290 mutant retina,GC SG 620 6,GC SG 620 6,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_6_S6_L001_R1_001.fastq.gz GC.SG.620_6_S6_L001_R2_001.fastq.gz,fastq fastq,35177430214.0,116481557.0,GC.SG.620 6 S6 L001 R1 001.fastq.gz,0:151 1:151,A:9864372223;C:7781916441;G:7479621981;T:10050875158;N:644411,151,151,,,9864372223,7781916441,7479621981,10050875158,644411,SRX13401338,SRS11304397,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.66029,0.65697,0.32728,0.32142,0.7783,0.77522,0.53642,0.5381,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67530,SRR17221757,SRX13401337,SRS11304396,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,cep290 retina 1,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:cep290|Biological replicates:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish cep290 mutant retina,GC SG 620 5,GC SG 620 5,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_5_S5_L001_R1_001.fastq.gz GC.SG.620_5_S5_L001_R2_001.fastq.gz,fastq fastq,38272092466.0,126728783.0,GC.SG.620 5 S5 L001 R1 001.fastq.gz,0:151 1:151,A:10830892004;C:8426926025;G:8067309850;T:10946162775;N:801812,151,151,,,10830892004,8426926025,8067309850,10946162775,801812,SRX13401337,SRS11304396,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.65684,0.64515,0.33008,0.31832,0.78031,0.78194,0.53178,0.53091,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67531,SRR17221758,SRX13401336,SRS11304395,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,wild type retina 4,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:wild type|Biological replicates:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish wild type retina,GC SG 620 4,GC SG 620 4,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_4_S4_L001_R1_001.fastq.gz GC.SG.620_4_S4_L001_R2_001.fastq.gz,fastq fastq,32602935480.0,107956740.0,GC.SG.620 4 S4 L001 R1 001.fastq.gz,0:151 1:151,A:9278245354;C:7208634191;G:6856278967;T:9259105244;N:671724,151,151,,,9278245354,7208634191,6856278967,9259105244,671724,SRX13401336,SRS11304395,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.6468,0.64033,0.32923,0.32003,0.77977,0.78299,0.50698,0.5109,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67532,SRR17221759,SRX13401335,SRS11304394,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,wild type retina 3,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:wild type|Biological replicates:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish wild type retina,GC SG 620 3,GC SG 620 3,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_3_S3_L001_R1_001.fastq.gz GC.SG.620_3_S3_L001_R2_001.fastq.gz,fastq fastq,33920268842.0,112318771.0,GC.SG.620 3 S3 L001 R1 001.fastq.gz,0:151 1:151,A:9639086006;C:7411263175;G:7053516817;T:9815703633;N:699211,151,151,,,9639086006,7411263175,7053516817,9815703633,699211,SRX13401335,SRS11304394,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.65174,0.64442,0.33877,0.32993,0.77875,0.78123,0.51364,0.52557,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67533,SRR17221760,SRX13401334,SRS11304393,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,wild type retina 2,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:wild type|Biological replicates:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish wild type retina,GC SG 620 2,GC SG 620 2,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_2_S2_L001_R1_001.fastq.gz GC.SG.620_2_S2_L001_R2_001.fastq.gz,fastq fastq,30605822768.0,101343784.0,GC.SG.620 2 S2 L001 R1 001.fastq.gz,0:151 1:151,A:8456172381;C:6948566987;G:6670164511;T:8530293907;N:624982,151,151,,,8456172381,6948566987,6670164511,8530293907,624982,SRX13401334,SRS11304393,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.62585,0.61421,0.29606,0.28346,0.78508,0.78683,0.53231,0.5408,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
67534,SRR17221761,SRX13401333,SRS11304392,SRP350597,PRJNA787536,Danio rerio Raw sequence reads,PRJNA787536,Other,RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf.,,,,,wild type retina 1,,strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:wild type|Biological replicates:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of 6 mpf adult zebrafish wild type retina,GC SG 620 1,GC SG 620 1,RNA isolated from single retina prepared using Illumina stranded mRNA kits,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP350597,,,GC.SG.620_1_S1_L001_R1_001.fastq.gz GC.SG.620_1_S1_L001_R2_001.fastq.gz,fastq fastq,31969773756.0,105860178.0,GC.SG.620 1 S1 L001 R1 001.fastq.gz,0:151 1:151,A:8889341732;C:7177178690;G:6928940526;T:8973631071;N:681737,151,151,,,8889341732,7177178690,6928940526,8973631071,681737,SRX13401333,SRS11304392,SRA1342775,Cleveland Clinic|Ophthalmic Research,Cleveland Clinic,2,0.67113,0.66355,0.32731,0.31578,0.78399,0.78593,0.53938,0.5511,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,United States,2021-12-13,Adult,Adult,Eye,Sensory System
69473,SRR18712322,SRX14812929,SRS12569572,SRP369458,PRJNA825495,Regulation of retina microexons by srrm3 in zebrafish,PRJNA825495,Other,To investigate the role of srrm3 as a regulator of retina microexons RetMICs we have sequenced heads from WT animals at 24 hpf and enucleated eyes from 48 hpf  60 hpf  and 72 hpf larvae WT and KO for srrm3.,,,,,Eye 72hpf WT b,,strain:WT|dev stage:72 hpf|sex:NA|tissue:Eye|BioSampleModel:Model organism or animal,,,,,,,,,Eyes from 72 hpf larvae WT for the eMIC domain of srrm3.,Eye 72hpf WT,Eye 72hpf WT,WT and srrm3 mutant zebrafish were grown at  28C 14h light/10h dark cycle. Extract protocol: 24 hpf WT fish heads were removed and pulled for RNA extraction using RNA RNeasy Mini kit QIAGEN. Larvae eyes were removed and from twenty to sixty eyes per genotype were pulled for RNA extraction using RNA RNeasy Micro kit QIAGENLibrary preparation: RNA libraries were prepared for sequencing using standard Illumina protocols; polyA selected stranded RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP369458,,,Eye_72hpf_WT_b_R1-125.fq.gz Eye_72hpf_WT_b_R2-125.fq.gz,fastq fastq,13437032500.0,53748130.0,Eye 72hpf WT b R1 125.fq.gz,0:125 1:125,A:3455929483;C:3259662773;G:3290102413;T:3423551193;N:7786638,125,125,,,3455929483,3259662773,3290102413,3423551193,7786638,SRX14812929,SRS12569572,SRA1402039,Centre for Genomic Regulation|Systems Biology,Centre for Genomic Regulation|Systems Biology,2,0.97078,0.97143,0.04457,0.04373,0.68312,0.68594,0.4516,0.45911,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Spain,2022-04-11,Larval,Larval,Eye,Sensory System
69474,SRR18712323,SRX14812928,SRS12569571,SRP369458,PRJNA825495,Regulation of retina microexons by srrm3 in zebrafish,PRJNA825495,Other,To investigate the role of srrm3 as a regulator of retina microexons RetMICs we have sequenced heads from WT animals at 24 hpf and enucleated eyes from 48 hpf  60 hpf  and 72 hpf larvae WT and KO for srrm3.,,,,,Eye 72hpf MUT b,,strain:srrm3 MUT|dev stage:72 hpf|sex:NA|tissue:Eye|BioSampleModel:Model organism or animal,,,,,,,,,Eyes from 72 hpf larvae mutated for the eMIC domain of srrm3.,Eye 72hpf MUT,Eye 72hpf MUT,WT and srrm3 mutant zebrafish were grown at  28C 14h light/10h dark cycle. Extract protocol: 24 hpf WT fish heads were removed and pulled for RNA extraction using RNA RNeasy Mini kit QIAGEN. Larvae eyes were removed and from twenty to sixty eyes per genotype were pulled for RNA extraction using RNA RNeasy Micro kit QIAGENLibrary preparation: RNA libraries were prepared for sequencing using standard Illumina protocols; polyA selected stranded RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP369458,,,Eye_72hpf_MUT_b_R1-125.fq.gz Eye_72hpf_MUT_b_R2-125.fq.gz,fastq fastq,14446388500.0,57785554.0,Eye 72hpf MUT b R1 125.fq.gz,0:125 1:125,A:3747033220;C:3473175271;G:3502836837;T:3715008771;N:8334401,125,125,,,3747033220,3473175271,3502836837,3715008771,8334401,SRX14812928,SRS12569571,SRA1402039,Centre for Genomic Regulation|Systems Biology,Centre for Genomic Regulation|Systems Biology,2,0.96991,0.97029,0.04938,0.04899,0.6813,0.68613,0.44741,0.44599,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Spain,2022-04-11,Larval,Larval,Eye,Sensory System
69475,SRR18712324,SRX14812927,SRS12569570,SRP369458,PRJNA825495,Regulation of retina microexons by srrm3 in zebrafish,PRJNA825495,Other,To investigate the role of srrm3 as a regulator of retina microexons RetMICs we have sequenced heads from WT animals at 24 hpf and enucleated eyes from 48 hpf  60 hpf  and 72 hpf larvae WT and KO for srrm3.,,,,,Eye 60hpf WT b,,strain:WT|dev stage:60 hpf|sex:NA|tissue:Eye|BioSampleModel:Model organism or animal,,,,,,,,,Eyes from 60 hpf larvae WT for the eMIC domain of srrm3.,Eye 60hpf WT,Eye 60hpf WT,WT and srrm3 mutant zebrafish were grown at  28C 14h light/10h dark cycle. Extract protocol: 24 hpf WT fish heads were removed and pulled for RNA extraction using RNA RNeasy Mini kit QIAGEN. Larvae eyes were removed and from twenty to sixty eyes per genotype were pulled for RNA extraction using RNA RNeasy Micro kit QIAGENLibrary preparation: RNA libraries were prepared for sequencing using standard Illumina protocols; polyA selected stranded RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP369458,,,Eye_60hpf_WT_b_R1-125.fq.gz Eye_60hpf_WT_b_R2-125.fq.gz,fastq fastq,15250592500.0,61002370.0,Eye 60hpf WT b R1 125.fq.gz,0:125 1:125,A:3923837289;C:3702942025;G:3742033933;T:3872922356;N:8856897,125,125,,,3923837289,3702942025,3742033933,3872922356,8856897,SRX14812927,SRS12569570,SRA1402039,Centre for Genomic Regulation|Systems Biology,Centre for Genomic Regulation|Systems Biology,2,0.97168,0.9731,0.0527,0.05258,0.69891,0.70041,0.45973,0.45381,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Spain,2022-04-11,Hatching,Embryo,Eye,Sensory System
69476,SRR18712325,SRX14812926,SRS12569569,SRP369458,PRJNA825495,Regulation of retina microexons by srrm3 in zebrafish,PRJNA825495,Other,To investigate the role of srrm3 as a regulator of retina microexons RetMICs we have sequenced heads from WT animals at 24 hpf and enucleated eyes from 48 hpf  60 hpf  and 72 hpf larvae WT and KO for srrm3.,,,,,Eye 60hpf MUT b,,strain:srrm3 MUT|dev stage:60 hpf|sex:NA|tissue:Eye|BioSampleModel:Model organism or animal,,,,,,,,,Eyes from 60 hpf larvae mutated for the eMIC domain of srrm3.,Eye 60hpf MUT,Eye 60hpf MUT,WT and srrm3 mutant zebrafish were grown at  28C 14h light/10h dark cycle. Extract protocol: 24 hpf WT fish heads were removed and pulled for RNA extraction using RNA RNeasy Mini kit QIAGEN. Larvae eyes were removed and from twenty to sixty eyes per genotype were pulled for RNA extraction using RNA RNeasy Micro kit QIAGENLibrary preparation: RNA libraries were prepared for sequencing using standard Illumina protocols; polyA selected stranded RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP369458,,,Eye_60hpf_MUT_b_R1-125.fq.gz Eye_60hpf_MUT_b_R2-125.fq.gz,fastq fastq,14932544250.0,59730177.0,Eye 60hpf MUT b R1 125.fq.gz,0:125 1:125,A:3891825609;C:3575114135;G:3598083383;T:3858808039;N:8713084,125,125,,,3891825609,3575114135,3598083383,3858808039,8713084,SRX14812926,SRS12569569,SRA1402039,Centre for Genomic Regulation|Systems Biology,Centre for Genomic Regulation|Systems Biology,2,0.96985,0.97098,0.06006,0.0593,0.68939,0.6926,0.46001,0.45867,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Spain,2022-04-11,Hatching,Embryo,Eye,Sensory System
69477,SRR18712326,SRX14812925,SRS12569568,SRP369458,PRJNA825495,Regulation of retina microexons by srrm3 in zebrafish,PRJNA825495,Other,To investigate the role of srrm3 as a regulator of retina microexons RetMICs we have sequenced heads from WT animals at 24 hpf and enucleated eyes from 48 hpf  60 hpf  and 72 hpf larvae WT and KO for srrm3.,,,,,Eye 48hpf WT b,,strain:WT|dev stage:48 hpf|sex:NA|tissue:Eye|BioSampleModel:Model organism or animal,,,,,,,,,Eyes from 48 hpf larvae WT for the eMIC domain of srrm3.,Eye 48hpf WT,Eye 48hpf WT,WT and srrm3 mutant zebrafish were grown at  28C 14h light/10h dark cycle. Extract protocol: 24 hpf WT fish heads were removed and pulled for RNA extraction using RNA RNeasy Mini kit QIAGEN. Larvae eyes were removed and from twenty to sixty eyes per genotype were pulled for RNA extraction using RNA RNeasy Micro kit QIAGENLibrary preparation: RNA libraries were prepared for sequencing using standard Illumina protocols; polyA selected stranded RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP369458,,,Eye_48hpf_WT_b_R1-125.fq.gz Eye_48hpf_WT_b_R2-125.fq.gz,fastq fastq,15736041750.0,62944167.0,Eye 48hpf WT b R1 125.fq.gz,0:125 1:125,A:4076543478;C:3787178416;G:3834447099;T:4028745594;N:9127163,125,125,,,4076543478,3787178416,3834447099,4028745594,9127163,SRX14812925,SRS12569568,SRA1402039,Centre for Genomic Regulation|Systems Biology,Centre for Genomic Regulation|Systems Biology,2,0.97095,0.97209,0.05101,0.05067,0.69408,0.69767,0.47501,0.47714,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Spain,2022-04-11,Hatching,Embryo,Eye,Sensory System
69478,SRR18712327,SRX14812924,SRS12569567,SRP369458,PRJNA825495,Regulation of retina microexons by srrm3 in zebrafish,PRJNA825495,Other,To investigate the role of srrm3 as a regulator of retina microexons RetMICs we have sequenced heads from WT animals at 24 hpf and enucleated eyes from 48 hpf  60 hpf  and 72 hpf larvae WT and KO for srrm3.,,,,,Eye 48hpf MUT b,,strain:srrm3 MUT|dev stage:48 hpf|sex:NA|tissue:Eye|BioSampleModel:Model organism or animal,,,,,,,,,Eyes from 48 hpf larvae mutated for the eMIC domain of srrm3.,Eye 48hpf MUT,Eye 48hpf MUT,WT and srrm3 mutant zebrafish were grown at  28C 14h light/10h dark cycle. Extract protocol: 24 hpf WT fish heads were removed and pulled for RNA extraction using RNA RNeasy Mini kit QIAGEN. Larvae eyes were removed and from twenty to sixty eyes per genotype were pulled for RNA extraction using RNA RNeasy Micro kit QIAGENLibrary preparation: RNA libraries were prepared for sequencing using standard Illumina protocols; polyA selected stranded RNA seq,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP369458,,,Eye_48hpf_MUT_b_R1-125.fq.gz Eye_48hpf_MUT_b_R2-125.fq.gz,fastq fastq,14845531750.0,59382127.0,Eye 48hpf MUT b R1 125.fq.gz,0:125 1:125,A:3879709745;C:3539390575;G:3573173326;T:3844623832;N:8634272,125,125,,,3879709745,3539390575,3573173326,3844623832,8634272,SRX14812924,SRS12569567,SRA1402039,Centre for Genomic Regulation|Systems Biology,Centre for Genomic Regulation|Systems Biology,2,0.9684,0.97006,0.05578,0.05498,0.69183,0.69581,0.472,0.46674,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,trueseq,bulk,unknown,unknown,,Spain,2022-04-11,Hatching,Embryo,Eye,Sensory System