rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
9356,ERR2983452,ERX2986068,ERS2955656,ERP112513,PRJEB30097,RNA Seq of Danionine species,E-MTAB-7476,Transcriptome Analysis,Tissues specific transcriptomes of Danio rerio  Danio albolineatus and Danio aesculapii Brain  Liver and Gonads.,ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05,,Protocols: Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.,R3wB,SAMEA5147911,"University of Hamburg, Institute of Zoology, Molecular Animal Physiology",ENA FIRST PUBLIC:2018 12 05T17:02:27Z|ENA LAST UPDATE:2018 12 05T10:01:48Z|External Id:SAMEA5147911|INSDC center name:University of Hamburg  Institute of Zoology  Molecular Animal Physiology|INSDC first public:2018 12 05T17:02:27Z|INSDC last update:2018 12 05T10:01:48Z|INSDC status:public|Submitter Id:E MTAB 7476:R3wB|age:3|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|individual:3|organism part:brain|sample name:E MTAB 7476:R3wB|scientific name:Danio rerio|sex:female|strain:tu,,,,,,,,,Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danio9 species,E MTAB 7476:R3wB p,R3wB p,RNA Seq of Danionine species,Organs were sampled and snap frozen in liquid nitrogen   RNA was extracted using Trizol and standard silica membrane protocol  Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.,Experimental Factor: organism:Danio rerio|Experimental Factor: organism part:brain,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_LABEL>F</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_LABEL>R</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,ERP112513,Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danionine species,ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05,FCHNW2WBBXX_L6_HKZEBodsEAABRAAPEI-205_1.fq.gz FCHNW2WBBXX_L6_HKZEBodsEAABRAAPEI-205_2.fq.gz,fastq fastq,3622698000.0,18113490.0,E MTAB 7476:FCHNW2WBBXX L6 HKZEBodsEAABRAAPEI 205 ,0:100 1:100,A:988454110;C:825179148;G:816134465;T:992141776;N:788501,100,100,,,988454110,825179148,816134465,992141776,788501,ERX2986068,ERS2955656,ERA1674470,"University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive","University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive",2,0.9287,0.92856,0.14723,0.14721,0.6928,0.69469,0.4956,0.49616,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2018-12-05,Adult,Adult,Brain,Nervous System
9360,ERR2983448,ERX2986064,ERS2955652,ERP112513,PRJEB30097,RNA Seq of Danionine species,E-MTAB-7476,Transcriptome Analysis,Tissues specific transcriptomes of Danio rerio  Danio albolineatus and Danio aesculapii Brain  Liver and Gonads.,ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05,,Protocols: Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.,R1wB,SAMEA5147907,"University of Hamburg, Institute of Zoology, Molecular Animal Physiology",ENA FIRST PUBLIC:2018 12 05T17:02:27Z|ENA LAST UPDATE:2018 12 05T10:01:48Z|External Id:SAMEA5147907|INSDC center name:University of Hamburg  Institute of Zoology  Molecular Animal Physiology|INSDC first public:2018 12 05T17:02:27Z|INSDC last update:2018 12 05T10:01:48Z|INSDC status:public|Submitter Id:E MTAB 7476:R1wB|age:3|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|individual:1|organism part:brain|sample name:E MTAB 7476:R1wB|scientific name:Danio rerio|sex:female|strain:tu,,,,,,,,,Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danio9 species,E MTAB 7476:R1wB p,R1wB p,RNA Seq of Danionine species,Organs were sampled and snap frozen in liquid nitrogen   RNA was extracted using Trizol and standard silica membrane protocol  Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.,Experimental Factor: organism:Danio rerio|Experimental Factor: organism part:brain,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_LABEL>F</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_LABEL>R</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,ERP112513,Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danionine species,ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05,FCHNW2WBBXX_L6_HKZEBodsEAAARAAPEI-202_1.fq.gz FCHNW2WBBXX_L6_HKZEBodsEAAARAAPEI-202_2.fq.gz,fastq fastq,3345687800.0,16728439.0,E MTAB 7476:FCHNW2WBBXX L6 HKZEBodsEAAARAAPEI 202 ,0:100 1:100,A:879841532;C:789462135;G:789187239;T:886468300;N:728594,100,100,,,879841532,789462135,789187239,886468300,728594,ERX2986064,ERS2955652,ERA1674470,"University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive","University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive",2,0.96514,0.96503,0.0325,0.0326,0.78967,0.79204,0.25943,0.26683,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2018-12-05,Adult,Adult,Brain,Nervous System
10176,ERR5858457,ERX5504346,ERS6343450,ERP128749,PRJEB44676,scRNAseq of her4.3+ cells from lesioned and unlesioned zebrafish larvae spinal cord,E-MTAB-10390,Transcriptome Analysis,To analyse lesion induced gene regulation in progenitor cells at single cell resolution  we performed single cell RNAseq on FACS isolated her4.3:GFP progenitor cells from the spinal cord at 24 hours post lesion hpl post spinal injury at 3 dpf dpf  compared to age matched uninjured animals.,ENA FIRST PUBLIC:2021 05 24|ENA LAST UPDATE:2021 05 24,,Protocols: Trunks containing the lesion sites or equivalent site from unlesioned fish are collected and kept in PBS on ice.Incubate the trunks up to 300 in 1 mL of 1X Trypsin EDTA at 37C for 5 7 mins.Stop dissociation by adding FBS to a final concentration of 5%.Centrifuge at 200g for 7 mins.Discard Sups.Resuspend in 500 uL of PBS.Add the cell suspension into a 40 uM cell strainer.Centrifuge at 200g for 7 mins.Resuspend in the buffer for FACS PBS 5% FBS Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines.,Naive,SAMEA8658904,University Of Edinburgh,ENA first public:2021 05 24|ENA last update:2021 05 24|External Id:SAMEA8658904|INSDC center alias:UOE|INSDC center name:University Of Edinburgh|INSDC first public:2021 05 24T00:14:32Z|INSDC last update:2021 05 24T00:14:32Z|INSDC status:public|Submitter Id:E MTAB 10390:Naive|age:4|broker name:ArrayExpress|cell type:ependymo radial glial cell|common name:zebrafish|developmental stage:larval day 4|immunophenotype:Her4.3+ positive|organism part:spinal cord|sample name:E MTAB 10390:Naive|sex:mixed|strain:WIK,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; scRNAseq of her4.3+ cells from lesi1d and unlesi1d zebrafish larvae spinal cord,E MTAB 10390:Naive p,Naive p,scRNAseq of her4.3+ cells from lesioned and unlesioned zebrafish larvae spinal cord,Trunks containing the lesion sites or equivalent site from unlesioned fish are collected and kept in PBS on ice.Incubate the trunks up to 300 in 1 mL of 1X Trypsin EDTA at 37C for 5 7 mins.Stop dissociation by adding FBS to a final concentration of 5%.Centrifuge at 200g for 7 mins.Discard Sups.Resuspend in 500 uL of PBS.Add the cell suspension into a 40 uM cell strainer.Centrifuge at 200g for 7 mins.Resuspend in the buffer for FACS PBS 5% FBS Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines  Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines.,Experimental Factor: injury:n1,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP128749,Illumina NovaSeq 6000 paired end sequencing; scRNAseq of her4.3+ cells from lesioned and unlesioned zebrafish larvae spinal cord,ENA FIRST PUBLIC:2021 05 24|ENA LAST UPDATE:2021 05 24,Naive.bam,bam,44972162730.0,499690697.0,E MTAB 10390:Naive,0:90,A:13658826375;C:8733304343;G:9348137569;T:13228064343;N:3830100,90,,,,13658826375,8733304343,9348137569,13228064343,3830100,ERX5504346,ERS6343450,ERA4142789,University Of Edinburgh|European Nucleotide Archive,University Of Edinburgh|European Nucleotide Archive,1,0.89428,,0.32693,,0.75276,,0.5314,,90,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,United Kingdom,2021-05-24,Larval,Larval,Spinal Cord,Nervous System
10177,ERR5858456,ERX5504345,ERS6343449,ERP128749,PRJEB44676,scRNAseq of her4.3+ cells from lesioned and unlesioned zebrafish larvae spinal cord,E-MTAB-10390,Transcriptome Analysis,To analyse lesion induced gene regulation in progenitor cells at single cell resolution  we performed single cell RNAseq on FACS isolated her4.3:GFP progenitor cells from the spinal cord at 24 hours post lesion hpl post spinal injury at 3 dpf dpf  compared to age matched uninjured animals.,ENA FIRST PUBLIC:2021 05 24|ENA LAST UPDATE:2021 05 24,,Protocols: Trunks containing the lesion sites or equivalent site from unlesioned fish are collected and kept in PBS on ice.Incubate the trunks up to 300 in 1 mL of 1X Trypsin EDTA at 37C for 5 7 mins.Stop dissociation by adding FBS to a final concentration of 5%.Centrifuge at 200g for 7 mins.Discard Sups.Resuspend in 500 uL of PBS.Add the cell suspension into a 40 uM cell strainer.Centrifuge at 200g for 7 mins.Resuspend in the buffer for FACS PBS 5% FBS Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines.,Lesi1d,SAMEA8658903,University Of Edinburgh,ENA first public:2021 05 24|ENA last update:2021 05 24|External Id:SAMEA8658903|INSDC center alias:UOE|INSDC center name:University Of Edinburgh|INSDC first public:2021 05 24T00:14:32Z|INSDC last update:2021 05 24T00:14:32Z|INSDC status:public|Submitter Id:E MTAB 10390:Lesi1d|age:4|broker name:ArrayExpress|cell type:ependymo radial glial cell|common name:zebrafish|developmental stage:larval day 4|immunophenotype:Her4.3+ positive|injury:spinal injury lesion|organism part:spinal cord|sample name:E MTAB 10390:Lesi1d|sex:mixed|strain:WIK,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; scRNAseq of her4.3+ cells from lesi1d and unlesi1d zebrafish larvae spinal cord,E MTAB 10390:Lesioned p,Lesioned p,scRNAseq of her4.3+ cells from lesioned and unlesioned zebrafish larvae spinal cord,Trunks containing the lesion sites or equivalent site from unlesioned fish are collected and kept in PBS on ice.Incubate the trunks up to 300 in 1 mL of 1X Trypsin EDTA at 37C for 5 7 mins.Stop dissociation by adding FBS to a final concentration of 5%.Centrifuge at 200g for 7 mins.Discard Sups.Resuspend in 500 uL of PBS.Add the cell suspension into a 40 uM cell strainer.Centrifuge at 200g for 7 mins.Resuspend in the buffer for FACS PBS 5% FBS Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines  Following cell dissociation and FAC sorting  samples were processed on the 10X Chromium platform using 10X Single Cell three prime v3 chemistry following the manufacturer's guidelines.,Experimental Factor: injury:spinal injury lesion,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP128749,Illumina NovaSeq 6000 paired end sequencing; scRNAseq of her4.3+ cells from lesioned and unlesioned zebrafish larvae spinal cord,ENA FIRST PUBLIC:2021 05 24|ENA LAST UPDATE:2021 05 24,Lesioned.bam,bam,49902588630.0,554473207.0,E MTAB 10390:Lesioned,0:90,A:14713351178;C:10191139050;G:10897887675;T:14095967201;N:4243526,90,,,,14713351178,10191139050,10897887675,14095967201,4243526,ERX5504345,ERS6343449,ERA4142789,University Of Edinburgh|European Nucleotide Archive,University Of Edinburgh|European Nucleotide Archive,1,0.91197,,0.29137,,0.7568,,0.56523,,90,,B,,usable mapping rate,illumina,novaseq_era,unknown,poly_a,unknown,sc,single_cell_droplet,10x,,United Kingdom,2021-05-24,Larval,Larval,Spinal Cord,Nervous System
11046,ERR10476843,ERX9997186,ERS13672511,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120+LD stress,SAMEA111562655,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg LD 2|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg LD 2|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:198 283105,Sample 0256 122 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_122_FR_NSP_TR1_SL1_S51_L001_R1_001-pooled.fastq.gz 0256_122_FR_NSP_TR1_SL1_S51_L001_R2_001-pooled.fastq.gz,fastq fastq,3396097242.0,33295071.0,ena RUN TAB 09 11 2022 11:52:59:199 283106,0:51 1:51,A:937395652;C:754621322;G:762999709;T:941041776;N:38783,51,51,,,937395652,754621322,762999709,941041776,38783,ERX9997186,ERS13672511,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11047,ERR10476807,ERX9997150,ERS13672475,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day6,SAMEA111562619,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d6 1|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star pos d6 1|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:183 283033,Sample 0256 076 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_076_FR_NSP_TR1_SL1_S7_L001_R1_001-pooled.fastq.gz 0256_076_FR_NSP_TR1_SL1_S7_L001_R2_001-pooled.fastq.gz,fastq fastq,2974117224.0,29158012.0,ena RUN TAB 09 11 2022 11:52:59:183 283034,0:51 1:51,A:816102587;C:662715848;G:672777315;T:822487687;N:33787,51,51,,,816102587,662715848,672777315,822487687,33787,ERX9997150,ERS13672475,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11048,ERR10476845,ERX9997188,ERS13672513,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120+LD stress,SAMEA111562657,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg LD 4|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg LD 4|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:199 283109,Sample 0256 124 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_124_FR_NSP_TR1_SL1_S53_L001_R1_001-pooled.fastq.gz 0256_124_FR_NSP_TR1_SL1_S53_L001_R2_001-pooled.fastq.gz,fastq fastq,2964111330.0,29059915.0,ena RUN TAB 09 11 2022 11:52:59:199 283110,0:51 1:51,A:822335161;C:651614200;G:667534457;T:822593427;N:34085,51,51,,,822335161,651614200,667534457,822593427,34085,ERX9997188,ERS13672513,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11049,ERR10476819,ERX9997162,ERS13672487,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120,SAMEA111562631,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d120 3|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos d120 3|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:188 283057,Sample 0256 093 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_093_FR_NSP_TR1_SL1_S24_L001_R1_001-pooled.fastq.gz 0256_093_FR_NSP_TR1_SL1_S24_L001_R2_001-pooled.fastq.gz,fastq fastq,3376444086.0,33102393.0,ena RUN TAB 09 11 2022 11:52:59:188 283058,0:51 1:51,A:938993037;C:741979766;G:744362740;T:951069922;N:38621,51,51,,,938993037,741979766,744362740,951069922,38621,ERX9997162,ERS13672487,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11050,ERR10476814,ERX9997157,ERS13672482,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day13,SAMEA111562626,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d13 3|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star pos d13 3|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:186 283047,Sample 0256 083 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_083_FR_NSP_TR2_SL1_S14_L001_R1_001-pooled.fastq.gz 0256_083_FR_NSP_TR2_SL1_S14_L001_R2_001-pooled.fastq.gz,fastq fastq,5492667156.0,53849678.0,ena RUN TAB 09 11 2022 11:52:59:186 283048,0:51 1:51,A:1546610275;C:1178241230;G:1195797489;T:1571955787;N:62375,51,51,,,1546610275,1178241230,1195797489,1571955787,62375,ERX9997157,ERS13672482,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11051,ERR10476829,ERX9997172,ERS13672497,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day6,SAMEA111562641,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d6 3|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star neg d6 3|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:192 283077,Sample 0256 103 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_103_FR_NSP_TR1_SL1_S32_L001_R1_001-pooled.fastq.gz 0256_103_FR_NSP_TR1_SL1_S32_L001_R2_001-pooled.fastq.gz,fastq fastq,3120070248.0,30588924.0,ena RUN TAB 09 11 2022 11:52:59:193 283078,0:51 1:51,A:846274026;C:707353227;G:707836608;T:858570820;N:35567,51,51,,,846274026,707353227,707836608,858570820,35567,ERX9997172,ERS13672497,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11052,ERR10476798,ERX9997141,ERS13672466,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120,SAMEA111562610,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d120 2|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt d120 2|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:179 283015,Sample 0256 017 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_017_FR_NSP_TR1_SL1_S28_L001_R1_001-pooled.fastq.gz 0256_017_FR_NSP_TR1_SL1_S28_L001_R2_001-pooled.fastq.gz,fastq fastq,2721824508.0,26684554.0,ena RUN TAB 09 11 2022 11:52:59:179 283016,0:51 1:51,A:743316669;C:608895552;G:628493804;T:741025191;N:93292,51,51,,,743316669,608895552,628493804,741025191,93292,ERX9997141,ERS13672466,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11053,ERR10476796,ERX9997139,ERS13672464,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day13,SAMEA111562608,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d13 5|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:tu wt d13 5|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:178 283011,Sample 0256 010 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_010_FR_NSP_TR1_SL1_S21_L001_R1_001-pooled.fastq.gz 0256_010_FR_NSP_TR1_SL1_S21_L001_R2_001-pooled.fastq.gz,fastq fastq,2969687772.0,29114586.0,ena RUN TAB 09 11 2022 11:52:59:179 283012,0:51 1:51,A:762435544;C:713336460;G:731717998;T:762096042;N:101728,51,51,,,762435544,713336460,731717998,762096042,101728,ERX9997139,ERS13672464,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11054,ERR10476824,ERX9997167,ERS13672492,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120+LD stress,SAMEA111562636,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos LD 3|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos LD 3|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:190 283067,Sample 0256 098 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_098_FR_NSP_TR1_SL1_S25_L001_R1_001-pooled.fastq.gz 0256_098_FR_NSP_TR1_SL1_S25_L001_R2_001-pooled.fastq.gz,fastq fastq,2446755498.0,23987799.0,ena RUN TAB 09 11 2022 11:52:59:190 283068,0:51 1:51,A:690730956;C:529182577;G:529532770;T:697255685;N:53510,51,51,,,690730956,529182577,529532770,697255685,53510,ERX9997167,ERS13672492,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11055,ERR10476836,ERX9997179,ERS13672504,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day13,SAMEA111562648,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d13 5|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star neg d13 5|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283091,Sample 0256 110 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_110_FR_NSP_TR2_SL1_S39_L001_R1_001-pooled.fastq.gz 0256_110_FR_NSP_TR2_SL1_S39_L001_R2_001-pooled.fastq.gz,fastq fastq,2758547160.0,27044580.0,ena RUN TAB 09 11 2022 11:52:59:196 283092,0:51 1:51,A:732517446;C:640766914;G:643632251;T:741598802;N:31747,51,51,,,732517446,640766914,643632251,741598802,31747,ERX9997179,ERS13672504,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11056,ERR10476808,ERX9997151,ERS13672476,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day6,SAMEA111562620,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d6 2|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star pos d6 2|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:184 283035,Sample 0256 077 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_077_FR_NSP_TR1_SL1_S8_L001_R1_001-pooled.fastq.gz 0256_077_FR_NSP_TR1_SL1_S8_L001_R2_001-pooled.fastq.gz,fastq fastq,3595088328.0,35245964.0,ena RUN TAB 09 11 2022 11:52:59:184 283036,0:51 1:51,A:985480827;C:803117311;G:811895458;T:994553698;N:41034,51,51,,,985480827,803117311,811895458,994553698,41034,ERX9997151,ERS13672476,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11057,ERR10476818,ERX9997161,ERS13672486,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120,SAMEA111562630,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d120 2|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos d120 2|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:188 283055,Sample 0256 092 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_092_FR_NSP_TR1_SL1_S23_L001_R1_001-pooled.fastq.gz 0256_092_FR_NSP_TR1_SL1_S23_L001_R2_001-pooled.fastq.gz,fastq fastq,2928003330.0,28705915.0,ena RUN TAB 09 11 2022 11:52:59:188 283056,0:51 1:51,A:808470746;C:646721298;G:658265207;T:814512506;N:33573,51,51,,,808470746,646721298,658265207,814512506,33573,ERX9997161,ERS13672486,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11058,ERR10476827,ERX9997170,ERS13672495,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day6,SAMEA111562639,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d6 1|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star neg d6 1|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:192 283073,Sample 0256 101 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_101_FR_NSP_TR1_SL1_S30_L001_R1_001-pooled.fastq.gz 0256_101_FR_NSP_TR1_SL1_S30_L001_R2_001-pooled.fastq.gz,fastq fastq,3504125952.0,34354176.0,ena RUN TAB 09 11 2022 11:52:59:192 283074,0:51 1:51,A:947138693;C:797358353;G:798903844;T:960685108;N:39954,51,51,,,947138693,797358353,798903844,960685108,39954,ERX9997170,ERS13672495,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11059,ERR10476801,ERX9997144,ERS13672469,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120,SAMEA111562613,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d120 5|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt d120 5|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:181 283021,Sample 0256 020 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_020_FR_NSP_TR1_SL1_S31_L001_R1_001-pooled.fastq.gz 0256_020_FR_NSP_TR1_SL1_S31_L001_R2_001-pooled.fastq.gz,fastq fastq,3216177708.0,31531154.0,ena RUN TAB 09 11 2022 11:52:59:181 283022,0:51 1:51,A:880463840;C:718401986;G:738221226;T:878980905;N:109751,51,51,,,880463840,718401986,738221226,878980905,109751,ERX9997144,ERS13672469,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11060,ERR10476794,ERX9997137,ERS13672462,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day13,SAMEA111562606,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d13 3|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:tu wt d13 3|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:178 283007,Sample 0256 008 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_008_FR_NSP_TR1_SL1_S1_L001_R1_001-pooled.fastq.gz 0256_008_FR_NSP_TR1_SL1_S1_L001_R2_001-pooled.fastq.gz,fastq fastq,2659023618.0,26068859.0,ena RUN TAB 09 11 2022 11:52:59:178 283008,0:51 1:51,A:670947753;C:637136773;G:677570266;T:673338670;N:30156,51,51,,,670947753,637136773,677570266,673338670,30156,ERX9997137,ERS13672462,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11061,ERR10476833,ERX9997176,ERS13672501,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day13,SAMEA111562645,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d13 2|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star neg d13 2|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:194 283085,Sample 0256 107 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_107_FR_NSP_TR2_SL1_S36_L001_R1_001-pooled.fastq.gz 0256_107_FR_NSP_TR2_SL1_S36_L001_R2_001-pooled.fastq.gz,fastq fastq,3282322362.0,32179631.0,ena RUN TAB 09 11 2022 11:52:59:194 283086,0:51 1:51,A:898607442;C:734331926;G:739939203;T:909406172;N:37619,51,51,,,898607442,734331926,739939203,909406172,37619,ERX9997176,ERS13672501,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11062,ERR10476817,ERX9997160,ERS13672485,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120,SAMEA111562629,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d120 1|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos d120 1|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:187 283053,Sample 0256 091 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_091_FR_NSP_TR1_SL1_S22_L001_R1_001-pooled.fastq.gz 0256_091_FR_NSP_TR1_SL1_S22_L001_R2_001-pooled.fastq.gz,fastq fastq,3195884706.0,31332203.0,ena RUN TAB 09 11 2022 11:52:59:188 283054,0:51 1:51,A:874879226;C:712315108;G:728957349;T:879696554;N:36469,51,51,,,874879226,712315108,728957349,879696554,36469,ERX9997160,ERS13672485,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11063,ERR10476828,ERX9997171,ERS13672496,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day6,SAMEA111562640,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d6 2|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star neg d6 2|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:192 283075,Sample 0256 102 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_102_FR_NSP_TR1_SL1_S31_L001_R1_001-pooled.fastq.gz 0256_102_FR_NSP_TR1_SL1_S31_L001_R2_001-pooled.fastq.gz,fastq fastq,3969901404.0,38920602.0,ena RUN TAB 09 11 2022 11:52:59:192 283076,0:51 1:51,A:1079447747;C:894502841;G:908706945;T:1087198510;N:45361,51,51,,,1079447747,894502841,908706945,1087198510,45361,ERX9997171,ERS13672496,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11064,ERR10476821,ERX9997164,ERS13672489,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120,SAMEA111562633,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d120 5|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos d120 5|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:189 283061,Sample 0256 095 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_095_FR_NSP_TR1_SL1_S26_L001_R1_001-pooled.fastq.gz 0256_095_FR_NSP_TR1_SL1_S26_L001_R2_001-pooled.fastq.gz,fastq fastq,3213304572.0,31502986.0,ena RUN TAB 09 11 2022 11:52:59:189 283062,0:51 1:51,A:891513837;C:705036538;G:716947743;T:899770077;N:36377,51,51,,,891513837,705036538,716947743,899770077,36377,ERX9997164,ERS13672489,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11065,ERR10476823,ERX9997166,ERS13672491,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120+LD stress,SAMEA111562635,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos LD 2|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos LD 2|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:190 283065,Sample 0256 097 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_097_FR_NSP_TR1_SL1_S24_L001_R1_001-pooled.fastq.gz 0256_097_FR_NSP_TR1_SL1_S24_L001_R2_001-pooled.fastq.gz,fastq fastq,2641036224.0,25892512.0,ena RUN TAB 09 11 2022 11:52:59:190 283066,0:51 1:51,A:757894363;C:555348260;G:569783120;T:757953770;N:56711,51,51,,,757894363,555348260,569783120,757953770,56711,ERX9997166,ERS13672491,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11066,ERR10476806,ERX9997149,ERS13672474,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120+LD stress,SAMEA111562618,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt LD 5|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt LD 5|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:183 283031,Sample 0256 025 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_025_FR_NSP_TR1_SL1_S13_L001_R1_001-pooled.fastq.gz 0256_025_FR_NSP_TR1_SL1_S13_L001_R2_001-pooled.fastq.gz,fastq fastq,3305999418.0,32411759.0,ena RUN TAB 09 11 2022 11:52:59:183 283032,0:51 1:51,A:895024301;C:741182319;G:782231299;T:887499120;N:62379,51,51,,,895024301,741182319,782231299,887499120,62379,ERX9997149,ERS13672474,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11067,ERR10476846,ERX9997189,ERS13672514,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120+LD stress,SAMEA111562658,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg LD 5|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg LD 5|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:200 283111,Sample 0256 125 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_125_FR_NSP_TR1_SL1_S54_L001_R1_001-pooled.fastq.gz 0256_125_FR_NSP_TR1_SL1_S54_L001_R2_001-pooled.fastq.gz,fastq fastq,3282595008.0,32182304.0,ena RUN TAB 09 11 2022 11:52:59:200 283112,0:51 1:51,A:911207196;C:721152291;G:734350131;T:915848066;N:37324,51,51,,,911207196,721152291,734350131,915848066,37324,ERX9997189,ERS13672514,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11068,ERR10476790,ERX9997133,ERS13672458,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day6,SAMEA111562602,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d6 4|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:tu wt d6 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:176 282999,Sample 0256 004 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_004_FR_NSP_TR1_SL1_S16_L001_R1_001-pooled.fastq.gz 0256_004_FR_NSP_TR1_SL1_S16_L001_R2_001-pooled.fastq.gz,fastq fastq,2693489520.0,26406760.0,ena RUN TAB 09 11 2022 11:52:59:176 283000,0:51 1:51,A:701762127;C:639663261;G:643729664;T:708242984;N:91484,51,51,,,701762127,639663261,643729664,708242984,91484,ERX9997133,ERS13672458,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11069,ERR10476797,ERX9997140,ERS13672465,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120,SAMEA111562609,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d120 1|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt d120 1|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:179 283013,Sample 0256 016 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_016_FR_NSP_TR1_SL1_S27_L001_R1_001-pooled.fastq.gz 0256_016_FR_NSP_TR1_SL1_S27_L001_R2_001-pooled.fastq.gz,fastq fastq,3238524072.0,31750236.0,ena RUN TAB 09 11 2022 11:52:59:179 283014,0:51 1:51,A:879431740;C:727298145;G:750466237;T:881218913;N:109037,51,51,,,879431740,727298145,750466237,881218913,109037,ERX9997140,ERS13672465,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11070,ERR10476791,ERX9997134,ERS13672459,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day6,SAMEA111562603,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d6 5|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:tu wt d6 5|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:176 283001,Sample 0256 005 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_005_FR_NSP_TR1_SL1_S17_L001_R1_001-pooled.fastq.gz 0256_005_FR_NSP_TR1_SL1_S17_L001_R2_001-pooled.fastq.gz,fastq fastq,2904430620.0,28474810.0,ena RUN TAB 09 11 2022 11:52:59:176 283002,0:51 1:51,A:777892611;C:666758312;G:672026589;T:787654140;N:98968,51,51,,,777892611,666758312,672026589,787654140,98968,ERX9997134,ERS13672459,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11071,ERR10476837,ERX9997180,ERS13672505,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120,SAMEA111562649,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d120 1|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg d120 1|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:196 283093,Sample 0256 116 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_116_FR_NSP_TR1_SL1_S45_L001_R1_001-pooled.fastq.gz 0256_116_FR_NSP_TR1_SL1_S45_L001_R2_001-pooled.fastq.gz,fastq fastq,3223186638.0,31599869.0,ena RUN TAB 09 11 2022 11:52:59:196 283094,0:51 1:51,A:887593868;C:714750043;G:727286570;T:893518987;N:37170,51,51,,,887593868,714750043,727286570,893518987,37170,ERX9997180,ERS13672505,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11072,ERR10476844,ERX9997187,ERS13672512,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120+LD stress,SAMEA111562656,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg LD 3|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg LD 3|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:199 283107,Sample 0256 123 FR NSP TR1 SL2,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_123_FR_NSP_TR1_SL2_S52_L001_R1_001-pooled.fastq.gz 0256_123_FR_NSP_TR1_SL2_S52_L001_R2_001-pooled.fastq.gz,fastq fastq,3363995598.0,32980349.0,ena RUN TAB 09 11 2022 11:52:59:199 283108,0:51 1:51,A:911801682;C:754249392;G:775610326;T:922295915;N:38283,51,51,,,911801682,754249392,775610326,922295915,38283,ERX9997187,ERS13672512,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11073,ERR10476841,ERX9997184,ERS13672509,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120,SAMEA111562653,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d120 5|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg d120 5|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:198 283101,Sample 0256 120 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_120_FR_NSP_TR1_SL1_S49_L001_R1_001-pooled.fastq.gz 0256_120_FR_NSP_TR1_SL1_S49_L001_R2_001-pooled.fastq.gz,fastq fastq,3183097374.0,31206837.0,ena RUN TAB 09 11 2022 11:52:59:198 283102,0:51 1:51,A:877463150;C:706812545;G:717353252;T:881432047;N:36380,51,51,,,877463150,706812545,717353252,881432047,36380,ERX9997184,ERS13672509,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11074,ERR10476788,ERX9997131,ERS13672456,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day6,SAMEA111562600,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d6 2|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:tu wt d6 2|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:175 282995,Sample 0256 002 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_002_FR_NSP_TR1_SL1_S14_L001_R1_001-pooled.fastq.gz 0256_002_FR_NSP_TR1_SL1_S14_L001_R2_001-pooled.fastq.gz,fastq fastq,2385303456.0,23385328.0,ena RUN TAB 09 11 2022 11:52:59:175 282996,0:51 1:51,A:620601269;C:567608030;G:568555174;T:628457831;N:81152,51,51,,,620601269,567608030,568555174,628457831,81152,ERX9997131,ERS13672456,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11075,ERR10476825,ERX9997168,ERS13672493,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120+LD stress,SAMEA111562637,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos LD 4|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos LD 4|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:191 283069,Sample 0256 099 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_099_FR_NSP_TR1_SL1_S28_L001_R1_001-pooled.fastq.gz 0256_099_FR_NSP_TR1_SL1_S28_L001_R2_001-pooled.fastq.gz,fastq fastq,3076257270.0,30159385.0,ena RUN TAB 09 11 2022 11:52:59:191 283070,0:51 1:51,A:873464149;C:655660863;G:671402896;T:875694442;N:34920,51,51,,,873464149,655660863,671402896,875694442,34920,ERX9997168,ERS13672493,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11076,ERR10476842,ERX9997185,ERS13672510,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120+LD stress,SAMEA111562654,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg LD 1|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg LD 1|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:198 283103,Sample 0256 121 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_121_FR_NSP_TR1_SL1_S50_L001_R1_001-pooled.fastq.gz 0256_121_FR_NSP_TR1_SL1_S50_L001_R2_001-pooled.fastq.gz,fastq fastq,2812259034.0,27571167.0,ena RUN TAB 09 11 2022 11:52:59:198 283104,0:51 1:51,A:777159410;C:623161405;G:635673358;T:776232920;N:31941,51,51,,,777159410,623161405,635673358,776232920,31941,ERX9997185,ERS13672510,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11077,ERR10476816,ERX9997159,ERS13672484,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day13,SAMEA111562628,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d13 5|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star pos d13 5|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:187 283051,Sample 0256 085 FR NSP TRP SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_085_FR_NSP_TRP_SL1_S16_L001_R1_001-pooled.fastq.gz 0256_085_FR_NSP_TRP_SL1_S16_L001_R2_001-pooled.fastq.gz,fastq fastq,3264856596.0,32008398.0,ena RUN TAB 09 11 2022 11:52:59:187 283052,0:51 1:51,A:908889213;C:708892816;G:727180747;T:919857088;N:36732,51,51,,,908889213,708892816,727180747,919857088,36732,ERX9997159,ERS13672484,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11078,ERR10476813,ERX9997156,ERS13672481,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day13,SAMEA111562625,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d13 2|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star pos d13 2|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:186 283045,Sample 0256 082 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_082_FR_NSP_TR2_SL1_S13_L001_R1_001-pooled.fastq.gz 0256_082_FR_NSP_TR2_SL1_S13_L001_R2_001-pooled.fastq.gz,fastq fastq,3037654248.0,29780924.0,ena RUN TAB 09 11 2022 11:52:59:186 283046,0:51 1:51,A:859112641;C:645943863;G:660257800;T:872305592;N:34352,51,51,,,859112641,645943863,660257800,872305592,34352,ERX9997156,ERS13672481,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11079,ERR10476832,ERX9997175,ERS13672500,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day13,SAMEA111562644,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d13 1|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star neg d13 1|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:194 283083,Sample 0256 106 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_106_FR_NSP_TR1_SL1_S35_L001_R1_001-pooled.fastq.gz 0256_106_FR_NSP_TR1_SL1_S35_L001_R2_001-pooled.fastq.gz,fastq fastq,2761703040.0,27075520.0,ena RUN TAB 09 11 2022 11:52:59:194 283084,0:51 1:51,A:761065450;C:610246142;G:622228689;T:768131440;N:31319,51,51,,,761065450,610246142,622228689,768131440,31319,ERX9997175,ERS13672500,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11080,ERR10476810,ERX9997153,ERS13672478,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day6,SAMEA111562622,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d6 4|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star pos d6 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:184 283039,Sample 0256 079 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_079_FR_NSP_TR1_SL1_S10_L001_R1_001-pooled.fastq.gz 0256_079_FR_NSP_TR1_SL1_S10_L001_R2_001-pooled.fastq.gz,fastq fastq,2745379674.0,26915487.0,ena RUN TAB 09 11 2022 11:52:59:185 283040,0:51 1:51,A:762974242;C:602287296;G:611894421;T:768192503;N:31212,51,51,,,762974242,602287296,611894421,768192503,31212,ERX9997153,ERS13672478,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11081,ERR10476811,ERX9997154,ERS13672479,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day6,SAMEA111562623,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d6 5|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star pos d6 5|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:185 283041,Sample 0256 080 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_080_FR_NSP_TR1_SL1_S11_L001_R1_001-pooled.fastq.gz 0256_080_FR_NSP_TR1_SL1_S11_L001_R2_001-pooled.fastq.gz,fastq fastq,3212151870.0,31491685.0,ena RUN TAB 09 11 2022 11:52:59:185 283042,0:51 1:51,A:890500591;C:706313900;G:715518225;T:899782352;N:36802,51,51,,,890500591,706313900,715518225,899782352,36802,ERX9997154,ERS13672479,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11082,ERR10476826,ERX9997169,ERS13672494,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120+LD stress,SAMEA111562638,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos LD 5|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos LD 5|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:191 283071,Sample 0256 100 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_100_FR_NSP_TR1_SL1_S29_L001_R1_001-pooled.fastq.gz 0256_100_FR_NSP_TR1_SL1_S29_L001_R2_001-pooled.fastq.gz,fastq fastq,3578369100.0,35082050.0,ena RUN TAB 09 11 2022 11:52:59:191 283072,0:51 1:51,A:1020283131;C:761534114;G:768445361;T:1028065987;N:40507,51,51,,,1020283131,761534114,768445361,1028065987,40507,ERX9997169,ERS13672494,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11083,ERR10476802,ERX9997145,ERS13672470,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120+LD stress,SAMEA111562614,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt LD 1|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt LD 1|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:181 283023,Sample 0256 021 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_021_FR_NSP_TR1_SL1_S32_L001_R1_001-pooled.fastq.gz 0256_021_FR_NSP_TR1_SL1_S32_L001_R2_001-pooled.fastq.gz,fastq fastq,2990267394.0,29316347.0,ena RUN TAB 09 11 2022 11:52:59:181 283024,0:51 1:51,A:821947579;C:664213850;G:685635879;T:818367947;N:102139,51,51,,,821947579,664213850,685635879,818367947,102139,ERX9997145,ERS13672470,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11084,ERR10476799,ERX9997142,ERS13672467,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120,SAMEA111562611,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d120 3|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt d120 3|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:180 283017,Sample 0256 018 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_018_FR_NSP_TR1_SL1_S29_L001_R1_001-pooled.fastq.gz 0256_018_FR_NSP_TR1_SL1_S29_L001_R2_001-pooled.fastq.gz,fastq fastq,2807137614.0,27520957.0,ena RUN TAB 09 11 2022 11:52:59:180 283018,0:51 1:51,A:773248982;C:621078395;G:638119915;T:774593844;N:96478,51,51,,,773248982,621078395,638119915,774593844,96478,ERX9997142,ERS13672467,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11085,ERR10476809,ERX9997152,ERS13672477,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day6,SAMEA111562621,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d6 3|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star pos d6 3|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:184 283037,Sample 0256 078 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_078_FR_NSP_TR1_SL1_S9_L001_R1_001-pooled.fastq.gz 0256_078_FR_NSP_TR1_SL1_S9_L001_R2_001-pooled.fastq.gz,fastq fastq,3412655106.0,33457403.0,ena RUN TAB 09 11 2022 11:52:59:184 283038,0:51 1:51,A:942783320;C:753155142;G:767154692;T:949522969;N:38983,51,51,,,942783320,753155142,767154692,949522969,38983,ERX9997152,ERS13672477,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11086,ERR10476789,ERX9997132,ERS13672457,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day6,SAMEA111562601,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d6 3|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:tu wt d6 3|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:175 282997,Sample 0256 003 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_003_FR_NSP_TR1_SL1_S15_L001_R1_001-pooled.fastq.gz 0256_003_FR_NSP_TR1_SL1_S15_L001_R2_001-pooled.fastq.gz,fastq fastq,2999816634.0,29409967.0,ena RUN TAB 09 11 2022 11:52:59:176 282998,0:51 1:51,A:771170539;C:720448182;G:729961101;T:778133283;N:103529,51,51,,,771170539,720448182,729961101,778133283,103529,ERX9997132,ERS13672457,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11087,ERR10476830,ERX9997173,ERS13672498,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day6,SAMEA111562642,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d6 4|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star neg d6 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:193 283079,Sample 0256 104 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_104_FR_NSP_TR1_SL1_S33_L001_R1_001-pooled.fastq.gz 0256_104_FR_NSP_TR1_SL1_S33_L001_R2_001-pooled.fastq.gz,fastq fastq,2943756210.0,28860355.0,ena RUN TAB 09 11 2022 11:52:59:193 283080,0:51 1:51,A:806343784;C:657990854;G:663721905;T:815666113;N:33554,51,51,,,806343784,657990854,663721905,815666113,33554,ERX9997173,ERS13672498,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11088,ERR10476835,ERX9997178,ERS13672503,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day13,SAMEA111562647,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d13 4|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star neg d13 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283089,Sample 0256 109 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_109_FR_NSP_TR2_SL1_S38_L001_R1_001-pooled.fastq.gz 0256_109_FR_NSP_TR2_SL1_S38_L001_R2_001-pooled.fastq.gz,fastq fastq,3406677396.0,33398798.0,ena RUN TAB 09 11 2022 11:52:59:195 283090,0:51 1:51,A:928579532;C:768636951;G:771636154;T:937786376;N:38383,51,51,,,928579532,768636951,771636154,937786376,38383,ERX9997178,ERS13672503,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11089,ERR10476820,ERX9997163,ERS13672488,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120,SAMEA111562632,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d120 4|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos d120 4|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:189 283059,Sample 0256 094 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_094_FR_NSP_TR1_SL1_S25_L001_R1_001-pooled.fastq.gz 0256_094_FR_NSP_TR1_SL1_S25_L001_R2_001-pooled.fastq.gz,fastq fastq,3067693350.0,30075425.0,ena RUN TAB 09 11 2022 11:52:59:189 283060,0:51 1:51,A:855716246;C:671014617;G:674396566;T:866531062;N:34859,51,51,,,855716246,671014617,674396566,866531062,34859,ERX9997163,ERS13672488,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11090,ERR10476787,ERX9997130,ERS13672455,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day6,SAMEA111562599,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d6 1|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:tu wt d6 1|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:174 282993,Sample 0256 001 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_001_FR_NSP_TR1_SL1_S13_L001_R1_001-pooled.fastq.gz 0256_001_FR_NSP_TR1_SL1_S13_L001_R2_001-pooled.fastq.gz,fastq fastq,2739613002.0,26858951.0,ena RUN TAB 09 11 2022 11:52:59:174 282994,0:51 1:51,A:716316048;C:647929778;G:649844718;T:725429229;N:93229,51,51,,,716316048,647929778,649844718,725429229,93229,ERX9997130,ERS13672455,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11091,ERR10476812,ERX9997155,ERS13672480,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day13,SAMEA111562624,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d13 1|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star pos d13 1|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:185 283043,Sample 0256 081 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_081_FR_NSP_TR2_SL1_S12_L001_R1_001-pooled.fastq.gz 0256_081_FR_NSP_TR2_SL1_S12_L001_R2_001-pooled.fastq.gz,fastq fastq,2976324300.0,29179650.0,ena RUN TAB 09 11 2022 11:52:59:185 283044,0:51 1:51,A:831817738;C:637392987;G:662609648;T:844470228;N:33699,51,51,,,831817738,637392987,662609648,844470228,33699,ERX9997155,ERS13672480,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11092,ERR10476800,ERX9997143,ERS13672468,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120,SAMEA111562612,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d120 4|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt d120 4|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:180 283019,Sample 0256 019 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_019_FR_NSP_TR1_SL1_S30_L001_R1_001-pooled.fastq.gz 0256_019_FR_NSP_TR1_SL1_S30_L001_R2_001-pooled.fastq.gz,fastq fastq,2911008498.0,28539299.0,ena RUN TAB 09 11 2022 11:52:59:180 283020,0:51 1:51,A:795092837;C:651247701;G:672040156;T:792529007;N:98797,51,51,,,795092837,651247701,672040156,792529007,98797,ERX9997143,ERS13672468,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11093,ERR10476840,ERX9997183,ERS13672508,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120,SAMEA111562652,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d120 4|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg d120 4|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:197 283099,Sample 0256 119 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_119_FR_NSP_TR1_SL1_S48_L001_R1_001-pooled.fastq.gz 0256_119_FR_NSP_TR1_SL1_S48_L001_R2_001-pooled.fastq.gz,fastq fastq,3396382740.0,33297870.0,ena RUN TAB 09 11 2022 11:52:59:197 283100,0:51 1:51,A:937800414;C:753433067;G:760774470;T:944336000;N:38789,51,51,,,937800414,753433067,760774470,944336000,38789,ERX9997183,ERS13672508,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11094,ERR10476831,ERX9997174,ERS13672499,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day6,SAMEA111562643,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d6 5|collection date:2019 12|common name:zebrafish|dev stage:6 dpf|geographic location country and/or sea:Germany|sample name:star neg d6 5|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:193 283081,Sample 0256 105 FR NSP TR1 SL2,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_105_FR_NSP_TR1_SL2_S34_L001_R1_001-pooled.fastq.gz 0256_105_FR_NSP_TR1_SL2_S34_L001_R2_001-pooled.fastq.gz,fastq fastq,3118607160.0,30574580.0,ena RUN TAB 09 11 2022 11:52:59:193 283082,0:51 1:51,A:849321742;C:701271960;G:711995793;T:855982293;N:35372,51,51,,,849321742,701271960,711995793,855982293,35372,ERX9997174,ERS13672499,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11095,ERR10476793,ERX9997136,ERS13672461,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day13,SAMEA111562605,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d13 2|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:tu wt d13 2|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:177 283005,Sample 0256 007 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_007_FR_NSP_TR1_SL1_S19_L001_R1_001-pooled.fastq.gz 0256_007_FR_NSP_TR1_SL1_S19_L001_R2_001-pooled.fastq.gz,fastq fastq,2806322430.0,27512965.0,ena RUN TAB 09 11 2022 11:52:59:177 283006,0:51 1:51,A:715863946;C:680964497;G:693755104;T:715642850;N:96033,51,51,,,715863946,680964497,693755104,715642850,96033,ERX9997136,ERS13672461,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11096,ERR10476805,ERX9997148,ERS13672473,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120+LD stress,SAMEA111562617,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt LD 4|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt LD 4|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:182 283029,Sample 0256 024 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_024_FR_NSP_TR1_SL1_S12_L001_R1_001-pooled.fastq.gz 0256_024_FR_NSP_TR1_SL1_S12_L001_R2_001-pooled.fastq.gz,fastq fastq,3257430894.0,31935597.0,ena RUN TAB 09 11 2022 11:52:59:182 283030,0:51 1:51,A:891216584;C:725738391;G:748780264;T:891634510;N:61145,51,51,,,891216584,725738391,748780264,891634510,61145,ERX9997148,ERS13672473,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11097,ERR10476838,ERX9997181,ERS13672506,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120,SAMEA111562650,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d120 2|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg d120 2|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:196 283095,Sample 0256 117 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_117_FR_NSP_TR1_SL1_S46_L001_R1_001-pooled.fastq.gz 0256_117_FR_NSP_TR1_SL1_S46_L001_R2_001-pooled.fastq.gz,fastq fastq,2232046722.0,21882811.0,ena RUN TAB 09 11 2022 11:52:59:197 283096,0:51 1:51,A:610338276;C:499704184;G:506646198;T:615332999;N:25065,51,51,,,610338276,499704184,506646198,615332999,25065,ERX9997181,ERS13672506,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11098,ERR10476804,ERX9997147,ERS13672472,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120+LD stress,SAMEA111562616,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt LD 3|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt LD 3|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:182 283027,Sample 0256 023 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_023_FR_NSP_TR1_SL1_S11_L001_R1_001-pooled.fastq.gz 0256_023_FR_NSP_TR1_SL1_S11_L001_R2_001-pooled.fastq.gz,fastq fastq,3298157352.0,32334876.0,ena RUN TAB 09 11 2022 11:52:59:182 283028,0:51 1:51,A:902806100;C:734844717;G:760378732;T:900065838;N:61965,51,51,,,902806100,734844717,760378732,900065838,61965,ERX9997147,ERS13672472,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11099,ERR10476803,ERX9997146,ERS13672471,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 3 brains,wildtype whole brain day120+LD stress,SAMEA111562615,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt LD 2|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:tu wt LD 2|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:181 283025,Sample 0256 022 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_022_FR_NSP_TR1_SL1_S10_L001_R1_001-pooled.fastq.gz 0256_022_FR_NSP_TR1_SL1_S10_L001_R2_001-pooled.fastq.gz,fastq fastq,2888740368.0,28320984.0,ena RUN TAB 09 11 2022 11:52:59:182 283026,0:51 1:51,A:785142578;C:649687941;G:672470690;T:781385035;N:54124,51,51,,,785142578,649687941,672470690,781385035,54124,ERX9997146,ERS13672471,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11100,ERR10476839,ERX9997182,ERS13672507,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 3 brains,star:bPAC /  whole brain day120,SAMEA111562651,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d120 3|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star neg d120 3|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:197 283097,Sample 0256 118 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_118_FR_NSP_TR1_SL1_S47_L001_R1_001-pooled.fastq.gz 0256_118_FR_NSP_TR1_SL1_S47_L001_R2_001-pooled.fastq.gz,fastq fastq,3328515000.0,32632500.0,ena RUN TAB 09 11 2022 11:52:59:197 283098,0:51 1:51,A:918123149;C:737970097;G:747451118;T:924933058;N:37578,51,51,,,918123149,737970097,747451118,924933058,37578,ERX9997182,ERS13672507,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11101,ERR10476795,ERX9997138,ERS13672463,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day13,SAMEA111562607,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d13 4|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:tu wt d13 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:178 283009,Sample 0256 009 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_009_FR_NSP_TR1_SL1_S20_L001_R1_001-pooled.fastq.gz 0256_009_FR_NSP_TR1_SL1_S20_L001_R2_001-pooled.fastq.gz,fastq fastq,2524225518.0,24747309.0,ena RUN TAB 09 11 2022 11:52:59:178 283010,0:51 1:51,A:643453173;C:607310608;G:630496995;T:642879275;N:85467,51,51,,,643453173,607310608,630496995,642879275,85467,ERX9997138,ERS13672463,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11102,ERR10476792,ERX9997135,ERS13672460,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,wildtype whole brain  pooled 15 brains,wildtype whole brain day13,SAMEA111562604,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:tu wt d13 1|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:tu wt d13 1|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:177 283003,Sample 0256 006 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_006_FR_NSP_TR1_SL1_S18_L001_R1_001-pooled.fastq.gz 0256_006_FR_NSP_TR1_SL1_S18_L001_R2_001-pooled.fastq.gz,fastq fastq,2436931062.0,23891481.0,ena RUN TAB 09 11 2022 11:52:59:177 283004,0:51 1:51,A:622664838;C:583373590;G:613974641;T:616835192;N:82801,51,51,,,622664838,583373590,613974641,616835192,82801,ERX9997135,ERS13672460,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11103,ERR10476822,ERX9997165,ERS13672490,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 3 brains,star:bPAC+/  whole brain day120+LD stress,SAMEA111562634,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos LD 1|collection date:2019 12|common name:zebrafish|dev stage:120 dpf|geographic location country and/or sea:Germany|sample name:star pos LD 1|scientific name:Danio rerio|sex:female|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:189 283063,Sample 0256 096 FR NSP TR1 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_096_FR_NSP_TR1_SL1_S27_L001_R1_001-pooled.fastq.gz 0256_096_FR_NSP_TR1_SL1_S27_L001_R2_001-pooled.fastq.gz,fastq fastq,2812065336.0,27569268.0,ena RUN TAB 09 11 2022 11:52:59:190 283064,0:51 1:51,A:773228522;C:624515080;G:635774579;T:778515067;N:32088,51,51,,,773228522,624515080,635774579,778515067,32088,ERX9997165,ERS13672490,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Adult,Adult,Brain,Nervous System
11104,ERR10476834,ERX9997177,ERS13672502,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC /  whole brain  pooled 15 brains,star:bPAC /  whole brain day13,SAMEA111562646,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star neg d13 3|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star neg d13 3|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283087,Sample 0256 108 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_108_FR_NSP_TR2_SL1_S37_L001_R1_001-pooled.fastq.gz 0256_108_FR_NSP_TR2_SL1_S37_L001_R2_001-pooled.fastq.gz,fastq fastq,3252093438.0,31883269.0,ena RUN TAB 09 11 2022 11:52:59:195 283088,0:51 1:51,A:901696576;C:701023909;G:729587564;T:919748293;N:37096,51,51,,,901696576,701023909,729587564,919748293,37096,ERX9997177,ERS13672502,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
11105,ERR10476815,ERX9997158,ERS13672483,ERP138527,PRJEB53713,Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish,f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e,Other,Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6  13  120 dpf dpf  and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female.  Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/  and  /  were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz  Germany. Paired end TruSeq Stranded mRNA libraries Illumina  CA  USA were constructed  and over 20M of 50 bp reads/sample were sequenced.  Oxford Nanopore sequencing was used for DNA methylation identification.  These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,,star:bPAC+/  whole brain  pooled 15 brains,star:bPAC+/  whole brain day13,SAMEA111562627,"Living Systems Institute, University of Exeter",INSDC center name:Living Systems Institute  University of Exeter|Submitter Id:star pos d13 4|collection date:2019 12|common name:zebrafish|dev stage:13 dpf|geographic location country and/or sea:Germany|sample name:star pos d13 4|scientific name:Danio rerio|sex:N/A|strain:Tübingen|tissue type:brain,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT TAB 09 11 2022 11:52:59:186 283049,Sample 0256 084 FR NSP TR2 SL1,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP138527,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2024 02 06|ENA LAST UPDATE:2024 02 06,0256_084_FR_NSP_TR2_SL1_S15_L001_R1_001-pooled.fastq.gz 0256_084_FR_NSP_TR2_SL1_S15_L001_R2_001-pooled.fastq.gz,fastq fastq,4118541720.0,40377860.0,ena RUN TAB 09 11 2022 11:52:59:187 283050,0:51 1:51,A:1136484689;C:909656648;G:924700451;T:1147653128;N:46804,51,51,,,1136484689,909656648,924700451,1147653128,46804,ERX9997158,ERS13672483,ERA18581410,"living systems institute, university of exeter|European Nucleotide Archive","living systems institute, university of exeter|European Nucleotide Archive",,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,full_length,poly_a,trueseq,bulk,unknown,unknown,,United Kingdom,2024-02-06,Larval,Larval,Brain,Nervous System
26536,SRR26130973,SRX21844394,SRS18942411,SRP462307,PRJNA1019490,Single Cell RNA seq of Zebrafish Hypothalamus,PRJNA1019490,Other,Brain nuclei are traditionally defined by their anatomy  activity  and expression of specific markers. The hypothalamus contains discrete neuronal populations that coordinate fundamental behavioral functions  ranging from sleep and wakefulness to feeding  stress  and reward in all vertebrates.,,,,,10X49 2,,breed:NA|age:Adult|collection date:2021|geo loc name:Israel|sex:not applicable|tissue:Brain Hypothalamus|sample type:single cell 6|BioSampleModel:Model organism or animal,,,,,,,,,SC ZF Hypo6,10X49 2,10X49 2,we worked swiftly with cold  well oxygenated solutions  optimizing Papain incubation times for tissue age and brain region. We used caution with Ca2+ and Mg2+ in aCSF to avoid RNA extraction/RT interference  favoring Ca2+/Mg2+ free aCSF if not diluted downstream. Modified aCSF had specific component concentrations  and our materials included essential equipment and anesthesia. We prepared aCSF from an 8x stock with adjusted CaCl2 and MgSO4 concentrations  kept it fresh  and oxygenated it. The zebrafish procedure began with lethal anesthesia  brain dissection in ice cold aCSF  embedding in 1.5% gel  and vibratome sectioning. Tissue was dissociated in the Papain vial  triturated  filtered  and washed  followed by centrifugation. The pellet was resuspended in aCSF with DNase  assessed for cell viability  counted  and diluted for use.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP462307,,,10X49_2_S5_L001_R1_001.fastq.gz 10X49_2_S5_L001_R2_001.fastq.gz 10X49_2_S5_L002_R1_001.fastq.gz 10X49_2_S5_L002_R2_001.fastq.gz 10X49_2_S5_L003_R1_001.fastq.gz 10X49_2_S5_L003_R2_001.fastq.gz 10X49_2_S5_L004_R1_001.fastq.gz 10X49_2_S5_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,3126113844.0,37215641.0,10X49 2 S5 L001 R1 001.fastq.gz,0:28 1:56,A:898881980;C:657306128;G:664563758;T:905262774;N:99204,28,56,,,898881980,657306128,664563758,905262774,99204,SRX21844394,SRS18942411,SRA1717104,Technion - Israel Institute of Technology|Neuroscince,Technion - Israel Institute of Technology,2,0.01241,0.88203,0.00542,0.35268,0.98129,0.7586,0.40274,0.5074,28,56,T,B,sc-like readlen,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_generic,generic-scrnaseq-only,,Israel,2023-09-21,Adult,Adult,Brain,Nervous System
26537,SRR26130974,SRX21844393,SRS18942407,SRP462307,PRJNA1019490,Single Cell RNA seq of Zebrafish Hypothalamus,PRJNA1019490,Other,Brain nuclei are traditionally defined by their anatomy  activity  and expression of specific markers. The hypothalamus contains discrete neuronal populations that coordinate fundamental behavioral functions  ranging from sleep and wakefulness to feeding  stress  and reward in all vertebrates.,,,,,10X49 1,,breed:NA|age:Adult|collection date:2021|geo loc name:Israel|sex:not applicable|tissue:Brain Hypothalamus|sample type:single cell 5|BioSampleModel:Model organism or animal,,,,,,,,,SC ZF Hypo5,10X49 1,10X49 1,we worked swiftly with cold  well oxygenated solutions  optimizing Papain incubation times for tissue age and brain region. We used caution with Ca2+ and Mg2+ in aCSF to avoid RNA extraction/RT interference  favoring Ca2+/Mg2+ free aCSF if not diluted downstream. Modified aCSF had specific component concentrations  and our materials included essential equipment and anesthesia. We prepared aCSF from an 8x stock with adjusted CaCl2 and MgSO4 concentrations  kept it fresh  and oxygenated it. The zebrafish procedure began with lethal anesthesia  brain dissection in ice cold aCSF  embedding in 1.5% gel  and vibratome sectioning. Tissue was dissociated in the Papain vial  triturated  filtered  and washed  followed by centrifugation. The pellet was resuspended in aCSF with DNase  assessed for cell viability  counted  and diluted for use.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP462307,,,10X49_1_S4_L001_R1_001.fastq.gz 10X49_1_S4_L001_R2_001.fastq.gz 10X49_1_S4_L002_R1_001.fastq.gz 10X49_1_S4_L002_R2_001.fastq.gz 10X49_1_S4_L003_R1_001.fastq.gz 10X49_1_S4_L003_R2_001.fastq.gz 10X49_1_S4_L004_R1_001.fastq.gz 10X49_1_S4_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,3315364752.0,39468628.0,10X49 1 S4 L001 R1 001.fastq.gz,0:28 1:56,A:957164498;C:690985782;G:704099796;T:963009918;N:104758,28,56,,,957164498,690985782,704099796,963009918,104758,SRX21844393,SRS18942407,SRA1717104,Technion - Israel Institute of Technology|Neuroscince,Technion - Israel Institute of Technology,2,0.0143,0.88325,0.00601,0.35854,0.97816,0.75868,0.4158,0.50825,28,56,T,B,sc-like readlen,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_generic,generic-scrnaseq-only,,Israel,2023-09-21,Adult,Adult,Brain,Nervous System
26538,SRR26130975,SRX21844392,SRS18942399,SRP462307,PRJNA1019490,Single Cell RNA seq of Zebrafish Hypothalamus,PRJNA1019490,Other,Brain nuclei are traditionally defined by their anatomy  activity  and expression of specific markers. The hypothalamus contains discrete neuronal populations that coordinate fundamental behavioral functions  ranging from sleep and wakefulness to feeding  stress  and reward in all vertebrates.,,,,,10X47 2,,breed:NA|age:Adult|collection date:2021|geo loc name:Israel|sex:not applicable|tissue:Brain Hypothalamus|sample type:single cell 4|BioSampleModel:Model organism or animal,,,,,,,,,SC ZF Hypo4,10X47 2,10X47 2,we worked swiftly with cold  well oxygenated solutions  optimizing Papain incubation times for tissue age and brain region. We used caution with Ca2+ and Mg2+ in aCSF to avoid RNA extraction/RT interference  favoring Ca2+/Mg2+ free aCSF if not diluted downstream. Modified aCSF had specific component concentrations  and our materials included essential equipment and anesthesia. We prepared aCSF from an 8x stock with adjusted CaCl2 and MgSO4 concentrations  kept it fresh  and oxygenated it. The zebrafish procedure began with lethal anesthesia  brain dissection in ice cold aCSF  embedding in 1.5% gel  and vibratome sectioning. Tissue was dissociated in the Papain vial  triturated  filtered  and washed  followed by centrifugation. The pellet was resuspended in aCSF with DNase  assessed for cell viability  counted  and diluted for use.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP462307,,,10X47_2_S2_L001_R1_001.fastq.gz 10X47_2_S2_L001_R2_001.fastq.gz 10X47_2_S2_L002_R1_001.fastq.gz 10X47_2_S2_L002_R2_001.fastq.gz 10X47_2_S2_L003_R1_001.fastq.gz 10X47_2_S2_L003_R2_001.fastq.gz 10X47_2_S2_L004_R1_001.fastq.gz 10X47_2_S2_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,3525979800.0,41975950.0,10X47 2 S2 L001 R1 001.fastq.gz,0:28 1:56,A:1030048762;C:725438274;G:855378888;T:915005070;N:108806,28,56,,,1030048762,725438274,855378888,915005070,108806,SRX21844392,SRS18942399,SRA1717104,Technion - Israel Institute of Technology|Neuroscince,Technion - Israel Institute of Technology,2,0.0126,0.69252,0.00546,0.25721,0.98005,0.85295,0.39068,0.51992,28,56,T,B,sc-like readlen,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_generic,generic-scrnaseq-only,,Israel,2023-09-21,Adult,Adult,Brain,Nervous System
26539,SRR26130976,SRX21844391,SRS18942406,SRP462307,PRJNA1019490,Single Cell RNA seq of Zebrafish Hypothalamus,PRJNA1019490,Other,Brain nuclei are traditionally defined by their anatomy  activity  and expression of specific markers. The hypothalamus contains discrete neuronal populations that coordinate fundamental behavioral functions  ranging from sleep and wakefulness to feeding  stress  and reward in all vertebrates.,,,,,10X47 1,,breed:NA|age:Adult|collection date:2021|geo loc name:Israel|sex:not applicable|tissue:Brain Hypothalamus|sample type:single cell 3|BioSampleModel:Model organism or animal,,,,,,,,,SC ZF Hypo3,10X47 1,10X47 1,we worked swiftly with cold  well oxygenated solutions  optimizing Papain incubation times for tissue age and brain region. We used caution with Ca2+ and Mg2+ in aCSF to avoid RNA extraction/RT interference  favoring Ca2+/Mg2+ free aCSF if not diluted downstream. Modified aCSF had specific component concentrations  and our materials included essential equipment and anesthesia. We prepared aCSF from an 8x stock with adjusted CaCl2 and MgSO4 concentrations  kept it fresh  and oxygenated it. The zebrafish procedure began with lethal anesthesia  brain dissection in ice cold aCSF  embedding in 1.5% gel  and vibratome sectioning. Tissue was dissociated in the Papain vial  triturated  filtered  and washed  followed by centrifugation. The pellet was resuspended in aCSF with DNase  assessed for cell viability  counted  and diluted for use.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP462307,,,10X47_1_S1_L001_R1_001.fastq.gz 10X47_1_S1_L001_R2_001.fastq.gz 10X47_1_S1_L002_R1_001.fastq.gz 10X47_1_S1_L002_R2_001.fastq.gz 10X47_1_S1_L003_R1_001.fastq.gz 10X47_1_S1_L003_R2_001.fastq.gz 10X47_1_S1_L004_R1_001.fastq.gz 10X47_1_S1_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,3288490212.0,39148693.0,10X47 1 S1 L001 R1 001.fastq.gz,0:28 1:56,A:950740376;C:692224998;G:723085676;T:922337432;N:101730,28,56,,,950740376,692224998,723085676,922337432,101730,SRX21844391,SRS18942406,SRA1717104,Technion - Israel Institute of Technology|Neuroscince,Technion - Israel Institute of Technology,2,0.01086,0.86383,0.0052,0.31674,0.98244,0.78309,0.39399,0.52299,28,56,T,B,sc-like readlen,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_generic,generic-scrnaseq-only,,Israel,2023-09-21,Adult,Adult,Brain,Nervous System
26540,SRR26130977,SRX21844390,SRS18942410,SRP462307,PRJNA1019490,Single Cell RNA seq of Zebrafish Hypothalamus,PRJNA1019490,Other,Brain nuclei are traditionally defined by their anatomy  activity  and expression of specific markers. The hypothalamus contains discrete neuronal populations that coordinate fundamental behavioral functions  ranging from sleep and wakefulness to feeding  stress  and reward in all vertebrates.,,,,,10X39 2,,breed:NA|age:Adult|collection date:2021|geo loc name:Israel|sex:not applicable|tissue:Brain Hypothalamus|sample type:single cell 2|BioSampleModel:Model organism or animal,,,,,,,,,SC ZF Hypo2,10X39 2,10X39 2,we worked swiftly with cold  well oxygenated solutions  optimizing Papain incubation times for tissue age and brain region. We used caution with Ca2+ and Mg2+ in aCSF to avoid RNA extraction/RT interference  favoring Ca2+/Mg2+ free aCSF if not diluted downstream. Modified aCSF had specific component concentrations  and our materials included essential equipment and anesthesia. We prepared aCSF from an 8x stock with adjusted CaCl2 and MgSO4 concentrations  kept it fresh  and oxygenated it. The zebrafish procedure began with lethal anesthesia  brain dissection in ice cold aCSF  embedding in 1.5% gel  and vibratome sectioning. Tissue was dissociated in the Papain vial  triturated  filtered  and washed  followed by centrifugation. The pellet was resuspended in aCSF with DNase  assessed for cell viability  counted  and diluted for use.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP462307,,,10X39_2_S2_L001_R1_001.fastq.gz 10X39_2_S2_L001_R2_001.fastq.gz 10X39_2_S2_L002_R1_001.fastq.gz 10X39_2_S2_L002_R2_001.fastq.gz 10X39_2_S2_L003_R1_001.fastq.gz 10X39_2_S2_L003_R2_001.fastq.gz 10X39_2_S2_L004_R1_001.fastq.gz 10X39_2_S2_L004_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,20594785932.0,245176023.0,10X39 2 S2 L001 R1 001.fastq.gz,0:28 1:56,A:5909286071;C:4378110318;G:4489721587;T:5804002561;N:13665395,28,56,,,5909286071,4378110318,4489721587,5804002561,13665395,SRX21844390,SRS18942410,SRA1717104,Technion - Israel Institute of Technology|Neuroscince,Technion - Israel Institute of Technology,2,0.01117,0.90005,0.00416,0.25843,0.98056,0.77926,0.45338,0.53366,28,56,T,B,sc-like readlen,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_generic,generic-scrnaseq-only,,Israel,2023-09-21,Adult,Adult,Brain,Nervous System
26541,SRR26130978,SRX21844389,SRS18942405,SRP462307,PRJNA1019490,Single Cell RNA seq of Zebrafish Hypothalamus,PRJNA1019490,Other,Brain nuclei are traditionally defined by their anatomy  activity  and expression of specific markers. The hypothalamus contains discrete neuronal populations that coordinate fundamental behavioral functions  ranging from sleep and wakefulness to feeding  stress  and reward in all vertebrates.,,,,,10X39 1,,breed:NA|age:Adult|collection date:2021|geo loc name:Israel|sex:not applicable|tissue:Brain Hypothalamus|sample type:single cell 1|BioSampleModel:Model organism or animal,,,,,,,,,SC ZF Hypo1,10X39 1,10X39 1,we worked swiftly with cold  well oxygenated solutions  optimizing Papain incubation times for tissue age and brain region. We used caution with Ca2+ and Mg2+ in aCSF to avoid RNA extraction/RT interference  favoring Ca2+/Mg2+ free aCSF if not diluted downstream. Modified aCSF had specific component concentrations  and our materials included essential equipment and anesthesia. We prepared aCSF from an 8x stock with adjusted CaCl2 and MgSO4 concentrations  kept it fresh  and oxygenated it. The zebrafish procedure began with lethal anesthesia  brain dissection in ice cold aCSF  embedding in 1.5% gel  and vibratome sectioning. Tissue was dissociated in the Papain vial  triturated  filtered  and washed  followed by centrifugation. The pellet was resuspended in aCSF with DNase  assessed for cell viability  counted  and diluted for use.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP462307,,,10X39_1_S1_L004_R2_001.fastq.gz 10X39_1_S1_L004_R1_001.fastq.gz 10X39_1_S1_L003_R2_001.fastq.gz 10X39_1_S1_L003_R1_001.fastq.gz 10X39_1_S1_L002_R2_001.fastq.gz 10X39_1_S1_L002_R1_001.fastq.gz 10X39_1_S1_L001_R2_001.fastq.gz 10X39_1_S1_L001_R1_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,13293718116.0,158258549.0,10X39 1 S1 L001 R1 001.fastq.gz,0:28 1:56,A:3791388201;C:2833705086;G:2863082386;T:3796683434;N:8859009,28,56,,,3791388201,2833705086,2863082386,3796683434,8859009,SRX21844389,SRS18942405,SRA1717104,Technion - Israel Institute of Technology|Neuroscince,Technion - Israel Institute of Technology,2,0.01078,0.90504,0.00392,0.24179,0.98098,0.77741,0.42922,0.52858,28,56,T,B,sc-like readlen,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_generic,generic-scrnaseq-only,,Israel,2023-09-21,Adult,Adult,Brain,Nervous System
33311,SRR29927545,SRX25421505,SRS22081661,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ON 3d rep3,MCWR 2019 000157,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:female|tissue:optic nerve|treatment:ON 3d rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 xxx post injury optic nerve,ON 3d rep3,ON 3d rep3,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000157_S28_L001_R1_001.fastq.gz MCWR_2019_000157_S28_L001_R2_001.fastq.gz MCWR_2019_000157_S28_L002_R1_001.fastq.gz MCWR_2019_000157_S28_L002_R2_001.fastq.gz,fastq fastq fastq fastq,12637756180.0,41976869.0,MCWR 2019 000157 S28 L001 R1 001.fastq.gz,0:150.53 1:150.53,A:3303913534;C:3007130754;G:3036624621;T:3289934437;N:152834,150,150,,,3303913534,3007130754,3036624621,3289934437,152834,SRX25421505,SRS22081661,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.9516,0.95161,0.06268,0.06324,0.7245,0.72539,0.50499,0.5082,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Brain,Nervous System
33312,SRR29927546,SRX25421504,SRS22081660,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ON 3d rep2,MCWR 2019 000156,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:female|tissue:optic nerve|treatment:ON 3d rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 xxx post injury optic nerve,ON 3d rep2,ON 3d rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000156_S27_L001_R1_001.fastq.gz MCWR_2019_000156_S27_L001_R2_001.fastq.gz MCWR_2019_000156_S27_L002_R1_001.fastq.gz MCWR_2019_000156_S27_L002_R2_001.fastq.gz,fastq fastq fastq fastq,8225156065.0,27320970.0,MCWR 2019 000156 S27 L001 R1 001.fastq.gz,0:150.53 1:150.53,A:2177338510;C:1933476228;G:1950713017;T:2163526872;N:101438,150,150,,,2177338510,1933476228,1950713017,2163526872,101438,SRX25421504,SRS22081660,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.94816,0.94656,0.06839,0.06869,0.71873,0.72099,0.52048,0.51823,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Brain,Nervous System
33314,SRR29927548,SRX25421502,SRS22081658,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ON 3d rep1,MCWR 2019 000149,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:female|tissue:optic nerve|treatment:ON 3d rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: 3 xxx post injury optic nerve,ON 3d rep1,ON 3d rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000149_S20_L001_R1_001.fastq.gz MCWR_2019_000149_S20_L001_R2_001.fastq.gz MCWR_2019_000149_S20_L002_R1_001.fastq.gz MCWR_2019_000149_S20_L002_R2_001.fastq.gz,fastq fastq fastq fastq,11234251579.0,37312508.0,MCWR 2019 000149 S20 L001 R1 001.fastq.gz,0:150.54 1:150.55,A:2884045359;C:2724366727;G:2744442031;T:2881252209;N:145253,150,150,,,2884045359,2724366727,2744442031,2881252209,145253,SRX25421502,SRS22081658,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95118,0.95151,0.09345,0.09458,0.69589,0.6953,0.47864,0.4794,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Brain,Nervous System
33315,SRR29927549,SRX25421501,SRS22081657,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ON Control rep3,MCWR 2019 000148,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:female|tissue:optic nerve|treatment:ON Control rep3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive optic nerve,ON Control rep3,ON Control rep3,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000148_S19_L002_R2_001.fastq.gz MCWR_2019_000148_S19_L002_R1_001.fastq.gz MCWR_2019_000148_S19_L001_R2_001.fastq.gz MCWR_2019_000148_S19_L001_R1_001.fastq.gz,fastq fastq fastq fastq,10659326860.0,35402192.0,MCWR 2019 000148 S19 L001 R1 001.fastq.gz,0:150.55 1:150.55,A:2756153864;C:2571019186;G:2591020090;T:2740998974;N:134746,150,150,,,2756153864,2571019186,2591020090,2740998974,134746,SRX25421501,SRS22081657,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95167,0.95091,0.09159,0.09247,0.74852,0.74961,0.46451,0.46354,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Brain,Nervous System
33316,SRR29927550,SRX25421500,SRS22081656,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ON Control rep2,MCWR 2019 000147,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:female|tissue:optic nerve|treatment:ON Control rep2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive optic nerve,ON Control rep2,ON Control rep2,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000147_S18_L002_R2_001.fastq.gz MCWR_2019_000147_S18_L002_R1_001.fastq.gz MCWR_2019_000147_S18_L001_R2_001.fastq.gz MCWR_2019_000147_S18_L001_R1_001.fastq.gz,fastq fastq fastq fastq,13568087444.0,45061061.0,MCWR 2019 000147 S18 L001 R1 001.fastq.gz,0:150.55 1:150.55,A:3431511167;C:3343690230;G:3365044224;T:3427668362;N:173461,150,150,,,3431511167,3343690230,3365044224,3427668362,173461,SRX25421500,SRS22081656,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95653,0.95547,0.08512,0.08497,0.73093,0.73143,0.46625,0.46899,150,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Brain,Nervous System
33317,SRR29927551,SRX25421499,SRS22081655,SRP521592,PRJNA1139127,Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration,PRJNA1139127,Other,Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues  we performed laser capture mRNA sequencing of the retinal ganglion cell layer  inner nuclear layer  outer nuclear layer  and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.,,,,ON Control rep1,MCWR 2019 000146,,strain:wild type|dev stage:adult|collection date:2019 10 18|geo loc name:USA: Wisconsin  Milwaukee|sex:female|tissue:optic nerve|treatment:ON Control rep1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio: naive optic nerve,ON Control rep1,ON Control rep1,SMART Seqv4,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP521592,,,MCWR_2019_000146_S17_L002_R2_001.fastq.gz MCWR_2019_000146_S17_L002_R1_001.fastq.gz MCWR_2019_000146_S17_L001_R2_001.fastq.gz MCWR_2019_000146_S17_L001_R1_001.fastq.gz,fastq fastq fastq fastq,10264964293.0,34089023.0,MCWR 2019 000146 S17 L001 R1 001.fastq.gz,0:150.56 1:150.56,A:2551033720;C:2573448189;G:2588121299;T:2552234053;N:127032,150,150,,,2551033720,2573448189,2588121299,2552234053,127032,SRX25421499,SRS22081655,SRA1930690,"Medical College of Wisconsin|Cell Biology, Neurobiology, and Anatomy",Medical College of Wisconsin,2,0.95724,0.95715,0.07005,0.07059,0.75637,0.75732,0.42392,0.41384,151,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,sc,single_cell_plate,smartseq,,United States,2024-07-23,Adult,Adult,Brain,Nervous System
33360,SRR30140788,SRX25609257,SRS22255959,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,DMSO 1,DMSO 1,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:DMSO 1|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S886,S886,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,DMSO_1_1.fq.gz DMSO_1_2.fq.gz,fastq fastq,6848352600.0,22827842.0,DMSO 1 1.fq.gz,0:150 1:150,A:2042619042;C:1408327078;G:1392721721;T:2004605654;N:79105,150,150,,,2042619042,1408327078,1392721721,2004605654,79105,SRX25609257,SRS22255959,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33361,SRR30140789,SRX25609256,SRS22255958,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,DMSO 2,DMSO 2,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:DMSO 2|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S887,S887,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,DMSO_2_1.fq.gz DMSO_2_2.fq.gz,fastq fastq,6722867400.0,22409558.0,DMSO 2 1.fq.gz,0:150 1:150,A:1987471480;C:1402576521;G:1384470516;T:1948276779;N:72104,150,150,,,1987471480,1402576521,1384470516,1948276779,72104,SRX25609256,SRS22255958,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33362,SRR30140790,SRX25609255,SRS22255957,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,DMSO 3,DMSO 3,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:DMSO 3|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S888,S888,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,DMSO_3_1.fq.gz DMSO_3_2.fq.gz,fastq fastq,6385524600.0,21285082.0,DMSO 3 1.fq.gz,0:150 1:150,A:1858080423;C:1360978750;G:1348505877;T:1817909740;N:49810,150,150,,,1858080423,1360978750,1348505877,1817909740,49810,SRX25609255,SRS22255957,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33363,SRR30140791,SRX25609254,SRS22255956,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,BPS1 1,BPS1 1,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:BPS1 1|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S889,S889,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,BPS1_1_1.fq.gz BPS1_1_2.fq.gz,fastq fastq,6677891400.0,22259638.0,BPS1 1 1.fq.gz,0:150 1:150,A:1942755547;C:1419146767;G:1404962384;T:1910952784;N:73918,150,150,,,1942755547,1419146767,1404962384,1910952784,73918,SRX25609254,SRS22255956,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33364,SRR30140792,SRX25609253,SRS22255955,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,BPS1 2,BPS1 2,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:BPS1 2|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S890,S890,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,BPS1_2_1.fq.gz BPS1_2_2.fq.gz,fastq fastq,6521417700.0,21738059.0,BPS1 2 1.fq.gz,0:150 1:150,A:1909300221;C:1371099464;G:1358671002;T:1882282904;N:64109,150,150,,,1909300221,1371099464,1358671002,1882282904,64109,SRX25609253,SRS22255955,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33365,SRR30140793,SRX25609252,SRS22255954,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,BPS1 3,BPS1 3,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:BPS1 3|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S891,S891,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,BPS1_3_1.fq.gz BPS1_3_2.fq.gz,fastq fastq,6821300100.0,22737667.0,BPS1 3 1.fq.gz,0:150 1:150,A:1996014045;C:1437758871;G:1429644156;T:1957815359;N:67669,150,150,,,1996014045,1437758871,1429644156,1957815359,67669,SRX25609252,SRS22255954,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33366,SRR30140794,SRX25609251,SRS22255953,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,BPS100 1,BPS100 1,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:BPS100 1|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S892,S892,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,BPS100_1_1.fq.gz BPS100_1_2.fq.gz,fastq fastq,6420793800.0,21402646.0,BPS100 1 1.fq.gz,0:150 1:150,A:1856129124;C:1374411655;G:1366071243;T:1824132054;N:49724,150,150,,,1856129124,1374411655,1366071243,1824132054,49724,SRX25609251,SRS22255953,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33367,SRR30140795,SRX25609250,SRS22255952,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,BPS100 2,BPS100 2,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:BPS100 2|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S893,S893,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,BPS100_2_1.fq.gz BPS100_2_2.fq.gz,fastq fastq,6639336600.0,22131122.0,BPS100 2 1.fq.gz,0:150 1:150,A:1901484110;C:1438361866;G:1430361119;T:1869078551;N:50954,150,150,,,1901484110,1438361866,1430361119,1869078551,50954,SRX25609250,SRS22255952,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
33368,SRR30140796,SRX25609249,SRS22255951,SRP524310,PRJNA1144219,Danio rerio Raw sequence reads,PRJNA1144219,Whole Genome Sequencing,post exposure to bisphenol S for 50 days  zebrafish brain tissue was performed by RNA seq,,,,BPS100 3,BPS100 3,,strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:50 days|dev stage:BPS100 3|collection date:not collected|geo loc name:China: Qingdao|sex:intersex|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish Danio rerio,S894,S894,normal RNA seq of Danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP524310,,,BPS100_3_1.fq.gz BPS100_3_2.fq.gz,fastq fastq,6586231800.0,21954106.0,BPS100 3 1.fq.gz,0:150 1:150,A:1875041634;C:1438699475;G:1425868891;T:1846570793;N:51007,150,150,,,1875041634,1438699475,1425868891,1846570793,51007,SRX25609249,SRS22255951,SRA1940694,Ocean University of China|College of Marine Life Sciences,Ocean University of China,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-08-06,Juvenile,Juvenile,Brain,Nervous System
61710,SRR13015568,SRX9466668,SRS7678791,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,cerebellum  male replicate 1,cerebellum male.rep1,,strain:AB wildtype|dev stage:adult|sex:male|tissue:cerebellum|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA Seq of zebrafish brain: adult male cerebellum Rep1,1m5,1m5,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,1m5_S12_L006_R1_001.fastq.gz 1m5_S12_L006_R2_001.fastq.gz,fastq fastq,14610343968.0,96120684.0,1m5 S12 L006 R1 001.fastq.gz,0:76 1:76,A:3719027794;C:3589619335;G:3514384852;T:3784663256;N:2648731,76,76,,,3719027794,3589619335,3514384852,3784663256,2648731,SRX9466668,SRS7678791,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.90214,0.89941,0.44035,0.43795,0.78139,0.78634,0.62348,0.61644,76,76,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System
61711,SRR13015569,SRX9466667,SRS7678744,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,whole brain parents from cross 1,male cross 1 adult brain,,strain:AB wildtype|dev stage:adult|sex:male|tissue:whole brain|embryos derived by cross:single cross 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq whole brain  zebrafish male from single cross 1  lane1,PJ KH 030 1,PJ KH 030 1,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_030_S30_L003_R1_001.fastq.gz PJ_KH_030_S30_L003_R2_001.fastq.gz,fastq fastq,6429727376.0,21290488.0,PJ KH 030 S30 L003 R1 001.fastq.gz,0:151 1:151,A:1684299085;C:1528812483;G:1589785859;T:1625953978;N:875971,151,151,,,1684299085,1528812483,1589785859,1625953978,875971,SRX9466667,SRS7678744,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.9239,0.92493,0.09222,0.08938,0.68361,0.6854,0.49782,0.50548,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System
61712,SRR13015570,SRX9466666,SRS7678790,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,whole brain parents from cross 1,female cross 1 adult brain,,strain:AB wildtype|dev stage:adult|sex:female|tissue:whole brain|embryos derived by cross:single cross 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq whole brain  zebrafish female from single cross 1  lane2,PJ KH 029 2,PJ KH 029 2,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_029_S29_L004_R1_001.fastq.gz PJ_KH_029_S29_L004_R2_001.fastq.gz,fastq fastq,7450130412.0,24669306.0,PJ KH 029 S29 L004 R1 001.fastq.gz,0:151 1:151,A:1969709863;C:1756017543;G:1788139547;T:1934886199;N:1377260,151,151,,,1969709863,1756017543,1788139547,1934886199,1377260,SRX9466666,SRS7678790,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.94617,0.94782,0.10955,0.10649,0.69532,0.69948,0.49163,0.50315,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System
61713,SRR13015571,SRX9466665,SRS7678790,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,whole brain parents from cross 1,female cross 1 adult brain,,strain:AB wildtype|dev stage:adult|sex:female|tissue:whole brain|embryos derived by cross:single cross 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq whole brain  zebrafish female from single cross 1  lane1,PJ KH 029 1,PJ KH 029 1,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_029_S29_L003_R1_001.fastq.gz PJ_KH_029_S29_L003_R2_001.fastq.gz,fastq fastq,7353222236.0,24348418.0,PJ KH 029 S29 L003 R1 001.fastq.gz,0:151 1:151,A:1944005714;C:1733426581;G:1767411436;T:1907377753;N:1000752,151,151,,,1944005714,1733426581,1767411436,1907377753,1000752,SRX9466665,SRS7678790,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.94563,0.94753,0.10885,0.10579,0.69489,0.70094,0.491,0.49985,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System
61716,SRR13015574,SRX9466662,SRS7678788,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 2 72hpf head.rep2,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 2|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 2  Rep2  lane2,PJ KH 025 2,PJ KH 025 2,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_025_S25_L004_R1_001.fastq.gz PJ_KH_025_S25_L004_R2_001.fastq.gz,fastq fastq,6044277226.0,20014163.0,PJ KH 025 S25 L004 R1 001.fastq.gz,0:151 1:151,A:1592897775;C:1431102291;G:1483194415;T:1535949729;N:1133016,151,151,,,1592897775,1431102291,1483194415,1535949729,1133016,SRX9466662,SRS7678788,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.83797,0.8376,0.08415,0.08231,0.67734,0.67984,0.47005,0.47051,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61717,SRR13015575,SRX9466661,SRS7678788,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 2 72hpf head.rep2,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 2|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 2  Rep2  lane1,PJ KH 025 1,PJ KH 025 1,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_025_S25_L003_R1_001.fastq.gz PJ_KH_025_S25_L003_R2_001.fastq.gz,fastq fastq,5975225530.0,19785515.0,PJ KH 025 S25 L003 R1 001.fastq.gz,0:151 1:151,A:1575693310;C:1413843218;G:1467480556;T:1517391851;N:816595,151,151,,,1575693310,1413843218,1467480556,1517391851,816595,SRX9466661,SRS7678788,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.83685,0.83734,0.08376,0.08206,0.67452,0.67738,0.47208,0.46848,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61720,SRR13015578,SRX9466658,SRS7678785,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 2 72hpf head.rep1,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 2|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 2  Rep1  lane2,PJ KH 023 2,PJ KH 023 2,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_023_S23_L004_R1_001.fastq.gz PJ_KH_023_S23_L004_R2_001.fastq.gz,fastq fastq,6256736038.0,20717669.0,PJ KH 023 S23 L004 R1 001.fastq.gz,0:151 1:151,A:1682521012;C:1447539005;G:1492671488;T:1632844528;N:1160005,151,151,,,1682521012,1447539005,1492671488,1632844528,1160005,SRX9466658,SRS7678785,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.94403,0.94422,0.06806,0.06559,0.70849,0.71135,0.4781,0.47695,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61721,SRR13015579,SRX9466657,SRS7678786,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,diencephalon  male replicate 1,diencephalon male.rep1,,strain:AB wildtype|dev stage:adult|sex:male|tissue:diencephalon|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA Seq of zebrafish brain: adult male dienecephalon Rep1,1m4,1m4,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,1m4_S15_L006_R1_001.fastq.gz 1m4_S15_L006_R2_001.fastq.gz,fastq fastq,7106405688.0,46752669.0,1m4 S15 L006 R1 001.fastq.gz,0:76 1:76,A:1748572830;C:1800701751;G:1764366917;T:1791473571;N:1290619,76,76,,,1748572830,1800701751,1764366917,1791473571,1290619,SRX9466657,SRS7678786,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.91598,0.91295,0.39083,0.38452,0.76272,0.76897,0.65954,0.63928,76,76,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System
61722,SRR13015580,SRX9466656,SRS7678785,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 2 72hpf head.rep1,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 2|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 2  Rep1  lane1,PJ KH 023 1,PJ KH 023 1,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_023_S23_L003_R1_001.fastq.gz PJ_KH_023_S23_L003_R2_001.fastq.gz,fastq fastq,6172422772.0,20438486.0,PJ KH 023 S23 L003 R1 001.fastq.gz,0:151 1:151,A:1661367824;C:1426239358;G:1473404055;T:1610579269;N:832266,151,151,,,1661367824,1426239358,1473404055,1610579269,832266,SRX9466656,SRS7678785,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.94408,0.94436,0.06817,0.06648,0.71074,0.71388,0.47742,0.47763,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61727,SRR13015585,SRX9466651,SRS7678782,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 1 72hpf head.rep2,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 1|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 1  Rep2  lane2,PJ KH 020 2,PJ KH 020 2,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_020_S20_L004_R1_001.fastq.gz PJ_KH_020_S20_L004_R2_001.fastq.gz,fastq fastq,6745348180.0,22335590.0,PJ KH 020 S20 L004 R1 001.fastq.gz,0:151 1:151,A:1776789651;C:1593504281;G:1638208135;T:1735588434;N:1257679,151,151,,,1776789651,1593504281,1638208135,1735588434,1257679,SRX9466651,SRS7678782,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.95721,0.96048,0.07705,0.07603,0.7109,0.71463,0.42624,0.41885,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61728,SRR13015586,SRX9466650,SRS7678782,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 1 72hpf head.rep2,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 1|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 1  Rep2  lane1,PJ KH 020 1,PJ KH 020 1,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_020_S20_L003_R1_001.fastq.gz PJ_KH_020_S20_L003_R2_001.fastq.gz,fastq fastq,6729174570.0,22282035.0,PJ KH 020 S20 L003 R1 001.fastq.gz,0:151 1:151,A:1774094248;C:1587891896;G:1635085296;T:1731190595;N:912535,151,151,,,1774094248,1587891896,1635085296,1731190595,912535,SRX9466650,SRS7678782,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.95736,0.96066,0.07726,0.07635,0.71082,0.71435,0.42984,0.42332,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61729,SRR13015587,SRX9466649,SRS7678781,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 1 72hpf head.rep1,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 1|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 1  Rep1  lane2,PJ KH 019 2,PJ KH 019 2,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_019_S19_L004_R1_001.fastq.gz PJ_KH_019_S19_L004_R2_001.fastq.gz,fastq fastq,6593199976.0,21831788.0,PJ KH 019 S19 L004 R1 001.fastq.gz,0:151 1:151,A:1810838908;C:1489027477;G:1536979505;T:1755131961;N:1222125,151,151,,,1810838908,1489027477,1536979505,1755131961,1222125,SRX9466649,SRS7678781,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.94258,0.94483,0.12584,0.12382,0.66048,0.66186,0.46479,0.46294,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61730,SRR13015588,SRX9466648,SRS7678781,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,zebrafish embryos 72hpf head,single cross 1 72hpf head.rep1,,strain:AB wildtype|dev stage:72 hpf|sex:unknown|tissue:head|embryos derived by cross:single cross 1|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA seq of whole zebrafish embryos  wildtype AB  72 hpf  head  single cross 1  Rep1  lane1,PJ KH 019 1,PJ KH 019 1,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,PJ_KH_019_S19_L003_R1_001.fastq.gz PJ_KH_019_S19_L003_R2_001.fastq.gz,fastq fastq,6448860284.0,21353842.0,PJ KH 019 S19 L003 R1 001.fastq.gz,0:151 1:151,A:1772421932;C:1455472902;G:1504524766;T:1715573168;N:867516,151,151,,,1772421932,1455472902,1504524766,1715573168,867516,SRX9466648,SRS7678781,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.9419,0.9441,0.12553,0.12393,0.65963,0.66257,0.46785,0.46982,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Larval,Larval,Head,Nervous System
61732,SRR13015590,SRX9466646,SRS7678780,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,optic tectum  male replicate 1,optic tectum male.rep1,,strain:AB wildtype|dev stage:adult|sex:male|tissue:optic tectum|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA Seq of zebrafish brain: adult male optic tectum Rep1,1m3,1m3,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,1m3_S14_L006_R1_001.fastq.gz 1m3_S14_L006_R2_001.fastq.gz,fastq fastq,5372174304.0,35343252.0,1m3 S14 L006 R1 001.fastq.gz,0:76 1:76,A:1300948390;C:1375733977;G:1357794659;T:1336735104;N:962174,76,76,,,1300948390,1375733977,1357794659,1336735104,962174,SRX9466646,SRS7678780,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.91004,0.90929,0.3956,0.3953,0.77402,0.7796,0.66693,0.67289,76,76,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System
61743,SRR13015601,SRX9466635,SRS7678775,SRP291905,PRJNA674002,A to I RNA editing in zebrafish during development,PRJNA674002,Other,Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.,,,,telencephalon  male replicate 1,telencephalon male.rep1,,strain:AB wildtype|dev stage:adult|sex:male|tissue:telencephalon|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal,,,,,,,,,mRNA Seq of zebrafish brain: adult male telencephalon Rep1,1m2,1m2,stranded mRNA,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP291905,,,1m2_S11_L006_R1_001.fastq.gz 1m2_S11_L006_R2_001.fastq.gz,fastq fastq,5384962824.0,35427387.0,1m2 S11 L006 R1 001.fastq.gz,0:76 1:76,A:1271209260;C:1421101122;G:1397017405;T:1294662766;N:972271,76,76,,,1271209260,1421101122,1397017405,1294662766,972271,SRX9466635,SRS7678775,SRA1153075,MDC Berlin|BIMSB,MDC Berlin,2,0.91707,0.91476,0.37268,0.36988,0.77863,0.78242,0.64111,0.64265,76,76,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-11-10,Adult,Adult,Brain,Nervous System