rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 9770,ERR5838122,ERX5487778,ERS6337138,ERP119543,PRJEB36360,Transcriptomic analysis of adult skin from 9 Danio species,ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27,Other,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21,PUBMED:33277491,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,Transcriptomic analysis of adult skin from 9 Danio species,SAMEA8652584,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652584|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:05 Danio rerio adult skin 5|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:05 Danio rerio adult skin 5|sex:male|tissue type:skin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 5,unspecified,1,TruSeq stranded mRNA Illumina,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP119543,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29,S1385Nr5.1.fastq.gz S1385Nr5.2.fastq.gz,fastq fastq,6912206316.0,34306523.0,ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 5,0:100.74 1:100.74,A:1853779551;C:1607929988;G:1658402611;T:1792045990;N:48176,100,100,,,1853779551,1607929988,1658402611,1792045990,48176,ERX5487778,ERS6337138,ERA4129786,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,2,0.96095,0.962,0.08049,0.07821,0.70654,0.70926,0.51398,0.51064,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2020-03-21,Adult,Adult,Skin,Surface Structure 9771,ERR5838121,ERX5487777,ERS6337136,ERP119543,PRJEB36360,Transcriptomic analysis of adult skin from 9 Danio species,ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27,Other,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21,PUBMED:33277491,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,Transcriptomic analysis of adult skin from 9 Danio species,SAMEA8652582,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652582|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:04 Danio rerio adult skin 4|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:04 Danio rerio adult skin 4|sex:male|tissue type:skin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 4,unspecified,1,TruSeq stranded mRNA Illumina,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP119543,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29,S1385Nr4.1.fastq.gz S1385Nr4.2.fastq.gz,fastq fastq,6161942050.0,30595009.0,ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 4,0:100.70 1:100.70,A:1642716052;C:1446485458;G:1490121106;T:1582576605;N:42829,100,100,,,1642716052,1446485458,1490121106,1582576605,42829,ERX5487777,ERS6337136,ERA4129786,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,2,0.96544,0.96564,0.07368,0.07303,0.70822,0.71092,0.50154,0.50781,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2020-03-21,Adult,Adult,Skin,Surface Structure 9772,ERR5838120,ERX5487776,ERS6337133,ERP119543,PRJEB36360,Transcriptomic analysis of adult skin from 9 Danio species,ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27,Other,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21,PUBMED:33277491,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,Transcriptomic analysis of adult skin from 9 Danio species,SAMEA8652579,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652579|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:03 Danio rerio adult skin 3|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:03 Danio rerio adult skin 3|sex:female|tissue type:skin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 3,unspecified,1,TruSeq stranded mRNA Illumina,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP119543,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29,S1385Nr3.1.fastq.gz S1385Nr3.2.fastq.gz,fastq fastq,7422881394.0,36866805.0,ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 3,0:100.67 1:100.67,A:1950275527;C:1768648993;G:1827362519;T:1876542858;N:51497,100,100,,,1950275527,1768648993,1827362519,1876542858,51497,ERX5487776,ERS6337133,ERA4129786,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,2,0.97031,0.97047,0.04915,0.04817,0.71459,0.71894,0.51089,0.5097,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2020-03-21,Adult,Adult,Skin,Surface Structure 9773,ERR5838119,ERX5487775,ERS6337132,ERP119543,PRJEB36360,Transcriptomic analysis of adult skin from 9 Danio species,ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27,Other,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21,PUBMED:33277491,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,Transcriptomic analysis of adult skin from 9 Danio species,SAMEA8652578,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652578|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:02 Danio rerio adult skin 2|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:02 Danio rerio adult skin 2|sex:female|tissue type:skin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 2,unspecified,1,TruSeq stranded mRNA Illumina,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP119543,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29,S1385Nr2.1.fastq.gz S1385Nr2.2.fastq.gz,fastq fastq,7006718028.0,34786110.0,ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 2,0:100.71 1:100.71,A:1847371523;C:1665346769;G:1712373266;T:1781565768;N:60702,100,100,,,1847371523,1665346769,1712373266,1781565768,60702,ERX5487775,ERS6337132,ERA4129786,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,2,0.96136,0.96039,0.05872,0.05752,0.70325,0.70674,0.46717,0.48218,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2020-03-21,Adult,Adult,Skin,Surface Structure 9774,ERR5838118,ERX5487774,ERS6337063,ERP119543,PRJEB36360,Transcriptomic analysis of adult skin from 9 Danio species,ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-22-01-2020-08:38:04:562-27,Other,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,ENA FIRST PUBLIC:2020 03 21|ENA LAST UPDATE:2021 04 21,PUBMED:33277491,Transcriptomic analysis was carried out on adult skin of the flanks for the following nine Danio species: Danio rerio Danio aesculapii Danio nigrofasciatus Danio tinwini Danio kyathit Danio albolineatus Danio choprae Danio margaritatus and Danio erythromicron. Five replicates per species were carried out. Each replicate was derived from a single fish with skin samples coming from both flanks. Paired end stranded RNA Seq was then carried out.,Transcriptomic analysis of adult skin from 9 Danio species,SAMEA8652509,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,ENA first public:2021 04 30|ENA last update:2021 04 29|External Id:SAMEA8652509|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2021 04 30T00:30:20Z|INSDC last update:2021 04 29T02:45:00Z|INSDC status:public|Submitter Id:01 Danio rerio adult skin 1|collected by:Marco Podobnik|collection date:2019 08 23|common name:zebrafish|dev stage:adult|identified by:Marco Podobnik|isolation source:Tuebingen|sample name:01 Danio rerio adult skin 1|sex:male|tissue type:skin,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing,ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 1,unspecified,1,TruSeq stranded mRNA Illumina,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP119543,Illumina NovaSeq 6000 paired end sequencing,ENA FIRST PUBLIC:2021 04 30|ENA LAST UPDATE:2021 04 29,S1385Nr1.1.fastq.gz S1385Nr1.2.fastq.gz,fastq fastq,6586457266.0,32719900.0,ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 28 04 2021 08:27:34:651 1,0:100.65 1:100.65,A:1709547533;C:1593125315;G:1617088678;T:1666650824;N:44916,100,100,,,1709547533,1593125315,1617088678,1666650824,44916,ERX5487774,ERS6337063,ERA4129786,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive,MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY,2,0.9531,0.95366,0.07763,0.07567,0.71384,0.71634,0.52409,0.52475,101,101,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,trueseq,bulk,unknown,unknown,,Germany,2020-03-21,Adult,Adult,Skin,Surface Structure 67672,SRR17247005,SRX13426046,SRS11327039,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,D2,,isolate:not collected|age:3mpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate D2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S342,S342,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,d2_R1.fq.gz d2_R2.fq.gz,fastq fastq,6774255900.0,22580853.0,d2 R1.fq.gz,0:150 1:150,A:1901164418;C:1468805326;G:1485945297;T:1918188680;N:152179,150,150,,,1901164418,1468805326,1485945297,1918188680,152179,SRX13426046,SRS11327039,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.94179,0.94443,0.0891,0.08968,0.7331,0.73513,0.62221,0.62339,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Adult,Adult,Skin,Surface Structure 67673,SRR17247006,SRX13426045,SRS11327038,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,D1,,isolate:not collected|age:3mpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate D1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S341,S341,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,d1_R1.fq.gz d1_R2.fq.gz,fastq fastq,5804251200.0,19347504.0,d1 R1.fq.gz,0:150 1:150,A:1651195300;C:1234370632;G:1251804070;T:1666750262;N:130936,150,150,,,1651195300,1234370632,1251804070,1666750262,130936,SRX13426045,SRS11327038,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.83287,0.83611,0.08737,0.08841,0.7498,0.75162,0.64045,0.66425,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Adult,Adult,Skin,Surface Structure 67674,SRR17247007,SRX13426044,SRS11327036,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,C3,,isolate:not collected|age:41dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate C3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S340,S340,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,c3_R1.fq.gz c3_R2.fq.gz,fastq fastq,4841497500.0,16138325.0,c3 R1.fq.gz,0:150 1:150,A:1386818341;C:1017922211;G:1041712160;T:1394940280;N:104508,150,150,,,1386818341,1017922211,1041712160,1394940280,104508,SRX13426044,SRS11327036,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.90078,0.9042,0.12147,0.12291,0.73184,0.73497,0.57479,0.5555,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Juvenile,Juvenile,Skin,Surface Structure 67675,SRR17247008,SRX13426043,SRS11327037,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,C2,,isolate:not collected|age:41dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate C2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S339,S339,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,c2_R1.fq.gz c2_R2.fq.gz,fastq fastq,7688124900.0,25627083.0,c2 R1.fq.gz,0:150 1:150,A:2102172030;C:1722525598;G:1752732030;T:2110524143;N:171099,150,150,,,2102172030,1722525598,1752732030,2110524143,171099,SRX13426043,SRS11327037,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.8669,0.86816,0.08761,0.08688,0.70725,0.71145,0.49101,0.48619,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Juvenile,Juvenile,Skin,Surface Structure 67676,SRR17247009,SRX13426042,SRS11327035,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,C1,,isolate:not collected|age:41dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate C1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S338,S338,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,c1_R1.fq.gz c1_R2.fq.gz,fastq fastq,7456776900.0,24855923.0,c1 R1.fq.gz,0:150 1:150,A:2051878608;C:1656315578;G:1687161312;T:2061254398;N:167004,150,150,,,2051878608,1656315578,1687161312,2061254398,167004,SRX13426042,SRS11327035,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.82556,0.82709,0.09055,0.08946,0.70471,0.70857,0.48138,0.4916,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Juvenile,Juvenile,Skin,Surface Structure 67677,SRR17247010,SRX13426041,SRS11327033,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,B3,,isolate:not collected|age:33dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate B3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S337,S337,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,b3_R1.fq.gz b3_R2.fq.gz,fastq fastq,9228717900.0,30762393.0,b3 R1.fq.gz,0:150 1:150,A:2487982964;C:2099691030;G:2134638107;T:2506202131;N:203668,150,150,,,2487982964,2099691030,2134638107,2506202131,203668,SRX13426041,SRS11327033,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.66624,0.66885,0.06853,0.06779,0.71887,0.72066,0.4895,0.49681,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Juvenile,Juvenile,Skin,Surface Structure 67678,SRR17247011,SRX13426040,SRS11327034,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,B2,,isolate:not collected|age:33dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate B2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S336,S336,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,b2_R1.fq.gz b2_R2.fq.gz,fastq fastq,6040557600.0,20135192.0,b2 R1.fq.gz,0:150 1:150,A:1664821294;C:1338719408;G:1359251973;T:1677628310;N:136615,150,150,,,1664821294,1338719408,1359251973,1677628310,136615,SRX13426040,SRS11327034,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.93426,0.93571,0.10066,0.10055,0.69631,0.69897,0.47588,0.46263,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Juvenile,Juvenile,Skin,Surface Structure 67679,SRR17247012,SRX13426039,SRS11327032,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,B1,,isolate:not collected|age:33dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate B1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S335,S335,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,b1_R1.fq.gz b1_R2.fq.gz,fastq fastq,6368555100.0,21228517.0,b1 R1.fq.gz,0:150 1:150,A:1748027301;C:1419234076;G:1440533749;T:1760617536;N:142438,150,150,,,1748027301,1419234076,1440533749,1760617536,142438,SRX13426039,SRS11327032,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.93385,0.93455,0.09654,0.09586,0.70031,0.70274,0.4679,0.47428,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Juvenile,Juvenile,Skin,Surface Structure 67680,SRR17247013,SRX13426038,SRS11327030,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,D3,,isolate:not collected|age:3mpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate D3|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S343,S343,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,d3_R2.fq.gz d3_R1.fq.gz,fastq fastq,4661307000.0,15537690.0,d3 R1.fq.gz,0:150 1:150,A:1335395274;C:980634616;G:990646677;T:1354525081;N:105352,150,150,,,1335395274,980634616,990646677,1354525081,105352,SRX13426038,SRS11327030,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.55593,0.55991,0.04498,0.04594,0.79884,0.80079,0.51906,0.50799,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Adult,Adult,Skin,Surface Structure 67681,SRR17247014,SRX13426037,SRS11327031,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,A2,,isolate:not collected|age:17dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate A2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S334,S334,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,A2_S58_R1_001.fastq.gz A2_S58_R2_001.fastq.gz,fastq fastq,5616555000.0,18721850.0,A2 S58 R1 001.fastq.gz,0:150 1:150,A:1448598133;C:1350283389;G:1368707125;T:1446502716;N:2463637,150,150,,,1448598133,1350283389,1368707125,1446502716,2463637,SRX13426037,SRS11327031,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.96958,0.97206,0.03246,0.03194,0.74659,0.74809,0.48122,0.48632,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Larval,Larval,Skin,Surface Structure 67682,SRR17247015,SRX13426036,SRS11327029,SRP351072,PRJNA789095,Danio rerio Raw sequence reads,PRJNA789095,Whole Genome Sequencing,normal of RNA seq of danio rerio,,,,,A1,,isolate:not collected|age:17dpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate A1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of danio rerio,S333,S333,normal RNA seq of danio rerio,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP351072,,,A1_S57_R1_001.fastq.gz A1_S57_R2_001.fastq.gz,fastq fastq,4007594400.0,13358648.0,A1 S57 R1 001.fastq.gz,0:150 1:150,A:1045509577;C:951632697;G:972694338;T:1035964441;N:1793347,150,150,,,1045509577,951632697,972694338,1035964441,1793347,SRX13426036,SRS11327029,SRA1344321,shanghai ocean university|college of marine sciences,shanghai ocean university,2,0.96027,0.96204,0.03269,0.03149,0.76686,0.76749,0.44581,0.46233,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2021-12-16,Larval,Larval,Skin,Surface Structure 71771,SRR22094615,SRX18074634,SRS15579669,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,replicate,SEC 21dpf r,SEC 21dpf r,,strain:EK|age:21dpf|dev stage:21dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 21dpf replicate,LTS21 YW06,LTS21 YW06,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YW06_S8_L001_R1_001.fastq.gz LTS21_YW06_S8_L001_R2_001.fastq.gz,fastq fastq,18884108924.0,62530162.0,LTS21 YW06 S8 L001 R1 001.fastq.gz,0:151 1:151,A:4928408237;C:4582387963;G:4378535805;T:4978379185;N:16397734,151,151,,,4928408237,4582387963,4378535805,4978379185,16397734,SRX18074634,SRS15579669,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.78046,0.77311,0.03967,0.03852,0.76834,0.76962,0.48776,0.49055,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Larval,Larval,Skin,Surface Structure 71772,SRR22094620,SRX18074633,SRS15579668,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,,SEC 21dpf,Zebrafish SEC 21dpf,,strain:EK|age:21dpf|dev stage:21dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 21dpf,LTS21 YW05,LTS21 YW05,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YW05_S7_L001_R1_001.fastq.gz LTS21_YW05_S7_L001_R2_001.fastq.gz,fastq fastq,19711202968.0,65268884.0,LTS21 YW05 S7 L001 R1 001.fastq.gz,0:151 1:151,A:5117592567;C:4797244360;G:4551347423;T:5228007671;N:17010947,151,151,,,5117592567,4797244360,4551347423,5228007671,17010947,SRX18074633,SRS15579668,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.76712,0.76186,0.039,0.03769,0.76637,0.76692,0.45633,0.4647,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Larval,Larval,Skin,Surface Structure 71773,SRR22094616,SRX18074632,SRS15579667,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,replicate,SEC 14dpf r,SEC 14dpf r,,strain:EK|age:14dpf|dev stage:14dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 14dpf replicate,LTS21 YW04,LTS21 YW04,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YW04_S6_L001_R1_001.fastq.gz LTS21_YW04_S6_L001_R2_001.fastq.gz,fastq fastq,18505626216.0,61276908.0,LTS21 YW04 S6 L001 R1 001.fastq.gz,0:151 1:151,A:4873584588;C:4461374730;G:4234634486;T:4920008051;N:16024361,151,151,,,4873584588,4461374730,4234634486,4920008051,16024361,SRX18074632,SRS15579667,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.76819,0.76283,0.05352,0.05251,0.76765,0.76838,0.50479,0.49192,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Larval,Larval,Skin,Surface Structure 71774,SRR22094619,SRX18074631,SRS15579666,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,,SEC 14dpf,Zebrafish SEC 14dpf,,strain:EK|age:14dpf|dev stage:14dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 14dpf,LTS21 YW03,LTS21 YW03,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YW03_S5_L001_R1_001.fastq.gz LTS21_YW03_S5_L001_R2_001.fastq.gz,fastq fastq,20010150956.0,66258778.0,LTS21 YW03 S5 L001 R1 001.fastq.gz,0:151 1:151,A:5185539519;C:4876294580;G:4677668447;T:5253656025;N:16992385,151,151,,,5185539519,4876294580,4677668447,5253656025,16992385,SRX18074631,SRS15579666,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.78205,0.77596,0.04076,0.03939,0.78248,0.78293,0.4586,0.46807,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Larval,Larval,Skin,Surface Structure 71775,SRR22094617,SRX18074630,SRS15579665,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,replicate,SEC 6dpf r,SEC 6dpf r,,strain:EK|age:6dpf|dev stage:6dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 6dpf replicate,LTS21 YW02,LTS21 YW02,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YW02_S4_L001_R1_001.fastq.gz LTS21_YW02_S4_L001_R2_001.fastq.gz,fastq fastq,20220291918.0,66954609.0,LTS21 YW02 S4 L001 R1 001.fastq.gz,0:151 1:151,A:5407749316;C:4807063001;G:4510753168;T:5477213837;N:17512596,151,151,,,5407749316,4807063001,4510753168,5477213837,17512596,SRX18074630,SRS15579665,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.74742,0.74156,0.05378,0.05283,0.75118,0.75183,0.49329,0.49679,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Larval,Larval,Skin,Surface Structure 71776,SRR22094618,SRX18074629,SRS15579664,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,,SEC 6dpf,Zebrafish SEC 6dpf,,strain:EK|age:6dpf|dev stage:6dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 6dpf,LTS21 YG02,LTS21 YG02,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YG02_S2_L001_R1_001.fastq.gz LTS21_YG02_S2_L001_R2_001.fastq.gz,fastq fastq,20584419962.0,68160331.0,LTS21 YG02 S2 L001 R1 001.fastq.gz,0:151 1:151,A:5411222042;C:4935924238;G:4703040707;T:5516534305;N:17698670,151,151,,,5411222042,4935924238,4703040707,5516534305,17698670,SRX18074629,SRS15579664,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.76895,0.7633,0.03985,0.03893,0.76481,0.76607,0.46945,0.46388,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Larval,Larval,Skin,Surface Structure 71777,SRR22094621,SRX18074628,SRS15579663,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,replicate,SEC 2dpf r,SEC 2dpf r,,strain:EK|age:2dpf|dev stage:2dpf|sex:NA|tissue:skin superficial epithelial cell|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 2dpf replicate,LTS21 YW01,LTS21 YW01,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YW01_S3_L001_R1_001.fastq.gz LTS21_YW01_S3_L001_R2_001.fastq.gz,fastq fastq,19999530824.0,66223612.0,LTS21 YW01 S3 L001 R1 001.fastq.gz,0:151 1:151,A:5239226851;C:4832853944;G:4579224440;T:5331222900;N:17002689,151,151,,,5239226851,4832853944,4579224440,5331222900,17002689,SRX18074628,SRS15579663,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.77399,0.76874,0.04763,0.04655,0.75035,0.75087,0.423,0.42383,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Hatching,Embryo,Skin,Surface Structure 71778,SRR22094622,SRX18074627,SRS15579662,SRP405171,PRJNA893397,RNA sequencing of the zebrafish superficial epithelial cells,PRJNA893397,Other,"We discovered that the superficial epithelial cells SECs of zebrafish larvae could adapt a unique kind of cell division during rapid growth conditions. We termed it ""asynthetic fission"". We determined that asynthetic fission occurs in the absence of DNA replication generating progeny cells with reduced genome size. Here we aim to define the transcriptional landscape of the SECs during asynthetic fission by applying RNA sequencing.",,,,SEC 2dpf,Zebrafish SEC 2dpf,,strain:EK|age:2dpf|dev stage:2dpf|sex:NA|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA sequencing of zebrafish:superficial epithelial cells 2dpf,LTS21 YG01,LTS21 YG01,100 150 larvae at 2 dpf 6 dpf 14 dpf and 21 dpf were first rinsed with 1x DPBS Gibco 14190 144 then digested with collagenase Sigma C9891 and 0.25% trypsin EDTA Sigma T4049. Digestion was stopped with DMEM Gibco 11995 065 with 10% NCS and rinsed with 1 x DPBS. Then cells were suspended in DMEM 10% NCS and filtered with a 35 m cell strainer tube. Dissociated cells were stained with PI 1 g/ml for 106 cells per mL for 5 min in the dark. All EGFP+ and PI cells were sorted by FACSAria IIIu BD Biosciences. Cells were directly sorted in buffer RLT supplemented with 1% mercapto ethanol provided in RNeasy Micro kit Qiagen and stored in 80 C until RNA extraction was performed. Total 2 replicates for each timepoint were collected. RNA extraction was carried out using RNeasy Micro kit according to manufacturers instructions. Sequencing was performed by the NGS High Throughput Genomics Core in Biodiversity Research Center Academia Sinica Taiwan using Illumina NextSeq2000 with paired end 2 x 150 bp chemistry and a library selection of low input stranded RNA library preparation Poly A.,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 2000,,SRP405171,,,LTS21_YG01_S1_L001_R1_001.fastq.gz LTS21_YG01_S1_L001_R2_001.fastq.gz,fastq fastq,18171646530.0,60171015.0,LTS21 YG01 S1 L001 R1 001.fastq.gz,0:151 1:151,A:4727063040;C:4426085600;G:4200458773;T:4802148545;N:15890572,151,151,,,4727063040,4426085600,4200458773,4802148545,15890572,SRX18074627,SRS15579662,SRA1530145,Academia Sinica|Institute of Cellular and Organismic Biology,Academia Sinica,2,0.76303,0.75602,0.03268,0.03163,0.78427,0.78484,0.3601,0.35972,151,151,B,B,biological fallback assumption,illumina,nextseq_v2,unknown,poly_a,unknown,bulk,unknown,unknown,,Taiwan,2022-10-29,Hatching,Embryo,Skin,Surface Structure