rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 63895,SRR14213371,SRX10579916,SRS8684384,SRP314470,PRJNA721381,RNA Seq from zebrafish adult tissues,GSE171906,Transcriptome Analysis,The goal of this study was to profile transcript expression levels across zebrafish adult tissues. Overall design: Transcriptome profiles of nine zebrafish adult tissues. Every tissue contains triplicates.,,pubmed:34556579,,Spleen3,GSM5237140,,source name:zebrafish spleen|genotype:wild type|tissue:spleen|strain:TLAB,Spleen3,Libraries were sequenced on a Illumina Hiseq 2500 on SR100 mode BAM files containing sequencing reads were converted to fastq files using samtools v1.9 Barcoded libraries were demultiplexed using fastx toolkit v0.0.14 Sequencing adapters were trimmed with cutadapt v1.18 and only reads longer than 25 bases were kept Reads were aligned to GRCz11 with Hisat2 v2.1.0 using the Ensembl transcriptome release 102. The following parameters were used: hisat2 q dta rna strandness R k 12 no unal Quantification at the gene level to obtain transcript per million TPM was perfomed using Kallisto v0.43.0 Genome build: GRCz11 Supplementary files format and content: Tab delimited files containing TPM,zebrafish spleen,,Total RNA was extracted using the standard TRIzol Invitrogen protocol. To obtain polyA+ RNA the polyA selection kit from LEXOGEN was used. Strand specific cDNA libraries were generated using NEBNext Ultra Directional RNA Library Prep Kit for Illumina and indexed with NEBNext Multiplex Oligos for Illumina,Zebrafish Danio rerio were raised according to standard protocols 28°C water temperature; 14/10 hour light/dark cycle,genotype:wild type|tissue:spleen|strain:TLAB,GSM5237140,GSM5237140: Spleen3; Danio rerio; RNA Seq,GSM5237140,,1,Total RNA was extracted using the standard TRIzol Invitrogen protocol. To obtain polyA+ RNA the polyA selection kit from LEXOGEN was used. Strand specific cDNA libraries were generated using NEBNext Ultra Directional RNA Library Prep Kit for Illumina and indexed with NEBNext Multiplex Oligos for Illumina,GEO Accession:GSM5237140,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP314470,,,Spleen3.fastq,fastq,2469245600.0,24692456.0,GSM5237140 r1,0:100,A:595265067;C:649103304;G:625399353;T:599383209;N:94667,100,,,,595265067,649103304,625399353,599383209,94667,SRX10579916,SRS8684384,SRA1217576,GEO,"Pauli lab, Research Institute of Molecular Pathology",1,0.9388,,0.16508,,0.75205,,0.59719,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,nebnext,bulk,unknown,unknown,,Austria,2021-04-12,Undetermined,Undetermined,Spleen,Hematopoietic System 63896,SRR14213370,SRX10579915,SRS8684383,SRP314470,PRJNA721381,RNA Seq from zebrafish adult tissues,GSE171906,Transcriptome Analysis,The goal of this study was to profile transcript expression levels across zebrafish adult tissues. Overall design: Transcriptome profiles of nine zebrafish adult tissues. Every tissue contains triplicates.,,pubmed:34556579,,Spleen2,GSM5237139,,source name:zebrafish spleen|genotype:wild type|tissue:spleen|strain:TLAB,Spleen2,Libraries were sequenced on a Illumina Hiseq 2500 on SR100 mode BAM files containing sequencing reads were converted to fastq files using samtools v1.9 Barcoded libraries were demultiplexed using fastx toolkit v0.0.14 Sequencing adapters were trimmed with cutadapt v1.18 and only reads longer than 25 bases were kept Reads were aligned to GRCz11 with Hisat2 v2.1.0 using the Ensembl transcriptome release 102. The following parameters were used: hisat2 q dta rna strandness R k 12 no unal Quantification at the gene level to obtain transcript per million TPM was perfomed using Kallisto v0.43.0 Genome build: GRCz11 Supplementary files format and content: Tab delimited files containing TPM,zebrafish spleen,,Total RNA was extracted using the standard TRIzol Invitrogen protocol. To obtain polyA+ RNA the polyA selection kit from LEXOGEN was used. Strand specific cDNA libraries were generated using NEBNext Ultra Directional RNA Library Prep Kit for Illumina and indexed with NEBNext Multiplex Oligos for Illumina,Zebrafish Danio rerio were raised according to standard protocols 28°C water temperature; 14/10 hour light/dark cycle,genotype:wild type|tissue:spleen|strain:TLAB,GSM5237139,GSM5237139: Spleen2; Danio rerio; RNA Seq,GSM5237139,,1,Total RNA was extracted using the standard TRIzol Invitrogen protocol. To obtain polyA+ RNA the polyA selection kit from LEXOGEN was used. Strand specific cDNA libraries were generated using NEBNext Ultra Directional RNA Library Prep Kit for Illumina and indexed with NEBNext Multiplex Oligos for Illumina,GEO Accession:GSM5237139,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP314470,,,Spleen2.fastq,fastq,1372663100.0,13726631.0,GSM5237139 r1,0:100,A:303080845;C:392345861;G:369765807;T:307418421;N:52166,100,,,,303080845,392345861,369765807,307418421,52166,SRX10579915,SRS8684383,SRA1217576,GEO,"Pauli lab, Research Institute of Molecular Pathology",1,0.96541,,0.18478,,0.78565,,0.60522,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,nebnext,bulk,unknown,unknown,,Austria,2021-04-12,Undetermined,Undetermined,Spleen,Hematopoietic System 63897,SRR14213369,SRX10579914,SRS8684382,SRP314470,PRJNA721381,RNA Seq from zebrafish adult tissues,GSE171906,Transcriptome Analysis,The goal of this study was to profile transcript expression levels across zebrafish adult tissues. Overall design: Transcriptome profiles of nine zebrafish adult tissues. Every tissue contains triplicates.,,pubmed:34556579,,Spleen1,GSM5237138,,source name:zebrafish spleen|genotype:wild type|tissue:spleen|strain:TLAB,Spleen1,Libraries were sequenced on a Illumina Hiseq 2500 on SR100 mode BAM files containing sequencing reads were converted to fastq files using samtools v1.9 Barcoded libraries were demultiplexed using fastx toolkit v0.0.14 Sequencing adapters were trimmed with cutadapt v1.18 and only reads longer than 25 bases were kept Reads were aligned to GRCz11 with Hisat2 v2.1.0 using the Ensembl transcriptome release 102. The following parameters were used: hisat2 q dta rna strandness R k 12 no unal Quantification at the gene level to obtain transcript per million TPM was perfomed using Kallisto v0.43.0 Genome build: GRCz11 Supplementary files format and content: Tab delimited files containing TPM,zebrafish spleen,,Total RNA was extracted using the standard TRIzol Invitrogen protocol. To obtain polyA+ RNA the polyA selection kit from LEXOGEN was used. Strand specific cDNA libraries were generated using NEBNext Ultra Directional RNA Library Prep Kit for Illumina and indexed with NEBNext Multiplex Oligos for Illumina,Zebrafish Danio rerio were raised according to standard protocols 28°C water temperature; 14/10 hour light/dark cycle,genotype:wild type|tissue:spleen|strain:TLAB,GSM5237138,GSM5237138: Spleen1; Danio rerio; RNA Seq,GSM5237138,,1,Total RNA was extracted using the standard TRIzol Invitrogen protocol. To obtain polyA+ RNA the polyA selection kit from LEXOGEN was used. Strand specific cDNA libraries were generated using NEBNext Ultra Directional RNA Library Prep Kit for Illumina and indexed with NEBNext Multiplex Oligos for Illumina,GEO Accession:GSM5237138,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP314470,,,Spleen1.fastq,fastq,2268815600.0,22688156.0,GSM5237138 r1,0:100,A:570901318;C:562128594;G:552921437;T:582778510;N:85741,100,,,,570901318,562128594,552921437,582778510,85741,SRX10579914,SRS8684382,SRA1217576,GEO,"Pauli lab, Research Institute of Molecular Pathology",1,0.93633,,0.14981,,0.72825,,0.52073,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,poly_a,nebnext,bulk,unknown,unknown,,Austria,2021-04-12,Undetermined,Undetermined,Spleen,Hematopoietic System 71972,SRR22163682,SRX18142568,SRS15644032,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,C3,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:control|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,C3,C3,control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,C3.R1.fastq.gz C3.R2.fastq.gz,fastq fastq,6777299176.0,22441388.0,C3.R1.fastq.gz,0:151 1:151,A:1869146927;C:1513142912;G:1565477798;T:1829395893;N:135646,151,151,,,1869146927,1513142912,1565477798,1829395893,135646,SRX18142568,SRS15644032,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.91581,0.91452,0.09416,0.09344,0.71167,0.71338,0.50247,0.50311,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71973,SRR22163683,SRX18142567,SRS15644031,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,C2,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:control|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,C2,C2,control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,C2.R1.fastq.gz C2.R2.fastq.gz,fastq fastq,6956425644.0,23034522.0,C2.R1.fastq.gz,0:151 1:151,A:1847551873;C:1616308106;G:1662475314;T:1829952767;N:137584,151,151,,,1847551873,1616308106,1662475314,1829952767,137584,SRX18142567,SRS15644031,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93033,0.9312,0.056,0.05619,0.71261,0.71376,0.4668,0.47014,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71974,SRR22163684,SRX18142566,SRS15644030,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,C1,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:control|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,C1,C1,control group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,C1.R1.fastq.gz C1.R2.fastq.gz,fastq fastq,6218689172.0,20591686.0,C1.R1.fastq.gz,0:151 1:151,A:1651743119;C:1444992966;G:1490934383;T:1630891482;N:127222,151,151,,,1651743119,1444992966,1490934383,1630891482,127222,SRX18142566,SRS15644030,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93571,0.93627,0.03427,0.0346,0.73336,0.73401,0.47064,0.47601,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71975,SRR22163685,SRX18142565,SRS15644029,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,B3,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:challenge|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,B3,B3,challenge group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,B3.R1.fastq.gz B3.R2.fastq.gz,fastq fastq,7958268062.0,26351881.0,B3.R1.fastq.gz,0:151 1:151,A:2067039750;C:1894612680;G:1943559820;T:2052891379;N:164433,151,151,,,2067039750,1894612680,1943559820,2052891379,164433,SRX18142565,SRS15644029,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93754,0.93809,0.03309,0.03347,0.71762,0.71731,0.49012,0.4888,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71976,SRR22163686,SRX18142564,SRS15644028,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,B2,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:challenge|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,B2,B2,challenge group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,B2.R1.fastq.gz B2.R2.fastq.gz,fastq fastq,7071097158.0,23414229.0,B2.R1.fastq.gz,0:151 1:151,A:1862299896;C:1658740196;G:1713471478;T:1836444697;N:140891,151,151,,,1862299896,1658740196,1713471478,1836444697,140891,SRX18142564,SRS15644028,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.94335,0.94369,0.04139,0.04172,0.80405,0.80415,0.39649,0.39674,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71977,SRR22163687,SRX18142563,SRS15644027,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,B1,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:challenge|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,B1,B1,challenge group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,B1.R1.fastq.gz B1.R2.fastq.gz,fastq fastq,7597788178.0,25158239.0,B1.R1.fastq.gz,0:151 1:151,A:1986638730;C:1797302173;G:1839273564;T:1974418679;N:155032,151,151,,,1986638730,1797302173,1839273564,1974418679,155032,SRX18142563,SRS15644027,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93891,0.93921,0.04922,0.04888,0.74552,0.74501,0.48725,0.49058,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71978,SRR22163688,SRX18142562,SRS15644026,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,A3,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:treatment|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,A3,A3,treatment group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,A3.R1.fastq.gz A3.R2.fastq.gz,fastq fastq,8674550152.0,28723676.0,A3.R1.fastq.gz,0:151 1:151,A:2234032232;C:2083164440;G:2128058461;T:2229111717;N:183302,151,151,,,2234032232,2083164440,2128058461,2229111717,183302,SRX18142562,SRS15644026,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93839,0.93828,0.01889,0.01887,0.73639,0.73724,0.48841,0.47397,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71979,SRR22163689,SRX18142561,SRS15644025,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,A2,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:treatment|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,A2,A2,treatment group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,A2.R1.fastq.gz A2.R2.fastq.gz,fastq fastq,7383660816.0,24449208.0,A2.R1.fastq.gz,0:151 1:151,A:1917884453;C:1759507724;G:1796259178;T:1909857526;N:151935,151,151,,,1917884453,1759507724,1796259178,1909857526,151935,SRX18142561,SRS15644025,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93853,0.93854,0.02662,0.02663,0.71435,0.7149,0.49509,0.49212,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System 71980,SRR22163690,SRX18142560,SRS15644024,SRP405990,PRJNA897077,Transcriptome of zebrafish Danio rerio,PRJNA897077,Other,Zebrafish Danio rerio have been used as a model organism to study innate immune system and hostpathogen interactions. Until now the information related to the immune system against A. hydrophila of zebrafish and the treatment by probiotics is incomplete. To increase knowledge of the molecular mechanisms of the host defense against A. hydrophila and provide evidence that antibiotics can replace by probiotics we conducted transcriptome analysis of spleen in zebrafish 48 h post infection and treatment by Lactococcus lactis post 4h post infection via sequencing.,,,,,A1,,strain:not applicable|age:not collected|sex:not collected|tissue:spleen|treatment:treatment|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Danio rerio,A1,A1,treatment group,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP405990,,,A1.R1.fastq.gz A1.R2.fastq.gz,fastq fastq,7734454352.0,25610776.0,A1.R1.fastq.gz,0:151 1:151,A:2031967267;C:1817027018;G:1866115793;T:2019187811;N:156463,151,151,,,2031967267,1817027018,1866115793,2019187811,156463,SRX18142560,SRS15644024,SRA1532870,Kunming University of Science and Technology|Faculty of Life Science and Technology,Kunming University of Science and Technology,2,0.93755,0.93728,0.03692,0.03688,0.71664,0.71693,0.48577,0.48719,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2022-11-02,Undetermined,Undetermined,Spleen,Hematopoietic System