rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 10391,ERR8516975,ERX8083451,ERS10521298,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling neurite,SAMEA12922152,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922152|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Sibling neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling neurite p,Sibling neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X4_190227_A00421_38_AH7523DRXX_S56_R1_001.fastq.gz 15812X4_190227_A00421_38_AH7523DRXX_S56_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X4 190227 A00421 38 AH7523DRXX S56 R,0:51 1:51,A:1077092958;C:949537387;G:955020348;T:1099432979;N:20556852,51,51,,,1077092958,949537387,955020348,1099432979,20556852,ERX8083451,ERS10521298,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.9053,0.9259,0.21658,0.22155,0.69369,0.69179,0.50726,0.50871,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10392,ERR8516976,ERX8083451,ERS10521298,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling neurite,SAMEA12922152,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922152|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Sibling neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling neurite p,Sibling neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X5_190227_A00421_38_AH7523DRXX_S55_R1_001.fastq.gz 15812X5_190227_A00421_38_AH7523DRXX_S55_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X5 190227 A00421 38 AH7523DRXX S55 R,0:51 1:51,A:972081222;C:890179393;G:888655698;T:998443264;N:18934747,51,51,,,972081222,890179393,888655698,998443264,18934747,ERX8083451,ERS10521298,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.86107,0.87807,0.22063,0.23029,0.70859,0.70561,0.51656,0.51946,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10393,ERR8516977,ERX8083451,ERS10521298,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling neurite,SAMEA12922152,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922152|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Sibling neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling neurite p,Sibling neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X6_190227_A00421_38_AH7523DRXX_S54_R1_001.fastq.gz 15812X6_190227_A00421_38_AH7523DRXX_S54_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X6 190227 A00421 38 AH7523DRXX S54 R,0:51 1:51,A:728798881;C:962223604;G:958876331;T:735449513;N:17094231,51,51,,,728798881,962223604,958876331,735449513,17094231,ERX8083451,ERS10521298,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.54616,0.55881,0.13313,0.14036,0.84295,0.84185,0.64193,0.59762,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10394,ERR8516972,ERX8083450,ERS10521297,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling cellular,SAMEA12922151,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922151|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Sibling cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling cellular p,Sibling cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X1_190227_A00421_38_AH7523DRXX_S59_R1_001.fastq.gz 15812X1_190227_A00421_38_AH7523DRXX_S59_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X1 190227 A00421 38 AH7523DRXX S59 R,0:51 1:51,A:837274632;C:1062368015;G:1049892288;T:853310517;N:19213786,51,51,,,837274632,1062368015,1049892288,853310517,19213786,ERX8083450,ERS10521297,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.5726,0.57788,0.13781,0.14082,0.80616,0.80452,0.61581,0.60389,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10395,ERR8516973,ERX8083450,ERS10521297,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling cellular,SAMEA12922151,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922151|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Sibling cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling cellular p,Sibling cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X2_190227_A00421_38_AH7523DRXX_S58_R1_001.fastq.gz 15812X2_190227_A00421_38_AH7523DRXX_S58_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X2 190227 A00421 38 AH7523DRXX S58 R,0:51 1:51,A:897813231;C:796012893;G:794839496;T:923696030;N:17221274,51,51,,,897813231,796012893,794839496,923696030,17221274,ERX8083450,ERS10521297,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.92095,0.94156,0.18892,0.20024,0.6901,0.68905,0.49377,0.50086,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10396,ERR8516974,ERX8083450,ERS10521297,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Sibling cellular,SAMEA12922151,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922151|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Sibling cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq sibling +/+ and +/ |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Sibling cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Sibling cellular p,Sibling cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq sibling +/+ and +/ |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X3_190227_A00421_38_AH7523DRXX_S57_R1_001.fastq.gz 15812X3_190227_A00421_38_AH7523DRXX_S57_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X3 190227 A00421 38 AH7523DRXX S57 R,0:51 1:51,A:951912827;C:1107150666;G:1086060798;T:973791571;N:20785248,51,51,,,951912827,1107150666,1086060798,973791571,20785248,ERX8083450,ERS10521297,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.63792,0.62667,0.18547,0.18671,0.78756,0.78549,0.59274,0.55478,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10397,ERR8516969,ERX8083449,ERS10521296,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null neurite,SAMEA12922150,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922150|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Null neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null neurite p,Null neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X10_190227_A00421_38_AH7523DRXX_S48_R1_001.fastq.gz 15812X10_190227_A00421_38_AH7523DRXX_S48_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X10 190227 A00421 38 AH7523DRXX S48 R,0:51 1:51,A:925784769;C:934445856;G:959155668;T:924080408;N:18878983,51,51,,,925784769,934445856,959155668,924080408,18878983,ERX8083449,ERS10521296,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.59503,0.61112,0.1947,0.20225,0.76512,0.76337,0.54584,0.54345,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10398,ERR8516970,ERX8083449,ERS10521296,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null neurite,SAMEA12922150,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922150|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Null neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null neurite p,Null neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X11_190227_A00421_38_AH7523DRXX_S52_R1_001.fastq.gz 15812X11_190227_A00421_38_AH7523DRXX_S52_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X11 190227 A00421 38 AH7523DRXX S52 R,0:51 1:51,A:991755033;C:864808531;G:892202564;T:992188806;N:18881958,51,51,,,991755033,864808531,892202564,992188806,18881958,ERX8083449,ERS10521296,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.86612,0.88689,0.26181,0.2728,0.7094,0.7091,0.53639,0.53906,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10399,ERR8516971,ERX8083449,ERS10521296,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null neurite,SAMEA12922150,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922150|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null neurite|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neurite|sample name:E MTAB 11431:Null neurite,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null neurite p,Null neurite p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neurite,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X12_190227_A00421_38_AH7523DRXX_S50_R1_001.fastq.gz 15812X12_190227_A00421_38_AH7523DRXX_S50_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X12 190227 A00421 38 AH7523DRXX S50 R,0:51 1:51,A:766707527;C:798667604;G:818782599;T:773280942;N:15938306,51,51,,,766707527,798667604,818782599,773280942,15938306,ERX8083449,ERS10521296,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.88811,0.92834,0.21869,0.22669,0.72878,0.72604,0.55598,0.57831,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10400,ERR8516966,ERX8083448,ERS10521295,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null cellular,SAMEA12922149,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922149|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Null cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null cellular p,Null cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X7_190227_A00421_38_AH7523DRXX_S53_R1_001.fastq.gz 15812X7_190227_A00421_38_AH7523DRXX_S53_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X7 190227 A00421 38 AH7523DRXX S53 R,0:51 1:51,A:774360373;C:720215184;G:719479745;T:796239200;N:15182374,51,51,,,774360373,720215184,719479745,796239200,15182374,ERX8083448,ERS10521295,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.79643,0.81194,0.25554,0.2603,0.72236,0.72021,0.51775,0.51678,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10401,ERR8516967,ERX8083448,ERS10521295,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null cellular,SAMEA12922149,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922149|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Null cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null cellular p,Null cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X8_190227_A00421_38_AH7523DRXX_S51_R1_001.fastq.gz 15812X8_190227_A00421_38_AH7523DRXX_S51_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X8 190227 A00421 38 AH7523DRXX S51 R,0:51 1:51,A:739921027;C:667375549;G:663864111;T:764302396;N:14288091,51,51,,,739921027,667375549,663864111,764302396,14288091,ERX8083448,ERS10521295,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.90817,0.92909,0.23387,0.24814,0.70088,0.69842,0.51238,0.51267,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 10402,ERR8516968,ERX8083448,ERS10521295,ERP135383,PRJEB50776,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E-MTAB-11431,Other,Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19,,Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Null cellular,SAMEA12922149,"Centre for Developmental Neurobiology, King's College London",ENA first public:2022 02 19|ENA last update:2022 02 19|External Id:SAMEA12922149|INSDC center alias:Centre for Developmental Neurobiology King's College London|INSDC center name:Centre for Developmental Neurobiology King's College London|INSDC first public:2022 02 19T00:15:43Z|INSDC last update:2022 02 19T00:15:43Z|INSDC status:public|Submitter Id:E MTAB 11431:Null cellular|broker name:ArrayExpress|common name:zebrafish|genotype:sfpq null / |growth condition:transwell culture|organism part:neuron|sample name:E MTAB 11431:Null cellular,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,E MTAB 11431:Null cellular p,Null cellular p,Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion,Experimental Factor: genotype:sfpq null / |Experimental Factor: organism part:neuron,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,ERP135383,Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue,ENA FIRST PUBLIC:2022 02 19|ENA LAST UPDATE:2022 02 19|loader:fastq load.py,15812X9_190227_A00421_38_AH7523DRXX_S49_R1_001.fastq.gz 15812X9_190227_A00421_38_AH7523DRXX_S49_R2_001.fastq.gz,fastq fastq,,,E MTAB 11431:15812X9 190227 A00421 38 AH7523DRXX S49 R,0:51 1:51,A:882831441;C:935213418;G:957033335;T:879085993;N:18444957,51,51,,,882831441,935213418,957033335,879085993,18444957,ERX8083448,ERS10521295,ERA8932807,"Centre for Developmental Neurobiology, King","Centre for Developmental Neurobiology, King",2,0.76218,0.7682,0.18357,0.18521,0.74444,0.74272,0.46714,0.55518,51,51,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,ribozero,bulk,bulk,bulk,,United Kingdom,2022-02-19,Undetermined,Undetermined,Brain,Nervous System 48909,SRR7615221,SRX4479802,SRS3604791,SRP155604,PRJNA479418,Lariat intronic RNAs in the cytoplasm of vertebrate cells,PRJNA479418,Other,Introns are non coding DNA sequences interspersed among the coding sequences of genes. Shortly post transcription the intronic sequences are spliced out of the primary RNA transcript as lariat RNAs circular molecules with a short tail. Most of these lariats are destroyed within minutes in the cell nucleus. We report here that many such intronic RNAs are in fact exported to the cytoplasm where they remain as stable circular molecules. These cytoplasmic introns are derived from hundreds of different genes of widely different functions. We find them in cells of human mouse chicken frog and zebrafish. The widespread occurrence of so many stable lariat RNAs in the cytoplasm suggests that they play some as yet unexpected role in cell metabolism.,,,,,zebrafish eggs plusRNaseR,,strain:AB strain|dev stage:Germline|sex:female|tissue:Egg|treatment:n1|rna treatment:rRNA depletion and RNase R|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Zebrafish egg plus RNaseR,Zf pR,Zf pR,rRNA depletion ribozero fellowed by TruSeq Stranded Total RNA illumina,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP155604,,,150112_Zebrafish_egg_plusRNaseR_50bp.fastq,fastq,1453087900.0,29061758.0,150112 Zebrafish egg plusRNaseR 50bp.fastq,0:50,A:316388483;C:426462939;G:363020331;T:347178488;N:37659,50,,,,316388483,426462939,363020331,347178488,37659,SRX4479802,SRS3604791,SRA746415,Carnegie Institution for Science|Department of Embryology,Carnegie Institution for Science,1,0.83263,,0.31979,,0.81592,,0.51542,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,ribozero,bulk,unknown,unknown,,United States,2018-07-28,Undetermined,Undetermined,Undetermined,Undetermined 48910,SRR7615223,SRX4479800,SRS3604789,SRP155604,PRJNA479418,Lariat intronic RNAs in the cytoplasm of vertebrate cells,PRJNA479418,Other,Introns are non coding DNA sequences interspersed among the coding sequences of genes. Shortly post transcription the intronic sequences are spliced out of the primary RNA transcript as lariat RNAs circular molecules with a short tail. Most of these lariats are destroyed within minutes in the cell nucleus. We report here that many such intronic RNAs are in fact exported to the cytoplasm where they remain as stable circular molecules. These cytoplasmic introns are derived from hundreds of different genes of widely different functions. We find them in cells of human mouse chicken frog and zebrafish. The widespread occurrence of so many stable lariat RNAs in the cytoplasm suggests that they play some as yet unexpected role in cell metabolism.,,,,,zebrafish eggs minusRNaseR,,strain:AB strain|dev stage:Germline|sex:female|tissue:Egg|treatment:n1|rna treatment:rRNA depletion|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of Zebrafish egg minus RNaseR,Zf mR,Zf mR,rRNA depletion ribozero fellowed by TruSeq Stranded Total RNA illumina,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ILLUMINA,Illumina HiSeq 2000,,SRP155604,,,150112_Zebrafish_egg_minusRNaseR_50bp.fastq,fastq,2440809700.0,48816194.0,150112 Zebrafish egg minusRNaseR 50bp.fastq,0:50,A:588729472;C:623954878;G:556893764;T:671166713;N:64873,50,,,,588729472,623954878,556893764,671166713,64873,SRX4479800,SRS3604789,SRA746415,Carnegie Institution for Science|Department of Embryology,Carnegie Institution for Science,1,0.92096,,0.07705,,0.72861,,0.50081,,50,,B,,usable mapping rate,illumina,hiseq_era,unknown,random_priming,ribozero,bulk,unknown,unknown,,United States,2018-07-28,Undetermined,Undetermined,Undetermined,Undetermined 68109,SRR17600926,SRX13769748,SRS11649751,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,WT+E.coli1,WT+E.coli1,GF WT E1,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:WT+E.coli1|ID:10|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF WT E1,GF WT E1,WT+E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_WT_E1_Clean_Data1.fq.gz GF_WT_E1_Clean_Data2.fq.gz,fastq fastq,5722208611.0,20607920.0,GF WT E1 Clean Data1.fq.gz,0:138.84 1:138.83,A:1540223471;C:1318102846;G:1330098519;T:1533783551;N:224,138,138,,,1540223471,1318102846,1330098519,1533783551,224,SRX13769748,SRS11649751,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.94934,0.95004,0.10193,0.10143,0.67375,0.67298,0.47471,0.47424,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68110,SRR17600927,SRX13769747,SRS11649750,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,luxS+E.coli3,luxS+E.coli3,GF KO E3,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:luxS+E.coli3|ID:9|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF KO E3,GF KO E3,KO+E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_KO_E3_Clean_Data1.fq.gz GF_KO_E3_Clean_Data2.fq.gz,fastq fastq,5889250016.0,21144775.0,GF KO E3 Clean Data1.fq.gz,0:139.26 1:139.26,A:1620329671;C:1324010520;G:1330595847;T:1614313735;N:243,139,139,,,1620329671,1324010520,1330595847,1614313735,243,SRX13769747,SRS11649750,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.94698,0.94852,0.11876,0.11831,0.67495,0.67517,0.47639,0.48061,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68111,SRR17600928,SRX13769746,SRS11649749,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,luxS+E.coli2,luxS+E.coli2,GF KO E2,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:luxS+E.coli2|ID:8|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF KO E2,GF KO E2,KO+E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_KO_E2_Clean_Data1.fq.gz GF_KO_E2_Clean_Data2.fq.gz,fastq fastq,6504274425.0,23249789.0,GF KO E2 Clean Data1.fq.gz,0:139.88 1:139.87,A:1766001900;C:1480404718;G:1494298349;T:1763569217;N:241,139,139,,,1766001900,1480404718,1494298349,1763569217,241,SRX13769746,SRS11649749,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.94738,0.94849,0.10481,0.10434,0.67022,0.66918,0.46937,0.46181,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68112,SRR17600929,SRX13769745,SRS11649748,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,luxS+E.coli1,luxS+E.coli1,GF KO E1,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:luxS+E.coli1|ID:7|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF KO E1,GF KO E1,KO+E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_KO_E1_Clean_Data1.fq.gz GF_KO_E1_Clean_Data2.fq.gz,fastq fastq,6723052797.0,24155410.0,GF KO E1 Clean Data1.fq.gz,0:139.16 1:139.16,A:1841129365;C:1517886618;G:1529873607;T:1834162936;N:271,139,139,,,1841129365,1517886618,1529873607,1834162936,271,SRX13769745,SRS11649748,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.94667,0.94708,0.11716,0.11601,0.67521,0.67414,0.47792,0.47067,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68113,SRR17600930,SRX13769744,SRS11649747,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,E.coli3,E.coli3,GF E3,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:E.coli3|ID:6|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF E3,GF E3,E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_E3_Clean_Data1.fq.gz GF_E3_Clean_Data2.fq.gz,fastq fastq,4907699666.0,17532965.0,GF E3 Clean Data1.fq.gz,0:139.96 1:139.95,A:1313371994;C:1137331297;G:1142894993;T:1314101187;N:195,139,139,,,1313371994,1137331297,1142894993,1314101187,195,SRX13769744,SRS11649747,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.95257,0.95317,0.08924,0.08818,0.65906,0.65782,0.49004,0.49077,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68114,SRR17600931,SRX13769743,SRS11649746,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,E.coli2,E.coli2,GF E2,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:E.coli2|ID:5|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF E2,GF E2,E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_E2_Clean_Data1.fq.gz GF_E2_Clean_Data2.fq.gz,fastq fastq,5297962158.0,18917352.0,GF E2 Clean Data1.fq.gz,0:140.03 1:140.03,A:1418683575;C:1225022840;G:1234832199;T:1419423335;N:209,140,140,,,1418683575,1225022840,1234832199,1419423335,209,SRX13769743,SRS11649746,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.9504,0.95145,0.08893,0.08853,0.65884,0.65758,0.47798,0.48072,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68115,SRR17600932,SRX13769742,SRS11649745,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,E.coli1,E.coli1,GF E1,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:E.coli1|ID:4|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF E1,GF E1,E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_E1_Clean_Data1.fq.gz GF_E1_Clean_Data2.fq.gz,fastq fastq,5071249140.0,18130619.0,GF E1 Clean Data1.fq.gz,0:139.86 1:139.85,A:1349570050;C:1179084754;G:1191487646;T:1351106481;N:209,139,139,,,1349570050,1179084754,1191487646,1351106481,209,SRX13769742,SRS11649745,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.94788,0.95007,0.08632,0.08584,0.66312,0.66186,0.48354,0.47951,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68116,SRR17600933,SRX13769741,SRS11649744,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,CON3,CON3,GF3,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:germ free|ID:3|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF3,GF3,con,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF3_Clean_Data1.fq.gz GF3_Clean_Data2.fq.gz,fastq fastq,6819708063.0,24463230.0,GF3 Clean Data1.fq.gz,0:139.39 1:139.39,A:1807598117;C:1598304151;G:1610340377;T:1803465151;N:267,139,139,,,1807598117,1598304151,1610340377,1803465151,267,SRX13769741,SRS11649744,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.95386,0.95433,0.09938,0.09846,0.6759,0.67517,0.49818,0.49068,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68117,SRR17600934,SRX13769740,SRS11649743,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,WT+E.coli3,WT+E.coli3,GF WT E3,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:WT+E.coli3|ID:12|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF WT E3,GF WT E3,WT+E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_WT_E3_Clean_Data1.fq.gz GF_WT_E3_Clean_Data2.fq.gz,fastq fastq,6793678785.0,24320155.0,GF WT E3 Clean Data1.fq.gz,0:139.67 1:139.67,A:1830160129;C:1563893212;G:1574235384;T:1825389791;N:269,139,139,,,1830160129,1563893212,1574235384,1825389791,269,SRX13769740,SRS11649743,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.95157,0.95265,0.10564,0.10461,0.67233,0.67205,0.48987,0.48557,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68118,SRR17600935,SRX13769739,SRS11649742,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,WT+E.coli2,WT+E.coli2,GF WT E2,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:WT+E.coli2|ID:11|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF WT E2,GF WT E2,WT+E.coli,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF_WT_E2_Clean_Data1.fq.gz GF_WT_E2_Clean_Data2.fq.gz,fastq fastq,6659933953.0,23885221.0,GF WT E2 Clean Data1.fq.gz,0:139.42 1:139.41,A:1814190188;C:1513460121;G:1524770881;T:1807512517;N:246,139,139,,,1814190188,1513460121,1524770881,1807512517,246,SRX13769739,SRS11649742,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.94902,0.95042,0.10269,0.10195,0.67377,0.67332,0.48466,0.48375,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68119,SRR17600936,SRX13769738,SRS11649741,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,CON2,CON2,GF2,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:germ free|ID:2|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF2,GF2,con,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF2_Clean_Data2.fq.gz GF2_Clean_Data1.fq.gz,fastq fastq,6890754909.0,24743699.0,GF2 Clean Data1.fq.gz,0:139.24 1:139.24,A:1835444319;C:1603941435;G:1619476893;T:1831892000;N:262,139,139,,,1835444319,1603941435,1619476893,1831892000,262,SRX13769738,SRS11649741,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.95084,0.95124,0.09039,0.08916,0.66746,0.66663,0.48741,0.48096,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 68120,SRR17600937,SRX13769737,SRS11649740,SRP354867,PRJNA796827,Transcriptome sequencing of LGG fed zebrafish,PRJNA796827,Other,We aimed to reveal the relationship between biofilm and intestinal immunity.,,,CON1,CON1,GF1,,strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:germ free|ID:1|BioSampleModel:Model organism or animal,,,,,,,,,Danio rerio,GF1,GF1,con,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP354867,,,GF1_Clean_Data2.fq.gz GF1_Clean_Data1.fq.gz,fastq fastq,7112715446.0,25432945.0,GF1 Clean Data1.fq.gz,0:139.84 1:139.83,A:1910488450;C:1639359800;G:1654695811;T:1908171095;N:290,139,139,,,1910488450,1639359800,1654695811,1908171095,290,SRX13769737,SRS11649740,SRA1356218,zhejiang university|School of Animal Sciences,zhejiang university,2,0.95046,0.9513,0.0921,0.09027,0.66929,0.66912,0.47172,0.47162,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2022-01-13,Undetermined,Undetermined,Whole Organism,All anatomical structures 74405,SRR23816189,SRX19638186,SRS17007061,SRP426733,PRJNA940583,A study of the transcriptome of zebrafish brain tissue,PRJNA940583,Other,Neurobiology of the zebrafish,,,,,C3,,collection date:2022 01|geo loc name:China:Beijing|lat lon:39.56 N 116.20 E|age:missing|breed:missing|cultivar:missing|dev stage:missing|ecotype:missing|isolate:missing|sex:missing|strain:missing|tissue:missing|BioSampleModel:Model organism or animal,,,,,,,,,brain of the zebrafish,C3,C3,Materials and methods,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP426733,,,C3.raw_1.fastq.gz C3.raw_2.fastq.gz,fastq fastq,11050626900.0,36835423.0,C3.raw 1.fastq.gz,0:150 1:150,A:2865145780;C:2642886672;G:2675064008;T:2866540089;N:990351,150,150,,,2865145780,2642886672,2675064008,2866540089,990351,SRX19638186,SRS17007061,SRA1601531,Chinese Academy of Agricultural Sciences|Institute of Quality Standard and Testing Technolo,Chinese Academy of Agricultural Sciences,2,0.9531,0.95272,0.06997,0.07085,0.6634,0.66393,0.48771,0.49045,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-11,Undetermined,Undetermined,Brain,Nervous System 74406,SRR23816190,SRX19638185,SRS17007060,SRP426733,PRJNA940583,A study of the transcriptome of zebrafish brain tissue,PRJNA940583,Other,Neurobiology of the zebrafish,,,,,C2,,collection date:2022 01|geo loc name:China:Beijing|lat lon:39.56 N 116.20 E|age:missing|breed:missing|cultivar:missing|dev stage:missing|ecotype:missing|isolate:missing|sex:missing|strain:missing|tissue:missing|BioSampleModel:Model organism or animal,,,,,,,,,brain of the zebrafish,C2,C2,Materials and methods,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP426733,,,C2.raw_1.fastq.gz C2.raw_2.fastq.gz,fastq fastq,9161220600.0,30537402.0,C2.raw 1.fastq.gz,0:150 1:150,A:2362480503;C:2178221545;G:2247509752;T:2372225007;N:783793,150,150,,,2362480503,2178221545,2247509752,2372225007,783793,SRX19638185,SRS17007060,SRA1601531,Chinese Academy of Agricultural Sciences|Institute of Quality Standard and Testing Technolo,Chinese Academy of Agricultural Sciences,2,0.95704,0.95351,0.06583,0.06694,0.66951,0.67034,0.50451,0.50466,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-11,Undetermined,Undetermined,Brain,Nervous System 74407,SRR23816191,SRX19638184,SRS17007059,SRP426733,PRJNA940583,A study of the transcriptome of zebrafish brain tissue,PRJNA940583,Other,Neurobiology of the zebrafish,,,,,C1,,collection date:2022 01|geo loc name:China:Beijing|lat lon:39.56 N 116.20 E|age:missing|breed:missing|cultivar:missing|dev stage:missing|ecotype:missing|isolate:missing|sex:missing|strain:missing|tissue:missing|BioSampleModel:Model organism or animal,,,,,,,,,brain of the zebrafish,C1,C1,Materials and methods,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP426733,,,C1.raw_1.fastq.gz C1.raw_2.fastq.gz,fastq fastq,6557456400.0,21858188.0,C1.raw 1.fastq.gz,0:150 1:150,A:1700751272;C:1563561339;G:1593294702;T:1699335261;N:513826,150,150,,,1700751272,1563561339,1593294702,1699335261,513826,SRX19638184,SRS17007059,SRA1601531,Chinese Academy of Agricultural Sciences|Institute of Quality Standard and Testing Technolo,Chinese Academy of Agricultural Sciences,2,0.9468,0.95291,0.0719,0.07405,0.6706,0.66914,0.46316,0.47396,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-11,Undetermined,Undetermined,Brain,Nervous System 74408,SRR23816192,SRX19638183,SRS17007058,SRP426733,PRJNA940583,A study of the transcriptome of zebrafish brain tissue,PRJNA940583,Other,Neurobiology of the zebrafish,,,,,C H3,,collection date:2022 01|geo loc name:China:Beijing|lat lon:39.56 N 116.20 E|age:missing|breed:missing|cultivar:missing|dev stage:missing|ecotype:missing|isolate:missing|sex:missing|strain:missing|tissue:missing|BioSampleModel:Model organism or animal,,,,,,,,,brain of the zebrafish,C H3,C H3,Materials and methods,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP426733,,,C_H3.raw_1.fastq.gz C_H3.raw_2.fastq.gz,fastq fastq,9295081800.0,30983606.0,C H3.raw 1.fastq.gz,0:150 1:150,A:2420308728;C:2209690139;G:2245386913;T:2418963797;N:732223,150,150,,,2420308728,2209690139,2245386913,2418963797,732223,SRX19638183,SRS17007058,SRA1601531,Chinese Academy of Agricultural Sciences|Institute of Quality Standard and Testing Technolo,Chinese Academy of Agricultural Sciences,2,0.94656,0.9521,0.07155,0.07386,0.66383,0.66391,0.48502,0.48282,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-11,Undetermined,Undetermined,Brain,Nervous System 74409,SRR23816193,SRX19638182,SRS17007057,SRP426733,PRJNA940583,A study of the transcriptome of zebrafish brain tissue,PRJNA940583,Other,Neurobiology of the zebrafish,,,,,C H2,,collection date:2022 01|geo loc name:China:Beijing|lat lon:39.56 N 116.20 E|age:missing|breed:missing|cultivar:missing|dev stage:missing|ecotype:missing|isolate:missing|sex:missing|strain:missing|tissue:missing|BioSampleModel:Model organism or animal,,,,,,,,,brain of the zebrafish,C H2,C H2,Materials and methods,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP426733,,,C_H2.raw_1.fastq.gz C_H2.raw_2.fastq.gz,fastq fastq,10811531700.0,36038439.0,C H2.raw 1.fastq.gz,0:150 1:150,A:2802038157;C:2586697803;G:2620325966;T:2801538702;N:931072,150,150,,,2802038157,2586697803,2620325966,2801538702,931072,SRX19638182,SRS17007057,SRA1601531,Chinese Academy of Agricultural Sciences|Institute of Quality Standard and Testing Technolo,Chinese Academy of Agricultural Sciences,2,0.95404,0.95031,0.06755,0.06783,0.66703,0.66766,0.48371,0.48209,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-11,Undetermined,Undetermined,Brain,Nervous System 74410,SRR23816194,SRX19638181,SRS17007056,SRP426733,PRJNA940583,A study of the transcriptome of zebrafish brain tissue,PRJNA940583,Other,Neurobiology of the zebrafish,,,,,C H1,,collection date:2022 01|geo loc name:China:Beijing|lat lon:39.56 N 116.20 E|age:missing|breed:missing|cultivar:missing|dev stage:missing|ecotype:missing|isolate:missing|sex:missing|strain:missing|tissue:missing|BioSampleModel:Model organism or animal,,,,,,,,,brain of the zebrafish,C H1,C H1,Materials and methods,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP426733,,,C_H1.raw_1.fastq.gz C_H1.raw_2.fastq.gz,fastq fastq,7084951800.0,23616506.0,C H1.raw 1.fastq.gz,0:150 1:150,A:1848926248;C:1674901289;G:1707752429;T:1852765799;N:606035,150,150,,,1848926248,1674901289,1707752429,1852765799,606035,SRX19638181,SRS17007056,SRA1601531,Chinese Academy of Agricultural Sciences|Institute of Quality Standard and Testing Technolo,Chinese Academy of Agricultural Sciences,2,0.95273,0.94995,0.07309,0.07329,0.66576,0.66616,0.48159,0.47398,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2023-03-11,Undetermined,Undetermined,Brain,Nervous System