rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
56121,SRR10887589,SRX7556570,SRS5993955,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGTTAT: hair cells wt 4C12,GSM4271769,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGTTAT: hair cells wt 4C12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271769,GSM4271769: TGTTAT: hair cells wt 4C12; Danio rerio; RNA Seq,GSM4271769,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271769,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGTTAT_r1.fq.gz GEO_TGTTAT_r2.fq.gz,fastq fastq,27958458.0,423613.0,GSM4271769 r1,0:16 1:50,A:7253350;C:5460413;G:6559816;T:8677521;N:7358,16,50,,,7253350,5460413,6559816,8677521,7358,SRX7556570,SRS5993955,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83012,0.0,0.08904,1.0,0.98675,,0.37785,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56122,SRR10887588,SRX7556569,SRS5993963,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGATAA: hair cells wt 4C11,GSM4271768,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGATAA: hair cells wt 4C11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271768,GSM4271768: TGATAA: hair cells wt 4C11; Danio rerio; RNA Seq,GSM4271768,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271768,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGATAA_r1.fq.gz GEO_TGATAA_r2.fq.gz,fastq fastq,16311570.0,247145.0,GSM4271768 r1,0:16 1:50,A:4698682;C:3073287;G:3789253;T:4746028;N:4320,16,50,,,4698682,3073287,3789253,4746028,4320,SRX7556569,SRS5993963,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83888,0.0,0.09183,1.0,0.98715,,0.45564,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56123,SRR10887587,SRX7556568,SRS5993959,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCTATA: hair cells wt 4C10,GSM4271767,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCTATA: hair cells wt 4C10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271767,GSM4271767: TCTATA: hair cells wt 4C10; Danio rerio; RNA Seq,GSM4271767,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271767,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCTATA_r1.fq.gz GEO_TCTATA_r2.fq.gz,fastq fastq,21750102.0,329547.0,GSM4271767 r1,0:16 1:50,A:6098788;C:4298102;G:4613696;T:6733786;N:5730,16,50,,,6098788,4298102,4613696,6733786,5730,SRX7556568,SRS5993959,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88556,0.0,0.09247,1.0,0.98632,,0.51526,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56124,SRR10887586,SRX7556567,SRS5993954,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCAATT: hair cells wt 4C9,GSM4271766,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCAATT: hair cells wt 4C9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271766,GSM4271766: TCAATT: hair cells wt 4C9; Danio rerio; RNA Seq,GSM4271766,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271766,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCAATT_r1.fq.gz GEO_TCAATT_r2.fq.gz,fastq fastq,23862894.0,361559.0,GSM4271766 r1,0:16 1:50,A:6588667;C:4897780;G:5179183;T:7191284;N:5980,16,50,,,6588667,4897780,5179183,7191284,5980,SRX7556567,SRS5993954,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86481,0.0,0.11034,1.0,0.98326,,0.40522,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56125,SRR10887585,SRX7556566,SRS5993956,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATTCA: hair cells wt 4C8,GSM4271765,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATTCA: hair cells wt 4C8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271765,GSM4271765: TATTCA: hair cells wt 4C8; Danio rerio; RNA Seq,GSM4271765,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271765,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATTCA_r1.fq.gz GEO_TATTCA_r2.fq.gz,fastq fastq,17886990.0,271015.0,GSM4271765 r1,0:16 1:50,A:4891618;C:3686776;G:3988141;T:5315845;N:4610,16,50,,,4891618,3686776,3988141,5315845,4610,SRX7556566,SRS5993956,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.81672,0.0,0.1005,1.0,0.98561,,0.42678,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56126,SRR10887584,SRX7556565,SRS5993952,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATCTA: hair cells wt 4C7,GSM4271764,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATCTA: hair cells wt 4C7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271764,GSM4271764: TATCTA: hair cells wt 4C7; Danio rerio; RNA Seq,GSM4271764,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271764,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATCTA_r1.fq.gz GEO_TATCTA_r2.fq.gz,fastq fastq,67991880.0,1030180.0,GSM4271764 r1,0:16 1:50,A:18256048;C:14118538;G:16365381;T:19234623;N:17290,16,50,,,18256048,14118538,16365381,19234623,17290,SRX7556565,SRS5993952,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.74612,0.0,0.10089,1.0,0.97877,,0.49534,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56167,SRR10887543,SRX7556524,SRS5993910,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGTAAA: hair cells wt 2C12,GSM4271723,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGTAAA: hair cells wt 2C12,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271723,GSM4271723: TGTAAA: hair cells wt 2C12; Danio rerio; RNA Seq,GSM4271723,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271723,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGTAAA_r1.fq.gz GEO_TGTAAA_r2.fq.gz,fastq fastq,36393456.0,551416.0,GSM4271723 r1,0:16 1:50,A:10494740;C:6916737;G:8340339;T:10629953;N:11687,16,50,,,10494740,6916737,8340339,10629953,11687,SRX7556524,SRS5993910,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.88673,0.0,0.07491,1.0,0.9867,,0.42572,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56168,SRR10887542,SRX7556523,SRS5993909,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TGAAAT: hair cells wt 2C11,GSM4271722,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TGAAAT: hair cells wt 2C11,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271722,GSM4271722: TGAAAT: hair cells wt 2C11; Danio rerio; RNA Seq,GSM4271722,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271722,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TGAAAT_r1.fq.gz GEO_TGAAAT_r2.fq.gz,fastq fastq,59922720.0,907920.0,GSM4271722 r1,0:16 1:50,A:17660178;C:11271616;G:13597589;T:17378574;N:14763,16,50,,,17660178,11271616,13597589,17378574,14763,SRX7556523,SRS5993909,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.86668,0.0,0.13202,1.0,0.98466,,0.47258,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56169,SRR10887541,SRX7556522,SRS5993914,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TCATTA: hair cells wt 2C10,GSM4271721,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TCATTA: hair cells wt 2C10,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271721,GSM4271721: TCATTA: hair cells wt 2C10; Danio rerio; RNA Seq,GSM4271721,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271721,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TCATTA_r1.fq.gz GEO_TCATTA_r2.fq.gz,fastq fastq,46021734.0,697299.0,GSM4271721 r1,0:16 1:50,A:12725573;C:9548168;G:10202938;T:13533019;N:12036,16,50,,,12725573,9548168,10202938,13533019,12036,SRX7556522,SRS5993914,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.79991,0.0,0.12416,1.0,0.98285,,0.51119,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56170,SRR10887540,SRX7556521,SRS5993907,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATTTG: hair cells wt 2C9,GSM4271720,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATTTG: hair cells wt 2C9,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271720,GSM4271720: TATTTG: hair cells wt 2C9; Danio rerio; RNA Seq,GSM4271720,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271720,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATTTG_r1.fq.gz GEO_TATTTG_r2.fq.gz,fastq fastq,57077328.0,864808.0,GSM4271720 r1,0:16 1:50,A:15095956;C:10660095;G:12874801;T:18430756;N:15720,16,50,,,15095956,10660095,12874801,18430756,15720,SRX7556521,SRS5993907,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.83235,0.0,0.08647,1.0,0.98411,,0.4321,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56171,SRR10887539,SRX7556520,SRS5993906,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATGTT: hair cells wt 2C8,GSM4271719,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATGTT: hair cells wt 2C8,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271719,GSM4271719: TATGTT: hair cells wt 2C8; Danio rerio; RNA Seq,GSM4271719,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271719,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATGTT_r1.fq.gz GEO_TATGTT_r2.fq.gz,fastq fastq,82334538.0,1247493.0,GSM4271719 r1,0:16 1:50,A:21259201;C:15330189;G:20495066;T:25226866;N:23216,16,50,,,21259201,15330189,20495066,25226866,23216,SRX7556520,SRS5993906,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.82387,0.0,0.08807,1.0,0.97707,,0.53859,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System
56172,SRR10887538,SRX7556519,SRS5993904,SRP241937,PRJNA601204,Epithelial planar bipolarity emerges from Notch   mediated asymmetric inhibition of Emx2,GSE143663,Transcriptome Analysis,This dataset consists of single cell RNA seq mcSCRBseq data of neuromast hair cells from wild type and Emx2 mutant zebrafish larvae. Posterior lateral line neuromast hair cells were isolated by fluorescence activated cell sorting FACS from the dissociated trunks of wild type and Emx2 mutant Tg[myo6b:actb1 EGFP] transgenic zebrafish larvae expressing the green fluorescent protein EGFP in hair cells and unipotent hair cell progenitors UHCPs. Overall design: mcSCRB seq experiment of hair cells from wild type and Emx2 mutant larvae.,,pubmed:32109392,,TATATC: hair cells wt 2C7,GSM4271718,,source name:zebrafish neuromast hair cells|genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,TATATC: hair cells wt 2C7,Fastq reads were processed with the zUMIs pipeline version 0.2.0 Parekh et al.  2018 cDNA reads were aligned to the Zebrafish Genome GRCZ11 with STAR 2.6.0a Quantification was done with ENSEMBL gene model GRCz11.94 Genome build: Zebrafish: GRCz11  Ensembl 94 Supplementary files format and content: cell columns and gene rows  wise UMI expression table,zebrafish neuromast hair cells,none,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,Standardized conditions at 28.5°C in the 0 3 x Danieau’s solution.,genotype:Tg[myo6b:actb1 EGFP] wild type|tissue:zebrafish neuromast hair cells|developmental day:6 dpf,GSM4271718,GSM4271718: TATATC: hair cells wt 2C7; Danio rerio; RNA Seq,GSM4271718,,1,Enzymatic dissociation of larval trunks and isolation of green fluorescent protein expressing cells by FAC sorting. mcSCRB seq Bagnoli et al.  2018,GEO Accession:GSM4271718,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 1500,,SRP241937,,,GEO_TATATC_r1.fq.gz GEO_TATATC_r2.fq.gz,fastq fastq,47552802.0,720497.0,GSM4271718 r1,0:16 1:50,A:13161599;C:9865238;G:10361619;T:14152235;N:12111,16,50,,,13161599,9865238,10361619,14152235,12111,SRX7556519,SRS5993904,SRA1026350,GEO,"Research Unit Sensory Biology and Organogenesis, Helmholtz Zentrum München",2,0.0,0.80675,0.0,0.09336,1.0,0.98466,,0.43652,16,50,T,B,sc-like readlen,illumina,hiseq_era,unknown,cdna_unspecified,unknown,sc_generic,single_cell_generic,generic-scrnaseq-only,,Germany,2020-01-14,Multi-stage,Multi-stage,Lateral Line,Sensory System