rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
5795,ERR1698352,ERX1767860,ERS1417534,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 012 up 058 12,SAMEA4518355,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518355|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 012 up 058 12|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 012 up 058 12|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 012 up 058 12 s,IonXpressRNA 012 up 058 12 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_012_up_058_12.fastq.gz,fastq,2535299006.0,33956077.0,E MTAB 5173:IonXpressRNA 012 up 058 12,0:74.66,A:719061985;C:581906269;G:579932234;T:654398518;N:0,74,,,,719061985,581906269,579932234,654398518,0,ERX1767860,ERS1417534,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.7343,,0.34119,,0.7359,,0.48406,,66,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5796,ERR1698351,ERX1767859,ERS1417533,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 011 up 058 11,SAMEA4518354,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518354|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 011 up 058 11|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 011 up 058 11|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 011 up 058 11 s,IonXpressRNA 011 up 058 11 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_011_up_058_11.fastq.gz,fastq,3400774471.0,38709756.0,E MTAB 5173:IonXpressRNA 011 up 058 11,0:87.85,A:948991439;C:793389977;G:792539547;T:865853508;N:0,87,,,,948991439,793389977,792539547,865853508,0,ERX1767859,ERS1417533,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.63968,,0.27033,,0.75213,,0.47966,,139,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5797,ERR1698350,ERX1767858,ERS1417532,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 010 up 058 10,SAMEA4518353,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518353|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 010 up 058 10|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 010 up 058 10|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 010 up 058 10 s,IonXpressRNA 010 up 058 10 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_010_up_058_10.fastq.gz,fastq,3502667998.0,39204781.0,E MTAB 5173:IonXpressRNA 010 up 058 10,0:89.34,A:976977303;C:803330255;G:808731995;T:913628445;N:0,89,,,,976977303,803330255,808731995,913628445,0,ERX1767858,ERS1417532,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.65846,,0.2815,,0.74028,,0.47784,,86,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5798,ERR1698349,ERX1767857,ERS1417531,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 009 up 058 9,SAMEA4518352,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518352|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 009 up 058 9|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 009 up 058 9|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 009 up 058 9 s,IonXpressRNA 009 up 058 9 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_009_up_058_9.fastq.gz,fastq,3575088264.0,39745481.0,E MTAB 5173:IonXpressRNA 009 up 058 9,0:89.95,A:1011474126;C:809896078;G:807471974;T:946246086;N:0,89,,,,1011474126,809896078,807471974,946246086,0,ERX1767857,ERS1417531,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.65266,,0.30274,,0.75286,,0.48527,,94,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5799,ERR1698348,ERX1767856,ERS1417530,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 008 up 058 8,SAMEA4518351,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518351|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 008 up 058 8|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 008 up 058 8|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 008 up 058 8 s,IonXpressRNA 008 up 058 8 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_008_up_058_8.fastq.gz,fastq,3259710114.0,38530802.0,E MTAB 5173:IonXpressRNA 008 up 058 8,0:84.60,A:916053004;C:755694888;G:751125332;T:836836890;N:0,84,,,,916053004,755694888,751125332,836836890,0,ERX1767856,ERS1417530,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.70995,,0.31365,,0.74781,,0.48846,,61,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5800,ERR1698347,ERX1767855,ERS1417529,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 007 up 058 7,SAMEA4518350,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518350|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 007 up 058 7|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 007 up 058 7|sex:male,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 007 up 058 7 s,IonXpressRNA 007 up 058 7 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: male:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_007_up_058_7.fastq.gz,fastq,2307842164.0,28984666.0,E MTAB 5173:IonXpressRNA 007 up 058 7,0:79.62,A:634041732;C:548565089;G:545418985;T:579816358;N:0,79,,,,634041732,548565089,545418985,579816358,0,ERX1767855,ERS1417529,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.67542,,0.2817,,0.74168,,0.47224,,37,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5801,ERR1698346,ERX1767854,ERS1417528,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 006 up 058 6,SAMEA4518349,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518349|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 006 up 058 6|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 006 up 058 6|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 006 up 058 6 s,IonXpressRNA 006 up 058 6 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_006_up_058_6.fastq.gz,fastq,2239484857.0,27021234.0,E MTAB 5173:IonXpressRNA 006 up 058 6,0:82.88,A:637326624;C:506830056;G:503508207;T:591819970;N:0,82,,,,637326624,506830056,503508207,591819970,0,ERX1767854,ERS1417528,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.66441,,0.31904,,0.74905,,0.47154,,122,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5802,ERR1698345,ERX1767853,ERS1417527,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 005 up 058 5,SAMEA4518348,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518348|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 005 up 058 5|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 005 up 058 5|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 005 up 058 5 s,IonXpressRNA 005 up 058 5 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_005_up_058_5.fastq.gz,fastq,2920608487.0,39573075.0,E MTAB 5173:IonXpressRNA 005 up 058 5,0:73.80,A:814851327;C:678116994;G:691911192;T:735728974;N:0,73,,,,814851327,678116994,691911192,735728974,0,ERX1767853,ERS1417527,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.60005,,0.25542,,0.76481,,0.4886,,12,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5803,ERR1698344,ERX1767852,ERS1417526,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 004 up 058 4,SAMEA4518347,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518347|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 004 up 058 4|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 004 up 058 4|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 004 up 058 4 s,IonXpressRNA 004 up 058 4 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_004_up_058_4.fastq.gz,fastq,2989727396.0,37953454.0,E MTAB 5173:IonXpressRNA 004 up 058 4,0:78.77,A:802963810;C:722434772;G:742850530;T:721478284;N:0,78,,,,802963810,722434772,742850530,721478284,0,ERX1767852,ERS1417526,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.76402,,0.32503,,0.74241,,0.4815,,128,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5804,ERR1698343,ERX1767851,ERS1417525,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 003 up 058 3,SAMEA4518346,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518346|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 003 up 058 3|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 003 up 058 3|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 003 up 058 3 s,IonXpressRNA 003 up 058 3 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_003_up_058_3.fastq.gz,fastq,4068383115.0,41996847.0,E MTAB 5173:IonXpressRNA 003 up 058 3,0:96.87,A:1133167706;C:944306379;G:948626944;T:1042282086;N:0,96,,,,1133167706,944306379,948626944,1042282086,0,ERX1767851,ERS1417525,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.54804,,0.22334,,0.76353,,0.49163,,93,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5805,ERR1698342,ERX1767850,ERS1417524,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 002 up 058 2,SAMEA4518345,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518345|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 002 up 058 2|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 002 up 058 2|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 002 up 058 2 s,IonXpressRNA 002 up 058 2 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_002_up_058_2.fastq.gz,fastq,2679963893.0,33552723.0,E MTAB 5173:IonXpressRNA 002 up 058 2,0:79.87,A:709092431;C:635329399;G:670478210;T:665063853;N:0,79,,,,709092431,635329399,670478210,665063853,0,ERX1767850,ERS1417524,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.43283,,0.18649,,0.81178,,0.52885,,116,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
5806,ERR1698341,ERX1767849,ERS1417523,ERP018188,PRJEB16335,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol,E-MTAB-5173,Transcriptome Analysis,17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives.  It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment.  Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period.  In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0  2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled.,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173,,Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,IonXpressRNA 001 up 058 1,SAMEA4518344,"School of Natural Science, Technology and Environmental Studies Sodertorn University",ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518344|INSDC center alias:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science  Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 001 up 058 1|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 001 up 058 1|sex:female,,,,,,,,,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,E MTAB 5173:IonXpressRNA 001 up 058 1 s,IonXpressRNA 001 up 058 1 s,RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich  Germany EE2 exposure. Fish exposed to 0  2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA,Experimental Factor: female:sex|Experimental Factor: n1:compound,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP018188,Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol,ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16,IonXpressRNA_001_up_058_1.fastq.gz,fastq,3358902499.0,39857024.0,E MTAB 5173:IonXpressRNA 001 up 058 1,0:84.27,A:933405205;C:784111716;G:780404241;T:860981337;N:0,84,,,,933405205,784111716,780404241,860981337,0,ERX1767849,ERS1417523,ERA739176,"School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive","School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive",1,0.71789,,0.33159,,0.76619,,0.514,,56,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,random_priming,ribozero,bulk,unknown,unknown,,Sweden,2016-10-19,Pharyngula,Embryo,Brain,Nervous System
15550,ERR647595,ERX604031,ERS557915,ERP007147,PRJEB7420,Two Sets of Synthetic Spike in Controls for Size Selection and Data Normalisation in small RNA seq,ena-STUDY-UNIVERSITY OF AMSTERDAM-01-10-2014-14:02:22:856-622,Other,There is an increasing interest in complementing standard RNA seq experiments with small RNA expression data to obtain a comprehensive view of the transcriptome. Two aspects need to be considered when small RNA seq sRNA seq is used. First  sRNA seq protocols are size selective and typically optimized for sequencing miRNAs. Second  given the dynamic composition of the small RNA fraction a reliable normalization strategy is needed to identify differentially expressed sRNAs. To address both issues we here present two sets of synthetic RNA spike in controls for monitoring size selectivity and for performing normalization. Size spike ins comprising 18 oligoribonucleotides 10–300 nucleotides were designed and tested using controlled modifications to the size selectivity of sRNA seq. As an applied example  the loss of RNA molecules <30 nucleotides during small RNA isolation from zebrafish oocytes is demonstrated. Normalization spike ins comprising 19 oligoribonucleotides were designed to use as an external reference for DESeq normalization. Spike in based normalization improved the quantification of predetermined fold changes. Lastly  sRNA seq on female and male zebrafish demonstrated that the higher miRNA content in males was correctly preserved post spike in based normalization.,,,,Egg,SAMEA2796300,UNIVERSITY OF AMSTERDAM,Alias:Egg|ENA checklist:ERC000011|INSDC center alias:UNIVERSITY OF AMSTERDAM|INSDC center name:UNIVERSITY OF AMSTERDAM|INSDC first public:2014 11 29T17:02:28Z|INSDC last update:2014 10 01T14:29:23Z|INSDC status:public|SRA accession:ERS557915|Sample Name:ERS557915|Title:Zebrafish Egg samples|dev stage:Oocytes,,,,,,,,,Ion Torrent Proton sequencing,ena EXPERIMENT UNIVERSITY OF AMSTERDAM 01 10 2014 14:25:29:391 1,RID0024,1,,,miRNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent Proton,,ERP007147,Ion Torrent Proton sequencing,ENA FIRST PUBLIC:2014 11 29|ENA LAST UPDATE:2018 11 16,RID0024_016.fastq.gz,fastq,6684767188.0,89052017.0,ena RUN UNIVERSITY OF AMSTERDAM 01 10 2014 14:25:29:391 1,0:75.07,A:1523328157;C:1795624453;G:1849675240;T:1516139338;N:0,75,,,,1523328157,1795624453,1849675240,1516139338,0,ERX604031,ERS557915,ERA363845,UNIVERSITY OF AMSTERDAM,UNIVERSITY OF AMSTERDAM,1,0.89536,,0.15322,,0.91421,,0.69019,,73,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,small_rna,unknown,bulk,unknown,unknown,,Netherlands,2014-10-01,Zygote,Embryo,Oocyte,Reproductive System
31610,SRR28480662,SRX24083226,SRS20872880,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 10bp,,zebrafish C11 65.25% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 10bp,sccp22,sccp22,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_010.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115996940.0,1032044.0,IonXpress 010.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.40,A:27435635;C:30752569;G:30166368;T:27642368;N:0,112,,,,27435635,30752569,30166368,27642368,0,SRX24083226,SRS20872880,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31611,SRR28480663,SRX24083225,SRS20872879,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 100bp,,zebrafish C11 65.25% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 100bp,sccp21,sccp21,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_009.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,93043813.0,828468.0,IonXpress 009.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.31,A:21877681;C:24819986;G:24178228;T:22167918;N:0,112,,,,21877681,24819986,24178228,22167918,0,SRX24083225,SRS20872879,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31612,SRR28480664,SRX24083224,SRS20872878,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 1,,zebrafish control 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 1,CK1,CK1,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_008.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,103344731.0,919663.0,IonXpress 008.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.37,A:24335657;C:27548197;G:27080320;T:24380557;N:0,112,,,,24335657,27548197,27080320,24380557,0,SRX24083224,SRS20872878,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31613,SRR28480665,SRX24083223,SRS20872877,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 8,,zebrafish control 8,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 8,CK8,CK8,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_064.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,1248739.0,12382.0,IonXpress 064.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:100.85,A:343287;C:282561;G:276446;T:346445;N:0,100,,,,343287,282561,276446,346445,0,SRX24083223,SRS20872877,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31614,SRR28480666,SRX24083222,SRS20872875,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.0001bp,,zebrafish C11H18Cl6 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.0001bp,sccp87,sccp87,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_063.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,85118924.0,764363.0,IonXpress 063.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.36,A:20271638;C:22447929;G:22188225;T:20211132;N:0,111,,,,20271638,22447929,22188225,20211132,0,SRX24083222,SRS20872875,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31615,SRR28480667,SRX24083221,SRS20872876,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.001bp,,zebrafish C11H18Cl6 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.001bp,sccp86,sccp86,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_062.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100020739.0,887080.0,IonXpress 062.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.75,A:23887649;C:26321654;G:25886408;T:23925028;N:0,112,,,,23887649,26321654,25886408,23925028,0,SRX24083221,SRS20872876,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31616,SRR28480668,SRX24083220,SRS20872873,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.01bp,,zebrafish C11H18Cl6 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.01bp,sccp85,sccp85,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_061.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97468627.0,871705.0,IonXpress 061.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.81,A:23208366;C:25629536;G:25319083;T:23311642;N:0,111,,,,23208366,25629536,25319083,23311642,0,SRX24083220,SRS20872873,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31617,SRR28480669,SRX24083219,SRS20872874,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.0001bp,,zebrafish C10 65.02% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.0001bp,sccp17,sccp17,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_007.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,98520761.0,872099.0,IonXpress 007.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.97,A:23295910;C:26225214;G:25736839;T:23262798;N:0,112,,,,23295910,26225214,25736839,23262798,0,SRX24083219,SRS20872874,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31618,SRR28480670,SRX24083218,SRS20872872,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 0.1bp,,zebrafish C11H18Cl6 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 0.1bp,sccp84,sccp84,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_060.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101362655.0,911931.0,IonXpress 060.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.15,A:24332766;C:26520366;G:26180006;T:24329517;N:0,111,,,,24332766,26520366,26180006,24329517,0,SRX24083218,SRS20872872,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31619,SRR28480671,SRX24083217,SRS20872871,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 1bp,,zebrafish C11H18Cl6 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 1bp,sccp83,sccp83,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_059.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100303496.0,903897.0,IonXpress 059.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.97,A:24088149;C:26263021;G:26004101;T:23948225;N:0,110,,,,24088149,26263021,26004101,23948225,0,SRX24083217,SRS20872871,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31620,SRR28480672,SRX24083216,SRS20872870,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 10bp,,zebrafish C11H18Cl6 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 10bp,sccp82,sccp82,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_058.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115137934.0,1041398.0,IonXpress 058.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.56,A:27558871;C:30238935;G:29677704;T:27662424;N:0,110,,,,27558871,30238935,29677704,27662424,0,SRX24083216,SRS20872870,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31621,SRR28480673,SRX24083215,SRS20872868,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11H18Cl6 100bp,,zebrafish C11H18Cl6 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11H18Cl6 100bp,sccp81,sccp81,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_057.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97024081.0,870349.0,IonXpress 057.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.48,A:23039592;C:25636462;G:25229252;T:23118775;N:0,111,,,,23039592,25636462,25229252,23118775,0,SRX24083215,SRS20872868,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31622,SRR28480674,SRX24083214,SRS20872869,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 7,,zebrafish control 7,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 7,CK7,CK7,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_056.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102043702.0,904558.0,IonXpress 056.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.81,A:24197994;C:26938896;G:26614626;T:24292186;N:0,112,,,,24197994,26938896,26614626,24292186,0,SRX24083214,SRS20872869,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31623,SRR28480675,SRX24083213,SRS20872867,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.0001bp,,zebrafish C13H20Cl8 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.0001bp,sccp77,sccp77,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_055.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,87029779.0,773209.0,IonXpress 055.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.56,A:20625019;C:22910646;G:22761997;T:20732117;N:0,112,,,,20625019,22910646,22761997,20732117,0,SRX24083213,SRS20872867,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31624,SRR28480676,SRX24083212,SRS20872866,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.001bp,,zebrafish C13H20Cl8 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.001bp,sccp76,sccp76,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_054.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110378504.0,977343.0,IonXpress 054.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.94,A:26221466;C:29150847;G:28715262;T:26290929;N:0,112,,,,26221466,29150847,28715262,26290929,0,SRX24083212,SRS20872866,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31625,SRR28480677,SRX24083211,SRS20872865,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.01bp,,zebrafish C13H20Cl8 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.01bp,sccp75,sccp75,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_053.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,96397023.0,855195.0,IonXpress 053.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.72,A:22971501;C:25417770;G:25009533;T:22998219;N:0,112,,,,22971501,25417770,25009533,22998219,0,SRX24083211,SRS20872865,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31626,SRR28480678,SRX24083210,SRS20872864,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 0.1bp,,zebrafish C13H20Cl8 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 0.1bp,sccp74,sccp74,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_052.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,95954965.0,851203.0,IonXpress 052.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.73,A:22986581;C:25153781;G:24711283;T:23103320;N:0,112,,,,22986581,25153781,24711283,23103320,0,SRX24083210,SRS20872864,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31627,SRR28480679,SRX24083209,SRS20872861,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 1bp,,zebrafish C13H20Cl8 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 1bp,sccp73,sccp73,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_051.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102573446.0,908806.0,IonXpress 051.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.87,A:24644043;C:26951588;G:26384474;T:24593341;N:0,112,,,,24644043,26951588,26384474,24593341,0,SRX24083209,SRS20872861,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31628,SRR28480680,SRX24083208,SRS20872862,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.001bp,,zebrafish C10 65.02% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.001bp,sccp16,sccp16,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_006.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108392278.0,960577.0,IonXpress 006.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.84,A:25539867;C:28930494;G:28352601;T:25569316;N:0,112,,,,25539867,28930494,28352601,25569316,0,SRX24083208,SRS20872862,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31629,SRR28480681,SRX24083207,SRS20872863,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 10bp,,zebrafish C13H20Cl8 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 10bp,sccp72,sccp72,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_050.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,3966818.0,36367.0,IonXpress 050.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:109.08,A:964317;C:1025339;G:1008928;T:968234;N:0,109,,,,964317,1025339,1008928,968234,0,SRX24083207,SRS20872863,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31630,SRR28480682,SRX24083206,SRS20872860,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13H20Cl8 100bp,,zebrafish C13H20Cl8 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13H20Cl8 100bp,sccp71,sccp71,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_049.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109404410.0,969450.0,IonXpress 049.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.85,A:25934260;C:28861104;G:28479919;T:26129127;N:0,112,,,,25934260,28861104,28479919,26129127,0,SRX24083206,SRS20872860,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31631,SRR28480683,SRX24083205,SRS20872859,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 6,,zebrafish control 6,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 6,CK6,CK6,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_048.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110491023.0,978930.0,IonXpress 048.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.87,A:26203210;C:29193121;G:28716928;T:26377764;N:0,112,,,,26203210,29193121,28716928,26377764,0,SRX24083205,SRS20872859,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31632,SRR28480684,SRX24083204,SRS20872858,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.0001bp,,zebrafish C12H18Cl8 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.0001bp,sccp67,sccp67,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_047.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,87051784.0,765553.0,IonXpress 047.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.71,A:20538118;C:22989270;G:22623611;T:20900785;N:0,113,,,,20538118,22989270,22623611,20900785,0,SRX24083204,SRS20872858,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31633,SRR28480685,SRX24083203,SRS20872857,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.001bp,,zebrafish C12H18Cl8 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.001bp,sccp66,sccp66,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_046.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101355324.0,894473.0,IonXpress 046.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.31,A:24063826;C:26807513;G:26239594;T:24244391;N:0,113,,,,24063826,26807513,26239594,24244391,0,SRX24083203,SRS20872857,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31634,SRR28480686,SRX24083202,SRS20872856,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.01bp,,zebrafish C12H18Cl8 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.01bp,sccp65,sccp65,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_045.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,106816865.0,945364.0,IonXpress 045.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.99,A:25408018;C:28284679;G:27734471;T:25389697;N:0,112,,,,25408018,28284679,27734471,25389697,0,SRX24083202,SRS20872856,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31635,SRR28480687,SRX24083201,SRS20872855,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 0.1bp,,zebrafish C12H18Cl8 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 0.1bp,sccp64,sccp64,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_044.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,96444077.0,846020.0,IonXpress 044.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:114.00,A:23090892;C:25396368;G:24751151;T:23205666;N:0,114,,,,23090892,25396368,24751151,23205666,0,SRX24083201,SRS20872855,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31636,SRR28480688,SRX24083200,SRS20872854,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 1bp,,zebrafish C12H18Cl8 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 1bp,sccp63,sccp63,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_043.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109842592.0,979956.0,IonXpress 043.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.09,A:26296605;C:28856810;G:28387647;T:26301530;N:0,112,,,,26296605,28856810,28387647,26301530,0,SRX24083200,SRS20872854,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31637,SRR28480689,SRX24083199,SRS20872853,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 10bp,,zebrafish C12H18Cl8 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 10bp,sccp62,sccp62,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_042.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,104749712.0,928387.0,IonXpress 042.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.83,A:24853206;C:27526121;G:27117065;T:25253320;N:0,112,,,,24853206,27526121,27117065,25253320,0,SRX24083199,SRS20872853,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31638,SRR28480690,SRX24083198,SRS20872851,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C12H18Cl8 100bp,,zebrafish C12H18Cl8 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C12H18Cl8 100bp,sccp61,sccp61,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_041.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,107104635.0,950614.0,IonXpress 041.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.67,A:25435794;C:28220207;G:27928474;T:25520160;N:0,112,,,,25435794,28220207,27928474,25520160,0,SRX24083198,SRS20872851,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31639,SRR28480691,SRX24083197,SRS20872852,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.01bp,,zebrafish C10 65.02% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.01bp,sccp15,sccp15,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_005.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109950143.0,982487.0,IonXpress 005.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.91,A:25816549;C:29220009;G:28779207;T:26134378;N:0,111,,,,25816549,29220009,28779207,26134378,0,SRX24083197,SRS20872852,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31640,SRR28480692,SRX24083196,SRS20872850,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 5,,zebrafish control 5,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 5,CK5,CK5,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_040.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,122039187.0,1080433.0,IonXpress 040.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.95,A:28853507;C:32430101;G:31750885;T:29004694;N:0,112,,,,28853507,32430101,31750885,29004694,0,SRX24083196,SRS20872850,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31641,SRR28480693,SRX24083195,SRS20872849,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.0001bp,,zebrafish C10 13 63.0% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.0001bp,sccp57,sccp57,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_039.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,88344791.0,788912.0,IonXpress 039.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.98,A:20796976;C:23423614;G:23017973;T:21106228;N:0,111,,,,20796976,23423614,23017973,21106228,0,SRX24083195,SRS20872849,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31642,SRR28480694,SRX24083194,SRS20872848,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.001bp,,zebrafish C10 13 63.0% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.001bp,sccp56,sccp56,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_038.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,98021104.0,864236.0,IonXpress 038.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.42,A:23137220;C:26142070;G:25287236;T:23454578;N:0,113,,,,23137220,26142070,25287236,23454578,0,SRX24083194,SRS20872848,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31643,SRR28480695,SRX24083193,SRS20872847,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.01bp,,zebrafish C10 13 63.0% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.01bp,sccp55,sccp55,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_037.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108199442.0,958837.0,IonXpress 037.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.84,A:25771016;C:28607370;G:28048727;T:25772329;N:0,112,,,,25771016,28607370,28048727,25772329,0,SRX24083193,SRS20872847,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31644,SRR28480696,SRX24083192,SRS20872845,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 0.1bp,,zebrafish C10 13 63.0% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 0.1bp,sccp54,sccp54,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_036.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,105458972.0,934128.0,IonXpress 036.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.90,A:24924433;C:27906991;G:27340010;T:25287538;N:0,112,,,,24924433,27906991,27340010,25287538,0,SRX24083192,SRS20872845,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31645,SRR28480697,SRX24083191,SRS20872846,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 1bp,,zebrafish C10 13 63.0% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 1bp,sccp53,sccp53,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_035.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,109362618.0,968693.0,IonXpress 035.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.90,A:26005653;C:28896654;G:28371236;T:26089075;N:0,112,,,,26005653,28896654,28371236,26089075,0,SRX24083191,SRS20872846,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31646,SRR28480698,SRX24083190,SRS20872844,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 10bp,,zebrafish C10 13 63.0% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 10bp,sccp52,sccp52,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_034.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,150999296.0,1329642.0,IonXpress 034.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.56,A:35801710;C:39912702;G:39422840;T:35862044;N:0,113,,,,35801710,39912702,39422840,35862044,0,SRX24083190,SRS20872844,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31647,SRR28480699,SRX24083189,SRS20872843,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 63.0% Cl 100bp,,zebrafish C10 13 63.0% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 63.0% Cl 100bp,sccp51,sccp51,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_033.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,118326657.0,1050834.0,IonXpress 033.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.60,A:28048191;C:31348902;G:30800438;T:28129126;N:0,112,,,,28048191,31348902,30800438,28129126,0,SRX24083189,SRS20872843,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31648,SRR28480700,SRX24083188,SRS20872842,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 4,,zebrafish control 4,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 4,CK4,CK4,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_032.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108504007.0,962521.0,IonXpress 032.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.73,A:25803971;C:28561460;G:28211351;T:25927225;N:0,112,,,,25803971,28561460,28211351,25927225,0,SRX24083188,SRS20872842,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31649,SRR28480701,SRX24083187,SRS20872841,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.0001bp,,zebrafish C10 13 51.5% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.0001bp,sccp47,sccp47,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_031.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,106852149.0,944612.0,IonXpress 031.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.12,A:25364517;C:28191855;G:27708782;T:25586995;N:0,113,,,,25364517,28191855,27708782,25586995,0,SRX24083187,SRS20872841,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31650,SRR28480702,SRX24083186,SRS20872840,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 0.1bp,,zebrafish C10 65.02% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 0.1bp,sccp14,sccp14,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_004.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,101091383.0,892906.0,IonXpress 004.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.22,A:23773356;C:26804183;G:26509419;T:24004425;N:0,113,,,,23773356,26804183,26509419,24004425,0,SRX24083186,SRS20872840,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31651,SRR28480703,SRX24083185,SRS20872839,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.001bp,,zebrafish C10 13 51.5% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.001bp,sccp46,sccp46,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_030.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,108108886.0,950394.0,IonXpress 030.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.75,A:25735144;C:28605366;G:28028649;T:25739727;N:0,113,,,,25735144,28605366,28028649,25739727,0,SRX24083185,SRS20872839,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31652,SRR28480704,SRX24083184,SRS20872838,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.01bp,,zebrafish C10 13 51.5% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.01bp,sccp45,sccp45,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_029.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102776913.0,895617.0,IonXpress 029.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:114.76,A:24243608;C:27324915;G:26735990;T:24472400;N:0,114,,,,24243608,27324915,26735990,24472400,0,SRX24083184,SRS20872838,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31653,SRR28480705,SRX24083183,SRS20872837,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 0.1bp,,zebrafish C10 13 51.5% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 0.1bp,sccp44,sccp44,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_028.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,111374565.0,993365.0,IonXpress 028.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.12,A:26443074;C:29437482;G:29021416;T:26472593;N:0,112,,,,26443074,29437482,29021416,26472593,0,SRX24083183,SRS20872837,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31654,SRR28480706,SRX24083182,SRS20872835,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 1bp,,zebrafish C10 13 51.5% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 1bp,sccp43,sccp43,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_027.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,353606252.0,3115856.0,IonXpress 027.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.49,A:83702877;C:93175606;G:92029314;T:84698455;N:0,113,,,,83702877,93175606,92029314,84698455,0,SRX24083182,SRS20872835,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31655,SRR28480707,SRX24083181,SRS20872836,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 10bp,,zebrafish C10 13 51.5% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 10bp,sccp42,sccp42,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_026.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,111996140.0,1011611.0,IonXpress 026.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.71,A:26580599;C:29481350;G:29122266;T:26811925;N:0,110,,,,26580599,29481350,29122266,26811925,0,SRX24083181,SRS20872836,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31656,SRR28480708,SRX24083180,SRS20872834,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 13 51.5% Cl 100bp,,zebrafish C10 13 51.5% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 13 51.5% Cl 100bp,sccp41,sccp41,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_025.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,107004692.0,958688.0,IonXpress 025.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.62,A:25315357;C:28424669;G:27858900;T:25405766;N:0,111,,,,25315357,28424669,27858900,25405766,0,SRX24083180,SRS20872834,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31657,SRR28480709,SRX24083179,SRS20872833,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 3,,zebrafish control 3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 3,CK3,CK3,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_024.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,115240733.0,1026590.0,IonXpress 024.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.26,A:27141618;C:30563585;G:30140946;T:27394584;N:0,112,,,,27141618,30563585,30140946,27394584,0,SRX24083179,SRS20872833,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31658,SRR28480710,SRX24083178,SRS20872832,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.0001bp,,zebrafish C13 65.18% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.0001bp,sccp37,sccp37,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_023.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,112322500.0,989665.0,IonXpress 023.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.50,A:26507724;C:29696631;G:29314989;T:26803156;N:0,113,,,,26507724,29696631,29314989,26803156,0,SRX24083178,SRS20872832,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31659,SRR28480711,SRX24083177,SRS20872831,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.001bp,,zebrafish C13 65.18% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.001bp,sccp36,sccp36,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_022.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,113636579.0,1004782.0,IonXpress 022.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.10,A:26801369;C:30143688;G:29637971;T:27053551;N:0,113,,,,26801369,30143688,29637971,27053551,0,SRX24083177,SRS20872831,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31660,SRR28480712,SRX24083176,SRS20872830,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.01bp,,zebrafish C13 65.18% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.01bp,sccp35,sccp35,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_021.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,144380281.0,1275186.0,IonXpress 021.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.22,A:34269776;C:38139595;G:37631581;T:34339329;N:0,113,,,,34269776,38139595,37631581,34339329,0,SRX24083176,SRS20872830,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31661,SRR28480713,SRX24083175,SRS20872829,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 1bp,,zebrafish C10 65.02% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 1bp,sccp13,sccp13,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_003.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102583823.0,900891.0,IonXpress 003.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.87,A:24139707;C:27392431;G:26685917;T:24365768;N:0,113,,,,24139707,27392431,26685917,24365768,0,SRX24083175,SRS20872829,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31662,SRR28480714,SRX24083174,SRS20872828,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 0.1bp,,zebrafish C13 65.18% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 0.1bp,sccp34,sccp34,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_020.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,124781601.0,1107608.0,IonXpress 020.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.66,A:29614536;C:32815136;G:32647459;T:29704470;N:0,112,,,,29614536,32815136,32647459,29704470,0,SRX24083174,SRS20872828,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31663,SRR28480715,SRX24083173,SRS20872827,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 1bp,,zebrafish C13 65.18% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 1bp,sccp33,sccp33,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_019.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,91354022.0,810962.0,IonXpress 019.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.65,A:21489915;C:24311006;G:23804472;T:21748629;N:0,112,,,,21489915,24311006,23804472,21748629,0,SRX24083173,SRS20872827,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31664,SRR28480716,SRX24083172,SRS20872826,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 10bp,,zebrafish C13 65.18% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 10bp,sccp32,sccp32,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_018.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,99248975.0,882898.0,IonXpress 018.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.41,A:23400094;C:26451591;G:25795741;T:23601549;N:0,112,,,,23400094,26451591,25795741,23601549,0,SRX24083172,SRS20872826,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31665,SRR28480717,SRX24083171,SRS20872825,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C13 65.18% Cl 100bp,,zebrafish C13 65.18% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C13 65.18% Cl 100bp,sccp31,sccp31,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_017.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,116164616.0,1029965.0,IonXpress 017.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.79,A:27414271;C:30849960;G:30325830;T:27574555;N:0,112,,,,27414271,30849960,30325830,27574555,0,SRX24083171,SRS20872825,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31666,SRR28480718,SRX24083170,SRS20872824,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,control 2,,zebrafish control 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish control 2,CK2,CK2,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_016.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,97329986.0,867628.0,IonXpress 016.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.18,A:23139609;C:25709723;G:25171947;T:23308707;N:0,112,,,,23139609,25709723,25171947,23308707,0,SRX24083170,SRS20872824,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31667,SRR28480719,SRX24083169,SRS20872823,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.0001bp,,zebrafish C11 65.25% Cl 0.0001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.0001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.0001bp,sccp27,sccp27,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_015.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,95116322.0,857687.0,IonXpress 015.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:110.90,A:22496457;C:25247529;G:24767207;T:22605129;N:0,110,,,,22496457,25247529,24767207,22605129,0,SRX24083169,SRS20872823,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31668,SRR28480720,SRX24083168,SRS20872822,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.001bp,,zebrafish C11 65.25% Cl 0.001bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.001bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.001bp,sccp26,sccp26,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_014.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,100213781.0,882391.0,IonXpress 014.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.57,A:23838109;C:26629449;G:25891916;T:23854307;N:0,113,,,,23838109,26629449,25891916,23854307,0,SRX24083168,SRS20872822,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31669,SRR28480721,SRX24083167,SRS20872820,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.01bp,,zebrafish C11 65.25% Cl 0.01bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.01bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.01bp,sccp25,sccp25,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_013.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,110879716.0,991963.0,IonXpress 013.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.78,A:26185034;C:29382954;G:28898661;T:26413067;N:0,111,,,,26185034,29382954,28898661,26413067,0,SRX24083167,SRS20872820,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31670,SRR28480722,SRX24083166,SRS20872821,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 0.1bp,,zebrafish C11 65.25% Cl 0.1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 0.1bp,sccp24,sccp24,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_012.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,86622071.0,765510.0,IonXpress 012.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:113.16,A:20617429;C:23040948;G:22479932;T:20483762;N:0,113,,,,20617429,23040948,22479932,20483762,0,SRX24083166,SRS20872821,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31671,SRR28480723,SRX24083165,SRS20872819,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C11 65.25% Cl 1bp,,zebrafish C11 65.25% Cl 1bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 1bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C11 65.25% Cl 1bp,sccp23,sccp23,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_011.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,113129868.0,1006612.0,IonXpress 011.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.39,A:26916610;C:29806008;G:29493716;T:26913534;N:0,112,,,,26916610,29806008,29493716,26913534,0,SRX24083165,SRS20872819,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31672,SRR28480724,SRX24083164,SRS20872818,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 10bp,,zebrafish C10 65.02% Cl 10bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 10bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 10bp,sccp12,sccp12,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_002.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,102651027.0,912042.0,IonXpress 002.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:112.55,A:24135735;C:27359201;G:26643032;T:24513059;N:0,112,,,,24135735,27359201,26643032,24513059,0,SRX24083164,SRS20872818,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
31673,SRR28480725,SRX24083163,SRS20872817,SRP498323,PRJNA1092793,Transcriptome in zebrafish embryos by SCCPs,PRJNA1092793,Other,To assessment SCCPs effects of zenrafish  17 SCCPs were tested by reduced zebrfish transcriptome approach.,,,C10 65.02% Cl 100bp,,zebrafish C10 65.02% Cl 100bp,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 100bp|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish C10 65.02% Cl 100bp,sccp11,sccp11,RNA was extracted from zebrafish embryos post SCCPs exposure,,,RNA-Seq,TRANSCRIPTOMIC,Reduced Representation,PAIRED,ION_TORRENT,Ion Torrent Proton,,SRP498323,,,IonXpress_001.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq,fastq,103648935.0,926414.0,IonXpress 001.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq,0:111.88,A:24562676;C:27487365;G:26982312;T:24616582;N:0,111,,,,24562676,27487365,26982312,24616582,0,SRX24083163,SRS20872817,SRA1834887,"Nanjing University,|School of the Environment","Nanjing University,",,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,other,unknown,bulk,unknown,unknown,,China,2024-03-28,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33439,SRR30280831,SRX25741613,SRS22381131,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 10,BP10# DMSO 3,,strain:TU|isolate:90|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 10,BP10# DMSO 3,BP10# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-3.fastq.gz,fastq,92459659.0,929177.0,BP10# DMSO 3.fastq.gz,0:99.51,A:21511804;C:24897124;G:24440562;T:21610169;N:0,99,,,,21511804,24897124,24440562,21610169,0,SRX25741613,SRS22381131,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33440,SRR30280704,SRX25741612,SRS22381130,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 9,BP10# DMSO 2,,strain:TU|isolate:89|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 9,BP10# DMSO 2,BP10# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-2.fastq.gz,fastq,184067375.0,1813659.0,BP10# DMSO 2.fastq.gz,0:101.49,A:43014934;C:49110340;G:48560159;T:43381942;N:0,101,,,,43014934,49110340,48560159,43381942,0,SRX25741612,SRS22381130,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33441,SRR30280705,SRX25741611,SRS22381129,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 8,BP10# DMSO 1,,strain:TU|isolate:88|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 8,BP10# DMSO 1,BP10# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-DMSO-1.fastq.gz,fastq,148237805.0,1464542.0,BP10# DMSO 1.fastq.gz,0:101.22,A:34729919;C:39397602;G:39251519;T:34858765;N:0,101,,,,34729919,39397602,39251519,34858765,0,SRX25741611,SRS22381129,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33442,SRR30280706,SRX25741610,SRS22381128,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 7,BP10# 7,,strain:TU|isolate:87|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 7,BP10# 7,BP10# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-7.fastq.gz,fastq,164490060.0,1636480.0,BP10# 7.fastq.gz,0:100.51,A:38838318;C:43438465;G:43456970;T:38756307;N:0,100,,,,38838318,43438465,43456970,38756307,0,SRX25741610,SRS22381128,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33443,SRR30280707,SRX25741609,SRS22381127,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 6,BP10# 6,,strain:TU|isolate:86|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 6,BP10# 6,BP10# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-6.fastq.gz,fastq,155194512.0,1505703.0,BP10# 6.fastq.gz,0:103.07,A:36677853;C:40887150;G:40906247;T:36723262;N:0,103,,,,36677853,40887150,40906247,36723262,0,SRX25741609,SRS22381127,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33444,SRR30280708,SRX25741608,SRS22381126,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 5,BP10# 5,,strain:TU|isolate:85|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 5,BP10# 5,BP10# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-5.fastq.gz,fastq,163104451.0,1593080.0,BP10# 5.fastq.gz,0:102.38,A:38629973;C:43080977;G:42996215;T:38397286;N:0,102,,,,38629973,43080977,42996215,38397286,0,SRX25741608,SRS22381126,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33445,SRR30280709,SRX25741607,SRS22381125,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 4,BP10# 4,,strain:TU|isolate:84|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 4,BP10# 4,BP10# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-4.fastq.gz,fastq,141101402.0,1409537.0,BP10# 4.fastq.gz,0:100.10,A:33334876;C:37175155;G:37298446;T:33292925;N:0,100,,,,33334876,37175155,37298446,33292925,0,SRX25741607,SRS22381125,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33446,SRR30280710,SRX25741606,SRS22381124,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 3,BP10# 3,,strain:TU|isolate:83|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 3,BP10# 3,BP10# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-3.fastq.gz,fastq,156294355.0,1507427.0,BP10# 3.fastq.gz,0:103.68,A:36910418;C:41342273;G:41169658;T:36872006;N:0,103,,,,36910418,41342273,41169658,36872006,0,SRX25741606,SRS22381124,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33447,SRR30280711,SRX25741605,SRS22381123,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 2,BP10# 2,,strain:TU|isolate:82|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 2,BP10# 2,BP10# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-2.fastq.gz,fastq,111628166.0,1080707.0,BP10# 2.fastq.gz,0:103.29,A:26410755;C:29627534;G:29253738;T:26336139;N:0,103,,,,26410755,29627534,29253738,26336139,0,SRX25741605,SRS22381123,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33448,SRR30280712,SRX25741604,SRS22381122,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPAGE 1,BP10# 1,,strain:TU|isolate:81|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPAGE 1,BP10# 1,BP10# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP10#-1.fastq.gz,fastq,143973283.0,1411136.0,BP10# 1.fastq.gz,0:102.03,A:34301322;C:37717275;G:37805886;T:34148800;N:0,102,,,,34301322,37717275,37805886,34148800,0,SRX25741604,SRS22381122,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33449,SRR30280713,SRX25741603,SRS22381120,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 9,BP2# DMSO 2,,strain:TU|isolate:9|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 9,BP2# DMSO 2,BP2# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-2.fastq.gz,fastq,121679118.0,1146532.0,BP2# DMSO 2.fastq.gz,0:106.13,A:28957172;C:31903260;G:31955173;T:28863513;N:0,106,,,,28957172,31903260,31955173,28863513,0,SRX25741603,SRS22381120,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33450,SRR30280714,SRX25741602,SRS22381121,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 10,BP8# DMSO 3,,strain:TU|isolate:80|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 10,BP8# DMSO 3,BP8# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-3.fastq.gz,fastq,116509377.0,1201618.0,BP8# DMSO 3.fastq.gz,0:96.96,A:27076619;C:31149115;G:31146213;T:27137430;N:0,96,,,,27076619,31149115,31146213,27137430,0,SRX25741602,SRS22381121,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33451,SRR30280715,SRX25741601,SRS22381119,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 9,BP8# DMSO 2,,strain:TU|isolate:79|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 9,BP8# DMSO 2,BP8# DMSO 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-2.fastq.gz,fastq,126980560.0,1245267.0,BP8# DMSO 2.fastq.gz,0:101.97,A:30148136;C:33803559;G:33492078;T:29536787;N:0,101,,,,30148136,33803559,33492078,29536787,0,SRX25741601,SRS22381119,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33452,SRR30280716,SRX25741600,SRS22381118,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 8,BP8# DMSO 1,,strain:TU|isolate:78|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 8,BP8# DMSO 1,BP8# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-DMSO-1.fastq.gz,fastq,123397953.0,1167071.0,BP8# DMSO 1.fastq.gz,0:105.73,A:28979230;C:32683758;G:32531951;T:29203014;N:0,105,,,,28979230,32683758,32531951,29203014,0,SRX25741600,SRS22381118,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33453,SRR30280717,SRX25741599,SRS22381117,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 7,BP8# 7,,strain:TU|isolate:77|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 7,BP8# 7,BP8# 7,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-7.fastq.gz,fastq,117872895.0,1119299.0,BP8# 7.fastq.gz,0:105.31,A:27851183;C:31344900;G:30718485;T:27958327;N:0,105,,,,27851183,31344900,30718485,27958327,0,SRX25741599,SRS22381117,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33454,SRR30280718,SRX25741598,SRS22381116,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 6,BP8# 6,,strain:TU|isolate:76|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 6,BP8# 6,BP8# 6,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-6.fastq.gz,fastq,111957625.0,1071866.0,BP8# 6.fastq.gz,0:104.45,A:26648862;C:29449571;G:29516510;T:26342682;N:0,104,,,,26648862,29449571,29516510,26342682,0,SRX25741598,SRS22381116,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33455,SRR30280719,SRX25741597,SRS22381115,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 5,BP8# 5,,strain:TU|isolate:75|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 5,BP8# 5,BP8# 5,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-5.fastq.gz,fastq,126372290.0,1210093.0,BP8# 5.fastq.gz,0:104.43,A:30062430;C:33314558;G:33069100;T:29926202;N:0,104,,,,30062430,33314558,33069100,29926202,0,SRX25741597,SRS22381115,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33456,SRR30280720,SRX25741596,SRS22381114,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 4,BP8# 4,,strain:TU|isolate:74|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 4,BP8# 4,BP8# 4,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-4.fastq.gz,fastq,128721856.0,1239512.0,BP8# 4.fastq.gz,0:103.85,A:30267273;C:34185892;G:33688377;T:30580314;N:0,103,,,,30267273,34185892,33688377,30580314,0,SRX25741596,SRS22381114,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33457,SRR30280721,SRX25741595,SRS22381113,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 3,BP8# 3,,strain:TU|isolate:73|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 3,BP8# 3,BP8# 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-3.fastq.gz,fastq,128200329.0,1234995.0,BP8# 3.fastq.gz,0:103.81,A:30417908;C:33785230;G:33670842;T:30326349;N:0,103,,,,30417908,33785230,33670842,30326349,0,SRX25741595,SRS22381113,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33458,SRR30280722,SRX25741594,SRS22381112,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 2,BP8# 2,,strain:TU|isolate:72|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 2,BP8# 2,BP8# 2,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-2.fastq.gz,fastq,99353699.0,947145.0,BP8# 2.fastq.gz,0:104.90,A:23560131;C:26008128;G:26310676;T:23474764;N:0,104,,,,23560131,26008128,26310676,23474764,0,SRX25741594,SRS22381112,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33459,SRR30280723,SRX25741593,SRS22381111,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPTMC 1,BP8# 1,,strain:TU|isolate:71|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPTMC 1,BP8# 1,BP8# 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP8#-1.fastq.gz,fastq,101253709.0,974909.0,BP8# 1.fastq.gz,0:103.86,A:24014647;C:26648401;G:26749516;T:23841145;N:0,103,,,,24014647,26648401,26749516,23841145,0,SRX25741593,SRS22381111,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33460,SRR30280724,SRX25741592,SRS22381110,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPS 8,BP2# DMSO 1,,strain:TU|isolate:8|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPS 8,BP2# DMSO 1,BP2# DMSO 1,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP2#-DMSO-1.fastq.gz,fastq,54970926.0,518074.0,BP2# DMSO 1.fastq.gz,0:106.11,A:13057581;C:14507897;G:14456016;T:12949432;N:0,106,,,,13057581,14507897,14456016,12949432,0,SRX25741592,SRS22381110,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures
33461,SRR30280725,SRX25741591,SRS22381109,SRP527083,PRJNA1148320,Danio rerio Raw sequence reads,PRJNA1148320,Whole Genome Sequencing,Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.,,,,BPP 10,BP7# DMSO 3,,strain:TU|isolate:70|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,BPP 10,BP7# DMSO 3,BP7# DMSO 3,Ampliseq sequecing,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ION_TORRENT,Ion Torrent Proton,,SRP527083,,,BP7#-DMSO-3.fastq.gz,fastq,123214657.0,1237962.0,BP7# DMSO 3.fastq.gz,0:99.53,A:28785213;C:32846077;G:32681550;T:28901817;N:0,99,,,,28785213,32846077,32681550,28901817,0,SRX25741591,SRS22381109,SRA1949064,Shandong university|School and Hospital of Stomatology,Shandong university,,,,,,,,,,,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-17,Pharyngula,Embryo,Embryo Imprecise,All anatomical structures