rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
8076,ERR2304209,ERX2355537,ERS2201745,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep3,SAMEA104590463,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12,9 psen1K97Gfshet 24mth 13 03 2014 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz,fastq fastq,9318039088.0,38360343.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12,0:121.17 1:121.74,A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148,121,121,,,2583644589,2091813317,2105322994,2536795040,463148,ERX2355537,ERS2201745,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.93003,0.92836,0.26254,0.26157,0.68992,0.69593,0.48246,0.48292,134,134,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8077,ERR2304208,ERX2355536,ERS2201744,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep2,SAMEA104590462,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11,8 psen1K97Gfshet 24mth 13 03 2014 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz,fastq fastq,8559244581.0,35608377.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11,0:119.87 1:120.50,A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710,119,120,,,2397336730,1892236963,1910506310,2358778868,385710,ERX2355536,ERS2201744,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92422,0.92311,0.30514,0.30437,0.69578,0.7008,0.49054,0.48857,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8078,ERR2304207,ERX2355535,ERS2201743,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep1,SAMEA104590461,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590461|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep1|common name:zebrafish|sample name:Aged mutant biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10,7 psen1K97Gfshet 24mth 13 03 2014 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R1.fastq.gz 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R2.fastq.gz,fastq fastq,6521711648.0,27182062.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10,0:119.65 1:120.27,A:1831722484;C:1434689482;G:1449266189;T:1805677755;N:355738,119,120,,,1831722484,1434689482,1449266189,1805677755,355738,ERX2355535,ERS2201743,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92564,0.92498,0.29344,0.29212,0.69327,0.69964,0.48557,0.48942,86,86,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8079,ERR2304206,ERX2355534,ERS2201742,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep3,SAMEA104590460,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590460|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep3|common name:zebrafish|sample name:Aged wild type biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9,3 non mutant K97Gfs 24mth 13 03 2014 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R1.fastq.gz 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R2.fastq.gz,fastq fastq,6865452019.0,28646225.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9,0:119.50 1:120.16,A:1903309108;C:1535570672;G:1550661363;T:1875578941;N:331935,119,120,,,1903309108,1535570672,1550661363,1875578941,331935,ERX2355534,ERS2201742,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92997,0.92904,0.26949,0.26497,0.69485,0.70072,0.49378,0.50075,96,96,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8080,ERR2304205,ERX2355533,ERS2201741,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep2,SAMEA104590459,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590459|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep2|common name:zebrafish|sample name:Aged wild type biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8,2 non mutant K97Gfs 24mth 13 03 2014 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R1.fastq.gz 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R2.fastq.gz,fastq fastq,8418868343.0,34905186.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8,0:120.29 1:120.91,A:2334515884;C:1885784857;G:1900432559;T:2297775998;N:359045,120,120,,,2334515884,1885784857,1900432559,2297775998,359045,ERX2355533,ERS2201741,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.93078,0.92967,0.25478,0.25365,0.69372,0.69938,0.4988,0.49709,132,132,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8081,ERR2304204,ERX2355532,ERS2201740,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep1,SAMEA104590458,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590458|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep1|common name:zebrafish|sample name:Aged wild type biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7,1 non mutant K97Gfs 24mth 13 03 2014 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R1.fastq.gz 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R2.fastq.gz,fastq fastq,6628468736.0,27477727.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7,0:120.31 1:120.92,A:1839014115;C:1487750495;G:1497160978;T:1804205119;N:338029,120,120,,,1839014115,1487750495,1497160978,1804205119,338029,ERX2355532,ERS2201740,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92916,0.92783,0.28453,0.28375,0.69798,0.70289,0.48132,0.48227,125,125,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8082,ERR2304203,ERX2355531,ERS2201739,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep3,SAMEA104590457,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590457|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep3|common name:zebrafish|sample name:Young mutant biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6,12 psen1K97Gfshet 6mth 10 03 2016 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R1.fastq.gz 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R2.fastq.gz,fastq fastq,11485397100.0,38284657.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6,0:150 1:150,A:3206707597;C:2539306860;G:2721427816;T:3015264084;N:2690743,150,150,,,3206707597,2539306860,2721427816,3015264084,2690743,ERX2355531,ERS2201739,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92853,0.92813,0.26757,0.26433,0.68487,0.68903,0.47708,0.47074,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8083,ERR2304202,ERX2355530,ERS2201738,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep2,SAMEA104590456,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590456|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep2|common name:zebrafish|sample name:Young mutant biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5,11 psen1K97Gfshet 6mth 10 03 2016 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R1.fastq.gz 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R2.fastq.gz,fastq fastq,13258122000.0,44193740.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5,0:150 1:150,A:3781076311;C:2868334319;G:3063279426;T:3542309854;N:3122090,150,150,,,3781076311,2868334319,3063279426,3542309854,3122090,ERX2355530,ERS2201738,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91552,0.91659,0.32337,0.32168,0.69546,0.698,0.4697,0.47295,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8084,ERR2304201,ERX2355529,ERS2201737,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep1,SAMEA104590455,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4,10 psen1K97Gfshet 6mth 10 03 2016 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz,fastq fastq,11724649800.0,39082166.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4,0:150 1:150,A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083,150,150,,,3304100658,2560616667,2779636286,3077545106,2751083,ERX2355529,ERS2201737,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92121,0.91893,0.28263,0.27928,0.69073,0.6953,0.47174,0.46157,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8085,ERR2304200,ERX2355528,ERS2201736,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep3,SAMEA104590454,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590454|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep3|common name:zebrafish|sample name:Young wild type biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3,6 non mutant K97Gfs 6mth 10 03 2016 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R2.fastq.gz,fastq fastq,24923212200.0,83077374.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3,0:150 1:150,A:7077378299;C:5398402396;G:5838059014;T:6604505033;N:4867458,150,150,,,7077378299,5398402396,5838059014,6604505033,4867458,ERX2355528,ERS2201736,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91973,0.92144,0.29148,0.29015,0.69587,0.69994,0.46145,0.47047,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8086,ERR2304199,ERX2355527,ERS2201735,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep2,SAMEA104590453,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590453|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep2|common name:zebrafish|sample name:Young wild type biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2,5 non mutant K97Gfs 6mth 10 03 2016 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R2.fastq.gz,fastq fastq,7840317153.0,39006553.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2,0:101 1:100,A:2200490653;C:1718458832;G:1730278863;T:2188900320;N:2188485,101,100,,,2200490653,1718458832,1730278863,2188900320,2188485,ERX2355527,ERS2201735,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91783,0.91983,0.32092,0.32105,0.67714,0.67691,0.47312,0.47481,101,100,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8087,ERR2304198,ERX2355526,ERS2201734,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep1,SAMEA104590452,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1,4 non mutant K97Gfs 6mth 10 03 2016 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz,fastq fastq,13910901600.0,46369672.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1,0:150 1:150,A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629,150,150,,,3994738757,2957179645,3191379676,3764325893,3277629,ERX2355526,ERS2201734,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91399,0.9166,0.3202,0.31818,0.6942,0.698,0.46902,0.47111,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
28496,SRR26321412,SRX22029502,SRS19102283,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 1,R27,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R27,R27,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R27.fastq,fastq,23400.0,312.0,R27.fastq,0:75,A:7949;C:4612;G:4730;T:6100;N:9,75,,,,7949,4612,4730,6100,9,SRX22029502,SRS19102283,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89642,,0.06772,,0.99827,,0.75,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28497,SRR26321413,SRX22029501,SRS19102284,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 4,R22,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R22,R22,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R22.fastq,fastq,23400.0,312.0,R22.fastq,0:75,A:7470;C:4460;G:5063;T:6404;N:3,75,,,,7470,4460,5063,6404,3,SRX22029501,SRS19102284,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87073,,0.12167,,0.99801,,0.73157,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28498,SRR26321414,SRX22029500,SRS19102281,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,R21,R21,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R21,R21,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R21.fastq,fastq,23400.0,312.0,R21.fastq,0:75,A:7540;C:4349;G:4857;T:6646;N:8,75,,,,7540,4349,4857,6646,8,SRX22029500,SRS19102281,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.8839,,0.04494,,0.99768,,0.72769,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28499,SRR26321415,SRX22029499,SRS19102282,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 2,R18,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R18,R18,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R18.fastq,fastq,23400.0,312.0,R18.fastq,0:75,A:7380;C:4430;G:5069;T:6518;N:3,75,,,,7380,4430,5069,6518,3,SRX22029499,SRS19102282,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87259,,0.11196,,0.99784,,0.69791,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28500,SRR26321416,SRX22029498,SRS19102280,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 1,R17,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R17,R17,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R17.fastq,fastq,23400.0,312.0,R17.fastq,0:75,A:7322;C:4455;G:5111;T:6507;N:5,75,,,,7322,4455,5111,6507,5,SRX22029498,SRS19102280,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90439,,0.12749,,0.99813,,0.71052,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28501,SRR26321417,SRX22029497,SRS19102279,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 5,R1,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R1,R1,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R1.fastq,fastq,23400.0,312.0,R1.fastq,0:75,A:7934;C:4560;G:4922;T:5980;N:4,75,,,,7934,4560,4922,5980,4,SRX22029497,SRS19102279,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87045,,0.10526,,0.99805,,0.71978,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28502,SRR26321418,SRX22029496,SRS19102277,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 4,R64,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R64,R64,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R64.fastq,fastq,23400.0,312.0,R64.fastq,0:75,A:7844;C:4626;G:4804;T:6126;N:0,75,,,,7844,4626,4804,6126,0,SRX22029496,SRS19102277,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90119,,0.07509,,0.99839,,0.8,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28503,SRR26321419,SRX22029495,SRS19102278,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 3,R61,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R61,R61,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R61.fastq,fastq,23400.0,312.0,R61.fastq,0:75,A:7454;C:4556;G:4960;T:6425;N:5,75,,,,7454,4556,4960,6425,5,SRX22029495,SRS19102278,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89098,,0.06015,,0.99813,,0.77102,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28504,SRR26321420,SRX22029494,SRS19102276,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 4,30,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,30,30,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,30.fastq,fastq,23400.0,312.0,30.fastq,0:75,A:7732;C:4528;G:5150;T:5987;N:3,75,,,,7732,4528,5150,5987,3,SRX22029494,SRS19102276,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.88447,,0.13147,,0.99772,,0.71584,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28505,SRR26321421,SRX22029493,SRS19102275,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,R11,R11,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,R11,R11,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R11.fastq,fastq,23400.0,312.0,R11.fastq,0:75,A:7818;C:4507;G:5107;T:5956;N:12,75,,,,7818,4507,5107,5956,12,SRX22029493,SRS19102275,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89345,,0.11475,,0.99847,,0.82258,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28506,SRR26321422,SRX22029492,SRS19102274,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 2,31,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,31,31,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,31.fastq,fastq,23400.0,312.0,31.fastq,0:75,A:7470;C:4619;G:4802;T:6504;N:5,75,,,,7470,4619,4802,6504,5,SRX22029492,SRS19102274,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87699,,0.11111,,0.99829,,0.78918,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28507,SRR26321423,SRX22029491,SRS19102273,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 1,R9,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,R9,R9,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R9.fastq,fastq,23400.0,312.0,R9.fastq,0:75,A:8130;C:4537;G:4809;T:5917;N:7,75,,,,8130,4537,4809,5917,7,SRX22029491,SRS19102273,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.83588,,0.05725,,0.99801,,0.68586,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28508,SRR26321424,SRX22029490,SRS19102272,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 4,R33,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R33,R33,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R33.fastq,fastq,23400.0,312.0,R33.fastq,0:75,A:7745;C:4421;G:4867;T:6360;N:7,75,,,,7745,4421,4867,6360,7,SRX22029490,SRS19102272,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87259,,0.07335,,0.99805,,0.71428,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28509,SRR26321425,SRX22029489,SRS19102271,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 3,R31,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R31,R31,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R31.fastq,fastq,23400.0,312.0,R31.fastq,0:75,A:7441;C:4483;G:5163;T:6313;N:0,75,,,,7441,4483,5163,6313,0,SRX22029489,SRS19102271,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.9,,0.05925,,0.9977,,0.68325,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28510,SRR26321426,SRX22029488,SRS19102270,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 2,R29,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R29,R29,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R29.fastq,fastq,23400.0,312.0,R29.fastq,0:75,A:7379;C:4698;G:5166;T:6156;N:1,75,,,,7379,4698,5166,6156,1,SRX22029488,SRS19102270,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.91016,,0.05859,,0.99797,,0.74528,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28511,SRR26321427,SRX22029487,SRS19102269,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 2,R62,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R62,R62,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R62.fastq,fastq,23400.0,312.0,R62.fastq,0:75,A:7383;C:4566;G:4713;T:6728;N:10,75,,,,7383,4566,4713,6728,10,SRX22029487,SRS19102269,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.91571,,0.05363,,0.99835,,0.77674,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28512,SRR26321428,SRX22029486,SRS19102268,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,Replicate 1 for SHAM,SHAM 1,R63,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia: Melbourne|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R63,R63,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R63.fastq,fastq,23400.0,312.0,R63.fastq,0:75,A:7516;C:4606;G:4765;T:6508;N:5,75,,,,7516,4606,4765,6508,5,SRX22029486,SRS19102268,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90385,,0.0423,,0.99805,,0.72429,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28513,SRR31643557,SRX27006657,SRS23471106,SRP467901,PRJNA1026724,vertebrate lungs,PRJNA1026724,Other,We provide comprehensive datasets including RNA Seq and single cell RNA sequencing scRAN seq of multiple tissues for white spotted bamboo shark  scRNA seq of multiple tissues of the African lungfish and Senegal bichir  genome of the bearded dragon  scRAN seq of African bullfrog lung and central bearded dragon lung and H3k27ac and H3k4me1 CUT&Tag sequencing data of chicken embryonic lungs from stage E9 to study the origin and evelution of vertebrate lungs.,,pubmed:39953253,,,zebrafish,,strain:Cyprinidae|age:adult|collection date:2021 09|geo loc name:China: Wuhan city  Wuhan Province|sex:not collected|tissue:swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish :swim blader,zebrafish swimbladder,zebrafish swimbladder,sequencing for single cell gene expression,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP467901,,,Dr_Sb-3_S1_L003_R2_001.fastq.gz Dr_Sb-3_S1_L003_R1_001.fastq.gz Dr_Sb-2_S1_L001_R2_001.fastq.gz Dr_Sb-2_S1_L001_R1_001.fastq.gz Dr_Sb-1_S1_L001_R2_001.fastq.gz Dr_Sb-1_S1_L001_R1_001.fastq.gz,fastq fastq fastq fastq fastq fastq,,,Dr Sb 1 S1 L001 R1 001.fastq.gz,,,,,,,,,,,,SRX27006657,,SRA2029673,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,,,,,,,,,,,,,,,illumina,novaseq_era,unknown,random_priming,unknown,sc,single_cell_generic,generic-scrnaseq-only,,China,2024-12-08,Adult,Adult,Swim Bladder,Swim Bladder
29641,SRR27397714,SRX23073965,SRS20033317,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library10,PG2,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 10|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS10,RRBS10,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG2_L7_1.fq.gz PG2_L7_2.fq.gz,fastq fastq,981695400.0,3272318.0,PG2 L7 1.fq.gz,0:150 1:150,A:253124715;C:152724975;G:341105704;T:234698202;N:41804,150,150,,,253124715,152724975,341105704,234698202,41804,SRX23073965,SRS20033317,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.0164,0.00047,0.01505,0.00036,0.9961,0.99965,0.58102,0.47058,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29642,SRR27397715,SRX23073964,SRS20033316,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library9,PG1,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 9|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS9,RRBS9,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG1_L7_1.fq.gz PG1_L7_2.fq.gz,fastq fastq,1157067600.0,3856892.0,PG1 L7 1.fq.gz,0:150 1:150,A:278308283;C:162228777;G:432676687;T:283803806;N:50047,150,150,,,278308283,162228777,432676687,283803806,50047,SRX23073964,SRS20033316,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.02347,0.02319,0.02188,0.02162,0.99517,0.99519,0.50342,0.51027,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29643,SRR27397716,SRX23073963,SRS20033315,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library8,LG4,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS8,RRBS8,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG4_L7_1.fq.gz LG4_L7_2.fq.gz,fastq fastq,1080684300.0,3602281.0,LG4 L7 1.fq.gz,0:150 1:150,A:270759422;C:159278390;G:387693215;T:262907381;N:45892,150,150,,,270759422,159278390,387693215,262907381,45892,SRX23073963,SRS20033315,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01698,0.00033,0.01593,0.00026,0.99675,0.99979,0.4974,0.2,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29644,SRR27397717,SRX23073962,SRS20033314,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library7,LG3,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS7,RRBS7,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG3_L7_1.fq.gz LG3_L7_2.fq.gz,fastq fastq,1223063700.0,4076879.0,LG3 L7 1.fq.gz,0:150 1:150,A:301167012;C:182106743;G:443329321;T:296409064;N:51560,150,150,,,301167012,182106743,443329321,296409064,51560,SRX23073962,SRS20033314,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01787,0.01759,0.01644,0.01622,0.99545,0.99582,0.56826,0.56126,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29645,SRR27397718,SRX23073961,SRS20033313,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library6,LG2,,strain:ab|age:adult|collection date:2023 02 07|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS6,RRBS6,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG2_L7_1.fq.gz LG2_L7_2.fq.gz,fastq fastq,1188600300.0,3962001.0,LG2 L7 1.fq.gz,0:150 1:150,A:294477343;C:172669379;G:418732939;T:302669966;N:50673,150,150,,,294477343,172669379,418732939,302669966,50673,SRX23073961,SRS20033313,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.0205,0.02042,0.01903,0.01894,0.99584,0.99577,0.51685,0.51824,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29646,SRR27397719,SRX23073960,SRS20033312,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library5,LG1,,strain:ab|age:adult|collection date:2023 02 06|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS5,RRBS5,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG1_L7_1.fq.gz LG1_L7_2.fq.gz,fastq fastq,1048183200.0,3493944.0,LG1 L7 1.fq.gz,0:150 1:150,A:260330612;C:163890192;G:372783427;T:251133569;N:45400,150,150,,,260330612,163890192,372783427,251133569,45400,SRX23073960,SRS20033312,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01999,0.00059,0.01851,0.00045,0.99563,0.99961,0.49816,0.36842,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29647,SRR27397720,SRX23073959,SRS20033311,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library4,CG4,,strain:ab|age:adult|collection date:2023 02 05|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS4,RRBS4,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG4_L7_1.fq.gz CG4_L7_2.fq.gz,fastq fastq,1547200200.0,5157334.0,CG4 L7 1.fq.gz,0:150 1:150,A:389261224;C:230650937;G:559928386;T:367293552;N:66101,150,150,,,389261224,230650937,559928386,367293552,66101,SRX23073959,SRS20033311,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01121,0.00022,0.01024,0.00018,0.99713,0.99991,0.56111,1.0,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29648,SRR27397721,SRX23073958,SRS20033310,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library3,CG3,,strain:ab|age:adult|collection date:2023 02 04|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS3,RRBS3,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG3_L7_1.fq.gz CG3_L7_2.fq.gz,fastq fastq,1164022500.0,3880075.0,CG3 L7 1.fq.gz,0:150 1:150,A:281490630;C:172929357;G:423757698;T:285795200;N:49615,150,150,,,281490630,172929357,423757698,285795200,49615,SRX23073958,SRS20033310,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.0188,0.00046,0.01744,0.00039,0.99626,0.99981,0.55421,0.6,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29649,SRR27397722,SRX23073957,SRS20033309,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library12,PG4,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 12|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS12,RRBS12,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG4_L7_1.fq.gz PG4_L7_2.fq.gz,fastq fastq,937521000.0,3125070.0,PG4 L7 1.fq.gz,0:150 1:150,A:230277419;C:145742183;G:328432893;T:233027715;N:40790,150,150,,,230277419,145742183,328432893,233027715,40790,SRX23073957,SRS20033309,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01943,0.01926,0.01799,0.01786,0.99575,0.99588,0.51136,0.48062,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29650,SRR27397723,SRX23073956,SRS20033308,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library11,PG3,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 11|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS11,RRBS11,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG3_L7_1.fq.gz PG3_L7_2.fq.gz,fastq fastq,1256812500.0,4189375.0,PG3 L7 1.fq.gz,0:150 1:150,A:318736087;C:194540494;G:434374337;T:309107761;N:53821,150,150,,,318736087,194540494,434374337,309107761,53821,SRX23073956,SRS20033308,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01424,0.00046,0.01316,0.00036,0.99683,0.99975,0.49746,0.5,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29651,SRR27397724,SRX23073955,SRS20033307,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library2,CG2,,strain:ab|age:adult|collection date:2023 02 03|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS2,RRBS2,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG2_L7_1.fq.gz CG2_L7_2.fq.gz,fastq fastq,1157888400.0,3859628.0,CG2 L7 1.fq.gz,0:150 1:150,A:292628434;C:171796176;G:406707172;T:286706357;N:50261,150,150,,,292628434,171796176,406707172,286706357,50261,SRX23073955,SRS20033307,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.02036,0.02023,0.01903,0.01889,0.99616,0.99614,0.55102,0.57894,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29652,SRR27397725,SRX23073954,SRS20033306,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library1,CG1,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS1,RRBS1,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG1_L7_1.fq.gz CG1_L7_2.fq.gz,fastq fastq,1004867700.0,3349559.0,CG1 L7 1.fq.gz,0:150 1:150,A:247727849;C:158203386;G:350367173;T:248526527;N:42765,150,150,,,247727849,158203386,350367173,248526527,42765,SRX23073954,SRS20033306,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.02764,0.00147,0.0252,0.00121,0.99233,0.99926,0.51541,0.5,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
30673,SRR28233239,SRX23844453,SRS20664879,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b01,,strain:TRPA1b KO1|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b01,A1b01,A1b01,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1b-S1_1.fq.gz A1b-S1_2.fq.gz,fastq fastq,10214044500.0,34046815.0,A1b S1 1.fq.gz,0:150 1:150,A:2826731317;C:2254770618;G:2368382524;T:2764027721;N:132320,150,150,,,2826731317,2254770618,2368382524,2764027721,132320,SRX23844453,SRS20664879,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30674,SRR28233240,SRX23844452,SRS20664878,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT23,,strain:WT9|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT23,WT23,WT23,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-2-3_R1.fq.gz WT-2-3_R2.fq.gz,fastq fastq,6168655800.0,20562186.0,WT 2 3 R1.fq.gz,0:150 1:150,A:1556231017;C:1526432275;G:1545153210;T:1540414611;N:424687,150,150,,,1556231017,1526432275,1545153210,1540414611,424687,SRX23844452,SRS20664878,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30675,SRR28233241,SRX23844451,SRS20664877,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT22,,strain:WT8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT22,WT22,WT22,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-2-2_R1.fq.gz WT-2-2_R2.fq.gz,fastq fastq,6503274900.0,21677583.0,WT 2 2 R1.fq.gz,0:150 1:150,A:1677274145;C:1574139629;G:1591639511;T:1659773624;N:447991,150,150,,,1677274145,1574139629,1591639511,1659773624,447991,SRX23844451,SRS20664877,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30676,SRR28233242,SRX23844450,SRS20664876,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT21,,strain:WT7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT21,WT21,WT21,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-2-1_R1.fq.gz WT-2-1_R2.fq.gz,fastq fastq,6617487600.0,22058292.0,WT 2 1 R1.fq.gz,0:150 1:150,A:1701231328;C:1606849699;G:1625342674;T:1683607145;N:456754,150,150,,,1701231328,1606849699,1625342674,1683607145,456754,SRX23844450,SRS20664876,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30677,SRR28233243,SRX23844449,SRS20664875,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT13,,strain:WT6|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT13,WT13,WT13,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-1-3_R1.fq.gz WT-1-3_R2.fq.gz,fastq fastq,7102153500.0,23673845.0,WT 1 3 R1.fq.gz,0:150 1:150,A:1842496944;C:1707310744;G:1727403195;T:1824440904;N:501713,150,150,,,1842496944,1707310744,1727403195,1824440904,501713,SRX23844449,SRS20664875,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30678,SRR28233244,SRX23844448,SRS20664874,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT12,,strain:WT5|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT12,WT12,WT12,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-1-2_R1.fq.gz WT-1-2_R2.fq.gz,fastq fastq,6904290900.0,23014303.0,WT 1 2 R1.fq.gz,0:150 1:150,A:1794495968;C:1655549612;G:1677906470;T:1775860400;N:478450,150,150,,,1794495968,1655549612,1677906470,1775860400,478450,SRX23844448,SRS20664874,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30679,SRR28233245,SRX23844447,SRS20664873,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT11,,strain:WT4|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT11,WT11,WT11,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-1-1_R1.fq.gz WT-1-1_R2.fq.gz,fastq fastq,7005297000.0,23350990.0,WT 1 1 R1.fq.gz,0:150 1:150,A:1812285786;C:1684304098;G:1717096826;T:1791123167;N:487123,150,150,,,1812285786,1684304098,1717096826,1791123167,487123,SRX23844447,SRS20664873,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30680,SRR28233246,SRX23844446,SRS20664872,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT03,,strain:WT3|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT03,WT03,WT03,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-S3_1.fq.gz WT-S3_2.fq.gz,fastq fastq,5014921200.0,16716404.0,WT S3 1.fq.gz,0:150 1:150,A:1376105590;C:1123924635;G:1152769107;T:1361994867;N:127001,150,150,,,1376105590,1123924635,1152769107,1361994867,127001,SRX23844446,SRS20664872,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30681,SRR28233247,SRX23844445,SRS20664871,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b23,,strain:TRPA1b KO9|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b23,A1b23,A1b23,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-2-3_R1.fq.gz A1-2-3_R2.fq.gz,fastq fastq,6844595700.0,22815319.0,A1 2 3 R1.fq.gz,0:150 1:150,A:1778935800;C:1644607281;G:1662211377;T:1758352025;N:489217,150,150,,,1778935800,1644607281,1662211377,1758352025,489217,SRX23844445,SRS20664871,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30682,SRR28233248,SRX23844444,SRS20664870,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b22,,strain:TRPA1b KO8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b22,A1b22,A1b22,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-2-2_R1.fq.gz A1-2-2_R2.fq.gz,fastq fastq,6529918800.0,21766396.0,A1 2 2 R1.fq.gz,0:150 1:150,A:1681524014;C:1580514490;G:1605344761;T:1662085103;N:450432,150,150,,,1681524014,1580514490,1605344761,1662085103,450432,SRX23844444,SRS20664870,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30683,SRR28233249,SRX23844443,SRS20664869,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b21,,strain:TRPA1b KO7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b21,A1b21,A1b21,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-2-1_R1.fq.gz A1-2-1_R2.fq.gz,fastq fastq,6836499600.0,22788332.0,A1 2 1 R1.fq.gz,0:150 1:150,A:1769098120;C:1648663116;G:1667962343;T:1750293771;N:482250,150,150,,,1769098120,1648663116,1667962343,1750293771,482250,SRX23844443,SRS20664869,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30684,SRR28233250,SRX23844442,SRS20664868,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b13,,strain:TRPA1b KO6|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b13,A1b13,A1b13,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-1-3_R1.fq.gz A1-1-3_R2.fq.gz,fastq fastq,7024153800.0,23413846.0,A1 1 3 R1.fq.gz,0:150 1:150,A:1803658498;C:1704926954;G:1731475860;T:1783603775;N:488713,150,150,,,1803658498,1704926954,1731475860,1783603775,488713,SRX23844442,SRS20664868,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30685,SRR28233251,SRX23844441,SRS20664867,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b12,,strain:TRPA1b KO5|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b12,A1b12,A1b12,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-1-2_R1.fq.gz A1-1-2_R2.fq.gz,fastq fastq,6764278200.0,22547594.0,A1 1 2 R1.fq.gz,0:150 1:150,A:1765465821;C:1610874768;G:1638217652;T:1749259791;N:460168,150,150,,,1765465821,1610874768,1638217652,1749259791,460168,SRX23844441,SRS20664867,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30686,SRR28233252,SRX23844440,SRS20664866,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b11,,strain:TRPA1b KO4|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b11,A1b11,A1b11,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-1-1_R1.fq.gz A1-1-1_R2.fq.gz,fastq fastq,7001419800.0,23338066.0,A1 1 1 R1.fq.gz,0:150 1:150,A:1755052093;C:1727552789;G:1786513789;T:1731804911;N:496218,150,150,,,1755052093,1727552789,1786513789,1731804911,496218,SRX23844440,SRS20664866,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30687,SRR28233253,SRX23844439,SRS20664865,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b03,,strain:TRPA1b KO3|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b03,A1b03,A1b03,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1b-S3_1.fq.gz A1b-S3_2.fq.gz,fastq fastq,6656319000.0,22187730.0,A1b S3 1.fq.gz,0:150 1:150,A:1836354615;C:1486285665;G:1534973763;T:1798492449;N:212508,150,150,,,1836354615,1486285665,1534973763,1798492449,212508,SRX23844439,SRS20664865,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30688,SRR28233254,SRX23844438,SRS20664864,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b02,,strain:TRPA1b KO2|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b02,A1b02,A1b02,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1b-S2_1.fq.gz A1b-S2_2.fq.gz,fastq fastq,12350635200.0,41168784.0,A1b S2 1.fq.gz,0:150 1:150,A:3393503091;C:2740767056;G:2872562559;T:3343736443;N:66051,150,150,,,3393503091,2740767056,2872562559,3343736443,66051,SRX23844438,SRS20664864,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30689,SRR28233255,SRX23844437,SRS20664863,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT02,,strain:WT2|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT02,WT02,WT02,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-S2_1.fq.gz WT-S2_2.fq.gz,fastq fastq,6740391600.0,22467972.0,WT S2 1.fq.gz,0:150 1:150,A:1839600016;C:1523127157;G:1552667106;T:1824551017;N:446304,150,150,,,1839600016,1523127157,1552667106,1824551017,446304,SRX23844437,SRS20664863,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30690,SRR28233256,SRX23844436,SRS20664862,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT01,,strain:WT1|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT01,WT01,WT01,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-S1_1.fq.gz WT-S1_2.fq.gz,fastq fastq,7104288900.0,23680963.0,WT S1 1.fq.gz,0:150 1:150,A:1946897695;C:1592125410;G:1641002833;T:1923739782;N:523180,150,150,,,1946897695,1592125410,1641002833,1923739782,523180,SRX23844436,SRS20664862,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
32362,SRR29157958,SRX24679082,SRS21413713,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary,Model organism or animal sample from Danio rerio,Ovary NPX,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish ovary RNA seq from NPX,Ovary NPX,Ovary NPX,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,H4_2.fq.gz H4_1.fq.gz H3_2.fq.gz H3_1.fq.gz H2_2.fq.gz H2_1.fq.gz H1_2.fq.gz H1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,37288126200.0,124293754.0,H1 1.fq.gz,0:150 1:150,A:9870906480;C:8895442858;G:8761667172;T:9759826428;N:283262,150,150,,,9870906480,8895442858,8761667172,9759826428,283262,SRX24679082,SRS21413713,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93451,0.93482,0.01992,0.01985,0.75966,0.75943,0.45469,0.4556,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
32363,SRR29157959,SRX24679081,SRS21413712,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary,Model organism or animal sample from Danio rerio,Ovary Ctrl,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish ovary RNA seq from Control,Ovary CTRL,Ovary CTRL,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,D4_2.fq.gz D4_1.fq.gz D3_2.fq.gz D3_1.fq.gz D2_2.fq.gz D2_1.fq.gz D1_2.fq.gz D1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,48240351600.0,160801172.0,D1 1.fq.gz,0:150 1:150,A:12507813252;C:11711256340;G:11706267844;T:12313668932;N:1345232,150,150,,,12507813252,11711256340,11706267844,12313668932,1345232,SRX24679081,SRS21413712,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93217,0.93303,0.01595,0.01634,0.75948,0.75998,0.46158,0.46061,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
32364,SRR29157960,SRX24679080,SRS21413711,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish testis,Model organism or animal sample from Danio rerio,Testis NPX,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish testis RNA seq from NPX,Testis NPX,Testis NPX,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,G4_2.fq.gz G4_1.fq.gz G3_2.fq.gz G3_1.fq.gz G2_2.fq.gz G2_1.fq.gz G1_2.fq.gz G1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,48293186700.0,160977289.0,G1 1.fq.gz,0:150 1:150,A:12737664564;C:11515099418;G:11506913376;T:12532403181;N:1106161,150,150,,,12737664564,11515099418,11506913376,12532403181,1106161,SRX24679080,SRS21413711,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93531,0.93628,0.04883,0.04847,0.66707,0.66728,0.47213,0.47226,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
32365,SRR29157961,SRX24679079,SRS21413710,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis,Model organism or animal sample from Danio rerio,Testis CTRL,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish testis RNA seq from Control,Testis CTRL,Testis CTRL,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,C4_2.fq.gz C4_1.fq.gz C3_2.fq.gz C3_1.fq.gz C2_2.fq.gz C2_1.fq.gz C1_2.fq.gz C1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,47457731100.0,158192437.0,C1 1.fq.gz,0:150 1:150,A:12817545225;C:10993554835;G:10941137146;T:12704995076;N:498818,150,150,,,12817545225,10993554835,10941137146,12704995076,498818,SRX24679079,SRS21413710,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93023,0.9282,0.0889,0.08851,0.63106,0.63098,0.4869,0.48618,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
33609,SRR30247666,SRX25709110,SRS22350227,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3,KO3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3,hey25nt /  replicate 3,hey25nt /  replicate 3,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_3_1.fq.gz KO_3_2.fq.gz,fastq fastq,6793426200.0,22644754.0,KO 3 1.fq.gz,0:150 1:150,A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253,150,150,,,1845779030,1550159613,1539592354,1857860950,34253,SRX25709110,SRS22350227,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94555,0.92523,0.0631,0.06139,0.76672,0.76968,0.56501,0.57019,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33610,SRR30247667,SRX25709109,SRS22350226,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutantzebrafish hearts at 3 mpf  rep2,KO2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep2,hey25nt /  replicate 2,hey25nt /  replicate 2,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_2_1.fq.gz KO_2_2.fq.gz,fastq fastq,6577703400.0,21925678.0,KO 2 1.fq.gz,0:150 1:150,A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044,150,150,,,1795319867,1492750718,1485718638,1803881133,33044,SRX25709109,SRS22350226,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94565,0.92404,0.06212,0.06008,0.77281,0.77546,0.55478,0.56589,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33611,SRR30247668,SRX25709108,SRS22350225,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1,KO1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1,hey25nt /  replicate 1,hey25nt /  replicate 1,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_1_2.fq.gz KO_1_1.fq.gz,fastq fastq,6592159500.0,21973865.0,KO 1 1.fq.gz,0:150 1:150,A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050,150,150,,,1800707634,1491918482,1484850929,1814648405,34050,SRX25709108,SRS22350225,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94443,0.92689,0.06601,0.06488,0.76883,0.77033,0.58332,0.52175,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33612,SRR30247669,SRX25709107,SRS22350224,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3,WT3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3,hey2+/+ replicate 3,hey2+/+ replicate 3,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_3_1.fq.gz WT_3_2.fq.gz,fastq fastq,6582842700.0,21942809.0,WT 3 1.fq.gz,0:150 1:150,A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159,150,150,,,1796301568,1494922823,1487154319,1804427831,36159,SRX25709107,SRS22350224,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94446,0.92023,0.06492,0.06289,0.76694,0.7699,0.55651,0.53407,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33613,SRR30247670,SRX25709106,SRS22350223,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2,WT2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2,hey2+/+ replicate 2,hey2+/+ replicate 2,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_2_2.fq.gz WT_2_1.fq.gz,fastq fastq,6632526000.0,22108420.0,WT 2 1.fq.gz,0:150 1:150,A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298,150,150,,,1811392253,1505075703,1495091968,1820928778,37298,SRX25709106,SRS22350223,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94532,0.92096,0.06496,0.06227,0.76564,0.76909,0.56754,0.57117,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33614,SRR30247671,SRX25709105,SRS22350222,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1,WT1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1,hey2+/+ replicate 1,hey2+/+ replicate 1,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_1_1.fq.gz WT_1_2.fq.gz,fastq fastq,6601461900.0,22004873.0,WT 1 1.fq.gz,0:150 1:150,A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021,150,150,,,1816453592,1485325900,1476423985,1823223402,35021,SRX25709105,SRS22350222,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.9482,0.92609,0.05744,0.0553,0.77423,0.77699,0.53884,0.54075,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33833,SRR31441376,SRX26810183,SRS22696876,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,HO 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 2,HO 1,HO 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600987--HO_2H.R1.raw.fastq.gz L1EHF0600987--HO_2H.R2.raw.fastq.gz,fastq fastq,6373025366.0,21102733.0,L1EHF0600987  HO 2H.R1.raw.fastq.gz,0:151 1:151,A:1745363166;C:1436102356;G:1463099869;T:1728443182;N:16793,151,151,,,1745363166,1436102356,1463099869,1728443182,16793,SRX26810183,SRS22696876,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
33834,SRR30732053,SRX26134987,SRS22696876,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,HO 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 1,HO 1,HO 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600986--H0_1H.R1.raw.fastq.gz L1EHF0600986--H0_1H.R2.raw.fastq.gz,fastq fastq,6369597666.0,21091383.0,L1EHF0600986  H0 1H.R1.raw.fastq.gz,0:151 1:151,A:1718159779;C:1459536211;G:1492957247;T:1698927602;N:16827,151,151,,,1718159779,1459536211,1492957247,1698927602,16827,SRX26134987,SRS22696876,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-09-19,Adult,Adult,Heart,Cardiovascular System
33835,SRR30732054,SRX26134986,SRS22696875,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2,WT 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 2,WT 2,WT 2,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600985--WT_2H.R1.raw.fastq.gz L1EHF0600985--WT_2H.R2.raw.fastq.gz,fastq fastq,6431668934.0,21296917.0,L1EHF0600985  WT 2H.R1.raw.fastq.gz,0:151 1:151,A:1743394409;C:1464490412;G:1498514260;T:1725252317;N:17536,151,151,,,1743394409,1464490412,1498514260,1725252317,17536,SRX26134986,SRS22696875,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-09-19,Adult,Adult,Heart,Cardiovascular System
33836,SRR30732055,SRX26134985,SRS22696874,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1,WT 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 1,WT 1,WT 1,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600984--WT_1H.R1.raw.fastq.gz L1EHF0600984--WT_1H.R2.raw.fastq.gz,fastq fastq,6277896574.0,20787737.0,L1EHF0600984  WT 1H.R1.raw.fastq.gz,0:151 1:151,A:1703988195;C:1423563137;G:1475908891;T:1674419696;N:16655,151,151,,,1703988195,1423563137,1475908891,1674419696,16655,SRX26134985,SRS22696874,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-09-19,Adult,Adult,Heart,Cardiovascular System
34188,SRR31441224,SRX26810034,SRS23295247,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a8nt /  mutant cryosection zebrafish hearts at 6 mpf 8 mpf  rep2,HO 2 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 2,HO 2,HO 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200826-HO_2.R1.raw.fastq.gz L1EIA1200826-HO_2.R2.raw.fastq.gz,fastq fastq,7242400014.0,23981457.0,L1EIA1200826 HO 2.R1.raw.fastq.gz,0:151 1:151,A:2002602509;C:1618196753;G:1648132346;T:1968161693;N:5306713,151,151,,,2002602509,1618196753,1648132346,1968161693,5306713,SRX26810034,SRS23295247,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34189,SRR31441225,SRX26810033,SRS23295246,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a8nt /  mutant zebrafish cryosection  hearts at 6 mpf 8 mpf  rep1,HO 1 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 1,HO 1,HO 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200825-HO_1.R1.raw.fastq.gz L1EIA1200825-HO_1.R2.raw.fastq.gz,fastq fastq,7908051502.0,26185601.0,L1EIA1200825 HO 1.R1.raw.fastq.gz,0:151 1:151,A:2187398944;C:1761592009;G:1795611307;T:2157740883;N:5708359,151,151,,,2187398944,1761592009,1795611307,2157740883,5708359,SRX26810033,SRS23295246,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34190,SRR31441226,SRX26810032,SRS23295245,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a+/+ zebrafish cryosection hearts at 6 mpf 8 mpf  rep2,WT 2 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 2,WT 2,WT 2,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200823-WT_2.R1.raw.fastq.gz L1EIA1200823-WT_2.R2.raw.fastq.gz,fastq fastq,7322202306.0,24245703.0,L1EIA1200823 WT 2.R1.raw.fastq.gz,0:151 1:151,A:2040218817;C:1615688362;G:1649087360;T:2012040914;N:5166853,151,151,,,2040218817,1615688362,1649087360,2012040914,5166853,SRX26810032,SRS23295245,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34191,SRR31441227,SRX26810031,SRS23295244,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a+/+ zebrafish  cryosection hearts at 6 mpf 8 mpf  rep1,WT 1 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 1,WT 1,WT 1,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200822-WT_1.R1.raw.fastq.gz L1EIA1200822-WT_1.R2.raw.fastq.gz,fastq fastq,7055242460.0,23361730.0,L1EIA1200822 WT 1.R1.raw.fastq.gz,0:151 1:151,A:1997464555;C:1527077848;G:1561244846;T:1964383184;N:5072027,151,151,,,1997464555,1527077848,1561244846,1964383184,5072027,SRX26810031,SRS23295244,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34198,SRR31479986,SRX26848533,SRS23332379,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type3B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type3B 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 08|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type3B 2,Type3B 2,Type3B 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600995--Type3B_2.R1.raw.fastq.gz L1EHF0600995--Type3B_2.R2.raw.fastq.gz,fastq fastq,7042308404.0,23318902.0,L1EHF0600995  Type3B 2.R1.raw.fastq.gz,0:151 1:151,A:1844855580;C:1674932476;G:1701372344;T:1821129313;N:18691,151,151,,,1844855580,1674932476,1701372344,1821129313,18691,SRX26848533,SRS23332379,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34199,SRR31479987,SRX26848532,SRS23332378,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type3B 1  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type3B 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 07|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type3B 1,Type3B 1,Type3B 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600994--Type3B_1.R1.raw.fastq.gz L1EHF0600994--Type3B_1.R2.raw.fastq.gz,fastq fastq,9559607056.0,31654328.0,L1EHF0600994  Type3B 1.R1.raw.fastq.gz,0:151 1:151,A:2506873093;C:2261724862;G:2309662215;T:2481321575;N:25311,151,151,,,2506873093,2261724862,2309662215,2481321575,25311,SRX26848532,SRS23332378,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34200,SRR31479988,SRX26848531,SRS23332377,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type2B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type2B 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 06|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type2B 2,Type2B 2,Type2B 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600993--Type2B_2.R1.raw.fastq.gz L1EHF0600993--Type2B_2.R2.raw.fastq.gz,fastq fastq,8451570566.0,27985333.0,L1EHF0600993  Type2B 2.R1.raw.fastq.gz,0:151 1:151,A:2206016865;C:2013747714;G:2053206643;T:2178577239;N:22105,151,151,,,2206016865,2013747714,2053206643,2178577239,22105,SRX26848531,SRS23332377,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34201,SRR31479989,SRX26848530,SRS23332376,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type2B 1  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type2B 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 05|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type2B 1,Type2B 1,Type2B 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600992--Type2B_1.R1.raw.fastq.gz L1EHF0600992--Type2B_1.R2.raw.fastq.gz,fastq fastq,8173656576.0,27065088.0,L1EHF0600992  Type2B 1.R1.raw.fastq.gz,0:151 1:151,A:2108108352;C:1972206034;G:2007561479;T:2085759073;N:21638,151,151,,,2108108352,1972206034,2007561479,2085759073,21638,SRX26848530,SRS23332376,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34202,SRR31479990,SRX26848529,SRS23332375,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type1B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type1B 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 04|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type1B 2,Type1B 2,Type1B 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600991--Type1B_2.R1.raw.fastq.gz L1EHF0600991--Type1B_2.R2.raw.fastq.gz,fastq fastq,6856733934.0,22704417.0,L1EHF0600991  Type1B 2.R1.raw.fastq.gz,0:151 1:151,A:1819254779;C:1602255119;G:1640783411;T:1794422519;N:18106,151,151,,,1819254779,1602255119,1640783411,1794422519,18106,SRX26848529,SRS23332375,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34203,SRR31479991,SRX26848528,SRS23332374,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type1B 1 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type1B 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 03|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type1B 1,Type1B 1,Type1B 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600990--Type1B_1.R1.raw.fastq.gz L1EHF0600990--Type1B_1.R2.raw.fastq.gz,fastq fastq,8199716760.0,27151380.0,L1EHF0600990  Type1B 1.R1.raw.fastq.gz,0:151 1:151,A:2143640345;C:1952882726;G:1983987224;T:2119185119;N:21346,151,151,,,2143640345,1952882726,1983987224,2119185119,21346,SRX26848528,SRS23332374,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34204,SRR31479992,SRX26848527,SRS23332373,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for WT 2B   abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep2,WT 2B,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 02|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 2B,WT 2B,WT 2B,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600989--WT_2B.R1.raw.fastq.gz L1EHF0600989--WT_2B.R2.raw.fastq.gz,fastq fastq,7647939204.0,25324302.0,L1EHF0600989  WT 2B.R1.raw.fastq.gz,0:151 1:151,A:1987849331;C:1831909030;G:1863287600;T:1964873314;N:19929,151,151,,,1987849331,1831909030,1863287600,1964873314,19929,SRX26848527,SRS23332373,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34205,SRR31479993,SRX26848526,SRS23332372,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for WT 1B   abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,WT 1B,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 01|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 1B,WT 1B,WT 1B,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600988--WT_1B.R1.raw.fastq.gz L1EHF0600988--WT_1B.R2.raw.fastq.gz,fastq fastq,6899503476.0,22846038.0,L1EHF0600988  WT 1B.R1.raw.fastq.gz,0:151 1:151,A:1785929563;C:1655039537;G:1701749629;T:1756766946;N:17801,151,151,,,1785929563,1655039537,1701749629,1756766946,17801,SRX26848526,SRS23332372,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34593,SRR32128857,SRX27475161,SRS23899211,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,lighttreated4,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable10|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable10|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish10|isolation source:zebrafish10|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 10,library 10,DNA barcode10,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,lighttreated4.read1.fastq.gz lighttreated4.read2.fastq.gz,fastq fastq,6388100400.0,21293668.0,lighttreated4.read1.fastq.gz,0:150 1:150,A:1711345062;C:1474552325;G:1531680528;T:1670485285;N:37200,150,150,,,1711345062,1474552325,1531680528,1670485285,37200,SRX27475161,SRS23899211,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34594,SRR32128858,SRX27475160,SRS23899210,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,lighttreated3,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable9|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable9|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish9|isolation source:zebrafish9|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 9,library 9,DNA barcode9,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,lighttreated3.read1.fastq.gz lighttreated3.read2.fastq.gz,fastq fastq,7919383200.0,26397944.0,lighttreated3.read1.fastq.gz,0:150 1:150,A:2135212601;C:1813586654;G:1892878979;T:2077658764;N:46202,150,150,,,2135212601,1813586654,1892878979,2077658764,46202,SRX27475160,SRS23899210,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34595,SRR32128859,SRX27475159,SRS23899209,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,lighttreated2,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable8|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable8|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish8|isolation source:zebrafish8|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 8,library 8,DNA barcode8,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,lighttreated2.read1.fastq.gz lighttreated2.read2.fastq.gz,fastq fastq,7060994100.0,23536647.0,lighttreated2.read1.fastq.gz,0:150 1:150,A:1921099545;C:1595276449;G:1668657714;T:1875918159;N:42233,150,150,,,1921099545,1595276449,1668657714,1875918159,42233,SRX27475159,SRS23899209,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34596,SRR32128860,SRX27475158,SRS23899208,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,lighttreated1,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable7|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable7|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish7|isolation source:zebrafish7|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 7,library 7,DNA barcode7,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,lighttreated1.read1.fastq.gz lighttreated1.read2.fastq.gz,fastq fastq,6908625300.0,23028751.0,lighttreated1.read1.fastq.gz,0:150 1:150,A:1872190225;C:1565342714;G:1644929113;T:1826124355;N:38893,150,150,,,1872190225,1565342714,1644929113,1826124355,38893,SRX27475158,SRS23899208,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34597,SRR32128861,SRX27475157,SRS23899207,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,darktreated6,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable6|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable6|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish6|isolation source:zebrafish6|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 6,library 6,DNA barcode6,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,darktreated6.read1.fastq.gz darktreated6.read2.fastq.gz,fastq fastq,8601630900.0,28672103.0,darktreated6.read1.fastq.gz,0:150 1:150,A:2318530970;C:1973292572;G:2040962638;T:2268796005;N:48715,150,150,,,2318530970,1973292572,2040962638,2268796005,48715,SRX27475157,SRS23899207,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34598,SRR32128862,SRX27475156,SRS23899206,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,darktreated5,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable5|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable5|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish5|isolation source:zebrafish5|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 5,library 5,DNA barcode5,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,darktreated5.read1.fastq.gz darktreated5.read2.fastq.gz,fastq fastq,8265255300.0,27550851.0,darktreated5.read1.fastq.gz,0:150 1:150,A:2224219375;C:1898065838;G:1969603341;T:2173318912;N:47834,150,150,,,2224219375,1898065838,1969603341,2173318912,47834,SRX27475156,SRS23899206,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34599,SRR32128863,SRX27475155,SRS23899205,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,darktreated4,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable4|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable4|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish4|isolation source:zebrafish4|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 4,library 4,DNA barcode4,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,darktreated4.read1.fastq.gz darktreated4.read2.fastq.gz,fastq fastq,8061663600.0,26872212.0,darktreated4.read1.fastq.gz,0:150 1:150,A:2171664867;C:1853256385;G:1909447014;T:2127248788;N:46546,150,150,,,2171664867,1853256385,1909447014,2127248788,46546,SRX27475155,SRS23899205,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34600,SRR32128864,SRX27475154,SRS23899204,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,darktreated3,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable3|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable3|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish3|isolation source:zebrafish3|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 3,library 3,DNA barcode3,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,darktreated3.read1.fastq.gz darktreated3.read2.fastq.gz,fastq fastq,8287650300.0,27625501.0,darktreated3.read1.fastq.gz,0:150 1:150,A:2231337901;C:1902488349;G:1971440974;T:2182335741;N:47335,150,150,,,2231337901,1902488349,1971440974,2182335741,47335,SRX27475154,SRS23899204,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34601,SRR32128865,SRX27475153,SRS23899203,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,lighttreated6,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable12|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable12|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish12|isolation source:zebrafish12|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 12,library 12,DNA barcode12,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,lighttreated6.read1.fastq.gz lighttreated6.read2.fastq.gz,fastq fastq,7610579400.0,25368598.0,lighttreated6.read1.fastq.gz,0:150 1:150,A:2063115765;C:1733106391;G:1795336188;T:2018975316;N:45740,150,150,,,2063115765,1733106391,1795336188,2018975316,45740,SRX27475153,SRS23899203,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34602,SRR32128866,SRX27475152,SRS23899202,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,lighttreated5,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable11|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable11|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish11|isolation source:zebrafish11|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 11,library 11,DNA barcode11,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,lighttreated5.read1.fastq.gz lighttreated5.read2.fastq.gz,fastq fastq,6677234100.0,22257447.0,lighttreated5.read1.fastq.gz,0:150 1:150,A:1812295746;C:1506030273;G:1585674870;T:1773195250;N:37961,150,150,,,1812295746,1506030273,1585674870,1773195250,37961,SRX27475152,SRS23899202,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34603,SRR32128867,SRX27475151,SRS23899201,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,darktreated2,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable2|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable2|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish2|isolation source:zebrafish2|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 2,library 2,DNA barcode2,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,darktreated2.read1.fastq.gz darktreated2.read2.fastq.gz,fastq fastq,8723972700.0,29079909.0,darktreated2.read1.fastq.gz,0:150 1:150,A:2341340036;C:2009282478;G:2082163796;T:2291135873;N:50517,150,150,,,2341340036,2009282478,2082163796,2291135873,50517,SRX27475151,SRS23899201,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
34604,SRR32128868,SRX27475150,SRS23899200,SRP559934,PRJNA1215774,3 mpf dark reared zebrafish eye RNA sequencing,PRJNA1215774,Other,Outdoor time and light intensity are important emerging factors affecting myopia; however  the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment  3 mpf zebrafish eye RNA sequencing was performed.,,,,,darktreated1,,strain:not applicable|isolate:Sun Yat sen University|breed:not applicable1|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable1|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish1|isolation source:zebrafish1|BioSampleModel:Model organism or animal,,,,,,,,,sample info,library 1,library 1,DNA barcode1,,,WXS,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP559934,,,darktreated1.read1.fastq.gz darktreated1.read2.fastq.gz,fastq fastq,7940928300.0,26469761.0,darktreated1.read1.fastq.gz,0:150 1:150,A:2133717650;C:1824526059;G:1895330033;T:2087310578;N:43980,150,150,,,2133717650,1824526059,1895330033,2087310578,43980,SRX27475150,SRS23899200,SRA2060897,zhujiang hospital|ophthalmology,zhujiang hospital,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-01-25,Undetermined,Adult,Undetermined,Undetermined
35992,SRR33967648,SRX29166369,SRS25367088,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 5,M50 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_5_1.fq.gz M50_5_2.fq.gz,fastq fastq,5682275100.0,18940917.0,M50 5 1.fq.gz,0:150 1:150,A:1475455936;C:1352416727;G:1390067010;T:1463846184;N:489243,150,150,,,1475455936,1352416727,1390067010,1463846184,489243,SRX29166369,SRS25367088,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35993,SRR33967649,SRX29166368,SRS25367085,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 4,M50 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_4_1.fq.gz M50_4_2.fq.gz,fastq fastq,6862983600.0,22876612.0,M50 4 1.fq.gz,0:150 1:150,A:1826390013;C:1586928364;G:1633332758;T:1815810150;N:522315,150,150,,,1826390013,1586928364,1633332758,1815810150,522315,SRX29166368,SRS25367085,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System