rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
62,DRR032762,DRX029568,DRS049967,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 3,SAMD00028159,,sample name:Dr prime5 6 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028159,DRX029568,Dr prime5 6 3,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028159,,,,3903332800.0,39033328.0,DRR032762,0:100 1:0,A:1050045822;C:908538410;G:900588661;T:1044116537;N:43370,100,0,,,1050045822,908538410,900588661,1044116537,43370,DRX029568,DRS049967,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92761,,0.07976,,0.69126,,0.46568,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
63,DRR032761,DRX029567,DRS049966,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 2,SAMD00028158,,sample name:Dr prime5 6 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028158,DRX029567,Dr prime5 6 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028158,,,,3678549700.0,36785497.0,DRR032761,0:100 1:0,A:986526644;C:857762765;G:853417738;T:980801764;N:40789,100,0,,,986526644,857762765,853417738,980801764,40789,DRX029567,DRS049966,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92689,,0.07872,,0.6928,,0.46577,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
64,DRR032760,DRX029566,DRS049965,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 1,SAMD00028157,,sample name:Dr prime5 6 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028157,DRX029566,Dr prime5 6 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028157,,,,3863129500.0,38631295.0,DRR032760,0:100 1:0,A:1035240477;C:901625010;G:895370149;T:1030851937;N:41927,100,0,,,1035240477,901625010,895370149,1030851937,41927,DRX029566,DRS049965,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92337,,0.07522,,0.69315,,0.46516,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
65,DRR032759,DRX029565,DRS049964,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime25 2,SAMD00028156,,sample name:Dr prime25 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028156,DRX029565,Dr prime25 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028156,,,,3750136100.0,37501361.0,DRR032759,0:100 1:0,A:1013528040;C:866734984;G:862431819;T:1007403208;N:38049,100,0,,,1013528040,866734984,862431819,1007403208,38049,DRX029565,DRS049964,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92019,,0.09079,,0.68304,,0.47083,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
66,DRR032758,DRX029564,DRS049963,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime25 1,SAMD00028155,,sample name:Dr prime25 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028155,DRX029564,Dr prime25 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028155,,,,3544862700.0,35448627.0,DRR032758,0:100 1:0,A:952135895;C:825841753;G:821757889;T:945087927;N:39236,100,0,,,952135895,825841753,821757889,945087927,39236,DRX029564,DRS049963,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92229,,0.08344,,0.68525,,0.466,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
67,DRR032757,DRX029563,DRS049962,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 97 individuals,Dr bud 2,SAMD00028154,,sample name:Dr bud 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028154,DRX029563,Dr bud 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028154,,,,4104778200.0,41047782.0,DRR032757,0:100 1:0,A:1116316188;C:944738800;G:936257056;T:1107423486;N:42670,100,0,,,1116316188,944738800,936257056,1107423486,42670,DRX029563,DRS049962,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92945,,0.10493,,0.73407,,0.47824,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
68,DRR032756,DRX029562,DRS049961,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr bud 1,SAMD00028153,,sample name:Dr bud 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028153,DRX029562,Dr bud 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028153,,,,4540291000.0,45402910.0,DRR032756,0:100 1:0,A:1237914068;C:1042346110;G:1033172731;T:1226799791;N:58300,100,0,,,1237914068,1042346110,1033172731,1226799791,58300,DRX029562,DRS049961,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92628,,0.10478,,0.7391,,0.46461,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
9199,ERR202605,ERX177290,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#8.bam,bam,2121913050.0,14146087.0,SC RUN 7991 5#8,0:75 1:75,A:567258901;C:498104770;G:490053960;T:566313017;N:182402,75,75,,,567258901,498104770,490053960,566313017,182402,ERX177290,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.94,0.94028,0.03528,0.03489,0.79064,0.79178,0.47341,0.4765,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9200,ERR202604,ERX177289,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#7.bam,bam,2219955900.0,14799706.0,SC RUN 7991 5#7,0:75 1:75,A:591871553;C:522813580;G:513375455;T:591698075;N:197237,75,75,,,591871553,522813580,513375455,591698075,197237,ERX177289,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.93987,0.94046,0.02941,0.02961,0.79427,0.7947,0.47542,0.47795,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9201,ERR202603,ERX177288,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#6.bam,bam,1955600700.0,13037338.0,SC RUN 7991 5#6,0:75 1:75,A:519562252;C:462848772;G:455819957;T:517200965;N:168754,75,75,,,519562252,462848772,455819957,517200965,168754,ERX177288,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93833,0.93957,0.03684,0.0371,0.79608,0.79663,0.47421,0.47624,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9202,ERR202602,ERX177287,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#5.bam,bam,2016609300.0,13444062.0,SC RUN 7991 5#5,0:75 1:75,A:538289622;C:474363061;G:465399227;T:538378222;N:179168,75,75,,,538289622,474363061,465399227,538378222,179168,ERX177287,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93831,0.93934,0.03188,0.03148,0.79582,0.79632,0.47508,0.4759,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9203,ERR202601,ERX177286,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#4.bam,bam,2365931250.0,15772875.0,SC RUN 7991 5#4,0:75 1:75,A:636503744;C:554252371;G:544819310;T:630147977;N:207848,75,75,,,636503744,554252371,544819310,630147977,207848,ERX177286,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93407,0.93465,0.04392,0.04349,0.79742,0.79888,0.48491,0.48861,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9204,ERR202600,ERX177285,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#3.bam,bam,1867481400.0,12449876.0,SC RUN 7991 5#3,0:75 1:75,A:496520844;C:442045683;G:434406743;T:494345170;N:162960,75,75,,,496520844,442045683,434406743,494345170,162960,ERX177285,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93762,0.93824,0.03692,0.03672,0.80099,0.80178,0.48162,0.48265,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9205,ERR202599,ERX177284,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#2.bam,bam,1972001850.0,13146679.0,SC RUN 7991 5#2,0:75 1:75,A:523509540;C:467622710;G:461161908;T:519533355;N:174337,75,75,,,523509540,467622710,461161908,519533355,174337,ERX177284,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93849,0.93832,0.0458,0.04569,0.80202,0.80255,0.48921,0.48689,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9206,ERR202598,ERX177283,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#1.bam,bam,1747053750.0,11647025.0,SC RUN 7991 5#1,0:75 1:75,A:458130779;C:420533667;G:414256535;T:453983497;N:149272,75,75,,,458130779,420533667,414256535,453983497,149272,ERX177283,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93785,0.9385,0.05909,0.05935,0.80734,0.80844,0.50928,0.50801,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9207,ERR202597,ERX177282,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#14.bam,bam,1981705350.0,13211369.0,SC RUN 7991 4#14,0:75 1:75,A:490981094;C:506542368;G:496976502;T:487030001;N:175385,75,75,,,490981094,506542368,496976502,487030001,175385,ERX177282,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.94913,0.94988,0.11934,0.11735,0.79389,0.79506,0.55798,0.55984,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9208,ERR202596,ERX177281,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#13.bam,bam,1995771750.0,13305145.0,SC RUN 7991 4#13,0:75 1:75,A:536200962;C:466283583;G:457887165;T:535220047;N:179993,75,75,,,536200962,466283583,457887165,535220047,179993,ERX177281,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93868,0.93911,0.03171,0.03166,0.78188,0.7819,0.47614,0.47694,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9209,ERR202595,ERX177280,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#12.bam,bam,2261625600.0,15077504.0,SC RUN 7991 4#12,0:75 1:75,A:608829925;C:527074335;G:515433838;T:610082988;N:204514,75,75,,,608829925,527074335,515433838,610082988,204514,ERX177280,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93429,0.93602,0.03326,0.03323,0.78356,0.78415,0.4783,0.47905,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9210,ERR202594,ERX177279,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#11.bam,bam,1864306650.0,12428711.0,SC RUN 7991 4#11,0:75 1:75,A:496583931;C:439468591;G:431127617;T:496960970;N:165541,75,75,,,496583931,439468591,431127617,496960970,165541,ERX177279,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93737,0.93919,0.03019,0.03053,0.78472,0.78545,0.47617,0.47092,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9211,ERR202593,ERX177278,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#10.bam,bam,2202540150.0,14683601.0,SC RUN 7991 4#10,0:75 1:75,A:592834648;C:513214690;G:504159061;T:592128872;N:202879,75,75,,,592834648,513214690,504159061,592128872,202879,ERX177278,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.9379,0.93859,0.03096,0.03116,0.78896,0.78969,0.4757,0.47516,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9212,ERR202592,ERX177277,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#9.bam,bam,2046450450.0,13643003.0,SC RUN 7991 4#9,0:75 1:75,A:550418673;C:477579035;G:470025972;T:548246265;N:180505,75,75,,,550418673,477579035,470025972,548246265,180505,ERX177277,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93837,0.93803,0.03318,0.03292,0.78932,0.78926,0.47721,0.47833,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9213,ERR202591,ERX177276,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#8.bam,bam,2146032300.0,14306882.0,SC RUN 7991 4#8,0:75 1:75,A:574474648;C:503052481;G:495171322;T:573140749;N:193100,75,75,,,574474648,503052481,495171322,573140749,193100,ERX177276,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.93887,0.93954,0.03558,0.03582,0.7919,0.79241,0.47725,0.4787,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9214,ERR202590,ERX177275,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#7.bam,bam,2238267300.0,14921782.0,SC RUN 7991 4#7,0:75 1:75,A:597541807;C:526350654;G:517089680;T:597082511;N:202648,75,75,,,597541807,526350654,517089680,597082511,202648,ERX177275,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.93861,0.9405,0.02965,0.02985,0.79364,0.79385,0.47603,0.47625,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9215,ERR202589,ERX177274,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#6.bam,bam,1974823650.0,13165491.0,SC RUN 7991 4#6,0:75 1:75,A:525373810;C:466687779;G:459819481;T:522768904;N:173676,75,75,,,525373810,466687779,459819481,522768904,173676,ERX177274,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93806,0.93893,0.03675,0.0363,0.79511,0.79561,0.48385,0.48225,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9216,ERR202588,ERX177273,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#5.bam,bam,2048949000.0,13659660.0,SC RUN 7991 4#5,0:75 1:75,A:547633159;C:481206721;G:472394846;T:547531589;N:182685,75,75,,,547633159,481206721,472394846,547531589,182685,ERX177273,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93912,0.94025,0.03184,0.03173,0.7962,0.79717,0.47256,0.46963,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9217,ERR202587,ERX177272,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#4.bam,bam,2397136950.0,15980913.0,SC RUN 7991 4#4,0:75 1:75,A:645756664;C:560617608;G:551403590;T:639141308;N:217780,75,75,,,645756664,560617608,551403590,639141308,217780,ERX177272,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93298,0.93415,0.04429,0.04429,0.79951,0.80002,0.48808,0.4893,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9218,ERR202586,ERX177271,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#3.bam,bam,1898116050.0,12654107.0,SC RUN 7991 4#3,0:75 1:75,A:505392252;C:448615309;G:441023506;T:502913555;N:171428,75,75,,,505392252,448615309,441023506,502913555,171428,ERX177271,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93715,0.93909,0.03779,0.03782,0.80158,0.80127,0.48326,0.47856,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9219,ERR202585,ERX177270,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#2.bam,bam,1999522350.0,13330149.0,SC RUN 7991 4#2,0:75 1:75,A:531561607;C:473366722;G:467074052;T:527343528;N:176441,75,75,,,531561607,473366722,467074052,527343528,176441,ERX177270,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93778,0.93895,0.0452,0.04522,0.80206,0.80273,0.49236,0.48956,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9220,ERR202584,ERX177269,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#1.bam,bam,1775218500.0,11834790.0,SC RUN 7991 4#1,0:75 1:75,A:466226290;C:426610287;G:420392247;T:461832087;N:157589,75,75,,,466226290,426610287,420392247,461832087,157589,ERX177269,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93845,0.93837,0.05925,0.05885,0.80736,0.80773,0.50767,0.51351,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9221,ERR202583,ERX177268,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#14.bam,bam,1815365250.0,12102435.0,SC RUN 7991 3#14,0:75 1:75,A:449782753;C:463627745;G:454537452;T:447256720;N:160580,75,75,,,449782753,463627745,454537452,447256720,160580,ERX177268,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.95092,0.95048,0.11569,0.11332,0.79194,0.79249,0.56222,0.56601,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9222,ERR202582,ERX177267,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#13.bam,bam,1857239250.0,12381595.0,SC RUN 7991 3#13,0:75 1:75,A:497768819;C:435075444;G:426744145;T:497478261;N:172581,75,75,,,497768819,435075444,426744145,497478261,172581,ERX177267,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93996,0.93977,0.0316,0.03153,0.78102,0.78121,0.47463,0.47646,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9223,ERR202581,ERX177266,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#12.bam,bam,2100862650.0,14005751.0,SC RUN 7991 3#12,0:75 1:75,A:564157535;C:490878789;G:479532066;T:566093194;N:201066,75,75,,,564157535,490878789,479532066,566093194,201066,ERX177266,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93423,0.93542,0.03251,0.03237,0.78378,0.78419,0.47701,0.47611,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9224,ERR202580,ERX177265,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#11.bam,bam,1806419400.0,12042796.0,SC RUN 7991 3#11,0:75 1:75,A:480009838;C:426886329;G:418328002;T:481030772;N:164459,75,75,,,480009838,426886329,418328002,481030772,164459,ERX177265,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93961,0.94017,0.02933,0.02901,0.78695,0.78662,0.47409,0.4755,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9225,ERR202579,ERX177264,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#10.bam,bam,2048934000.0,13659560.0,SC RUN 7991 3#10,0:75 1:75,A:550192956;C:478684562;G:469641188;T:550228773;N:186521,75,75,,,550192956,478684562,469641188,550228773,186521,ERX177264,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.93834,0.93923,0.03112,0.0308,0.7881,0.78845,0.4797,0.46933,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9226,ERR202578,ERX177263,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#9.bam,bam,1894517850.0,12630119.0,SC RUN 7991 3#9,0:75 1:75,A:508328665;C:443302760;G:435794803;T:506921757;N:169865,75,75,,,508328665,443302760,435794803,506921757,169865,ERX177263,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93797,0.93943,0.03231,0.03199,0.78776,0.78855,0.47732,0.47939,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9227,ERR202577,ERX177262,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#8.bam,bam,2003464350.0,13356429.0,SC RUN 7991 3#8,0:75 1:75,A:535047038;C:470803438;G:462867310;T:534559336;N:187228,75,75,,,535047038,470803438,462867310,534559336,187228,ERX177262,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.93966,0.94089,0.03417,0.03386,0.79125,0.79212,0.47657,0.47561,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9228,ERR202576,ERX177261,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#7.bam,bam,2099698800.0,13997992.0,SC RUN 7991 3#7,0:75 1:75,A:559205479;C:495006784;G:485740628;T:559553019;N:192890,75,75,,,559205479,495006784,485740628,559553019,192890,ERX177261,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.94022,0.94119,0.02984,0.03004,0.79535,0.79582,0.47198,0.47234,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9229,ERR202575,ERX177260,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#6.bam,bam,1852378650.0,12349191.0,SC RUN 7991 3#6,0:75 1:75,A:491641193;C:438849630;G:431874930;T:489848955;N:163942,75,75,,,491641193,438849630,431874930,489848955,163942,ERX177260,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.9396,0.94022,0.03687,0.03639,0.79391,0.79508,0.48233,0.47981,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9230,ERR202574,ERX177259,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#5.bam,bam,1905950100.0,12706334.0,SC RUN 7991 3#5,0:75 1:75,A:508227014;C:448818729;G:440083593;T:508648793;N:171971,75,75,,,508227014,448818729,440083593,508648793,171971,ERX177259,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93904,0.93949,0.03053,0.0305,0.79476,0.79504,0.46881,0.4682,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9231,ERR202573,ERX177258,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#4.bam,bam,2233452750.0,14889685.0,SC RUN 7991 3#4,0:75 1:75,A:600289692;C:523649730;G:514488562;T:594820273;N:204493,75,75,,,600289692,523649730,514488562,594820273,204493,ERX177258,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93331,0.93504,0.04286,0.04288,0.79764,0.79872,0.49282,0.49263,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9232,ERR202572,ERX177257,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#3.bam,bam,1786382700.0,11909218.0,SC RUN 7991 3#3,0:75 1:75,A:474590988;C:423203792;G:415563852;T:472862277;N:161791,75,75,,,474590988,423203792,415563852,472862277,161791,ERX177257,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93801,0.93821,0.03678,0.03657,0.79993,0.80101,0.48387,0.48633,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9233,ERR202571,ERX177256,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#2.bam,bam,1857679200.0,12384528.0,SC RUN 7991 3#2,0:75 1:75,A:492800575;C:440742141;G:434414864;T:489551849;N:169771,75,75,,,492800575,440742141,434414864,489551849,169771,ERX177256,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93898,0.93885,0.04454,0.04446,0.80231,0.80148,0.48952,0.48403,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9234,ERR202570,ERX177255,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#1.bam,bam,1646603250.0,10977355.0,SC RUN 7991 3#1,0:75 1:75,A:431613267;C:396410887;G:390228076;T:428197632;N:153388,75,75,,,431613267,396410887,390228076,428197632,153388,ERX177255,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93756,0.93836,0.05979,0.05917,0.8085,0.80793,0.49892,0.50068,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9235,ERR202569,ERX177254,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#14.bam,bam,1965473100.0,13103154.0,SC RUN 7991 2#14,0:75 1:75,A:486500184;C:502825290;G:493112266;T:482886565;N:148795,75,75,,,486500184,502825290,493112266,482886565,148795,ERX177254,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.94986,0.94913,0.11956,0.11903,0.79385,0.79486,0.56081,0.55883,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9236,ERR202568,ERX177253,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#13.bam,bam,1975865550.0,13172437.0,SC RUN 7991 2#13,0:75 1:75,A:530360961;C:462060995;G:453537500;T:529752880;N:153214,75,75,,,530360961,462060995,453537500,529752880,153214,ERX177253,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93833,0.93806,0.03155,0.03213,0.78094,0.78159,0.47864,0.47791,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9237,ERR202567,ERX177252,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#12.bam,bam,2236551750.0,14910345.0,SC RUN 7991 2#12,0:75 1:75,A:601633191;C:521677746;G:509992291;T:603071872;N:176650,75,75,,,601633191,521677746,509992291,603071872,176650,ERX177252,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93418,0.93547,0.03329,0.03301,0.78419,0.78512,0.48025,0.47948,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9238,ERR202566,ERX177251,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#11.bam,bam,1853757000.0,12358380.0,SC RUN 7991 2#11,0:75 1:75,A:493376206;C:437370296;G:428928412;T:493934752;N:147334,75,75,,,493376206,437370296,428928412,493934752,147334,ERX177251,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93851,0.94009,0.0289,0.02908,0.78687,0.78762,0.47812,0.48106,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9239,ERR202565,ERX177250,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#10.bam,bam,2177067300.0,14513782.0,SC RUN 7991 2#10,0:75 1:75,A:585573930;C:507717903;G:498561550;T:585042969;N:170948,75,75,,,585573930,507717903,498561550,585042969,170948,ERX177250,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.93809,0.93844,0.03062,0.03029,0.78756,0.78806,0.46915,0.4705,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9240,ERR202564,ERX177249,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#9.bam,bam,2026219050.0,13508127.0,SC RUN 7991 2#9,0:75 1:75,A:544582418;C:473263118;G:465622655;T:542588190;N:162669,75,75,,,544582418,473263118,465622655,542588190,162669,ERX177249,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93856,0.93943,0.03227,0.0321,0.78721,0.78792,0.47402,0.47483,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9241,ERR202563,ERX177248,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#8.bam,bam,2121615750.0,14144105.0,SC RUN 7991 2#8,0:75 1:75,A:567564098;C:497718795;G:489766936;T:566404626;N:161295,75,75,,,567564098,497718795,489766936,566404626,161295,ERX177248,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.94031,0.94002,0.03568,0.03569,0.79153,0.79245,0.47888,0.48136,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9242,ERR202562,ERX177247,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#7.bam,bam,2215965300.0,14773102.0,SC RUN 7991 2#7,0:75 1:75,A:591170227;C:521550825;G:512152005;T:590918869;N:173374,75,75,,,591170227,521550825,512152005,590918869,173374,ERX177247,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.93907,0.94112,0.02964,0.02987,0.79352,0.79421,0.47506,0.4729,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9243,ERR202561,ERX177246,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#6.bam,bam,1948506750.0,12990045.0,SC RUN 7991 2#6,0:75 1:75,A:517926893;C:460908190;G:453947579;T:515573641;N:150447,75,75,,,517926893,460908190,453947579,515573641,150447,ERX177246,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93918,0.93934,0.03678,0.03652,0.79444,0.79511,0.47768,0.47922,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9244,ERR202560,ERX177245,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#5.bam,bam,2024809950.0,13498733.0,SC RUN 7991 2#5,0:75 1:75,A:540829764;C:475955080;G:467032750;T:540836722;N:155634,75,75,,,540829764,475955080,467032750,540836722,155634,ERX177245,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93817,0.93991,0.03155,0.03163,0.79801,0.79784,0.47543,0.46986,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9245,ERR202559,ERX177244,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#4.bam,bam,2366900700.0,15779338.0,SC RUN 7991 2#4,0:75 1:75,A:637085998;C:554141928;G:544686621;T:630801315;N:184838,75,75,,,637085998,554141928,544686621,630801315,184838,ERX177244,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93302,0.93387,0.04361,0.04388,0.79687,0.79776,0.48777,0.48871,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9246,ERR202558,ERX177243,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#3.bam,bam,1875931350.0,12506209.0,SC RUN 7991 2#3,0:75 1:75,A:499111540;C:443699648;G:436097536;T:496882022;N:140604,75,75,,,499111540,443699648,436097536,496882022,140604,ERX177243,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93696,0.93866,0.03685,0.03693,0.80113,0.80188,0.47663,0.4733,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9247,ERR202557,ERX177242,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#2.bam,bam,1973397150.0,13155981.0,SC RUN 7991 2#2,0:75 1:75,A:524195659;C:467576567;G:461265273;T:520206087;N:153564,75,75,,,524195659,467576567,461265273,520206087,153564,ERX177242,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93915,0.93858,0.04524,0.04551,0.80101,0.8017,0.48272,0.49051,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9248,ERR202556,ERX177241,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 2#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 2.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_2#1.bam,bam,1758848550.0,11725657.0,SC RUN 7991 2#1,0:75 1:75,A:461535576;C:423156918;G:416698923;T:457321316;N:135817,75,75,,,461535576,423156918,416698923,457321316,135817,ERX177241,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93834,0.93775,0.05982,0.05902,0.8074,0.80795,0.50959,0.51426,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9249,ERR202555,ERX177240,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#14.bam,bam,1942069800.0,12947132.0,SC RUN 7991 1#14,0:75 1:75,A:480136147;C:497356614;G:487713499;T:476662027;N:201513,75,75,,,480136147,497356614,487713499,476662027,201513,ERX177240,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.9501,0.95034,0.11971,0.11847,0.79302,0.79356,0.55788,0.56202,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9250,ERR202554,ERX177239,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#13.bam,bam,1948055850.0,12987039.0,SC RUN 7991 1#13,0:75 1:75,A:522661506;C:455839435;G:447386910;T:521960598;N:207401,75,75,,,522661506,455839435,447386910,521960598,207401,ERX177239,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93802,0.94054,0.03166,0.03183,0.77997,0.78131,0.47437,0.47601,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9251,ERR202553,ERX177238,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#12.bam,bam,2205560100.0,14703734.0,SC RUN 7991 1#12,0:75 1:75,A:592914196;C:514804425;G:503196825;T:594414796;N:229858,75,75,,,592914196,514804425,503196825,594414796,229858,ERX177238,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93385,0.93649,0.03267,0.03263,0.7839,0.7837,0.4747,0.47597,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9252,ERR202552,ERX177237,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#11.bam,bam,1824987750.0,12166585.0,SC RUN 7991 1#11,0:75 1:75,A:485416877;C:430833103;G:422476852;T:486059960;N:200958,75,75,,,485416877,430833103,422476852,486059960,200958,ERX177237,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93784,0.93896,0.02985,0.02985,0.78646,0.78766,0.47384,0.47295,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9253,ERR202551,ERX177236,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#10.bam,bam,2145935550.0,14306237.0,SC RUN 7991 1#10,0:75 1:75,A:576875126;C:500761710;G:491689871;T:576379891;N:228952,75,75,,,576875126,500761710,491689871,576379891,228952,ERX177236,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.93793,0.93901,0.03054,0.03063,0.7865,0.78685,0.47914,0.47682,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9254,ERR202550,ERX177235,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#9.bam,bam,1999944450.0,13332963.0,SC RUN 7991 1#9,0:75 1:75,A:537165535;C:467460412;G:459832104;T:535272889;N:213510,75,75,,,537165535,467460412,459832104,535272889,213510,ERX177235,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93704,0.94018,0.03276,0.0329,0.78914,0.78963,0.47486,0.47592,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9255,ERR202549,ERX177234,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#8.bam,bam,2090616750.0,13937445.0,SC RUN 7991 1#8,0:75 1:75,A:558872416;C:490793754;G:482832561;T:557892989;N:225030,75,75,,,558872416,490793754,482832561,557892989,225030,ERX177234,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.93851,0.94022,0.03506,0.03513,0.79084,0.7922,0.47947,0.48166,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9256,ERR202548,ERX177233,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#7.bam,bam,2184560550.0,14563737.0,SC RUN 7991 1#7,0:75 1:75,A:582357004;C:514560817;G:505191224;T:582221257;N:230248,75,75,,,582357004,514560817,505191224,582221257,230248,ERX177233,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.93946,0.93988,0.03001,0.03015,0.79251,0.79336,0.47745,0.47541,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9257,ERR202547,ERX177232,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#6.bam,bam,1921627800.0,12810852.0,SC RUN 7991 1#6,0:75 1:75,A:510426716;C:454871482;G:447951726;T:508179921;N:197955,75,75,,,510426716,454871482,447951726,508179921,197955,ERX177232,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93846,0.94025,0.03692,0.03707,0.79519,0.79504,0.47716,0.47912,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9258,ERR202546,ERX177231,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#5.bam,bam,1994837700.0,13298918.0,SC RUN 7991 1#5,0:75 1:75,A:532520646;C:469240216;G:460295928;T:532570948;N:209962,75,75,,,532520646,469240216,460295928,532570948,209962,ERX177231,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93817,0.94051,0.03219,0.03221,0.79569,0.79575,0.47648,0.47793,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9259,ERR202545,ERX177230,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#4.bam,bam,2332618950.0,15550793.0,SC RUN 7991 1#4,0:75 1:75,A:627409664;C:546536179;G:537142460;T:621283126;N:247521,75,75,,,627409664,546536179,537142460,621283126,247521,ERX177230,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93381,0.93598,0.04405,0.04345,0.80008,0.80085,0.49193,0.49377,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9260,ERR202544,ERX177229,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#3.bam,bam,1849740600.0,12331604.0,SC RUN 7991 1#3,0:75 1:75,A:491816126;C:437816552;G:430283631;T:489631717;N:192574,75,75,,,491816126,437816552,430283631,489631717,192574,ERX177229,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93781,0.93961,0.03704,0.03708,0.80217,0.80298,0.48297,0.48304,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9261,ERR202543,ERX177228,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#2.bam,bam,1944998400.0,12966656.0,SC RUN 7991 1#2,0:75 1:75,A:516385632;C:461212904;G:454775544;T:512418788;N:205532,75,75,,,516385632,461212904,454775544,512418788,205532,ERX177228,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93841,0.93983,0.04534,0.04566,0.80168,0.80326,0.48835,0.48992,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9262,ERR202542,ERX177227,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 1#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 1.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_1#1.bam,bam,1735432200.0,11569548.0,SC RUN 7991 1#1,0:75 1:75,A:454995728;C:417805786;G:411465742;T:450980392;N:184552,75,75,,,454995728,417805786,411465742,450980392,184552,ERX177227,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93807,0.93956,0.0595,0.05897,0.8061,0.80704,0.50386,0.5124,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9263,ERR202541,ERX177226,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#14.bam,bam,1055462850.0,7036419.0,SC RUN 7953 7#14,0:75 1:75,A:252811563;C:277854673;G:272191590;T:252457968;N:147056,75,75,,,252811563,277854673,272191590,252457968,147056,ERX177226,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.95599,0.95591,0.12195,0.12138,0.79348,0.79458,0.57144,0.58295,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9264,ERR202540,ERX177225,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#13.bam,bam,911204250.0,6074695.0,SC RUN 7953 7#13,0:75 1:75,A:237649403;C:219554294;G:215390514;T:238481103;N:128936,75,75,,,237649403,219554294,215390514,238481103,128936,ERX177225,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.94043,0.94232,0.02623,0.02589,0.78054,0.78086,0.4774,0.47761,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9265,ERR202539,ERX177224,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#12.bam,bam,1038534750.0,6923565.0,SC RUN 7953 7#12,0:75 1:75,A:271605094;C:249505914;G:243789010;T:273492800;N:141932,75,75,,,271605094,249505914,243789010,273492800,141932,ERX177224,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93747,0.9377,0.02668,0.02652,0.78356,0.78437,0.47618,0.4787,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9266,ERR202538,ERX177223,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#11.bam,bam,944456100.0,6296374.0,SC RUN 7953 7#11,0:75 1:75,A:244511261;C:229124569;G:224651140;T:246036939;N:132191,75,75,,,244511261,229124569,224651140,246036939,132191,ERX177223,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.94065,0.94183,0.02395,0.02423,0.78561,0.78638,0.47358,0.47242,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9267,ERR202537,ERX177222,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#10.bam,bam,1074651300.0,7164342.0,SC RUN 7953 7#10,0:75 1:75,A:281326783;C:257823726;G:253076353;T:282276667;N:147771,75,75,,,281326783,257823726,253076353,282276667,147771,ERX177222,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.93935,0.9398,0.02544,0.02509,0.78776,0.78845,0.47378,0.47425,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9268,ERR202536,ERX177221,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#9.bam,bam,890917050.0,5939447.0,SC RUN 7953 7#9,0:75 1:75,A:232844295;C:214251937;G:210669930;T:233031321;N:119567,75,75,,,232844295,214251937,210669930,233031321,119567,ERX177221,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93886,0.9402,0.02735,0.02736,0.78794,0.7895,0.479,0.48058,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9269,ERR202535,ERX177220,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#8.bam,bam,935739750.0,6238265.0,SC RUN 7953 7#8,0:75 1:75,A:243481237;C:225854542;G:222119749;T:244152791;N:131431,75,75,,,243481237,225854542,222119749,244152791,131431,ERX177220,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.94103,0.94251,0.03078,0.03109,0.79164,0.79107,0.48255,0.48216,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9270,ERR202534,ERX177219,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#7.bam,bam,1140721650.0,7604811.0,SC RUN 7953 7#7,0:75 1:75,A:296320815;C:275839410;G:270848118;T:297559197;N:154110,75,75,,,296320815,275839410,270848118,297559197,154110,ERX177219,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.9407,0.94335,0.02479,0.02483,0.79442,0.79537,0.47539,0.47265,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9271,ERR202533,ERX177218,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#6.bam,bam,974459100.0,6496394.0,SC RUN 7953 7#6,0:75 1:75,A:252184190;C:236811066;G:233184983;T:252146542;N:132319,75,75,,,252184190,236811066,233184983,252146542,132319,ERX177218,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.94098,0.94197,0.03224,0.03222,0.79586,0.79695,0.48214,0.47816,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9272,ERR202532,ERX177217,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#5.bam,bam,918390000.0,6122600.0,SC RUN 7953 7#5,0:75 1:75,A:238645799;C:222055292;G:217763854;T:239801569;N:123486,75,75,,,238645799,222055292,217763854,239801569,123486,ERX177217,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.94079,0.94097,0.02648,0.02639,0.7948,0.79602,0.47784,0.47672,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9273,ERR202531,ERX177216,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#4.bam,bam,1152805500.0,7685370.0,SC RUN 7953 7#4,0:75 1:75,A:300656927;C:278805192;G:274113620;T:299067667;N:162094,75,75,,,300656927,278805192,274113620,299067667,162094,ERX177216,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93371,0.93594,0.03937,0.03944,0.79876,0.80077,0.48679,0.49037,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9274,ERR202530,ERX177215,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#3.bam,bam,934624050.0,6230827.0,SC RUN 7953 7#3,0:75 1:75,A:241670195;C:227575370;G:223613170;T:241635153;N:130162,75,75,,,241670195,227575370,223613170,241635153,130162,ERX177215,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93887,0.93999,0.03234,0.03256,0.80245,0.80381,0.4859,0.4841,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9275,ERR202529,ERX177214,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#2.bam,bam,1021091100.0,6807274.0,SC RUN 7953 7#2,0:75 1:75,A:263395126;C:249159865;G:245733766;T:262659541;N:142802,75,75,,,263395126,249159865,245733766,262659541,142802,ERX177214,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.9408,0.94133,0.04226,0.04311,0.8006,0.8016,0.48913,0.49036,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9276,ERR202528,ERX177213,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7953 7#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7953 7.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7953_7#1.bam,bam,901657800.0,6011052.0,SC RUN 7953 7#1,0:75 1:75,A:229088744;C:223798421;G:220275143;T:228372208;N:123284,75,75,,,229088744,223798421,220275143,228372208,123284,ERX177213,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.9415,0.94205,0.05828,0.0576,0.80951,0.80992,0.51719,0.50904,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9295,ERR202509,ERX177194,ERS092408,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570556,SC,ArrayExpress DevelopmentalStage:High|ArrayExpress Genotype:T/LF|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 28T14:59:05Z|ENA LAST UPDATE:2018 03 08T15:36:25Z|External Id:SAMEA1570556|INSDC center name:SC|INSDC first public:2012 11 28T14:59:05Z|INSDC last update:2018 03 08T15:36:25Z|INSDC status:public|Submitter Id:High TotRNA sc 2012 02 06T13:12:19Z 1121924|common name:zebrafish|sample description:RNA seq|sample name:High TotRNA sc 2012 02 06T13:12:19Z 1121924|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 6683 3,2532386,Illumina sequencing of library 2532386  constructed from sample accession ERS092408 for study accession ERP001280.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,6683_3.bam,bam,18017920500.0,120119470.0,SC RUN 6683 3,0:75 1:75,A:3814520484;C:5110214625;G:5108998253;T:3924909956;N:59277182,75,75,,,3814520484,5110214625,5108998253,3924909956,59277182,ERX177194,ERS092408,ERA176708,SC,Wellcome Sanger Institute,2,0.92954,0.93047,0.39968,0.39928,0.89016,0.89274,0.83806,0.80901,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9297,ERR202507,ERX177192,ERS092406,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570576,SC,ArrayExpress DevelopmentalStage:UFE|ArrayExpress Genotype:T/LF|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 28T14:59:05Z|ENA LAST UPDATE:2018 03 08T15:36:29Z|External Id:SAMEA1570576|INSDC center name:SC|INSDC first public:2012 11 28T14:59:05Z|INSDC last update:2018 03 08T15:36:29Z|INSDC status:public|Submitter Id:UFE TotRNA sc 2012 02 06T13:12:15Z 1121922|common name:zebrafish|sample description:RNA seq|sample name:UFE TotRNA sc 2012 02 06T13:12:15Z 1121922|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 6683 1,2532384,Illumina sequencing of library 2532384  constructed from sample accession ERS092406 for study accession ERP001280.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,6683_1.bam,bam,17104290300.0,114028602.0,SC RUN 6683 1,0:75 1:75,A:3554740012;C:4885326720;G:4939678637;T:3662186330;N:62358601,75,75,,,3554740012,4885326720,4939678637,3662186330,62358601,ERX177192,ERS092406,ERA176708,SC,Wellcome Sanger Institute,2,0.95834,0.95438,0.39352,0.39094,0.88988,0.89152,0.85099,0.85072,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9299,ERR202505,ERX177190,ERS092404,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570545,SC,ArrayExpress DevelopmentalStage:UFE|ArrayExpress Genotype:T/LF|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 28T14:59:05Z|ENA LAST UPDATE:2018 03 08T15:36:29Z|External Id:SAMEA1570545|INSDC center name:SC|INSDC first public:2012 11 28T14:59:05Z|INSDC last update:2018 03 08T15:36:29Z|INSDC status:public|Submitter Id:UFE stan pro sc 2012 02 06T13:12:10Z 1121920|common name:zebrafish|sample description:RNA seq|sample name:UFE stan pro sc 2012 02 06T13:12:10Z 1121920|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 6317 4,2532382,Illumina sequencing of library 2532382  constructed from sample accession ERS092404 for study accession ERP001280.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,6317_4.bam,bam,7243814550.0,48292097.0,SC RUN 6317 4,0:75 1:75,A:1945156267;C:1655684218;G:1672132561;T:1961627062;N:9214442,75,75,,,1945156267,1655684218,1672132561,1961627062,9214442,ERX177190,ERS092404,ERA176708,SC,Wellcome Sanger Institute,2,0.91351,0.90902,0.03672,0.03724,0.81274,0.81266,0.47681,0.47803,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9300,ERR202504,ERX177189,ERS092095,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570558,SC,ArrayExpress DevelopmentalStage:high|ArrayExpress Genotype:SAT/WIK|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 28T14:59:05Z|ENA LAST UPDATE:2018 03 08T15:36:15Z|External Id:SAMEA1570558|INSDC center name:SC|INSDC first public:2012 11 28T14:59:05Z|INSDC last update:2018 03 08T15:36:15Z|INSDC status:public|Submitter Id:SAT c sc 2012 02 06T13:05:46Z 998061|common name:zebrafish|sample description:RNA seq|sample name:SAT c sc 2012 02 06T13:05:46Z 998061|scientific name:Danio rerio|strain:SAT,,,,,,,,,1,SC EXP 5633 1,1523491,Illumina sequencing of library 1523491  constructed from sample accession ERS092095 for study accession ERP001280.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP001280,Illumina Genome Analyzer II paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,5633_1.bam,bam,2995530876.0,27736397.0,SC RUN 5633 1,0:54 1:54,A:800897732;C:672517043;G:661661999;T:809239074;N:51215028,54,54,,,800897732,672517043,661661999,809239074,51215028,ERX177189,ERS092095,ERA176708,SC,Wellcome Sanger Institute,2,0.84389,0.64961,0.07278,0.05818,0.75394,0.792,0.47722,0.48977,54,54,B,B,biological fallback assumption,illumina,early_illumina,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9307,ERR202497,ERX177182,ERS092090,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570557,SC,ArrayExpress DevelopmentalStage:high|ArrayExpress Genotype:WIK/SAT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 28T14:59:05Z|ENA LAST UPDATE:2018 03 08T15:36:13Z|External Id:SAMEA1570557|INSDC center name:SC|INSDC first public:2012 11 28T14:59:05Z|INSDC last update:2018 03 08T15:36:13Z|INSDC status:public|Submitter Id:WIK c sc 2012 02 06T13:05:40Z 998056|common name:zebrafish|sample description:RNA seq|sample name:WIK c sc 2012 02 06T13:05:40Z 998056|scientific name:Danio rerio|strain:WIK,,,,,,,,,1,SC EXP 5540 3,1392792,Illumina sequencing of library 1392792  constructed from sample accession ERS092090 for study accession ERP001280.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina Genome Analyzer II,,ERP001280,Illumina Genome Analyzer II paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,5540_3.bam,bam,4092330492.0,37891949.0,SC RUN 5540 3,0:54 1:54,A:1154970385;C:902039847;G:894638019;T:1132975251;N:7706990,54,54,,,1154970385,902039847,894638019,1132975251,7706990,ERX177182,ERS092090,ERA176708,SC,Wellcome Sanger Institute,2,0.91228,0.91007,0.08976,0.09052,0.73245,0.73503,0.4923,0.48265,54,54,B,B,biological fallback assumption,illumina,early_illumina,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9311,ERR202625,ERX177310,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#14.bam,bam,1984113600.0,13227424.0,SC RUN 7991 6#14,0:75 1:75,A:491500408;C:507232160;G:497626398;T:487624024;N:130610,75,75,,,491500408,507232160,497626398,487624024,130610,ERX177310,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.94874,0.94963,0.11908,0.11864,0.79356,0.79421,0.55987,0.56922,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9312,ERR202624,ERX177309,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#13.bam,bam,1997486850.0,13316579.0,SC RUN 7991 6#13,0:75 1:75,A:536534009;C:466786299;G:458421854;T:535613331;N:131357,75,75,,,536534009,466786299,458421854,535613331,131357,ERX177309,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93903,0.93908,0.03236,0.03221,0.78145,0.78121,0.47379,0.47622,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9313,ERR202623,ERX177308,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#12.bam,bam,2263633200.0,15090888.0,SC RUN 7991 6#12,0:75 1:75,A:609153029;C:527740644;G:516017461;T:610571339;N:150727,75,75,,,609153029,527740644,516017461,610571339,150727,ERX177308,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93356,0.93524,0.03369,0.03344,0.78512,0.7847,0.47804,0.47662,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9314,ERR202622,ERX177307,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#11.bam,bam,1867962000.0,12453080.0,SC RUN 7991 6#11,0:75 1:75,A:497391621;C:440433553;G:432136543;T:497880142;N:120141,75,75,,,497391621,440433553,432136543,497880142,120141,ERX177307,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93795,0.93995,0.02951,0.02939,0.78577,0.78705,0.47501,0.47778,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9315,ERR202621,ERX177306,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#10.bam,bam,2204836050.0,14698907.0,SC RUN 7991 6#10,0:75 1:75,A:593288769;C:513946858;G:504747491;T:592707522;N:145410,75,75,,,593288769,513946858,504747491,592707522,145410,ERX177306,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.93748,0.93993,0.0315,0.03181,0.78658,0.78691,0.47644,0.47558,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9316,ERR202620,ERX177305,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#9.bam,bam,2047785900.0,13651906.0,SC RUN 7991 6#9,0:75 1:75,A:550569586;C:478116934;G:470404940;T:548563677;N:130763,75,75,,,550569586,478116934,470404940,548563677,130763,ERX177305,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93708,0.93868,0.0328,0.03297,0.78804,0.78969,0.47999,0.4759,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9317,ERR202619,ERX177304,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#8.bam,bam,2150198100.0,14334654.0,SC RUN 7991 6#8,0:75 1:75,A:575397652;C:504220985;G:496254315;T:574183094;N:142054,75,75,,,575397652,504220985,496254315,574183094,142054,ERX177304,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.9377,0.94047,0.03471,0.035,0.79168,0.79285,0.47604,0.47976,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9318,ERR202618,ERX177303,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#7.bam,bam,2241775950.0,14945173.0,SC RUN 7991 6#7,0:75 1:75,A:598208704;C:527419812;G:518084980;T:597913326;N:149128,75,75,,,598208704,527419812,518084980,597913326,149128,ERX177303,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.9389,0.94042,0.02979,0.02995,0.7936,0.79411,0.47088,0.47104,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9319,ERR202617,ERX177302,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#6.bam,bam,1976823450.0,13178823.0,SC RUN 7991 6#6,0:75 1:75,A:525710549;C:467339531;G:460398280;T:523248235;N:126855,75,75,,,525710549,467339531,460398280,523248235,126855,ERX177302,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93878,0.93986,0.03683,0.03674,0.79506,0.79553,0.4815,0.48169,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9320,ERR202616,ERX177301,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 6#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 6.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_6#5.bam,bam,2050597050.0,13670647.0,SC RUN 7991 6#5,0:75 1:75,A:547870606;C:481863889;G:472859360;T:547873928;N:129267,75,75,,,547870606,481863889,472859360,547873928,129267,ERX177301,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93804,0.93965,0.0317,0.03174,0.79598,0.79596,0.47427,0.47509,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures