rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
38,DRR408248,DRX393854,DRS407179,DRP012042,PRJDB14275,Zebrafish EN/ENCDC RNA seq,DRP012042,Transcriptome Analysis,A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line  TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs  and isolated GFP+ ENs and dsRed+ ENCDCs.  Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.,,,zebrafish 5 day DsRed positive enteric neural crest derived cells replicate 3,zebrafish ENCDC replicate 3,SAMD00529468,,sample name:zebrafish ENCDC replicate 3|biological replicate:enteric neural crest derived cells 3|strain:Tgsox10:cre; EF3alpha:loxP gfp loxP dsred,,,,,,,,,NextSeq 550 paired end sequencing of SAMD00529468,DRX393854,190326ENvsNC N706 5day;NeuralCrestDerivedCell;rep3,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,NextSeq 550,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP012042,NextSeq 550 paired end sequencing of SAMD00529468,,,,3803721121.0,24526633.0,DRR408248,0:77.54 1:77.54,A:999106107;C:897663781;G:921501114;T:979486853;N:5963266,77,77,,,999106107,897663781,921501114,979486853,5963266,DRX393854,DRS407179,DRA014886,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Japan,2024-09-22,Undetermined,Larval,Brain,Nervous System
39,DRR408247,DRX393853,DRS407178,DRP012042,PRJDB14275,Zebrafish EN/ENCDC RNA seq,DRP012042,Transcriptome Analysis,A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line  TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs  and isolated GFP+ ENs and dsRed+ ENCDCs.  Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.,,,zebrafish 5 day DsRed positive enteric neural crest derived cells replicate 2,zebrafish ENCDC replicate 2,SAMD00529467,,sample name:zebrafish ENCDC replicate 2|biological replicate:enteric neural crest derived cells 2|strain:Tgsox10:cre; EF2alpha:loxP gfp loxP dsred,,,,,,,,,NextSeq 550 paired end sequencing of SAMD00529467,DRX393853,190326ENvsNC N705 5day;NeuralCrestDerivedCell;rep2,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,NextSeq 550,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP012042,NextSeq 550 paired end sequencing of SAMD00529467,,,,3436798274.0,22156202.0,DRR408247,0:77.56 1:77.56,A:900848174;C:812031426;G:832960423;T:885671203;N:5287048,77,77,,,900848174,812031426,832960423,885671203,5287048,DRX393853,DRS407178,DRA014886,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Japan,2024-09-22,Undetermined,Larval,Brain,Nervous System
40,DRR408246,DRX393852,DRS407177,DRP012042,PRJDB14275,Zebrafish EN/ENCDC RNA seq,DRP012042,Transcriptome Analysis,A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line  TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs  and isolated GFP+ ENs and dsRed+ ENCDCs.  Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.,,,zebrafish 5 day DsRed positive enteric neural crest derived cells replicate 1,zebrafish ENCDC replicate 1,SAMD00529466,,sample name:zebrafish ENCDC replicate 1|biological replicate:enteric neural crest derived cells 1|strain:Tgsox10:cre; EF1alpha:loxP gfp loxP dsred,,,,,,,,,NextSeq 550 paired end sequencing of SAMD00529466,DRX393852,190326ENvsNC N704 5day;NeuralCrestDerivedCell;rep1,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,NextSeq 550,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP012042,NextSeq 550 paired end sequencing of SAMD00529466,,,,3582073512.0,23135170.0,DRR408246,0:77.41 1:77.42,A:943152815;C:841972211;G:863627245;T:927361159;N:5960082,77,77,,,943152815,841972211,863627245,927361159,5960082,DRX393852,DRS407177,DRA014886,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Japan,2024-09-22,Undetermined,Larval,Brain,Nervous System
41,DRR408245,DRX393851,DRS407176,DRP012042,PRJDB14275,Zebrafish EN/ENCDC RNA seq,DRP012042,Transcriptome Analysis,A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line  TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs  and isolated GFP+ ENs and dsRed+ ENCDCs.  Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.,,,zebrafish 5 day GFP positive enteric neurons replicate 3,zebrafish EN replicate 3,SAMD00529465,,sample name:zebrafish EN replicate 3|biological replicate:eneteric neurons 3|strain:TgSAGFFLF219B; uas:gfp,,,,,,,,,NextSeq 550 paired end sequencing of SAMD00529465,DRX393851,190326ENvsNC N703 5day;EntericNeuron;rep3,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,NextSeq 550,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP012042,NextSeq 550 paired end sequencing of SAMD00529465,,,,3729799291.0,23985772.0,DRR408245,0:77.75 1:77.75,A:978752781;C:879988139;G:903976580;T:962122970;N:4958821,77,77,,,978752781,879988139,903976580,962122970,4958821,DRX393851,DRS407176,DRA014886,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Japan,2024-09-22,Undetermined,Larval,Undetermined,Undetermined
42,DRR408244,DRX393850,DRS407175,DRP012042,PRJDB14275,Zebrafish EN/ENCDC RNA seq,DRP012042,Transcriptome Analysis,A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line  TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs  and isolated GFP+ ENs and dsRed+ ENCDCs.  Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.,,,zebrafish 5 day GFP positive enteric neurons replicate 2,zebrafish EN replicate 2,SAMD00529464,,sample name:zebrafish EN replicate 2|biological replicate:eneteric neurons 2|strain:TgSAGFFLF218B; uas:gfp,,,,,,,,,NextSeq 550 paired end sequencing of SAMD00529464,DRX393850,190326ENvsNC N702 5day;EntericNeuron;rep2,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,NextSeq 550,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP012042,NextSeq 550 paired end sequencing of SAMD00529464,,,,3315994810.0,21477755.0,DRR408244,0:77.19 1:77.20,A:873970427;C:778042505;G:798459853;T:859611841;N:5910184,77,77,,,873970427,778042505,798459853,859611841,5910184,DRX393850,DRS407175,DRA014886,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Japan,2024-09-22,Undetermined,Larval,Undetermined,Undetermined
43,DRR408243,DRX393849,DRS407174,DRP012042,PRJDB14275,Zebrafish EN/ENCDC RNA seq,DRP012042,Transcriptome Analysis,A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line  TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs  and isolated GFP+ ENs and dsRed+ ENCDCs.  Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.,,,zebrafish 5 day GFP positive enteric neurons replicate 1,zebrafish EN replicate 1,SAMD00529463,,sample name:zebrafish EN replicate 1|biological replicate:eneteric neurons 1|strain:TgSAGFFLF217B; uas:gfp,,,,,,,,,NextSeq 550 paired end sequencing of SAMD00529463,DRX393849,190326ENvsNC N701 5day;EntericNeuron;rep1,1,1,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,ILLUMINA,NextSeq 550,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP012042,NextSeq 550 paired end sequencing of SAMD00529463,,,,2999501518.0,19455440.0,DRR408243,0:77.08 1:77.09,A:788053541;C:705895776;G:724185148;T:775760738;N:5606315,77,77,,,788053541,705895776,724185148,775760738,5606315,DRX393849,DRS407174,DRA014886,"NIBB|NIBB core research facilities, National Institute for Basic Biology",University of Hyogo,,,,,,,,,,,,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Japan,2024-09-22,Undetermined,Larval,Undetermined,Undetermined
62,DRR032762,DRX029568,DRS049967,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 3,SAMD00028159,,sample name:Dr prime5 6 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028159,DRX029568,Dr prime5 6 3,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028159,,,,3903332800.0,39033328.0,DRR032762,0:100 1:0,A:1050045822;C:908538410;G:900588661;T:1044116537;N:43370,100,0,,,1050045822,908538410,900588661,1044116537,43370,DRX029568,DRS049967,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92761,,0.07976,,0.69126,,0.46568,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
63,DRR032761,DRX029567,DRS049966,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 2,SAMD00028158,,sample name:Dr prime5 6 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028158,DRX029567,Dr prime5 6 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028158,,,,3678549700.0,36785497.0,DRR032761,0:100 1:0,A:986526644;C:857762765;G:853417738;T:980801764;N:40789,100,0,,,986526644,857762765,853417738,980801764,40789,DRX029567,DRS049966,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92689,,0.07872,,0.6928,,0.46577,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
64,DRR032760,DRX029566,DRS049965,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime5 6 1,SAMD00028157,,sample name:Dr prime5 6 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028157,DRX029566,Dr prime5 6 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028157,,,,3863129500.0,38631295.0,DRR032760,0:100 1:0,A:1035240477;C:901625010;G:895370149;T:1030851937;N:41927,100,0,,,1035240477,901625010,895370149,1030851937,41927,DRX029566,DRS049965,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92337,,0.07522,,0.69315,,0.46516,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
65,DRR032759,DRX029565,DRS049964,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime25 2,SAMD00028156,,sample name:Dr prime25 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028156,DRX029565,Dr prime25 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028156,,,,3750136100.0,37501361.0,DRR032759,0:100 1:0,A:1013528040;C:866734984;G:862431819;T:1007403208;N:38049,100,0,,,1013528040,866734984,862431819,1007403208,38049,DRX029565,DRS049964,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92019,,0.09079,,0.68304,,0.47083,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
66,DRR032758,DRX029564,DRS049963,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr prime25 1,SAMD00028155,,sample name:Dr prime25 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028155,DRX029564,Dr prime25 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028155,,,,3544862700.0,35448627.0,DRR032758,0:100 1:0,A:952135895;C:825841753;G:821757889;T:945087927;N:39236,100,0,,,952135895,825841753,821757889,945087927,39236,DRX029564,DRS049963,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92229,,0.08344,,0.68525,,0.466,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
67,DRR032757,DRX029563,DRS049962,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 97 individuals,Dr bud 2,SAMD00028154,,sample name:Dr bud 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028154,DRX029563,Dr bud 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028154,,,,4104778200.0,41047782.0,DRR032757,0:100 1:0,A:1116316188;C:944738800;G:936257056;T:1107423486;N:42670,100,0,,,1116316188,944738800,936257056,1107423486,42670,DRX029563,DRS049962,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92945,,0.10493,,0.73407,,0.47824,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
68,DRR032756,DRX029562,DRS049961,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr bud 1,SAMD00028153,,sample name:Dr bud 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028153,DRX029562,Dr bud 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028153,,,,4540291000.0,45402910.0,DRR032756,0:100 1:0,A:1237914068;C:1042346110;G:1033172731;T:1226799791;N:58300,100,0,,,1237914068,1042346110,1033172731,1226799791,58300,DRX029562,DRS049961,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92628,,0.10478,,0.7391,,0.46461,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Undetermined,Embryo,Whole Organism,All anatomical structures
95,DRR050167,DRX045209,DRS025834,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 3,SAMD00044057,,sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044057,DRX045209,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044057,,,,371748120.0,3469843.0,DRR050167,0:107.14,A:107190409;C:79475572;G:83520360;T:101561779;N:0,107,,,,107190409,79475572,83520360,101561779,0,DRX045209,DRS025834,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.81026,,0.26715,,0.86953,,0.52321,,51,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
96,DRR050166,DRX045208,DRS025833,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 2,SAMD00044056,,sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044056,DRX045208,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044056,,,,425549011.0,3275261.0,DRR050166,0:129.93,A:126640704;C:86415371;G:90822163;T:121670773;N:0,129,,,,126640704,86415371,90822163,121670773,0,DRX045208,DRS025833,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80223,,0.31429,,0.85861,,0.5272,,57,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
97,DRR050165,DRX045207,DRS025832,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing ES1 and EGFP,ES1 1,SAMD00044055,,sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044055,DRX045207,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044055,,,,584599765.0,3941083.0,DRR050165,0:148.33,A:164329030;C:129885620;G:136727379;T:153657736;N:0,148,,,,164329030,129885620,136727379,153657736,0,DRX045207,DRS025832,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.83769,,0.25395,,0.83116,,0.52784,,185,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
98,DRR050164,DRX045206,DRS025831,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 3,SAMD00044054,,sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044054,DRX045206,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044054,,,,343014114.0,3827762.0,DRR050164,0:89.61,A:99421434;C:73070267;G:77738821;T:92783592;N:0,89,,,,99421434,73070267,77738821,92783592,0,DRX045206,DRS025831,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.78953,,0.25529,,0.87367,,0.52148,,24,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
99,DRR050163,DRX045205,DRS025830,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 2,SAMD00044053,,sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044053,DRX045205,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044053,,,,533069427.0,3824140.0,DRR050163,0:139.40,A:152608173;C:113928273;G:120051739;T:146481242;N:0,139,,,,152608173,113928273,120051739,146481242,0,DRX045205,DRS025830,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.80412,,0.26768,,0.85338,,0.52255,,245,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
100,DRR050162,DRX045204,DRS025829,DRP003043,PRJDB4416,Transcriptome analysis in ES1 expressing rods of zebrafish,DRP003043,Transcriptome Analysis,Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.,,,Zebrafish rods expressing EGFP,EGFP 1,SAMD00044052,,sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod,,,,,,,,,Ion Torrent PGM sequencing of SAMD00044052,DRX045204,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003043,Ion Torrent PGM sequencing of SAMD00044052,,,,478262965.0,4224064.0,DRR050162,0:113.22,A:136348264;C:104872341;G:113114502;T:123927858;N:0,113,,,,136348264,104872341,113114502,123927858,0,DRX045204,DRS025829,DRA004229,"OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ.",Osaka university,1,0.86947,,0.29839,,0.83317,,0.51453,,80,,B,,usable mapping rate,ion_torrent,ion_torrent,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,Japan,2016-03-09,Undetermined,Undetermined,Fin,Surface Structure
147,DRR051067,DRX045959,DRS057267,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,These cells are from the same fish as h62A GFP plus Tel,GFP  cells from telencephalon of hspGFF62A;UAS:GFP transgenic zebrafish,SAMD00044994,,sample name:h62A GFP minus Tel|tissue type:brain|genotype:hspGFF62A;UAS:GFP,,,,,,,,,Illumina HiSeq 2500 paired end sequencing of SAMD00044994,DRX045959,h62A GFP minus Tel,1,cDNA synthesis : clontech SMARTer v3  > Library prep : Illumina Nextera XT DNA Library Preparation Kits,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 2500 paired end sequencing of SAMD00044994,,,,17913873600.0,89569368.0,DRR051067,0:100 1:100,A:5009629866;C:3957379257;G:3797879751;T:5144366288;N:4618438,100,100,,,5009629866,3957379257,3797879751,5144366288,4618438,DRX045959,DRS057267,DRA004277,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),2,0.89075,0.89087,0.23044,0.23295,0.69493,0.69769,0.5366,0.54852,100,100,B,B,biological fallback assumption,illumina,hiseq_era,full_length,cdna_unspecified,nextera,bulk,unknown,unknown,,Japan,2018-01-06,Undetermined,Undetermined,Brain,Nervous System
151,DRR051063,DRX045955,DRS057266,DRP003977,PRJDB4470,Gene expression analysis of the zebrafish brain,DRP003977,Other,Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.,,,These cells are from the same fish as 120A GFP plus Tel,GFP  cells from telencephalon of SAGFFLF120A;UAS:GFP transgenic zebrafish,SAMD00044987,,sample name:120A GFP minus Tel|tissue type:brain|genotype:SAGFFLF120A;UAS:GFP,,,,,,,,,Illumina HiSeq 2500 paired end sequencing of SAMD00044987,DRX045955,120A GFP minus Tel,1,cDNA synthesis : clontech SMARTer v2  > Library prep : Illumina TrunSeq DNA Sample Preparation Kits,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003977,Illumina HiSeq 2500 paired end sequencing of SAMD00044987,,,,15411400120.0,76294060.0,DRR051063,0:101 1:101,A:4583085286;C:3082552426;G:3134669086;T:4606055524;N:5037798,101,101,,,4583085286,3082552426,3134669086,4606055524,5037798,DRX045955,DRS057266,DRA004273,NIG|National Institute of Genetics (Japan),National Institute of Genetics (Japan),2,0.89184,0.8842,0.30246,0.30334,0.69232,0.705,0.52824,0.51492,101,101,B,B,biological fallback assumption,illumina,hiseq_era,full_length,cdna_unspecified,smarter,bulk,unknown,unknown,,Japan,2018-01-06,Undetermined,Undetermined,Brain,Nervous System
280,DRR161311,DRX151936,DRS095335,DRP005084,PRJDB7735,Gene expression profile in adult zebrafish liver,DRP005084,Transcriptome Analysis,Increasing use of zebrafish in toxicological researches requires knowledge on gene expression profile in liver that play a major role in xenobiotic metabolism. Our research provide a basal gene expression profile in adult zebrafish liver.,,,,Transcriptome of female Danio rerio liver,SAMD00153247,,sample name:transcriptome zebrafish female|sex:female|strain:RIKEN WT|tissue:liver,,,,,,,,,NextSeq 500 paired end sequencing of SAMD00153247,DRX151936,f,1,1,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>152</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>77</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP005084,NextSeq 500 paired end sequencing of SAMD00153247,,,,2338564937.0,15498367.0,DRR161311,0:75.45 1:75.44,A:613899755;C:541756858;G:548366901;T:633083422;N:1458001,75,75,,,613899755,541756858,548366901,633083422,1458001,DRX151936,DRS095335,DRA007652,"OBICHIKU|Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine","Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine",2,0.95814,0.96362,0.05394,0.04517,0.77932,0.7834,0.37385,0.37264,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-05-20,Undetermined,Adult,Liver,Liver and Biliary System
281,DRR161310,DRX151935,DRS095334,DRP005084,PRJDB7735,Gene expression profile in adult zebrafish liver,DRP005084,Transcriptome Analysis,Increasing use of zebrafish in toxicological researches requires knowledge on gene expression profile in liver that play a major role in xenobiotic metabolism. Our research provide a basal gene expression profile in adult zebrafish liver.,,,,Transcriptome of male Danio rerio liver,SAMD00153246,,sample name:transcriptome zebrafish male|sex:male|strain:RIKEN WT|tissue:liver,,,,,,,,,NextSeq 500 paired end sequencing of SAMD00153246,DRX151935,m,1,1,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>152</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>77</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP005084,NextSeq 500 paired end sequencing of SAMD00153246,,,,2506978527.0,16611154.0,DRR161310,0:75.48 1:75.44,A:672321355;C:568289588;G:569411670;T:695545626;N:1410288,75,75,,,672321355,568289588,569411670,695545626,1410288,DRX151935,DRS095334,DRA007652,"OBICHIKU|Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine","Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine",2,0.94746,0.95115,0.07899,0.06363,0.80837,0.8115,0.52008,0.58743,76,76,B,B,biological fallback assumption,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2019-05-20,Undetermined,Adult,Liver,Liver and Biliary System
2319,ERR1289947,ERX1361553,ERS954843,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647694,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647694|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:ATH5 2 sc 2454965|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 2 sc 2454965|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#12,15249493,Illumina sequencing of library 15249493  constructed from sample accession ERS954843 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence TAGGCATGAGAGTAGA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#12.cram,cram,2492206600.0,12461033.0,SC RUN 18222 2#12,0:100 1:100,A:661236051;C:588399772;G:571478215;T:671080581;N:11981,100,100,,,661236051,588399772,571478215,671080581,11981,ERX1361553,ERS954843,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94054,0.94077,0.10025,0.10255,0.75779,0.76019,0.4807,0.47966,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2320,ERR1289946,ERX1361552,ERS954842,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647693,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647693|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:WT ctrl sc 2454964|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:WT ctrl sc 2454964|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#11,15249492,Illumina sequencing of library 15249492  constructed from sample accession ERS954842 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence TAGGCATGTATCCTCT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#11.cram,cram,2748114600.0,13740573.0,SC RUN 18222 2#11,0:100 1:100,A:747132237;C:630918171;G:613637334;T:756413030;N:13828,100,100,,,747132237,630918171,613637334,756413030,13828,ERX1361552,ERS954842,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.91201,0.911,0.09071,0.09156,0.88994,0.88988,0.47118,0.49948,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2321,ERR1289945,ERX1361551,ERS954841,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647692,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:59Z|External Id:SAMEA3647692|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:59Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP3 sc 2454963|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP3 sc 2454963|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#10,15249491,Illumina sequencing of library 15249491  constructed from sample accession ERS954841 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence TAGGCATGCTCTCTAT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#10.cram,cram,3366968000.0,16834840.0,SC RUN 18222 2#10,0:100 1:100,A:881918684;C:806052916;G:790157920;T:888821188;N:17292,100,100,,,881918684,806052916,790157920,888821188,17292,ERX1361551,ERS954841,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94171,0.94098,0.0849,0.08607,0.74862,0.75024,0.50963,0.50955,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2322,ERR1289944,ERX1361550,ERS954840,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647691,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647691|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP2 sc 2454962|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP2 sc 2454962|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#9,15249490,Illumina sequencing of library 15249490  constructed from sample accession ERS954840 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence TAGGCATGTAGATCGC.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#9.cram,cram,3222261000.0,16111305.0,SC RUN 18222 2#9,0:100 1:100,A:819997366;C:795302699;G:777099203;T:829845734;N:15998,100,100,,,819997366,795302699,777099203,829845734,15998,ERX1361550,ERS954840,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94529,0.94495,0.0603,0.06143,0.76157,0.76238,0.48847,0.4882,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2323,ERR1289943,ERX1361549,ERS954839,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647690,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647690|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 high sc 2454961|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 high sc 2454961|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#8,15249489,Illumina sequencing of library 15249489  constructed from sample accession ERS954839 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTCTAAGCCT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#8.cram,cram,3834749800.0,19173749.0,SC RUN 18222 2#8,0:100 1:100,A:992673645;C:929008642;G:906766397;T:1006281701;N:19415,100,100,,,992673645,929008642,906766397,1006281701,19415,ERX1361549,ERS954839,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94351,0.94297,0.08055,0.08157,0.72853,0.73095,0.52148,0.51755,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2324,ERR1289942,ERX1361548,ERS954838,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647689,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647689|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 low sc 2454960|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 low sc 2454960|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#7,15249488,Illumina sequencing of library 15249488  constructed from sample accession ERS954838 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTAAGGAGTA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#7.cram,cram,1076581000.0,5382905.0,SC RUN 18222 2#7,0:100 1:100,A:285946062;C:254142940;G:242866633;T:293619980;N:5385,100,100,,,285946062,254142940,242866633,293619980,5385,ERX1361548,ERS954838,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.89818,0.89819,0.1022,0.10292,0.89919,0.89852,0.51448,0.51223,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2325,ERR1289941,ERX1361547,ERS954837,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647688,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647688|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP2 sc 2454959|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP2 sc 2454959|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#6,15249487,Illumina sequencing of library 15249487  constructed from sample accession ERS954837 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTACTGCATA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#6.cram,cram,3172834800.0,15864174.0,SC RUN 18222 2#6,0:100 1:100,A:841262183;C:748974758;G:730474017;T:852107947;N:15895,100,100,,,841262183,748974758,730474017,852107947,15895,ERX1361547,ERS954837,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.93515,0.93517,0.10079,0.10267,0.73403,0.73511,0.49831,0.47169,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2326,ERR1289940,ERX1361546,ERS954836,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647687,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647687|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:ATH5 1 sc 2454958|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 1 sc 2454958|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#5,15249486,Illumina sequencing of library 15249486  constructed from sample accession ERS954836 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#5.cram,cram,1188728400.0,5943642.0,SC RUN 18222 2#5,0:100 1:100,A:322290258;C:273659598;G:266021599;T:326751009;N:5936,100,100,,,322290258,273659598,266021599,326751009,5936,ERX1361546,ERS954836,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.92438,0.92391,0.12338,0.1251,0.76288,0.76479,0.48734,0.47777,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2327,ERR1289939,ERX1361545,ERS954835,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647686,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647686|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP1 sc 2454957|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP1 sc 2454957|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#4,15249485,Illumina sequencing of library 15249485  constructed from sample accession ERS954835 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTAGAGTAGA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#4.cram,cram,2335470400.0,11677352.0,SC RUN 18222 2#4,0:100 1:100,A:611730664;C:560095252;G:541373953;T:622259122;N:11409,100,100,,,611730664,560095252,541373953,622259122,11409,ERX1361545,ERS954835,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.93481,0.93465,0.10573,0.10811,0.77135,0.77303,0.50016,0.50137,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2328,ERR1289938,ERX1361544,ERS954834,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647685,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647685|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP1 sc 2454956|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP1 sc 2454956|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#3,15249484,Illumina sequencing of library 15249484  constructed from sample accession ERS954834 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTTATCCTCT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#3.cram,cram,2932765000.0,14663825.0,SC RUN 18222 2#3,0:100 1:100,A:762543647;C:708033363;G:692599413;T:769573475;N:15102,100,100,,,762543647,708033363,692599413,769573475,15102,ERX1361544,ERS954834,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94442,0.94374,0.07322,0.07439,0.74383,0.74531,0.50604,0.51608,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2329,ERR1289937,ERX1361543,ERS954833,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647684,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:15Z|External Id:SAMEA3647684|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:15Z|INSDC status:public|Submitter Id:RX2 GFP1 sc 2454955|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP1 sc 2454955|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#2,15249483,Illumina sequencing of library 15249483  constructed from sample accession ERS954833 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTCTCTCTAT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#2.cram,cram,2432398000.0,12161990.0,SC RUN 18222 2#2,0:100 1:100,A:624543123;C:594774023;G:581130641;T:631937939;N:12274,100,100,,,624543123,594774023,581130641,631937939,12274,ERX1361543,ERS954833,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94225,0.94103,0.08221,0.0823,0.79289,0.79383,0.51106,0.5129,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2330,ERR1289936,ERX1361542,ERS954832,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647683,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647683|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ctrl noGFP sc 2454954|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ctrl noGFP sc 2454954|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 2#1,15249482,Illumina sequencing of library 15249482  constructed from sample accession ERS954832 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 2.  This submission includes reads tagged with the sequence GGACTCCTTAGATCGC.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_2#1.cram,cram,361900800.0,1809504.0,SC RUN 18222 2#1,0:100 1:100,A:84553945;C:97259075;G:92615955;T:87470072;N:1753,100,100,,,84553945,97259075,92615955,87470072,1753,ERX1361542,ERS954832,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94897,0.95014,0.07743,0.07772,0.71969,0.72058,0.43784,0.44067,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2331,ERR1289935,ERX1361541,ERS954843,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647694,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647694|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:ATH5 2 sc 2454965|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 2 sc 2454965|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#12,15249493,Illumina sequencing of library 15249493  constructed from sample accession ERS954843 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence TAGGCATGAGAGTAGA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#12.cram,cram,2487554200.0,12437771.0,SC RUN 18222 1#12,0:100 1:100,A:660028585;C:587257902;G:570415230;T:669842822;N:9661,100,100,,,660028585,587257902,570415230,669842822,9661,ERX1361541,ERS954843,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94059,0.9397,0.09914,0.1011,0.75597,0.75862,0.48558,0.48548,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2332,ERR1289934,ERX1361540,ERS954842,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647693,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647693|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:WT ctrl sc 2454964|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:WT ctrl sc 2454964|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#11,15249492,Illumina sequencing of library 15249492  constructed from sample accession ERS954842 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence TAGGCATGTATCCTCT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#11.cram,cram,2740851200.0,13704256.0,SC RUN 18222 1#11,0:100 1:100,A:745054545;C:629082779;G:612051041;T:754652050;N:10785,100,100,,,745054545,629082779,612051041,754652050,10785,ERX1361540,ERS954842,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.91349,0.91229,0.09216,0.09351,0.88962,0.89043,0.48978,0.5028,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2333,ERR1289933,ERX1361539,ERS954841,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647692,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:59Z|External Id:SAMEA3647692|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:59Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP3 sc 2454963|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP3 sc 2454963|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#10,15249491,Illumina sequencing of library 15249491  constructed from sample accession ERS954841 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence TAGGCATGCTCTCTAT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#10.cram,cram,3357950400.0,16789752.0,SC RUN 18222 1#10,0:100 1:100,A:879637755;C:803810252;G:787961249;T:886528291;N:12853,100,100,,,879637755,803810252,787961249,886528291,12853,ERX1361539,ERS954841,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94064,0.94017,0.08377,0.08517,0.74909,0.75136,0.50723,0.50903,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2334,ERR1289932,ERX1361538,ERS954840,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647691,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647691|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP2 sc 2454962|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP2 sc 2454962|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#9,15249490,Illumina sequencing of library 15249490  constructed from sample accession ERS954840 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence TAGGCATGTAGATCGC.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#9.cram,cram,3206581200.0,16032906.0,SC RUN 18222 1#9,0:100 1:100,A:816111545;C:791236086;G:773298814;T:825922398;N:12357,100,100,,,816111545,791236086,773298814,825922398,12357,ERX1361538,ERS954840,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94549,0.94564,0.06037,0.06105,0.76043,0.76171,0.48313,0.49555,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2335,ERR1289931,ERX1361537,ERS954839,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647690,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647690|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 high sc 2454961|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 high sc 2454961|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#8,15249489,Illumina sequencing of library 15249489  constructed from sample accession ERS954839 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTCTAAGCCT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#8.cram,cram,3822332200.0,19111661.0,SC RUN 18222 1#8,0:100 1:100,A:989542225;C:925823012;G:903835738;T:1003115980;N:15245,100,100,,,989542225,925823012,903835738,1003115980,15245,ERX1361537,ERS954839,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94289,0.94174,0.07966,0.08004,0.72764,0.72906,0.51976,0.52464,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2336,ERR1289930,ERX1361536,ERS954838,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647689,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647689|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 low sc 2454960|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 low sc 2454960|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#7,15249488,Illumina sequencing of library 15249488  constructed from sample accession ERS954838 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTAAGGAGTA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#7.cram,cram,1072510200.0,5362551.0,SC RUN 18222 1#7,0:100 1:100,A:284863902;C:253046005;G:241968135;T:292627849;N:4309,100,100,,,284863902,253046005,241968135,292627849,4309,ERX1361536,ERS954838,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.89703,0.89873,0.10191,0.10317,0.89921,0.8984,0.50884,0.51319,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2337,ERR1289929,ERX1361535,ERS954837,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647688,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647688|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP2 sc 2454959|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP2 sc 2454959|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#6,15249487,Illumina sequencing of library 15249487  constructed from sample accession ERS954837 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTACTGCATA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#6.cram,cram,3159715800.0,15798579.0,SC RUN 18222 1#6,0:100 1:100,A:837700548;C:745877706;G:727508293;T:848616717;N:12536,100,100,,,837700548,745877706,727508293,848616717,12536,ERX1361535,ERS954837,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.93397,0.93362,0.10011,0.10205,0.73474,0.73612,0.49003,0.49085,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2338,ERR1289928,ERX1361534,ERS954836,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647687,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647687|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:ATH5 1 sc 2454958|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 1 sc 2454958|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#5,15249486,Illumina sequencing of library 15249486  constructed from sample accession ERS954836 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#5.cram,cram,1184332600.0,5921663.0,SC RUN 18222 1#5,0:100 1:100,A:321129432;C:272595945;G:264945795;T:325656767;N:4661,100,100,,,321129432,272595945,264945795,325656767,4661,ERX1361534,ERS954836,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.92372,0.92353,0.12445,0.12616,0.76339,0.76495,0.48995,0.48259,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2339,ERR1289927,ERX1361533,ERS954835,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647686,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647686|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP1 sc 2454957|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP1 sc 2454957|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#4,15249485,Illumina sequencing of library 15249485  constructed from sample accession ERS954835 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTAGAGTAGA.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#4.cram,cram,2331489600.0,11657448.0,SC RUN 18222 1#4,0:100 1:100,A:610715735;C:559128165;G:540406653;T:621229940;N:9107,100,100,,,610715735,559128165,540406653,621229940,9107,ERX1361533,ERS954835,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9338,0.93348,0.10518,0.10783,0.77155,0.77374,0.49506,0.49808,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2340,ERR1289926,ERX1361532,ERS954834,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647685,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647685|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP1 sc 2454956|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP1 sc 2454956|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#3,15249484,Illumina sequencing of library 15249484  constructed from sample accession ERS954834 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTTATCCTCT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#3.cram,cram,2923134800.0,14615674.0,SC RUN 18222 1#3,0:100 1:100,A:760057089;C:705694497;G:690249046;T:767122385;N:11783,100,100,,,760057089,705694497,690249046,767122385,11783,ERX1361532,ERS954834,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94509,0.94377,0.07431,0.07512,0.74367,0.74525,0.50981,0.51595,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2341,ERR1289925,ERX1361531,ERS954833,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647684,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:15Z|External Id:SAMEA3647684|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:15Z|INSDC status:public|Submitter Id:RX2 GFP1 sc 2454955|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP1 sc 2454955|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#2,15249483,Illumina sequencing of library 15249483  constructed from sample accession ERS954833 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTCTCTCTAT.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#2.cram,cram,2423614200.0,12118071.0,SC RUN 18222 1#2,0:100 1:100,A:622254096;C:592596967;G:579007199;T:629746522;N:9416,100,100,,,622254096,592596967,579007199,629746522,9416,ERX1361531,ERS954833,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94151,0.94151,0.08127,0.08228,0.79091,0.79235,0.51421,0.50953,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
2342,ERR1289924,ERX1361530,ERS954832,ERP012920,PRJEB11523,Zebrafish eye populations transcriptomics,Zebrafish_eye_populations_transcriptomics-sc-3967,Transcriptome Analysis,To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio  eyes were prepared as follows: 20 30 eyes per condition were collected  dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated  and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform.,ArrayExpress:E ERAD 441,,,,SAMEA3647683,SC,ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647683|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ctrl noGFP sc 2454954|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ctrl noGFP sc 2454954|scientific name:Danio rerio,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 18222 1#1,15249482,Illumina sequencing of library 15249482  constructed from sample accession ERS954832 for study accession ERP012920.  This is part of an Illumina multiplexed sequencing run 18222 1.  This submission includes reads tagged with the sequence GGACTCCTTAGATCGC.,Nextera dual index qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP012920,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16,18222_1#1.cram,cram,359779800.0,1798899.0,SC RUN 18222 1#1,0:100 1:100,A:84065568;C:96668644;G:92071125;T:86973168;N:1295,100,100,,,84065568,96668644,92071125,86973168,1295,ERX1361530,ERS954832,ERA565862,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9502,0.9506,0.07759,0.07791,0.71772,0.71827,0.44568,0.45005,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,nextera,bulk,unknown,unknown,,United Kingdom,2016-02-23,Undetermined,Embryo,Eye,Sensory System
5793,ERR1955208,ERX2020800,ERS1697077,ERP017053,PRJEB15333,Transposon driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution,ena-STUDY-EMBL EUROPEAN BIOINFORMATICS INSTITUTE-07-09-2016-10:25:55:499-247,Other,In order to better understand the features associated with male germline transcription we profiled the RNA expression in a number of germline cell types. These include spermatogonial stem cells  spermatocytes and round spermatids in mouse and spermatocytes in rat. We also profiled the transcription in zebrafish testes. As a consequence it became apparent that transposable elements are driving considerable lncRNA expression in the later stages of spermatogenesis. This is particularly apparent in the case of endogenous retroviruses in rodents.,ENA FIRST PUBLIC:2017 01 31|ENA LAST UPDATE:2017 05 08,,,Transcriptional profiling of zebrafish testes for analysis of conserved repeat element associations,SAMEA104033184,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,ENA FIRST PUBLIC:2017 05 10T17:01:28Z|ENA LAST UPDATE:2017 04 28T10:34:37Z|External Id:SAMEA104033184|INSDC center name:EMBL EUROPEAN BIOINFORMATICS INSTITUTE|INSDC first public:2017 05 10T17:01:28Z|INSDC last update:2017 04 28T10:34:37Z|INSDC status:public|Submitter Id:Zebrafish.Testis 2|common name:zebrafish|sample name:Zebrafish.Testis 2|scientific name:Danio rerio|strain:AB|tissue type:testis,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,ena EXPERIMENT EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 16,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP017053,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2017 05 10|ENA LAST UPDATE:2018 11 16,zebrafish_testis_2.conserved.1.fastq.gz zebrafish_testis_2.conserved.2.fastq.gz,fastq fastq,46555372886.0,230472143.0,ena RUN EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 16,0:101 1:101,A:12260062264;C:10888457642;G:11605642683;T:11637267744;N:163942553,101,101,,,12260062264,10888457642,11605642683,11637267744,163942553,ERX2020800,ERS1697077,ERA904389,EMBL EUROPEAN BIOINFORMATICS INSTITUTE|European Nucleotide Archive,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,2,0.93165,0.92785,0.29822,0.32141,0.71386,0.71971,0.66173,0.63843,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2017-01-31,Undetermined,Undetermined,Gonad,Reproductive System
5794,ERR1955207,ERX2020799,ERS1697076,ERP017053,PRJEB15333,Transposon driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution,ena-STUDY-EMBL EUROPEAN BIOINFORMATICS INSTITUTE-07-09-2016-10:25:55:499-247,Other,In order to better understand the features associated with male germline transcription we profiled the RNA expression in a number of germline cell types. These include spermatogonial stem cells  spermatocytes and round spermatids in mouse and spermatocytes in rat. We also profiled the transcription in zebrafish testes. As a consequence it became apparent that transposable elements are driving considerable lncRNA expression in the later stages of spermatogenesis. This is particularly apparent in the case of endogenous retroviruses in rodents.,ENA FIRST PUBLIC:2017 01 31|ENA LAST UPDATE:2017 05 08,,,Transcriptional profiling of zebrafish testes for analysis of conserved repeat element associations,SAMEA104033183,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,ENA FIRST PUBLIC:2017 05 10T17:01:28Z|ENA LAST UPDATE:2017 04 28T10:34:37Z|External Id:SAMEA104033183|INSDC center name:EMBL EUROPEAN BIOINFORMATICS INSTITUTE|INSDC first public:2017 05 10T17:01:28Z|INSDC last update:2017 04 28T10:34:37Z|INSDC status:public|Submitter Id:Zebrafish.Testis 1|common name:zebrafish|sample name:Zebrafish.Testis 1|scientific name:Danio rerio|strain:AB|tissue type:testis,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,ena EXPERIMENT EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 15,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP017053,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2017 05 10|ENA LAST UPDATE:2018 11 16,zebrafish_testis_1.conserved.1.fastq.gz zebrafish_testis_1.conserved.2.fastq.gz,fastq fastq,41056086708.0,203247954.0,ena RUN EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 15,0:101 1:101,A:10675591750;C:9672762387;G:10139834713;T:10380949257;N:186948601,101,101,,,10675591750,9672762387,10139834713,10380949257,186948601,ERX2020799,ERS1697076,ERA904389,EMBL EUROPEAN BIOINFORMATICS INSTITUTE|European Nucleotide Archive,EMBL EUROPEAN BIOINFORMATICS INSTITUTE,2,0.92308,0.9157,0.30221,0.31293,0.68276,0.68836,0.56114,0.5857,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2017-01-31,Undetermined,Undetermined,Gonad,Reproductive System
8076,ERR2304209,ERX2355537,ERS2201745,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep3,SAMEA104590463,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12,9 psen1K97Gfshet 24mth 13 03 2014 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz,fastq fastq,9318039088.0,38360343.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12,0:121.17 1:121.74,A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148,121,121,,,2583644589,2091813317,2105322994,2536795040,463148,ERX2355537,ERS2201745,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.93003,0.92836,0.26254,0.26157,0.68992,0.69593,0.48246,0.48292,134,134,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8077,ERR2304208,ERX2355536,ERS2201744,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep2,SAMEA104590462,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11,8 psen1K97Gfshet 24mth 13 03 2014 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz,fastq fastq,8559244581.0,35608377.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11,0:119.87 1:120.50,A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710,119,120,,,2397336730,1892236963,1910506310,2358778868,385710,ERX2355536,ERS2201744,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92422,0.92311,0.30514,0.30437,0.69578,0.7008,0.49054,0.48857,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8078,ERR2304207,ERX2355535,ERS2201743,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged mutant biorep1,SAMEA104590461,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590461|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep1|common name:zebrafish|sample name:Aged mutant biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10,7 psen1K97Gfshet 24mth 13 03 2014 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R1.fastq.gz 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R2.fastq.gz,fastq fastq,6521711648.0,27182062.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10,0:119.65 1:120.27,A:1831722484;C:1434689482;G:1449266189;T:1805677755;N:355738,119,120,,,1831722484,1434689482,1449266189,1805677755,355738,ERX2355535,ERS2201743,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92564,0.92498,0.29344,0.29212,0.69327,0.69964,0.48557,0.48942,86,86,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8079,ERR2304206,ERX2355534,ERS2201742,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep3,SAMEA104590460,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590460|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep3|common name:zebrafish|sample name:Aged wild type biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9,3 non mutant K97Gfs 24mth 13 03 2014 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R1.fastq.gz 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R2.fastq.gz,fastq fastq,6865452019.0,28646225.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9,0:119.50 1:120.16,A:1903309108;C:1535570672;G:1550661363;T:1875578941;N:331935,119,120,,,1903309108,1535570672,1550661363,1875578941,331935,ERX2355534,ERS2201742,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92997,0.92904,0.26949,0.26497,0.69485,0.70072,0.49378,0.50075,96,96,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8080,ERR2304205,ERX2355533,ERS2201741,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep2,SAMEA104590459,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590459|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep2|common name:zebrafish|sample name:Aged wild type biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8,2 non mutant K97Gfs 24mth 13 03 2014 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R1.fastq.gz 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R2.fastq.gz,fastq fastq,8418868343.0,34905186.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8,0:120.29 1:120.91,A:2334515884;C:1885784857;G:1900432559;T:2297775998;N:359045,120,120,,,2334515884,1885784857,1900432559,2297775998,359045,ERX2355533,ERS2201741,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.93078,0.92967,0.25478,0.25365,0.69372,0.69938,0.4988,0.49709,132,132,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8081,ERR2304204,ERX2355532,ERS2201740,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Aged wild type biorep1,SAMEA104590458,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590458|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep1|common name:zebrafish|sample name:Aged wild type biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7,1 non mutant K97Gfs 24mth 13 03 2014 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R1.fastq.gz 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R2.fastq.gz,fastq fastq,6628468736.0,27477727.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7,0:120.31 1:120.92,A:1839014115;C:1487750495;G:1497160978;T:1804205119;N:338029,120,120,,,1839014115,1487750495,1497160978,1804205119,338029,ERX2355532,ERS2201740,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92916,0.92783,0.28453,0.28375,0.69798,0.70289,0.48132,0.48227,125,125,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8082,ERR2304203,ERX2355531,ERS2201739,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep3,SAMEA104590457,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590457|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep3|common name:zebrafish|sample name:Young mutant biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6,12 psen1K97Gfshet 6mth 10 03 2016 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R1.fastq.gz 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R2.fastq.gz,fastq fastq,11485397100.0,38284657.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6,0:150 1:150,A:3206707597;C:2539306860;G:2721427816;T:3015264084;N:2690743,150,150,,,3206707597,2539306860,2721427816,3015264084,2690743,ERX2355531,ERS2201739,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92853,0.92813,0.26757,0.26433,0.68487,0.68903,0.47708,0.47074,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8083,ERR2304202,ERX2355530,ERS2201738,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep2,SAMEA104590456,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590456|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep2|common name:zebrafish|sample name:Young mutant biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5,11 psen1K97Gfshet 6mth 10 03 2016 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R1.fastq.gz 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R2.fastq.gz,fastq fastq,13258122000.0,44193740.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5,0:150 1:150,A:3781076311;C:2868334319;G:3063279426;T:3542309854;N:3122090,150,150,,,3781076311,2868334319,3063279426,3542309854,3122090,ERX2355530,ERS2201738,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91552,0.91659,0.32337,0.32168,0.69546,0.698,0.4697,0.47295,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8084,ERR2304201,ERX2355529,ERS2201737,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young mutant biorep1,SAMEA104590455,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4,10 psen1K97Gfshet 6mth 10 03 2016 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz,fastq fastq,11724649800.0,39082166.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4,0:150 1:150,A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083,150,150,,,3304100658,2560616667,2779636286,3077545106,2751083,ERX2355529,ERS2201737,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.92121,0.91893,0.28263,0.27928,0.69073,0.6953,0.47174,0.46157,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8085,ERR2304200,ERX2355528,ERS2201736,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep3,SAMEA104590454,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590454|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep3|common name:zebrafish|sample name:Young wild type biorep3,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3,6 non mutant K97Gfs 6mth 10 03 2016 S3 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R2.fastq.gz,fastq fastq,24923212200.0,83077374.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3,0:150 1:150,A:7077378299;C:5398402396;G:5838059014;T:6604505033;N:4867458,150,150,,,7077378299,5398402396,5838059014,6604505033,4867458,ERX2355528,ERS2201736,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91973,0.92144,0.29148,0.29015,0.69587,0.69994,0.46145,0.47047,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8086,ERR2304199,ERX2355527,ERS2201735,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep2,SAMEA104590453,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590453|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep2|common name:zebrafish|sample name:Young wild type biorep2,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2,5 non mutant K97Gfs 6mth 10 03 2016 S2 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R2.fastq.gz,fastq fastq,7840317153.0,39006553.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2,0:101 1:100,A:2200490653;C:1718458832;G:1730278863;T:2188900320;N:2188485,101,100,,,2200490653,1718458832,1730278863,2188900320,2188485,ERX2355527,ERS2201735,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91783,0.91983,0.32092,0.32105,0.67714,0.67691,0.47312,0.47481,101,100,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8087,ERR2304198,ERX2355526,ERS2201734,ERP106721,PRJEB24858,Zebrafish   modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1,ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099,Other,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not.,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08,,,Young wild type biorep1,SAMEA104590452,Adelaide Bioinformatics Hub,ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1,4 non mutant K97Gfs 6mth 10 03 2016 S1 fem,RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease,Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,NextSeq 500,,ERP106721,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16,4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz,fastq fastq,13910901600.0,46369672.0,ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1,0:150 1:150,A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629,150,150,,,3994738757,2957179645,3191379676,3764325893,3277629,ERX2355526,ERS2201734,ERA1210082,Adelaide Bioinformatics Hub|European Nucleotide Archive,Adelaide Bioinformatics Hub,2,0.91399,0.9166,0.3202,0.31818,0.6942,0.698,0.46902,0.47111,150,150,B,B,biological fallback assumption,illumina,nextseq,unknown,random_priming,unknown,bulk,unknown,unknown,,Australia,2018-02-08,Undetermined,Adult,Brain,Nervous System
8092,ERR2402432,ERX2443286,ERS2295360,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Hom MO rep3,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693977,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693977|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM12|common name:zebrafish|sample name:CM12|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 12,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM12.trimmed.read_1.fastq.gz CM12.trimmed.read_2.fastq.gz,fastq fastq,5384061477.0,38388598.0,ena RUN DPSQ 14 03 2018 19:09:09:420 12,0:70.70 1:69.55,A:1490429493;C:1197976503;G:1220014984;T:1475615043;N:25454,70,69,,,1490429493,1197976503,1220014984,1475615043,25454,ERX2443286,ERS2295360,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.92285,0.9206,0.06862,0.0688,0.73983,0.74566,0.4752,0.49125,76,75,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8093,ERR2402431,ERX2443285,ERS2295359,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Hom MO rep2,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693976,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693976|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM11|common name:zebrafish|sample name:CM11|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 11,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM11.trimmed.read_1.fastq.gz CM11.trimmed.read_2.fastq.gz,fastq fastq,5472085589.0,38860681.0,ena RUN DPSQ 14 03 2018 19:09:09:420 11,0:70.98 1:69.83,A:1514986213;C:1217661004;G:1240412104;T:1499000816;N:25452,70,69,,,1514986213,1217661004,1240412104,1499000816,25452,ERX2443285,ERS2295359,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.91987,0.91874,0.0693,0.07042,0.74042,0.74629,0.48229,0.49144,76,76,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8094,ERR2402430,ERX2443284,ERS2295358,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Hom MO rep1,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693975,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693975|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM10|common name:zebrafish|sample name:CM10|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 10,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM10.trimmed.read_1.fastq.gz CM10.trimmed.read_2.fastq.gz,fastq fastq,6091085806.0,43064771.0,ena RUN DPSQ 14 03 2018 19:09:09:420 10,0:71.33 1:70.11,A:1692450462;C:1348639943;G:1375433963;T:1674532019;N:29419,71,70,,,1692450462,1348639943,1375433963,1674532019,29419,ERX2443284,ERS2295358,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.92184,0.92064,0.0699,0.0704,0.74286,0.74874,0.48978,0.48997,75,73,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8095,ERR2402429,ERX2443283,ERS2295357,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Hom uninj rep3,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693974,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693974|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM9|common name:zebrafish|sample name:CM9|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 9,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM9.trimmed.read_1.fastq.gz CM9.trimmed.read_2.fastq.gz,fastq fastq,6329252570.0,45070159.0,ena RUN DPSQ 14 03 2018 19:09:09:420 9,0:70.79 1:69.64,A:1753489708;C:1407193617;G:1433449502;T:1735090181;N:29562,70,69,,,1753489708,1407193617,1433449502,1735090181,29562,ERX2443283,ERS2295357,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.91683,0.91616,0.06775,0.06825,0.75158,0.75737,0.49386,0.49199,76,75,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8096,ERR2402428,ERX2443282,ERS2295356,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Hom uninj rep2,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693973,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693973|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM8|common name:zebrafish|sample name:CM8|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 8,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM8.trimmed.read_1.fastq.gz CM8.trimmed.read_2.fastq.gz,fastq fastq,5405185494.0,38637007.0,ena RUN DPSQ 14 03 2018 19:09:09:420 8,0:70.45 1:69.44,A:1491577735;C:1206599147;G:1229354248;T:1477628006;N:26358,70,69,,,1491577735,1206599147,1229354248,1477628006,26358,ERX2443282,ERS2295356,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.91776,0.91567,0.07134,0.07241,0.7517,0.75716,0.47952,0.48745,73,73,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8097,ERR2402427,ERX2443281,ERS2295355,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Hom uninj rep1,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693972,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693972|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM7|common name:zebrafish|sample name:CM7|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 7,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM7.trimmed.read_1.fastq.gz CM7.trimmed.read_2.fastq.gz,fastq fastq,6262947202.0,44863127.0,ena RUN DPSQ 14 03 2018 19:09:09:420 7,0:70.28 1:69.32,A:1732018658;C:1394742098;G:1420957611;T:1715198292;N:30543,70,69,,,1732018658,1394742098,1420957611,1715198292,30543,ERX2443281,ERS2295355,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.91622,0.9144,0.0754,0.07588,0.74886,0.75371,0.48672,0.48471,76,76,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8098,ERR2402426,ERX2443280,ERS2295354,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Het MO rep3,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693971,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693971|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM6|common name:zebrafish|sample name:CM6|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 6,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM6.trimmed.read_1.fastq.gz CM6.trimmed.read_2.fastq.gz,fastq fastq,5819615834.0,41591499.0,ena RUN DPSQ 14 03 2018 19:09:09:420 6,0:70.47 1:69.45,A:1594833553;C:1309877713;G:1335153588;T:1579722744;N:28236,70,69,,,1594833553,1309877713,1335153588,1579722744,28236,ERX2443280,ERS2295354,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.92,0.9183,0.0573,0.05793,0.77362,0.778,0.47792,0.46987,76,75,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8099,ERR2402425,ERX2443279,ERS2295353,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Het MO rep2,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693970,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693970|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM5|common name:zebrafish|sample name:CM5|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 5,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM5.trimmed.read_1.fastq.gz CM5.trimmed.read_2.fastq.gz,fastq fastq,5573895202.0,39518227.0,ena RUN DPSQ 14 03 2018 19:09:09:420 5,0:71.02 1:70.03,A:1530297250;C:1251775796;G:1276506882;T:1515288256;N:27018,71,70,,,1530297250,1251775796,1276506882,1515288256,27018,ERX2443279,ERS2295353,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.92217,0.92081,0.06807,0.06843,0.76926,0.77441,0.45543,0.48098,76,75,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8100,ERR2402424,ERX2443278,ERS2295352,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Het MO rep1,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693969,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693969|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM4|common name:zebrafish|sample name:CM4|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 4,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM4.trimmed.read_1.fastq.gz CM4.trimmed.read_2.fastq.gz,fastq fastq,5803404091.0,41335851.0,ena RUN DPSQ 14 03 2018 19:09:09:420 4,0:70.72 1:69.67,A:1590577583;C:1305683925;G:1331895549;T:1575219146;N:27888,70,69,,,1590577583,1305683925,1331895549,1575219146,27888,ERX2443278,ERS2295352,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.9216,0.91971,0.05719,0.05738,0.77333,0.77761,0.47789,0.47244,76,74,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8101,ERR2402423,ERX2443277,ERS2295351,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Het uninj rep3,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693968,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693968|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM3|common name:zebrafish|sample name:CM3|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 3,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM3.trimmed.read_1.fastq.gz CM3.trimmed.read_2.fastq.gz,fastq fastq,5992797058.0,42390223.0,ena RUN DPSQ 14 03 2018 19:09:09:420 3,0:71.26 1:70.11,A:1639390320;C:1352082344;G:1378624207;T:1622672043;N:28144,71,70,,,1639390320,1352082344,1378624207,1622672043,28144,ERX2443277,ERS2295351,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.92104,0.92006,0.07044,0.07056,0.77506,0.78137,0.48154,0.46497,75,75,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8102,ERR2402422,ERX2443276,ERS2295350,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Het uninj rep2,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693967,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693967|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM2|common name:zebrafish|sample name:CM2|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 2,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM2.trimmed.read_2.fastq.gz CM2.trimmed.read_1.fastq.gz,fastq fastq,5611396868.0,39759688.0,ena RUN DPSQ 14 03 2018 19:09:09:420 2,0:71.11 1:70.02,A:1537234166;C:1262883447;G:1288444384;T:1522807333;N:27538,71,70,,,1537234166,1262883447,1288444384,1522807333,27538,ERX2443276,ERS2295350,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.91881,0.91733,0.06861,0.06958,0.77238,0.77883,0.48415,0.47367,76,73,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
8103,ERR2402421,ERX2443275,ERS2295349,ERP107516,PRJEB25583,The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151,Other,The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression  primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here  we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose  we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3  HetMO1 3  Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform.,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14,,Het uninj rep1,Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos,SAMEA104693966,DPSQ,ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693966|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM1|common name:zebrafish|sample name:CM1|scientific name:Danio rerio,,,,,,,,,NextSeq 500 paired end sequencing,ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 1,unspecified,1,,,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,PAIRED,ILLUMINA,NextSeq 500,,ERP107516,NextSeq 500 paired end sequencing,ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16,CM1.trimmed.read_1.fastq.gz CM1.trimmed.read_2.fastq.gz,fastq fastq,6229432533.0,44233290.0,ena RUN DPSQ 14 03 2018 19:09:09:420 1,0:70.98 1:69.85,A:1712806281;C:1395764700;G:1423415860;T:1697416127;N:29565,70,69,,,1712806281,1395764700,1423415860,1697416127,29565,ERX2443275,ERS2295349,ERA1246315,European Nucleotide Archive,"Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom",2,0.91818,0.9169,0.07104,0.07095,0.77585,0.78066,0.47896,0.46653,56,56,B,B,biological fallback assumption,illumina,nextseq,full_length,poly_a,unknown,bulk,unknown,unknown,,United Kingdom,2018-03-14,Undetermined,Embryo,Blood,Hematopoietic System
9199,ERR202605,ERX177290,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#8.bam,bam,2121913050.0,14146087.0,SC RUN 7991 5#8,0:75 1:75,A:567258901;C:498104770;G:490053960;T:566313017;N:182402,75,75,,,567258901,498104770,490053960,566313017,182402,ERX177290,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.94,0.94028,0.03528,0.03489,0.79064,0.79178,0.47341,0.4765,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9200,ERR202604,ERX177289,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#7.bam,bam,2219955900.0,14799706.0,SC RUN 7991 5#7,0:75 1:75,A:591871553;C:522813580;G:513375455;T:591698075;N:197237,75,75,,,591871553,522813580,513375455,591698075,197237,ERX177289,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.93987,0.94046,0.02941,0.02961,0.79427,0.7947,0.47542,0.47795,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9201,ERR202603,ERX177288,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#6.bam,bam,1955600700.0,13037338.0,SC RUN 7991 5#6,0:75 1:75,A:519562252;C:462848772;G:455819957;T:517200965;N:168754,75,75,,,519562252,462848772,455819957,517200965,168754,ERX177288,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93833,0.93957,0.03684,0.0371,0.79608,0.79663,0.47421,0.47624,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9202,ERR202602,ERX177287,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#5.bam,bam,2016609300.0,13444062.0,SC RUN 7991 5#5,0:75 1:75,A:538289622;C:474363061;G:465399227;T:538378222;N:179168,75,75,,,538289622,474363061,465399227,538378222,179168,ERX177287,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93831,0.93934,0.03188,0.03148,0.79582,0.79632,0.47508,0.4759,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9203,ERR202601,ERX177286,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#4.bam,bam,2365931250.0,15772875.0,SC RUN 7991 5#4,0:75 1:75,A:636503744;C:554252371;G:544819310;T:630147977;N:207848,75,75,,,636503744,554252371,544819310,630147977,207848,ERX177286,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93407,0.93465,0.04392,0.04349,0.79742,0.79888,0.48491,0.48861,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9204,ERR202600,ERX177285,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#3.bam,bam,1867481400.0,12449876.0,SC RUN 7991 5#3,0:75 1:75,A:496520844;C:442045683;G:434406743;T:494345170;N:162960,75,75,,,496520844,442045683,434406743,494345170,162960,ERX177285,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93762,0.93824,0.03692,0.03672,0.80099,0.80178,0.48162,0.48265,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9205,ERR202599,ERX177284,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#2.bam,bam,1972001850.0,13146679.0,SC RUN 7991 5#2,0:75 1:75,A:523509540;C:467622710;G:461161908;T:519533355;N:174337,75,75,,,523509540,467622710,461161908,519533355,174337,ERX177284,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93849,0.93832,0.0458,0.04569,0.80202,0.80255,0.48921,0.48689,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9206,ERR202598,ERX177283,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 5#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 5.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_5#1.bam,bam,1747053750.0,11647025.0,SC RUN 7991 5#1,0:75 1:75,A:458130779;C:420533667;G:414256535;T:453983497;N:149272,75,75,,,458130779,420533667,414256535,453983497,149272,ERX177283,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93785,0.9385,0.05909,0.05935,0.80734,0.80844,0.50928,0.50801,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9207,ERR202597,ERX177282,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#14.bam,bam,1981705350.0,13211369.0,SC RUN 7991 4#14,0:75 1:75,A:490981094;C:506542368;G:496976502;T:487030001;N:175385,75,75,,,490981094,506542368,496976502,487030001,175385,ERX177282,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.94913,0.94988,0.11934,0.11735,0.79389,0.79506,0.55798,0.55984,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9208,ERR202596,ERX177281,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#13.bam,bam,1995771750.0,13305145.0,SC RUN 7991 4#13,0:75 1:75,A:536200962;C:466283583;G:457887165;T:535220047;N:179993,75,75,,,536200962,466283583,457887165,535220047,179993,ERX177281,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93868,0.93911,0.03171,0.03166,0.78188,0.7819,0.47614,0.47694,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9209,ERR202595,ERX177280,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#12.bam,bam,2261625600.0,15077504.0,SC RUN 7991 4#12,0:75 1:75,A:608829925;C:527074335;G:515433838;T:610082988;N:204514,75,75,,,608829925,527074335,515433838,610082988,204514,ERX177280,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93429,0.93602,0.03326,0.03323,0.78356,0.78415,0.4783,0.47905,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9210,ERR202594,ERX177279,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#11.bam,bam,1864306650.0,12428711.0,SC RUN 7991 4#11,0:75 1:75,A:496583931;C:439468591;G:431127617;T:496960970;N:165541,75,75,,,496583931,439468591,431127617,496960970,165541,ERX177279,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93737,0.93919,0.03019,0.03053,0.78472,0.78545,0.47617,0.47092,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9211,ERR202593,ERX177278,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#10.bam,bam,2202540150.0,14683601.0,SC RUN 7991 4#10,0:75 1:75,A:592834648;C:513214690;G:504159061;T:592128872;N:202879,75,75,,,592834648,513214690,504159061,592128872,202879,ERX177278,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.9379,0.93859,0.03096,0.03116,0.78896,0.78969,0.4757,0.47516,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9212,ERR202592,ERX177277,ERS128306,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570546,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#9,5151819,Illumina sequencing of library 5151819  constructed from sample accession ERS128306 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence GATCAG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#9.bam,bam,2046450450.0,13643003.0,SC RUN 7991 4#9,0:75 1:75,A:550418673;C:477579035;G:470025972;T:548246265;N:180505,75,75,,,550418673,477579035,470025972,548246265,180505,ERX177277,ERS128306,ERA176708,SC,Wellcome Sanger Institute,2,0.93837,0.93803,0.03318,0.03292,0.78932,0.78926,0.47721,0.47833,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9213,ERR202591,ERX177276,ERS128273,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570565,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#8,5151818,Illumina sequencing of library 5151818  constructed from sample accession ERS128273 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence ACTTGA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#8.bam,bam,2146032300.0,14306882.0,SC RUN 7991 4#8,0:75 1:75,A:574474648;C:503052481;G:495171322;T:573140749;N:193100,75,75,,,574474648,503052481,495171322,573140749,193100,ERX177276,ERS128273,ERA176708,SC,Wellcome Sanger Institute,2,0.93887,0.93954,0.03558,0.03582,0.7919,0.79241,0.47725,0.4787,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9214,ERR202590,ERX177275,ERS128284,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570567,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#7,5151817,Illumina sequencing of library 5151817  constructed from sample accession ERS128284 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence CAGATC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#7.bam,bam,2238267300.0,14921782.0,SC RUN 7991 4#7,0:75 1:75,A:597541807;C:526350654;G:517089680;T:597082511;N:202648,75,75,,,597541807,526350654,517089680,597082511,202648,ERX177275,ERS128284,ERA176708,SC,Wellcome Sanger Institute,2,0.93861,0.9405,0.02965,0.02985,0.79364,0.79385,0.47603,0.47625,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9215,ERR202589,ERX177274,ERS128314,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570531,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#6,5151816,Illumina sequencing of library 5151816  constructed from sample accession ERS128314 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence GCCAAT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#6.bam,bam,1974823650.0,13165491.0,SC RUN 7991 4#6,0:75 1:75,A:525373810;C:466687779;G:459819481;T:522768904;N:173676,75,75,,,525373810,466687779,459819481,522768904,173676,ERX177274,ERS128314,ERA176708,SC,Wellcome Sanger Institute,2,0.93806,0.93893,0.03675,0.0363,0.79511,0.79561,0.48385,0.48225,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9216,ERR202588,ERX177273,ERS128270,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570571,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#5,5151815,Illumina sequencing of library 5151815  constructed from sample accession ERS128270 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence ACAGTG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#5.bam,bam,2048949000.0,13659660.0,SC RUN 7991 4#5,0:75 1:75,A:547633159;C:481206721;G:472394846;T:547531589;N:182685,75,75,,,547633159,481206721,472394846,547531589,182685,ERX177273,ERS128270,ERA176708,SC,Wellcome Sanger Institute,2,0.93912,0.94025,0.03184,0.03173,0.7962,0.79717,0.47256,0.46963,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9217,ERR202587,ERX177272,ERS128290,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570529,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#4,5151814,Illumina sequencing of library 5151814  constructed from sample accession ERS128290 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence TGACCA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#4.bam,bam,2397136950.0,15980913.0,SC RUN 7991 4#4,0:75 1:75,A:645756664;C:560617608;G:551403590;T:639141308;N:217780,75,75,,,645756664,560617608,551403590,639141308,217780,ERX177272,ERS128290,ERA176708,SC,Wellcome Sanger Institute,2,0.93298,0.93415,0.04429,0.04429,0.79951,0.80002,0.48808,0.4893,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9218,ERR202586,ERX177271,ERS128281,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570538,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#3,5151813,Illumina sequencing of library 5151813  constructed from sample accession ERS128281 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence TTAGGC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#3.bam,bam,1898116050.0,12654107.0,SC RUN 7991 4#3,0:75 1:75,A:505392252;C:448615309;G:441023506;T:502913555;N:171428,75,75,,,505392252,448615309,441023506,502913555,171428,ERX177271,ERS128281,ERA176708,SC,Wellcome Sanger Institute,2,0.93715,0.93909,0.03779,0.03782,0.80158,0.80127,0.48326,0.47856,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9219,ERR202585,ERX177270,ERS128267,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570539,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#2,5151812,Illumina sequencing of library 5151812  constructed from sample accession ERS128267 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence CGATGT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#2.bam,bam,1999522350.0,13330149.0,SC RUN 7991 4#2,0:75 1:75,A:531561607;C:473366722;G:467074052;T:527343528;N:176441,75,75,,,531561607,473366722,467074052,527343528,176441,ERX177270,ERS128267,ERA176708,SC,Wellcome Sanger Institute,2,0.93778,0.93895,0.0452,0.04522,0.80206,0.80273,0.49236,0.48956,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9220,ERR202584,ERX177269,ERS128323,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570532,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 4#1,5151811,Illumina sequencing of library 5151811  constructed from sample accession ERS128323 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 4.  This submission includes reads tagged with the sequence ATCACG.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_4#1.bam,bam,1775218500.0,11834790.0,SC RUN 7991 4#1,0:75 1:75,A:466226290;C:426610287;G:420392247;T:461832087;N:157589,75,75,,,466226290,426610287,420392247,461832087,157589,ERX177269,ERS128323,ERA176708,SC,Wellcome Sanger Institute,2,0.93845,0.93837,0.05925,0.05885,0.80736,0.80773,0.50767,0.51351,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9221,ERR202583,ERX177268,ERS128279,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570560,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#14,5151824,Illumina sequencing of library 5151824  constructed from sample accession ERS128279 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence AGTTCC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#14.bam,bam,1815365250.0,12102435.0,SC RUN 7991 3#14,0:75 1:75,A:449782753;C:463627745;G:454537452;T:447256720;N:160580,75,75,,,449782753,463627745,454537452,447256720,160580,ERX177268,ERS128279,ERA176708,SC,Wellcome Sanger Institute,2,0.95092,0.95048,0.11569,0.11332,0.79194,0.79249,0.56222,0.56601,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9222,ERR202582,ERX177267,ERS128320,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570554,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#13,5151823,Illumina sequencing of library 5151823  constructed from sample accession ERS128320 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence AGTCAA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#13.bam,bam,1857239250.0,12381595.0,SC RUN 7991 3#13,0:75 1:75,A:497768819;C:435075444;G:426744145;T:497478261;N:172581,75,75,,,497768819,435075444,426744145,497478261,172581,ERX177267,ERS128320,ERA176708,SC,Wellcome Sanger Institute,2,0.93996,0.93977,0.0316,0.03153,0.78102,0.78121,0.47463,0.47646,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9223,ERR202581,ERX177266,ERS128287,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570547,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#12,5151822,Illumina sequencing of library 5151822  constructed from sample accession ERS128287 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence CTTGTA.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#12.bam,bam,2100862650.0,14005751.0,SC RUN 7991 3#12,0:75 1:75,A:564157535;C:490878789;G:479532066;T:566093194;N:201066,75,75,,,564157535,490878789,479532066,566093194,201066,ERX177266,ERS128287,ERA176708,SC,Wellcome Sanger Institute,2,0.93423,0.93542,0.03251,0.03237,0.78378,0.78419,0.47701,0.47611,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9224,ERR202580,ERX177265,ERS128276,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570530,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#11,5151821,Illumina sequencing of library 5151821  constructed from sample accession ERS128276 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence GGCTAC.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#11.bam,bam,1806419400.0,12042796.0,SC RUN 7991 3#11,0:75 1:75,A:480009838;C:426886329;G:418328002;T:481030772;N:164459,75,75,,,480009838,426886329,418328002,481030772,164459,ERX177265,ERS128276,ERA176708,SC,Wellcome Sanger Institute,2,0.93961,0.94017,0.02933,0.02901,0.78695,0.78662,0.47409,0.4755,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures
9225,ERR202579,ERX177264,ERS128293,ERP001280,PRJEB2925,maternal to Zygotic Transition,maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599,Transcriptome Analysis,During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development  known as the maternal to zygotic transition MZT  the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.,,,,,SAMEA1570568,SC,ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF,,,,,,,,,1,SC EXP 7991 3#10,5151820,Illumina sequencing of library 5151820  constructed from sample accession ERS128293 for study accession ERP001280.  This is part of an Illumina multiplexed sequencing run 7991 3.  This submission includes reads tagged with the sequence TAGCTT.,Illumina cDNA protocol,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP001280,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16,7991_3#10.bam,bam,2048934000.0,13659560.0,SC RUN 7991 3#10,0:75 1:75,A:550192956;C:478684562;G:469641188;T:550228773;N:186521,75,75,,,550192956,478684562,469641188,550228773,186521,ERX177264,ERS128293,ERA176708,SC,Wellcome Sanger Institute,2,0.93834,0.93923,0.03112,0.0308,0.7881,0.78845,0.4797,0.46933,75,75,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2012-11-28,Undetermined,Embryo,Whole Organism,All anatomical structures