rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
77,DRR032747,DRX029553,DRS049952,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 6somite 2,SAMD00028144,,sample name:Dr 6somite 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:6somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028144,DRX029553,Dr 6somite 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028144,,,,3704431000.0,37044310.0,DRR032747,0:100 1:0,A:1001844161;C:856702913;G:850695568;T:995148798;N:39560,100,0,,,1001844161,856702913,850695568,995148798,39560,DRX029553,DRS049952,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92633,,0.09211,,0.72107,,0.47195,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
78,DRR032746,DRX029552,DRS049951,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 50 individuals,Dr 6somite 1,SAMD00028143,,sample name:Dr 6somite 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:6somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028143,DRX029552,Dr 6somite 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028143,,,,3529311900.0,35293119.0,DRR032746,0:100 1:0,A:953957996;C:816824469;G:811403696;T:947089530;N:36209,100,0,,,953957996,816824469,811403696,947089530,36209,DRX029552,DRS049951,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92437,,0.09257,,0.72113,,0.47004,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
92,DRR032732,DRX029538,DRS049937,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 80 individuals,Dr 14somite 3,SAMD00028129,,sample name:Dr 14somite 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028129,DRX029538,Dr 14somite 3,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028129,,,,3734610500.0,37346105.0,DRR032732,0:100 1:0,A:1009418541;C:863710067;G:858061383;T:1003378800;N:41709,100,0,,,1009418541,863710067,858061383,1003378800,41709,DRX029538,DRS049937,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92401,,0.08815,,0.70816,,0.46602,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
93,DRR032731,DRX029537,DRS049936,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 80 individuals,Dr 14somite 2,SAMD00028128,,sample name:Dr 14somite 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028128,DRX029537,Dr 14somite 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028128,,,,3715174200.0,37151742.0,DRR032731,0:100 1:0,A:1000703508;C:862290629;G:858173468;T:993968396;N:38199,100,0,,,1000703508,862290629,858173468,993968396,38199,DRX029537,DRS049936,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92491,,0.0819,,0.71068,,0.46957,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
94,DRR032730,DRX029536,DRS049935,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 80 individuals,Dr 14somite 1,SAMD00028127,,sample name:Dr 14somite 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:14somite|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028127,DRX029536,Dr 14somite 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028127,,,,3744386000.0,37443860.0,DRR032730,0:100 1:0,A:1014537326;C:864070910;G:859190201;T:1006549502;N:38061,100,0,,,1014537326,864070910,859190201,1006549502,38061,DRX029536,DRS049935,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92378,,0.08957,,0.7068,,0.47493,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Segmentation,Embryo,Whole Organism,All anatomical structures
3108,ERR1432021,ERX1502399,ERS1021931,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool12,SAMEA3714782,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714782|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:13Z|INSDC status:public|Submitter Id:6b397fd0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCAGCTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b397fd0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#23,15566085,Illumina sequencing of library 15566085  constructed from sample accession ERS1021931 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TTCAGCTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#23.cram,cram,1161350580.0,8933466.0,SC RUN 18913 4#23,0:55 1:75,A:303728554;C:217036915;G:221894738;T:418483111;N:207262,55,75,,,303728554,217036915,221894738,418483111,207262,ERX1502399,ERS1021931,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25221,0.61138,0.14157,0.15543,0.95787,0.85914,0.65706,0.6146,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3109,ERR1432020,ERX1502398,ERS1021930,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool11,SAMEA3714781,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714781|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:13Z|INSDC status:public|Submitter Id:6b349dd0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACTAGTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b349dd0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#22,15566084,Illumina sequencing of library 15566084  constructed from sample accession ERS1021930 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TACTAGTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#22.cram,cram,1747086120.0,13439124.0,SC RUN 18913 4#22,0:55 1:75,A:451522568;C:317996341;G:317813285;T:659447267;N:306659,55,75,,,451522568,317996341,317813285,659447267,306659,ERX1502398,ERS1021930,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29622,0.6491,0.16896,0.15773,0.95479,0.8505,0.40516,0.42427,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3110,ERR1432019,ERX1502397,ERS1021929,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool10,SAMEA3714780,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714780|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:12Z|INSDC status:public|Submitter Id:6b2fbbd0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCAGATTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b2fbbd0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#21,15566083,Illumina sequencing of library 15566083  constructed from sample accession ERS1021929 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCAGATTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#21.cram,cram,1355162120.0,10424324.0,SC RUN 18913 4#21,0:55 1:75,A:352847950;C:245782286;G:244785311;T:511498012;N:248561,55,75,,,352847950,245782286,244785311,511498012,248561,ERX1502397,ERS1021929,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26995,0.63776,0.156,0.15133,0.95517,0.85178,0.6043,0.57508,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3111,ERR1432018,ERX1502396,ERS1021928,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool9,SAMEA3714779,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714779|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:12Z|INSDC status:public|Submitter Id:6b2ab2c0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TATGCCAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b2ab2c0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#20,15566082,Illumina sequencing of library 15566082  constructed from sample accession ERS1021928 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TATGCCAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#20.cram,cram,1337981450.0,10292165.0,SC RUN 18913 4#20,0:55 1:75,A:347425579;C:245317946;G:245336966;T:499664801;N:236158,55,75,,,347425579,245317946,245336966,499664801,236158,ERX1502396,ERS1021928,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26718,0.6289,0.16274,0.15269,0.95753,0.85827,0.58683,0.56389,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3112,ERR1432017,ERX1502395,ERS1021927,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool8,SAMEA3714778,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714778|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:11Z|INSDC status:public|Submitter Id:6b25d0c0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGGCTCAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b25d0c0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#19,15566081,Illumina sequencing of library 15566081  constructed from sample accession ERS1021927 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TGGCTCAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#19.cram,cram,1242833540.0,9560258.0,SC RUN 18913 4#19,0:55 1:75,A:324500324;C:229841404;G:229822796;T:458452168;N:216848,55,75,,,324500324,229841404,229822796,458452168,216848,ERX1502395,ERS1021927,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2826,0.63045,0.16135,0.15943,0.95351,0.85703,0.63565,0.41807,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3113,ERR1432016,ERX1502394,ERS1021926,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool7,SAMEA3714777,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714777|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:11Z|INSDC status:public|Submitter Id:6b20eec0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCATTGAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b20eec0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#18,15566080,Illumina sequencing of library 15566080  constructed from sample accession ERS1021926 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCATTGAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#18.cram,cram,1531590060.0,11781462.0,SC RUN 18913 4#18,0:55 1:75,A:406121824;C:277860783;G:272778741;T:574553170;N:275542,55,75,,,406121824,277860783,272778741,574553170,275542,ERX1502394,ERS1021926,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27619,0.6213,0.16528,0.15917,0.95341,0.85117,0.55441,0.5349,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3114,ERR1432015,ERX1502393,ERS1021925,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool5,SAMEA3714776,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:10Z|INSDC status:public|Submitter Id:6b1a5f10 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCAGTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b1a5f10 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#17,15566079,Illumina sequencing of library 15566079  constructed from sample accession ERS1021925 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCCAGTCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#17.cram,cram,1497862990.0,11522023.0,SC RUN 18913 4#17,0:55 1:75,A:383210097;C:276781176;G:278130361;T:559485459;N:255897,55,75,,,383210097,276781176,278130361,559485459,255897,ERX1502393,ERS1021925,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27974,0.64305,0.15579,0.14372,0.95217,0.84975,0.59974,0.42095,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3115,ERR1432014,ERX1502392,ERS1021924,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool4,SAMEA3714775,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714775|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:10Z|INSDC status:public|Submitter Id:6b15a420 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAAGTTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b15a420 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#16,15566078,Illumina sequencing of library 15566078  constructed from sample accession ERS1021924 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TAAGTTCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#16.cram,cram,1187709900.0,9136230.0,SC RUN 18913 4#16,0:55 1:75,A:317259385;C:215602423;G:214339063;T:440303304;N:205725,55,75,,,317259385,215602423,214339063,440303304,205725,ERX1502392,ERS1021924,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29996,0.6286,0.18504,0.17927,0.95233,0.86062,0.5807,0.56479,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3116,ERR1432013,ERX1502391,ERS1021923,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool3,SAMEA3714774,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714774|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:09Z|INSDC status:public|Submitter Id:6b109b10 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCAGGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b109b10 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#15,15566077,Illumina sequencing of library 15566077  constructed from sample accession ERS1021923 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCAGGAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#15.cram,cram,1241517290.0,9550133.0,SC RUN 18913 4#15,0:55 1:75,A:327215004;C:237333883;G:227390823;T:449357212;N:220368,55,75,,,327215004,237333883,227390823,449357212,220368,ERX1502391,ERS1021923,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28117,0.60443,0.16535,0.15129,0.95294,0.86009,0.5843,0.55975,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3117,ERR1432012,ERX1502390,ERS1021922,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool2,SAMEA3714773,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714773|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:09Z|INSDC status:public|Submitter Id:6b0bb910 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCACGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b0bb910 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#14,15566076,Illumina sequencing of library 15566076  constructed from sample accession ERS1021922 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCTCACGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#14.cram,cram,1397300580.0,10748466.0,SC RUN 18913 4#14,0:55 1:75,A:362426897;C:260486836;G:258142402;T:515996372;N:248073,55,75,,,362426897,260486836,258142402,515996372,248073,ERX1502390,ERS1021922,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27877,0.63561,0.16174,0.15541,0.95345,0.85543,0.58634,0.58071,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3118,ERR1432011,ERX1502389,ERS1021921,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 pool1,SAMEA3714772,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714772|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:08Z|INSDC status:public|Submitter Id:6b06b000 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACTTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b06b000 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#13,15566075,Illumina sequencing of library 15566075  constructed from sample accession ERS1021921 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TACTTCGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#13.cram,cram,1862649750.0,14328075.0,SC RUN 18913 4#13,0:55 1:75,A:489495908;C:345054579;G:344508229;T:683258939;N:332095,55,75,,,489495908,345054579,344508229,683258939,332095,ERX1502389,ERS1021921,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26966,0.63802,0.15952,0.16077,0.95219,0.85602,0.59791,0.56518,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3119,ERR1432010,ERX1502388,ERS1021920,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 12,SAMEA3714771,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714771|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:07Z|INSDC status:public|Submitter Id:6b0158d0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGAACTGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6b0158d0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#12,15566074,Illumina sequencing of library 15566074  constructed from sample accession ERS1021920 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TGAACTGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#12.cram,cram,1372654660.0,10558882.0,SC RUN 18913 4#12,0:55 1:75,A:358301905;C:253415007;G:249067628;T:511625440;N:244680,55,75,,,358301905,253415007,249067628,511625440,244680,ERX1502388,ERS1021920,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27394,0.63277,0.17528,0.18627,0.95438,0.85261,0.56749,0.54563,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3120,ERR1432009,ERX1502387,ERS1021919,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 11,SAMEA3714770,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714770|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:07Z|INSDC status:public|Submitter Id:6afc28b0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGGTATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6afc28b0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#11,15566073,Illumina sequencing of library 15566073  constructed from sample accession ERS1021919 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TTGGTATG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#11.cram,cram,1337201580.0,10286166.0,SC RUN 18913 4#11,0:55 1:75,A:354199403;C:251071453;G:239475848;T:492219915;N:234961,55,75,,,354199403,251071453,239475848,492219915,234961,ERX1502387,ERS1021919,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28598,0.61386,0.17433,0.17929,0.94901,0.85593,0.57726,0.56383,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3121,ERR1432008,ERX1502386,ERS1021918,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 10,SAMEA3714769,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714769|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:07Z|INSDC status:public|Submitter Id:6af746b0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAACGCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6af746b0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#10,15566072,Illumina sequencing of library 15566072  constructed from sample accession ERS1021918 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TAACGCTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#10.cram,cram,1397497660.0,10749982.0,SC RUN 18913 4#10,0:55 1:75,A:367028924;C:255502167;G:253825377;T:520889419;N:251773,55,75,,,367028924,255502167,253825377,520889419,251773,ERX1502386,ERS1021918,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28076,0.62763,0.17278,0.18133,0.95331,0.85553,0.59244,0.57714,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3122,ERR1432007,ERX1502385,ERS1021917,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 9,SAMEA3714768,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714768|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:06Z|INSDC status:public|Submitter Id:6af23da0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGAAGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6af23da0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#9,15566071,Illumina sequencing of library 15566071  constructed from sample accession ERS1021917 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCGAAGTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#9.cram,cram,1225767920.0,9428984.0,SC RUN 18913 4#9,0:55 1:75,A:309872078;C:230598953;G:224148743;T:460928540;N:219606,55,75,,,309872078,230598953,224148743,460928540,219606,ERX1502385,ERS1021917,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26942,0.66213,0.14653,0.14991,0.95213,0.84549,0.52408,0.53104,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3123,ERR1432006,ERX1502384,ERS1021916,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 8,SAMEA3714767,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714767|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:06Z|INSDC status:public|Submitter Id:6aed5ba0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCCATTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6aed5ba0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#8,15566070,Illumina sequencing of library 15566070  constructed from sample accession ERS1021916 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TTCCATTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#8.cram,cram,1041956760.0,8015052.0,SC RUN 18913 4#8,0:55 1:75,A:265816503;C:196365622;G:194024876;T:385561361;N:188398,55,75,,,265816503,196365622,194024876,385561361,188398,ERX1502384,ERS1021916,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.24459,0.63837,0.13512,0.12978,0.95373,0.85415,0.54294,0.53256,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3124,ERR1432005,ERX1502383,ERS1021915,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 7,SAMEA3714766,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714766|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:05Z|INSDC status:public|Submitter Id:6ae85290 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGTCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6ae85290 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#7,15566069,Illumina sequencing of library 15566069  constructed from sample accession ERS1021915 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TAGTCTTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#7.cram,cram,1687717070.0,12982439.0,SC RUN 18913 4#7,0:55 1:75,A:444646536;C:308441661;G:305643085;T:628683125;N:302663,55,75,,,444646536,308441661,305643085,628683125,302663,ERX1502383,ERS1021915,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27909,0.66209,0.1681,0.17147,0.95398,0.85311,0.53088,0.55051,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3125,ERR1432004,ERX1502382,ERS1021914,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 6,SAMEA3714765,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714765|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:05Z|INSDC status:public|Submitter Id:6ae34980 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTGGTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6ae34980 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#6,15566068,Illumina sequencing of library 15566068  constructed from sample accession ERS1021914 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TGTGGTTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#6.cram,cram,1165013200.0,8961640.0,SC RUN 18913 4#6,0:55 1:75,A:298921426;C:224660026;G:214005145;T:427220436;N:206167,55,75,,,298921426,224660026,214005145,427220436,206167,ERX1502382,ERS1021914,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25071,0.65358,0.14429,0.14471,0.95201,0.8535,0.55728,0.55362,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3126,ERR1432003,ERX1502381,ERS1021913,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 5,SAMEA3714764,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714764|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:04Z|INSDC status:public|Submitter Id:6ade6780 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCTCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6ade6780 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#5,15566067,Illumina sequencing of library 15566067  constructed from sample accession ERS1021913 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TCCTCAAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#5.cram,cram,1504690330.0,11574541.0,SC RUN 18913 4#5,0:55 1:75,A:393565465;C:271137837;G:270167217;T:569552407;N:267404,55,75,,,393565465,271137837,270167217,569552407,267404,ERX1502381,ERS1021913,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26981,0.61888,0.16517,0.1601,0.95398,0.85397,0.46565,0.56192,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3127,ERR1432002,ERX1502380,ERS1021912,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 4,SAMEA3714763,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714763|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:04Z|INSDC status:public|Submitter Id:6ad98580 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACAGGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6ad98580 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#4,15566066,Illumina sequencing of library 15566066  constructed from sample accession ERS1021912 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TACAGGAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#4.cram,cram,1242950540.0,9561158.0,SC RUN 18913 4#4,0:55 1:75,A:325351346;C:224569458;G:224034580;T:468768412;N:226744,55,75,,,325351346,224569458,224034580,468768412,226744,ERX1502380,ERS1021912,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.30119,0.64115,0.16973,0.15867,0.95663,0.85494,0.65849,0.59085,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3128,ERR1432001,ERX1502379,ERS1021911,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 3,SAMEA3714762,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714762|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:03Z|INSDC status:public|Submitter Id:6ad4a380 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGTGACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6ad4a380 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#3,15566065,Illumina sequencing of library 15566065  constructed from sample accession ERS1021911 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TAGTGACT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#3.cram,cram,1243488350.0,9565295.0,SC RUN 18913 4#3,0:55 1:75,A:329922865;C:230543180;G:235624337;T:447171456;N:226512,55,75,,,329922865,230543180,235624337,447171456,226512,ERX1502379,ERS1021911,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26,0.62548,0.14472,0.1377,0.9586,0.86206,0.61902,0.58077,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3129,ERR1432000,ERX1502378,ERS1021910,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 2,SAMEA3714761,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714761|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:03Z|INSDC status:public|Submitter Id:6acf9a70 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCCTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6acf9a70 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#2,15566064,Illumina sequencing of library 15566064  constructed from sample accession ERS1021910 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TTCCTGCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#2.cram,cram,1337558950.0,10288915.0,SC RUN 18913 4#2,0:55 1:75,A:353512292;C:245610281;G:251201232;T:486996938;N:238207,55,75,,,353512292,245610281,251201232,486996938,238207,ERX1502378,ERS1021910,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.30057,0.63412,0.16356,0.17508,0.95166,0.85729,0.66407,0.41373,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3130,ERR1431999,ERX1502377,ERS1021909,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 125 1 1,SAMEA3714760,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714760|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:43:02Z|INSDC status:public|Submitter Id:6ac7d240 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 125 clutch 1  collected at segmentation   14   19 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCGATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:6ac7d240 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 4#1,15566063,Illumina sequencing of library 15566063  constructed from sample accession ERS1021909 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 4.  This submission includes reads tagged with the sequence TGCGATCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_4#1.cram,cram,1109032340.0,8531018.0,SC RUN 18913 4#1,0:55 1:75,A:294425516;C:200814157;G:201438507;T:412160735;N:193425,55,75,,,294425516,200814157,201438507,412160735,193425,ERX1502377,ERS1021909,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29905,0.62677,0.17132,0.17191,0.95521,0.85573,0.66986,0.5821,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3249,ERR1396985,ERX1468244,ERS1021861,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool12,SAMEA3714712,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714712|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:38Z|INSDC status:public|Submitter Id:1dcb91c0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTCTTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1dcb91c0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#24,15566015,Illumina sequencing of library 15566015  constructed from sample accession ERS1021861 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTCTTGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#24.cram,cram,944993140.0,7269178.0,SC RUN 18715 2#24,0:55 1:75,A:249673059;C:181220385;G:182892550;T:331185744;N:21402,55,75,,,249673059,181220385,182892550,331185744,21402,ERX1468244,ERS1021861,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29359,0.59475,0.14724,0.16297,0.95913,0.88339,0.6224,0.66608,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3250,ERR1396984,ERX1468243,ERS1021860,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool11,SAMEA3714711,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714711|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:37Z|INSDC status:public|Submitter Id:1dc59e50 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATTCATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1dc59e50 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#23,15566014,Illumina sequencing of library 15566014  constructed from sample accession ERS1021860 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GATTCATC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#23.cram,cram,1258811970.0,9683169.0,SC RUN 18715 2#23,0:55 1:75,A:335593067;C:228127907;G:234955385;T:460105666;N:29945,55,75,,,335593067,228127907,234955385,460105666,29945,ERX1468243,ERS1021860,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29232,0.60461,0.14863,0.15431,0.95757,0.87351,0.37007,0.67879,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3251,ERR1396983,ERX1468242,ERS1021859,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool10,SAMEA3714710,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714710|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:37Z|INSDC status:public|Submitter Id:1dbfd1f0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCTAACTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1dbfd1f0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#22,15566013,Illumina sequencing of library 15566013  constructed from sample accession ERS1021859 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCTAACTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#22.cram,cram,1608845940.0,12375738.0,SC RUN 18715 2#22,0:55 1:75,A:423702645;C:290141328;G:305337451;T:589625141;N:39375,55,75,,,423702645,290141328,305337451,589625141,39375,ERX1468242,ERS1021859,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28258,0.6164,0.1441,0.15015,0.95935,0.87582,0.75356,0.69317,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3252,ERR1396982,ERX1468241,ERS1021858,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool9,SAMEA3714709,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714709|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:36Z|INSDC status:public|Submitter Id:1dba0590 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCACTGTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1dba0590 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#21,15566012,Illumina sequencing of library 15566012  constructed from sample accession ERS1021858 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCACTGTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#21.cram,cram,1078644190.0,8297263.0,SC RUN 18715 2#21,0:55 1:75,A:287690536;C:196234637;G:202305985;T:392386871;N:26161,55,75,,,287690536,196234637,202305985,392386871,26161,ERX1468241,ERS1021858,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25945,0.59888,0.14917,0.16578,0.95901,0.87229,0.6499,0.65308,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3253,ERR1396981,ERX1468240,ERS1021857,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool8,SAMEA3714708,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714708|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:36Z|INSDC status:public|Submitter Id:1db41220 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCCTGTTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1db41220 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#20,15566011,Illumina sequencing of library 15566011  constructed from sample accession ERS1021857 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCCTGTTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#20.cram,cram,1859783640.0,14306028.0,SC RUN 18715 2#20,0:55 1:75,A:489272534;C:345708865;G:357163247;T:667593098;N:45896,55,75,,,489272534,345708865,357163247,667593098,45896,ERX1468240,ERS1021857,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26884,0.63739,0.14195,0.17448,0.95649,0.87292,0.69173,0.67006,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3254,ERR1396980,ERX1468239,ERS1021856,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool7,SAMEA3714707,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714707|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:35Z|INSDC status:public|Submitter Id:1dae45c0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GACCTTAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1dae45c0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#19,15566010,Illumina sequencing of library 15566010  constructed from sample accession ERS1021856 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GACCTTAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#19.cram,cram,1089029760.0,8377152.0,SC RUN 18715 2#19,0:55 1:75,A:279759309;C:206461444;G:224592663;T:378188858;N:27486,55,75,,,279759309,206461444,224592663,378188858,27486,ERX1468239,ERS1021856,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.24546,0.53623,0.147,0.14414,0.96092,0.88893,0.63655,0.58774,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3255,ERR1396979,ERX1468238,ERS1021855,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool6,SAMEA3714706,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714706|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:35Z|INSDC status:public|Submitter Id:1da85250 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCAATCCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1da85250 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#18,15566009,Illumina sequencing of library 15566009  constructed from sample accession ERS1021855 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCAATCCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#18.cram,cram,1529549710.0,11765767.0,SC RUN 18715 2#18,0:55 1:75,A:410716518;C:279356249;G:289999161;T:549441720;N:36062,55,75,,,410716518,279356249,289999161,549441720,36062,ERX1468238,ERS1021855,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25284,0.59443,0.14426,0.15212,0.95901,0.8775,0.66298,0.65063,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3256,ERR1396978,ERX1468237,ERS1021854,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool5,SAMEA3714705,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714705|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:34Z|INSDC status:public|Submitter Id:1da285f0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTGTGTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1da285f0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#17,15566008,Illumina sequencing of library 15566008  constructed from sample accession ERS1021854 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTGTGTCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#17.cram,cram,1396475600.0,10742120.0,SC RUN 18715 2#17,0:55 1:75,A:384590632;C:257481941;G:257546800;T:496822748;N:33479,55,75,,,384590632,257481941,257546800,496822748,33479,ERX1468237,ERS1021854,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27361,0.59703,0.16168,0.16158,0.95783,0.87487,0.66293,0.44792,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3257,ERR1396977,ERX1468236,ERS1021853,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool4,SAMEA3714704,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714704|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:34Z|INSDC status:public|Submitter Id:1d9cb990 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATAGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d9cb990 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#16,15566007,Illumina sequencing of library 15566007  constructed from sample accession ERS1021853 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GATAGAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#16.cram,cram,1038088350.0,7985295.0,SC RUN 18715 2#16,0:55 1:75,A:281465136;C:193875572;G:187090754;T:375632245;N:24643,55,75,,,281465136,193875572,187090754,375632245,24643,ERX1468236,ERS1021853,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25567,0.56828,0.1745,0.16705,0.96288,0.8804,0.58832,0.55842,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3258,ERR1396976,ERX1468235,ERS1021852,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool3,SAMEA3714703,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714703|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:33Z|INSDC status:public|Submitter Id:1d96c620 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGATTAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d96c620 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#15,15566006,Illumina sequencing of library 15566006  constructed from sample accession ERS1021852 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GGATTAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#15.cram,cram,1012521510.0,7788627.0,SC RUN 18715 2#15,0:55 1:75,A:273017045;C:191680068;G:184887041;T:362913670;N:23686,55,75,,,273017045,191680068,184887041,362913670,23686,ERX1468235,ERS1021852,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27542,0.5858,0.16245,0.16193,0.95913,0.88077,0.65817,0.65007,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3259,ERR1396975,ERX1468234,ERS1021851,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool2,SAMEA3714702,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714702|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:33Z|INSDC status:public|Submitter Id:1d90f9c0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTTGTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d90f9c0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#14,15566005,Illumina sequencing of library 15566005  constructed from sample accession ERS1021851 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTTGTCGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#14.cram,cram,1274963560.0,9807412.0,SC RUN 18715 2#14,0:55 1:75,A:347055771;C:246169303;G:246455254;T:435253782;N:29450,55,75,,,347055771,246169303,246455254,435253782,29450,ERX1468234,ERS1021851,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25468,0.59419,0.15364,0.16777,0.96171,0.88941,0.62807,0.65825,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3260,ERR1396974,ERX1468233,ERS1021850,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 pool1,SAMEA3714701,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714701|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:33Z|INSDC status:public|Submitter Id:1d8b2d60 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGGATGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d8b2d60 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#13,15566004,Illumina sequencing of library 15566004  constructed from sample accession ERS1021850 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GAGGATGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#13.cram,cram,813643480.0,6258796.0,SC RUN 18715 2#13,0:55 1:75,A:221395643;C:160336730;G:153525293;T:278366513;N:19301,55,75,,,221395643,160336730,153525293,278366513,19301,ERX1468233,ERS1021850,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.22556,0.50983,0.1562,0.18019,0.96629,0.89871,0.55232,0.55309,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3261,ERR1396973,ERX1468232,ERS1021849,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 12,SAMEA3714700,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714700|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:32Z|INSDC status:public|Submitter Id:1d8512e0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTAAGGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d8512e0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#12,15566003,Illumina sequencing of library 15566003  constructed from sample accession ERS1021849 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTAAGGTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#12.cram,cram,1133698670.0,8720759.0,SC RUN 18715 2#12,0:55 1:75,A:310685336;C:205786506;G:202529978;T:414670327;N:26523,55,75,,,310685336,205786506,202529978,414670327,26523,ERX1468232,ERS1021849,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26972,0.59573,0.17654,0.17225,0.95787,0.87006,0.60102,0.57986,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3262,ERR1396972,ERX1468231,ERS1021848,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 11,SAMEA3714699,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714699|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:31Z|INSDC status:public|Submitter Id:1d7f4680 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCTCCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d7f4680 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#11,15566002,Illumina sequencing of library 15566002  constructed from sample accession ERS1021848 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCTCCTTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#11.cram,cram,1510961530.0,11622781.0,SC RUN 18715 2#11,0:55 1:75,A:403357422;C:284015033;G:311968109;T:511583982;N:36984,55,75,,,403357422,284015033,311968109,511583982,36984,ERX1468231,ERS1021848,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2217,0.61864,0.12322,0.15269,0.96155,0.89739,0.68045,0.71552,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3263,ERR1396971,ERX1468230,ERS1021847,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 10,SAMEA3714698,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714698|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:31Z|INSDC status:public|Submitter Id:1d797a20 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGCCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d797a20 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#10,15566001,Illumina sequencing of library 15566001  constructed from sample accession ERS1021847 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GAGCCAAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#10.cram,cram,2253824560.0,17337112.0,SC RUN 18715 2#10,0:55 1:75,A:596195494;C:414435967;G:428296639;T:814840876;N:55584,55,75,,,596195494,414435967,428296639,814840876,55584,ERX1468230,ERS1021847,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25995,0.57788,0.15814,0.16689,0.96057,0.87728,0.62924,0.62522,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3264,ERR1396970,ERX1468229,ERS1021846,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 9,SAMEA3714697,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714697|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:30Z|INSDC status:public|Submitter Id:1d73adc0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGAATGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d73adc0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#9,15566000,Illumina sequencing of library 15566000  constructed from sample accession ERS1021846 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GGAATGAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#9.cram,cram,1230169200.0,9462840.0,SC RUN 18715 2#9,0:55 1:75,A:327476898;C:224850485;G:228553909;T:449259054;N:28854,55,75,,,327476898,224850485,228553909,449259054,28854,ERX1468229,ERS1021846,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28696,0.59128,0.14945,0.14145,0.95946,0.87734,0.7259,0.65948,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3265,ERR1396969,ERX1468228,ERS1021845,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 8,SAMEA3714696,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714696|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:30Z|INSDC status:public|Submitter Id:1d6dba50 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTCGCTAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d6dba50 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#8,15565999,Illumina sequencing of library 15565999  constructed from sample accession ERS1021845 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTCGCTAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#8.cram,cram,1455302680.0,11194636.0,SC RUN 18715 2#8,0:55 1:75,A:386389237;C:272791355;G:278743079;T:517344806;N:34203,55,75,,,386389237,272791355,278743079,517344806,34203,ERX1468228,ERS1021845,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26559,0.58684,0.14549,0.15344,0.96152,0.88773,0.67567,0.67071,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3266,ERR1396968,ERX1468227,ERS1021844,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 7,SAMEA3714695,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714695|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:29Z|INSDC status:public|Submitter Id:1d679fd0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTTAGCCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d679fd0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#7,15565998,Illumina sequencing of library 15565998  constructed from sample accession ERS1021844 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTTAGCCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#7.cram,cram,1479714860.0,11382422.0,SC RUN 18715 2#7,0:55 1:75,A:388470275;C:280903912;G:291321243;T:518983724;N:35706,55,75,,,388470275,280903912,291321243,518983724,35706,ERX1468227,ERS1021844,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2973,0.61627,0.13098,0.13726,0.96114,0.89016,0.75765,0.72987,55,75,B,B,mate1-mate2 similar by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3267,ERR1396967,ERX1468226,ERS1021843,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 6,SAMEA3714694,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714694|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:28Z|INSDC status:public|Submitter Id:1d622190 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCATGGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d622190 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#6,15565997,Illumina sequencing of library 15565997  constructed from sample accession ERS1021843 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCATGGCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#6.cram,cram,1641030040.0,12623308.0,SC RUN 18715 2#6,0:55 1:75,A:426771456;C:316461015;G:326534412;T:571223423;N:39734,55,75,,,426771456,316461015,326534412,571223423,39734,ERX1468226,ERS1021843,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29315,0.62192,0.14133,0.15876,0.96102,0.88767,0.76973,0.71859,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3268,ERR1396966,ERX1468225,ERS1021842,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 5,SAMEA3714693,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714693|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:28Z|INSDC status:public|Submitter Id:1d5cf170 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGGTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d5cf170 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#5,15565996,Illumina sequencing of library 15565996  constructed from sample accession ERS1021842 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GAGGTGCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#5.cram,cram,1339264290.0,10302033.0,SC RUN 18715 2#5,0:55 1:75,A:352232836;C:254135494;G:254699332;T:478165362;N:31266,55,75,,,352232836,254135494,254699332,478165362,31266,ERX1468225,ERS1021842,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2897,0.62178,0.14451,0.15424,0.95868,0.88511,0.72375,0.66838,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3269,ERR1396965,ERX1468224,ERS1021841,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 4,SAMEA3714692,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714692|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:27Z|INSDC status:public|Submitter Id:1d579a40 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTACATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d579a40 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#4,15565995,Illumina sequencing of library 15565995  constructed from sample accession ERS1021841 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GTACATCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#4.cram,cram,1368182530.0,10524481.0,SC RUN 18715 2#4,0:55 1:75,A:361403695;C:250638204;G:256805296;T:499301427;N:33908,55,75,,,361403695,250638204,256805296,499301427,33908,ERX1468224,ERS1021841,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27535,0.61613,0.14282,0.15096,0.96144,0.88365,0.74898,0.71714,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3270,ERR1396964,ERX1468223,ERS1021840,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 3,SAMEA3714691,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714691|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:27Z|INSDC status:public|Submitter Id:1d529130 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAATCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d529130 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#3,15565994,Illumina sequencing of library 15565994  constructed from sample accession ERS1021840 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GAATCTGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#3.cram,cram,1480243570.0,11386489.0,SC RUN 18715 2#3,0:55 1:75,A:391596854;C:275662595;G:280994362;T:531953932;N:35827,55,75,,,391596854,275662595,280994362,531953932,35827,ERX1468223,ERS1021840,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25524,0.62638,0.15438,0.18756,0.96069,0.88043,0.61584,0.44232,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3271,ERR1396963,ERX1468222,ERS1021839,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 2,SAMEA3714690,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714690|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:26Z|INSDC status:public|Submitter Id:1d4d12f0 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGTCGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d4d12f0 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#2,15565993,Illumina sequencing of library 15565993  constructed from sample accession ERS1021839 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GGTCGTGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#2.cram,cram,1364831780.0,10498706.0,SC RUN 18715 2#2,0:55 1:75,A:358929994;C:257978409;G:259021773;T:488870516;N:31088,55,75,,,358929994,257978409,259021773,488870516,31088,ERX1468222,ERS1021839,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27014,0.6295,0.15613,0.18391,0.96228,0.8812,0.60794,0.62834,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3272,ERR1396962,ERX1468221,ERS1021838,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 130 1 1,SAMEA3714689,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714689|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:25Z|INSDC status:public|Submitter Id:1d468340 a001 11e5 800b 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 130 clutch 1  collected at segmentation   1 4 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCAACATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:1d468340 a001 11e5 800b 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 2#1,15565992,Illumina sequencing of library 15565992  constructed from sample accession ERS1021838 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 2.  This submission includes reads tagged with the sequence GCAACATT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_2#1.cram,cram,1084455450.0,8341965.0,SC RUN 18715 2#1,0:55 1:75,A:295559877;C:193283678;G:201575232;T:394009368;N:27295,55,75,,,295559877,193283678,201575232,394009368,27295,ERX1468221,ERS1021838,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.24989,0.54482,0.15672,0.15429,0.96035,0.88481,0.59916,0.60974,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3297,ERR1396937,ERX1468196,ERS1021765,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool12,SAMEA3714616,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714616|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:45Z|INSDC status:public|Submitter Id:d3930c80 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GACGGATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3930c80 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#24,15565919,Illumina sequencing of library 15565919  constructed from sample accession ERS1021765 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence GACGGATT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#24.cram,cram,693657250.0,5335825.0,SC RUN 18685 8#24,0:55 1:75,A:179918224;C:126683031;G:123832192;T:263077608;N:146195,55,75,,,179918224,126683031,123832192,263077608,146195,ERX1468196,ERS1021765,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.30122,0.66397,0.19682,0.20192,0.95296,0.84713,0.49427,0.49795,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3298,ERR1396936,ERX1468195,ERS1021764,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool11,SAMEA3714615,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714615|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:45Z|INSDC status:public|Submitter Id:d38d4020 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTGTCCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d38d4020 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#23,15565918,Illumina sequencing of library 15565918  constructed from sample accession ERS1021764 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence GTGTCCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#23.cram,cram,1015056770.0,7808129.0,SC RUN 18685 8#23,0:55 1:75,A:270294796;C:186496475;G:187532107;T:370532123;N:201269,55,75,,,270294796,186496475,187532107,370532123,201269,ERX1468195,ERS1021764,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29812,0.65815,0.15837,0.17662,0.9457,0.86231,0.61441,0.57874,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3299,ERR1396935,ERX1468194,ERS1021763,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool10,SAMEA3714614,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714614|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:44Z|INSDC status:public|Submitter Id:d3821c90 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3821c90 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#22,15565917,Illumina sequencing of library 15565917  constructed from sample accession ERS1021763 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence GATCTCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#22.cram,cram,1350222770.0,10386329.0,SC RUN 18685 8#22,0:55 1:75,A:351976786;C:247870970;G:253471755;T:496623180;N:280079,55,75,,,351976786,247870970,253471755,496623180,280079,ERX1468194,ERS1021763,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28744,0.67614,0.15632,0.17193,0.94679,0.84833,0.65942,0.58666,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3300,ERR1396934,ERX1468193,ERS1021762,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool9,SAMEA3714613,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714613|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:43Z|INSDC status:public|Submitter Id:d37942f0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGTGAGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d37942f0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#21,15565916,Illumina sequencing of library 15565916  constructed from sample accession ERS1021762 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence GGTGAGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#21.cram,cram,1229784140.0,9459878.0,SC RUN 18685 8#21,0:55 1:75,A:321048931;C:232306567;G:231336124;T:444845787;N:246731,55,75,,,321048931,232306567,231336124,444845787,246731,ERX1468193,ERS1021762,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2833,0.66578,0.15593,0.16455,0.94872,0.85616,0.6452,0.58772,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3301,ERR1396933,ERX1468192,ERS1021761,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool8,SAMEA3714612,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714612|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:43Z|INSDC status:public|Submitter Id:d373c4b0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCGTGAA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d373c4b0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#20,15565915,Illumina sequencing of library 15565915  constructed from sample accession ERS1021761 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGCGTGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#20.cram,cram,1090740820.0,8390314.0,SC RUN 18685 8#20,0:55 1:75,A:284690477;C:202991634;G:198380177;T:404450150;N:228382,55,75,,,284690477,202991634,198380177,404450150,228382,ERX1468192,ERS1021761,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26662,0.64895,0.15927,0.17496,0.94604,0.84613,0.573,0.53579,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3302,ERR1396932,ERX1468191,ERS1021760,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool7,SAMEA3714611,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714611|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:42Z|INSDC status:public|Submitter Id:d36bae60 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACCACCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d36bae60 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#19,15565914,Illumina sequencing of library 15565914  constructed from sample accession ERS1021760 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TACCACCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#19.cram,cram,1245885810.0,9583737.0,SC RUN 18685 8#19,0:55 1:75,A:322552921;C:225820416;G:232640180;T:464607823;N:264470,55,75,,,322552921,225820416,232640180,464607823,264470,ERX1468191,ERS1021760,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28321,0.66888,0.16527,0.17214,0.94815,0.84709,0.6105,0.56176,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3303,ERR1396931,ERX1468190,ERS1021759,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool6,SAMEA3714610,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714610|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:42Z|INSDC status:public|Submitter Id:d3663020 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGAAGCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3663020 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#18,15565913,Illumina sequencing of library 15565913  constructed from sample accession ERS1021759 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGAAGCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#18.cram,cram,1339045760.0,10300352.0,SC RUN 18685 8#18,0:55 1:75,A:343203677;C:248714827;G:248913680;T:497922264;N:291312,55,75,,,343203677,248714827,248913680,497922264,291312,ERX1468190,ERS1021759,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26828,0.66909,0.15996,0.17605,0.94726,0.84544,0.57208,0.54188,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3304,ERR1396930,ERX1468189,ERS1021758,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool5,SAMEA3714609,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714609|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:41Z|INSDC status:public|Submitter Id:d35dcbb0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGTTCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d35dcbb0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#17,15565912,Illumina sequencing of library 15565912  constructed from sample accession ERS1021758 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TTGTTCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#17.cram,cram,934006450.0,7184665.0,SC RUN 18685 8#17,0:55 1:75,A:244823567;C:172608037;G:173167053;T:343215118;N:192675,55,75,,,244823567,172608037,173167053,343215118,192675,ERX1468189,ERS1021758,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2574,0.67587,0.15416,0.18219,0.94661,0.84336,0.58197,0.60884,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3305,ERR1396929,ERX1468188,ERS1021757,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool4,SAMEA3714608,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714608|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:41Z|INSDC status:public|Submitter Id:d3589b90 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCTTCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3589b90 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#16,15565911,Illumina sequencing of library 15565911  constructed from sample accession ERS1021757 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TCTCTTCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#16.cram,cram,1380458950.0,10618915.0,SC RUN 18685 8#16,0:55 1:75,A:348870972;C:269720545;G:276268703;T:485336489;N:262241,55,75,,,348870972,269720545,276268703,485336489,262241,ERX1468188,ERS1021757,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25564,0.71153,0.12991,0.16895,0.94535,0.84859,0.5492,0.50261,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3306,ERR1396928,ERX1468187,ERS1021756,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool3,SAMEA3714607,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714607|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:40Z|INSDC status:public|Submitter Id:d3531d50 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTGAAGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3531d50 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#15,15565910,Illumina sequencing of library 15565910  constructed from sample accession ERS1021756 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGTGAAGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#15.cram,cram,860776670.0,6621359.0,SC RUN 18685 8#15,0:55 1:75,A:231714930;C:160075045;G:156268852;T:312527542;N:190301,55,75,,,231714930,160075045,156268852,312527542,190301,ERX1468187,ERS1021756,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29984,0.64615,0.18248,0.21098,0.94598,0.84971,0.62676,0.58558,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3307,ERR1396927,ERX1468186,ERS1021755,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool2,SAMEA3714606,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714606|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:40Z|INSDC status:public|Submitter Id:d34cdbc0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGACGGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d34cdbc0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#14,15565909,Illumina sequencing of library 15565909  constructed from sample accession ERS1021755 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TAGACGGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#14.cram,cram,1502310940.0,11556238.0,SC RUN 18685 8#14,0:55 1:75,A:394441969;C:281076343;G:279286560;T:547179262;N:326806,55,75,,,394441969,281076343,279286560,547179262,326806,ERX1468186,ERS1021755,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2651,0.64737,0.163,0.18357,0.95051,0.85257,0.57519,0.56286,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3308,ERR1396926,ERX1468185,ERS1021754,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 pool1,SAMEA3714605,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714605|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:39Z|INSDC status:public|Submitter Id:d3478490 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCTGATA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3478490 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#13,15565908,Illumina sequencing of library 15565908  constructed from sample accession ERS1021754 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGCTGATA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#13.cram,cram,1364523420.0,10496334.0,SC RUN 18685 8#13,0:55 1:75,A:365465156;C:247483428;G:249665485;T:501616078;N:293273,55,75,,,365465156,247483428,249665485,501616078,293273,ERX1468185,ERS1021754,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26428,0.65145,0.17252,0.18669,0.95093,0.85139,0.54489,0.55163,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3309,ERR1396925,ERX1468184,ERS1021753,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 12,SAMEA3714604,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714604|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:39Z|INSDC status:public|Submitter Id:d341df40 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCATCCTA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d341df40 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#12,15565907,Illumina sequencing of library 15565907  constructed from sample accession ERS1021753 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TCATCCTA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#12.cram,cram,2004205450.0,15416965.0,SC RUN 18685 8#12,0:55 1:75,A:523787734;C:362032593;G:374386025;T:743587491;N:411607,55,75,,,523787734,362032593,374386025,743587491,411607,ERX1468184,ERS1021753,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.24705,0.66124,0.14581,0.16796,0.94992,0.84908,0.532,0.56539,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3310,ERR1396924,ERX1468183,ERS1021752,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 11,SAMEA3714603,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714603|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:38Z|INSDC status:public|Submitter Id:d33c6100 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGAACAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d33c6100 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#11,15565906,Illumina sequencing of library 15565906  constructed from sample accession ERS1021752 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TAGAACAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#11.cram,cram,1311252670.0,10086559.0,SC RUN 18685 8#11,0:55 1:75,A:345517863;C:237181863;G:240546931;T:487717775;N:288238,55,75,,,345517863,237181863,240546931,487717775,288238,ERX1468183,ERS1021752,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26678,0.64459,0.16454,0.18242,0.95361,0.85449,0.58621,0.59736,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3311,ERR1396923,ERX1468182,ERS1021751,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 10,SAMEA3714602,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714602|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:38Z|INSDC status:public|Submitter Id:d33730e0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACAGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d33730e0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#10,15565905,Illumina sequencing of library 15565905  constructed from sample accession ERS1021751 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGACAGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#10.cram,cram,2073344260.0,15948802.0,SC RUN 18685 8#10,0:55 1:75,A:517068157;C:392319562;G:435715245;T:727796105;N:445191,55,75,,,517068157,392319562,435715245,727796105,445191,ERX1468182,ERS1021751,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25558,0.65758,0.14925,0.19327,0.95134,0.85882,0.62274,0.60212,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3312,ERR1396922,ERX1468181,ERS1021750,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 9,SAMEA3714601,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714601|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:37Z|INSDC status:public|Submitter Id:d3318b90 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTACGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3318b90 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#9,15565904,Illumina sequencing of library 15565904  constructed from sample accession ERS1021750 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TCTACGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#9.cram,cram,1145235520.0,8809504.0,SC RUN 18685 8#9,0:55 1:75,A:297406789;C:209534095;G:212678486;T:425378143;N:238007,55,75,,,297406789,209534095,212678486,425378143,238007,ERX1468181,ERS1021750,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27841,0.66975,0.15879,0.17203,0.95233,0.8535,0.62683,0.59194,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3313,ERR1396921,ERX1468180,ERS1021749,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 8,SAMEA3714600,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714600|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:37Z|INSDC status:public|Submitter Id:d32c3460 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGCGTAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d32c3460 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#8,15565903,Illumina sequencing of library 15565903  constructed from sample accession ERS1021749 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TTGCGTAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#8.cram,cram,1036013680.0,7969336.0,SC RUN 18685 8#8,0:55 1:75,A:270057240;C:193747239;G:197353694;T:374642331;N:213176,55,75,,,270057240,193747239,197353694,374642331,213176,ERX1468180,ERS1021749,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25721,0.6499,0.16032,0.19823,0.9529,0.85311,0.59461,0.57264,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3314,ERR1396920,ERX1468179,ERS1021748,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 7,SAMEA3714599,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714599|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:36Z|INSDC status:public|Submitter Id:d326b620 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCGCACC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d326b620 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#7,15565902,Illumina sequencing of library 15565902  constructed from sample accession ERS1021748 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TTCGCACC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#7.cram,cram,1284328630.0,9879451.0,SC RUN 18685 8#7,0:55 1:75,A:332096697;C:235136325;G:242379114;T:474448611;N:267883,55,75,,,332096697,235136325,242379114,474448611,267883,ERX1468179,ERS1021748,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29592,0.68593,0.17008,0.17749,0.94959,0.85198,0.64257,0.44631,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3315,ERR1396919,ERX1468178,ERS1021747,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 6,SAMEA3714598,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714598|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:35Z|INSDC status:public|Submitter Id:d3209ba0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTTCTCC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3209ba0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#6,15565901,Illumina sequencing of library 15565901  constructed from sample accession ERS1021747 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGTTCTCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#6.cram,cram,1297484370.0,9980649.0,SC RUN 18685 8#6,0:55 1:75,A:338507928;C:240346554;G:249234355;T:469129747;N:265786,55,75,,,338507928,240346554,249234355,469129747,265786,ERX1468178,ERS1021747,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25977,0.68871,0.14096,0.17763,0.94852,0.84857,0.64848,0.62369,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3316,ERR1396918,ERX1468177,ERS1021746,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 5,SAMEA3714597,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714597|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:35Z|INSDC status:public|Submitter Id:d31af650 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACCGAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d31af650 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#5,15565900,Illumina sequencing of library 15565900  constructed from sample accession ERS1021746 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TACCGAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#5.cram,cram,986824670.0,7590959.0,SC RUN 18685 8#5,0:55 1:75,A:249503122;C:196194334;G:213094882;T:327836020;N:196312,55,75,,,249503122,196194334,213094882,327836020,196312,ERX1468177,ERS1021746,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2526,0.67788,0.14322,0.2068,0.95668,0.87036,0.62258,0.68424,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3317,ERR1396917,ERX1468176,ERS1021745,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 4,SAMEA3714596,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714596|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:34Z|INSDC status:public|Submitter Id:d3161450 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGTTAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3161450 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#4,15565899,Illumina sequencing of library 15565899  constructed from sample accession ERS1021745 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TCGTTAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#4.cram,cram,1101348690.0,8471913.0,SC RUN 18685 8#4,0:55 1:75,A:282360043;C:216564167;G:219798866;T:382400195;N:225419,55,75,,,282360043,216564167,219798866,382400195,225419,ERX1468176,ERS1021745,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28119,0.68853,0.14981,0.2038,0.94923,0.85764,0.60028,0.50153,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3318,ERR1396916,ERX1468175,ERS1021744,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 3,SAMEA3714595,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714595|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:34Z|INSDC status:public|Submitter Id:d3113250 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTACTCGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d3113250 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#3,15565898,Illumina sequencing of library 15565898  constructed from sample accession ERS1021744 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TTACTCGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#3.cram,cram,1071182580.0,8239866.0,SC RUN 18685 8#3,0:55 1:75,A:278951320;C:200221785;G:206354065;T:385437197;N:218213,55,75,,,278951320,200221785,206354065,385437197,218213,ERX1468175,ERS1021744,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26518,0.68368,0.14197,0.18007,0.95185,0.85261,0.66461,0.63107,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3319,ERR1396915,ERX1468174,ERS1021743,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 2,SAMEA3714594,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714594|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:33Z|INSDC status:public|Submitter Id:d30c7760 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TATGTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d30c7760 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#2,15565897,Illumina sequencing of library 15565897  constructed from sample accession ERS1021743 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TATGTGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#2.cram,cram,1463248930.0,11255761.0,SC RUN 18685 8#2,0:55 1:75,A:381661916;C:280547304;G:280208816;T:520534860;N:296034,55,75,,,381661916,280547304,280208816,520534860,296034,ERX1468174,ERS1021743,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28343,0.6634,0.17021,0.20633,0.94639,0.85109,0.59562,0.59876,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3320,ERR1396914,ERX1468173,ERS1021742,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 126 1 1,SAMEA3714593,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714593|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:33Z|INSDC status:public|Submitter Id:d2febbc0 9ffd 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 126 clutch 1  collected at segmentation   20 25 somites stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTCTATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:d2febbc0 9ffd 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18685 8#1,15565896,Illumina sequencing of library 15565896  constructed from sample accession ERS1021742 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18685 8.  This submission includes reads tagged with the sequence TGTCTATC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18685_8#1.cram,cram,1204458970.0,9265069.0,SC RUN 18685 8#1,0:55 1:75,A:328101517;C:210326014;G:210625317;T:455153517;N:252605,55,75,,,328101517,210326014,210625317,455153517,252605,ERX1468173,ERS1021742,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.30467,0.65801,0.19225,0.18964,0.95278,0.85395,0.647,0.61398,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Segmentation,Embryo,Whole Organism,All anatomical structures
3778,ERR1442910,ERX1513287,ERS1079231,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 F,SAMEA3892097,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892097|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:12Z|INSDC status:public|Submitter Id:74b7d970 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74b7d970 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#80,16564997,Illumina sequencing of library 16564997  constructed from sample accession ERS1079231 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTCGCTAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#80.cram,cram,367807000.0,1839035.0,SC RUN 19912 2#80,0:100 1:100,A:99853953;C:83521256;G:83092782;T:100734316;N:604693,100,100,,,99853953,83521256,83092782,100734316,604693,ERX1513287,ERS1079231,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95218,0.95429,0.14822,0.14496,0.73421,0.73551,0.52182,0.52074,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3779,ERR1442909,ERX1513286,ERS1079230,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 E,SAMEA3892096,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892096|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:11Z|INSDC status:public|Submitter Id:74ac19a0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74ac19a0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#79,16564985,Illumina sequencing of library 16564985  constructed from sample accession ERS1079230 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTTAGCCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#79.cram,cram,383458000.0,1917290.0,SC RUN 19912 2#79,0:100 1:100,A:103506303;C:87812410;G:87580208;T:103923002;N:636077,100,100,,,103506303,87812410,87580208,103923002,636077,ERX1513286,ERS1079230,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95233,0.95524,0.14578,0.14399,0.73119,0.73279,0.52246,0.5153,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3780,ERR1442908,ERX1513285,ERS1079229,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 D,SAMEA3892095,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892095|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74a032c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74a032c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#78,16564973,Illumina sequencing of library 16564973  constructed from sample accession ERS1079229 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GCATGGCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#78.cram,cram,305030200.0,1525151.0,SC RUN 19912 2#78,0:100 1:100,A:80789148;C:71536047;G:71230362;T:80996544;N:478099,100,100,,,80789148,71536047,71230362,80996544,478099,ERX1513285,ERS1079229,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95435,0.9576,0.15687,0.15568,0.7305,0.73074,0.53024,0.53045,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3781,ERR1442907,ERX1513284,ERS1079228,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 C,SAMEA3892094,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892094|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74944be0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74944be0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#77,16564961,Illumina sequencing of library 16564961  constructed from sample accession ERS1079228 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GAGGTGCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#77.cram,cram,315722000.0,1578610.0,SC RUN 19912 2#77,0:100 1:100,A:86027649;C:71216533;G:70871764;T:87099297;N:506757,100,100,,,86027649,71216533,70871764,87099297,506757,ERX1513284,ERS1079228,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94983,0.95227,0.15566,0.15125,0.73172,0.73261,0.51348,0.51111,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3782,ERR1442906,ERX1513283,ERS1079227,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 B,SAMEA3892093,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892093|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74888c10 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74888c10 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#76,16564949,Illumina sequencing of library 16564949  constructed from sample accession ERS1079227 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTACATCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#76.cram,cram,375205200.0,1876026.0,SC RUN 19912 2#76,0:100 1:100,A:100291147;C:86897383;G:86682905;T:100730941;N:602824,100,100,,,100291147,86897383,86682905,100730941,602824,ERX1513283,ERS1079227,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95487,0.9556,0.15028,0.14839,0.73322,0.73438,0.52087,0.51885,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3798,ERR1442890,ERX1513267,ERS1079207,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 F,SAMEA3892073,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892073|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:03Z|INSDC status:public|Submitter Id:73cb0870 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73cb0870 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#60,16564947,Illumina sequencing of library 16564947  constructed from sample accession ERS1079207 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TCATCCTA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#60.cram,cram,364728800.0,1823644.0,SC RUN 19912 2#60,0:100 1:100,A:98913529;C:82830570;G:82539236;T:99866236;N:579229,100,100,,,98913529,82830570,82539236,99866236,579229,ERX1513267,ERS1079207,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94934,0.95148,0.13746,0.13362,0.7124,0.71403,0.48477,0.48356,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3799,ERR1442889,ERX1513266,ERS1079206,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 E,SAMEA3892072,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892072|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:02Z|INSDC status:public|Submitter Id:73bf48a0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73bf48a0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#59,16564935,Illumina sequencing of library 16564935  constructed from sample accession ERS1079206 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TAGAACAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#59.cram,cram,320886600.0,1604433.0,SC RUN 19912 2#59,0:100 1:100,A:86512121;C:73419860;G:73166525;T:87287952;N:500142,100,100,,,86512121,73419860,73166525,87287952,500142,ERX1513266,ERS1079206,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95041,0.95298,0.13847,0.13504,0.71488,0.71547,0.50621,0.5108,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3800,ERR1442888,ERX1513265,ERS1079205,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 D,SAMEA3892071,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892071|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:02Z|INSDC status:public|Submitter Id:73b361c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73b361c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#58,16564923,Illumina sequencing of library 16564923  constructed from sample accession ERS1079205 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TGACAGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#58.cram,cram,384822600.0,1924113.0,SC RUN 19912 2#58,0:100 1:100,A:104678557;C:87061356;G:86724222;T:105745710;N:612755,100,100,,,104678557,87061356,86724222,105745710,612755,ERX1513265,ERS1079205,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94899,0.95173,0.14534,0.14119,0.71731,0.71762,0.50196,0.50147,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3801,ERR1442887,ERX1513264,ERS1079204,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 C,SAMEA3892070,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892070|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:01Z|INSDC status:public|Submitter Id:73a7a1f0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73a7a1f0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#57,16564911,Illumina sequencing of library 16564911  constructed from sample accession ERS1079204 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TCTACGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#57.cram,cram,353019600.0,1765098.0,SC RUN 19912 2#57,0:100 1:100,A:96310348;C:79652726;G:79289535;T:97202393;N:564598,100,100,,,96310348,79652726,79289535,97202393,564598,ERX1513264,ERS1079204,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94955,0.94441,0.16913,0.1618,0.72064,0.72165,0.51931,0.51542,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3802,ERR1442886,ERX1513263,ERS1079203,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 B,SAMEA3892069,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892069|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:01Z|INSDC status:public|Submitter Id:73902250 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73902250 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#56,16564994,Illumina sequencing of library 16564994  constructed from sample accession ERS1079203 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TTGCGTAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#56.cram,cram,331654600.0,1658273.0,SC RUN 19912 2#56,0:100 1:100,A:89792127;C:75012723;G:74697246;T:91627780;N:524724,100,100,,,89792127,75012723,74697246,91627780,524724,ERX1513263,ERS1079203,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95016,0.94969,0.15492,0.14751,0.72291,0.72383,0.51078,0.49997,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3803,ERR1442885,ERX1513262,ERS1079201,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 125 F,SAMEA3892067,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892067|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:00Z|INSDC status:public|Submitter Id:73843b70 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73843b70 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#55,16564982,Illumina sequencing of library 16564982  constructed from sample accession ERS1079201 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TTCGCACC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#55.cram,cram,360914400.0,1804572.0,SC RUN 19912 2#55,0:100 1:100,A:98581792;C:81250508;G:80843239;T:99666153;N:572708,100,100,,,98581792,81250508,80843239,99666153,572708,ERX1513262,ERS1079201,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94974,0.9518,0.13943,0.1351,0.72713,0.72835,0.51507,0.50947,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3804,ERR1442884,ERX1513261,ERS1079200,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 125 E,SAMEA3892066,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892066|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:00Z|INSDC status:public|Submitter Id:73787ba0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73787ba0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#54,16564970,Illumina sequencing of library 16564970  constructed from sample accession ERS1079200 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TGTTCTCC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#54.cram,cram,370878600.0,1854393.0,SC RUN 19912 2#54,0:100 1:100,A:100927203;C:83917132;G:83592661;T:101859436;N:582168,100,100,,,100927203,83917132,83592661,101859436,582168,ERX1513261,ERS1079200,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95178,0.95451,0.13457,0.13044,0.72831,0.72926,0.51735,0.51704,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3805,ERR1442883,ERX1513260,ERS1079199,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 125 D,SAMEA3892065,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892065|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:59Z|INSDC status:public|Submitter Id:736ce2e0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:736ce2e0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#53,16564958,Illumina sequencing of library 16564958  constructed from sample accession ERS1079199 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TACCGAGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#53.cram,cram,368319000.0,1841595.0,SC RUN 19912 2#53,0:100 1:100,A:101201423;C:82305203;G:81842564;T:102395868;N:573942,100,100,,,101201423,82305203,81842564,102395868,573942,ERX1513260,ERS1079199,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94847,0.95117,0.15361,0.14862,0.72667,0.72675,0.5038,0.51357,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3806,ERR1442882,ERX1513259,ERS1079198,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 125 C,SAMEA3892064,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892064|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:59Z|INSDC status:public|Submitter Id:73612310 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73612310 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#52,16564946,Illumina sequencing of library 16564946  constructed from sample accession ERS1079198 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TCGTTAGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#52.cram,cram,357688800.0,1788444.0,SC RUN 19912 2#52,0:100 1:100,A:98015942;C:80229200;G:79795251;T:99082184;N:566223,100,100,,,98015942,80229200,79795251,99082184,566223,ERX1513259,ERS1079198,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95184,0.95222,0.13789,0.13203,0.73227,0.73342,0.44721,0.45696,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3807,ERR1442881,ERX1513258,ERS1079197,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 125 B,SAMEA3892063,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:14 19 somites   ZFS:0000026|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892063|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:58Z|INSDC status:public|Submitter Id:73556340 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73556340 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#51,16564934,Illumina sequencing of library 16564934  constructed from sample accession ERS1079197 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TTACTCGC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#51.cram,cram,316602400.0,1583012.0,SC RUN 19912 2#51,0:100 1:100,A:86744885;C:71003727;G:70706588;T:87643532;N:503668,100,100,,,86744885,71003727,70706588,87643532,503668,ERX1513258,ERS1079197,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94844,0.95168,0.15492,0.15022,0.72916,0.7306,0.52135,0.52509,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3868,ERR1442820,ERX1513197,ERS1079231,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 F,SAMEA3892097,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892097|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:12Z|INSDC status:public|Submitter Id:74b7d970 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74b7d970 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#80,16564997,Illumina sequencing of library 16564997  constructed from sample accession ERS1079231 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTCGCTAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#80.cram,cram,366760400.0,1833802.0,SC RUN 19912 1#80,0:100 1:100,A:99595377;C:83305856;G:82890837;T:100449768;N:518562,100,100,,,99595377,83305856,82890837,100449768,518562,ERX1513197,ERS1079231,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95269,0.95187,0.1468,0.14355,0.73484,0.73551,0.5178,0.512,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3869,ERR1442819,ERX1513196,ERS1079230,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 E,SAMEA3892096,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892096|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:11Z|INSDC status:public|Submitter Id:74ac19a0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74ac19a0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#79,16564985,Illumina sequencing of library 16564985  constructed from sample accession ERS1079230 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTTAGCCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#79.cram,cram,382082600.0,1910413.0,SC RUN 19912 1#79,0:100 1:100,A:103181893;C:87532812;G:87294467;T:103539035;N:534393,100,100,,,103181893,87532812,87294467,103539035,534393,ERX1513196,ERS1079230,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95336,0.95588,0.1473,0.14654,0.7321,0.73476,0.51866,0.51115,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3870,ERR1442818,ERX1513195,ERS1079229,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 D,SAMEA3892095,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892095|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74a032c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74a032c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#78,16564973,Illumina sequencing of library 16564973  constructed from sample accession ERS1079229 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GCATGGCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#78.cram,cram,304583800.0,1522919.0,SC RUN 19912 1#78,0:100 1:100,A:80690767;C:71447063;G:71177771;T:80861322;N:406877,100,100,,,80690767,71447063,71177771,80861322,406877,ERX1513195,ERS1079229,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95528,0.95695,0.15713,0.15557,0.73087,0.73241,0.52967,0.52496,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3871,ERR1442817,ERX1513194,ERS1079228,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 C,SAMEA3892094,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892094|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74944be0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74944be0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#77,16564961,Illumina sequencing of library 16564961  constructed from sample accession ERS1079228 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GAGGTGCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#77.cram,cram,315677800.0,1578389.0,SC RUN 19912 1#77,0:100 1:100,A:86054254;C:71228614;G:70877172;T:87082385;N:435375,100,100,,,86054254,71228614,70877172,87082385,435375,ERX1513194,ERS1079228,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9499,0.95248,0.1555,0.15053,0.73046,0.73288,0.51914,0.52256,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3872,ERR1442816,ERX1513193,ERS1079227,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 130 B,SAMEA3892093,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:1 4 somites   ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892093|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74888c10 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74888c10 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#76,16564949,Illumina sequencing of library 16564949  constructed from sample accession ERS1079227 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTACATCT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#76.cram,cram,375030800.0,1875154.0,SC RUN 19912 1#76,0:100 1:100,A:100265448;C:86860270;G:86650668;T:100741321;N:513093,100,100,,,100265448,86860270,86650668,100741321,513093,ERX1513193,ERS1079227,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95388,0.95556,0.15063,0.14882,0.73198,0.73403,0.51813,0.51594,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3888,ERR1442800,ERX1513177,ERS1079207,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 F,SAMEA3892073,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892073|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:03Z|INSDC status:public|Submitter Id:73cb0870 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73cb0870 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#60,16564947,Illumina sequencing of library 16564947  constructed from sample accession ERS1079207 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence TCATCCTA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#60.cram,cram,363819200.0,1819096.0,SC RUN 19912 1#60,0:100 1:100,A:98691813;C:82652095;G:82386717;T:99591347;N:497228,100,100,,,98691813,82652095,82386717,99591347,497228,ERX1513177,ERS1079207,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94915,0.95109,0.13777,0.13427,0.71358,0.71632,0.49983,0.50079,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3889,ERR1442799,ERX1513176,ERS1079206,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 E,SAMEA3892072,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892072|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:02Z|INSDC status:public|Submitter Id:73bf48a0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73bf48a0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#59,16564935,Illumina sequencing of library 16564935  constructed from sample accession ERS1079206 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence TAGAACAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#59.cram,cram,320418400.0,1602092.0,SC RUN 19912 1#59,,,,,,,,,,,,ERX1513176,ERS1079206,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.92846,0.91921,0.14054,0.13387,0.71265,0.71185,0.49317,0.50184,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3890,ERR1442798,ERX1513175,ERS1079205,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 D,SAMEA3892071,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892071|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:02Z|INSDC status:public|Submitter Id:73b361c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73b361c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#58,16564923,Illumina sequencing of library 16564923  constructed from sample accession ERS1079205 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence TGACAGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#58.cram,cram,384118000.0,1920590.0,SC RUN 19912 1#58,0:100 1:100,A:104518496;C:86943241;G:86611468;T:105527558;N:517237,100,100,,,104518496,86943241,86611468,105527558,517237,ERX1513175,ERS1079205,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94952,0.95138,0.1455,0.14161,0.71685,0.71739,0.50318,0.50241,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures
3891,ERR1442797,ERX1513174,ERS1079204,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 126 C,SAMEA3892070,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Segmentation:20 25 somites   ZFS:0000027|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892070|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:01Z|INSDC status:public|Submitter Id:73a7a1f0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73a7a1f0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#57,16564911,Illumina sequencing of library 16564911  constructed from sample accession ERS1079204 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence TCTACGAC.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#57.cram,cram,353133000.0,1765665.0,SC RUN 19912 1#57,0:100 1:100,A:96375357;C:79690751;G:79360743;T:97224358;N:481791,100,100,,,96375357,79690751,79360743,97224358,481791,ERX1513174,ERS1079204,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.94988,0.94756,0.16725,0.16188,0.7209,0.722,0.51314,0.51544,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Segmentation,Embryo,Whole Organism,All anatomical structures