rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
48726,SRR7789580,SRX4644423,SRS3742493,SRP159670,PRJNA475635,Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis,PRJNA475635,Other,The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.,,,,,TDCIPP 12hpf 3 S18,,strain:5D|isolate:108|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,TDCIPP 12hpf 3 S18,TDCIPP 12hpf 3 S18,TDCIPP 12hpf 3 S18,Nextera XT DNA Library Prep kit,,,AMPLICON,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiniSeq,,SRP159670,,,TDCIPP-12hpf-3_S18_L001_R2_001.fastq.gz TDCIPP-12hpf-3_S18_L001_R1_001.fastq.gz,fastq fastq,103340472.0,472844.0,TDCIPP 12hpf 3 S18 L001 R1 001.fastq.gz,0:109.23 1:109.32,A:26737838;C:24795090;G:24934613;T:26529096;N:343835,109,109,,,26737838,24795090,24934613,26529096,343835,SRX4644423,SRS3742493,SRA767209,"University of California, Riverside|Environmental Sciences","University of California, Riverside",2,0.95154,0.95221,0.00019,0.00019,0.99922,0.99924,0.41074,0.41244,121,121,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,nextera,bulk,unknown,unknown,,United States,2018-09-05,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
48727,SRR7789581,SRX4644422,SRS3742492,SRP159670,PRJNA475635,Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis,PRJNA475635,Other,The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.,,,,,TDCIPP 12hpf 2 S17,,strain:5D|isolate:107|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,TDCIPP 12hpf 2 S17,TDCIPP 12hpf 2 S17,TDCIPP 12hpf 2 S17,Nextera XT DNA Library Prep kit,,,AMPLICON,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiniSeq,,SRP159670,,,TDCIPP-12hpf-2_S17_L001_R1_001.fastq.gz TDCIPP-12hpf-2_S17_L001_R2_001.fastq.gz,fastq fastq,127382315.0,575073.0,TDCIPP 12hpf 2 S17 L001 R1 001.fastq.gz,0:110.70 1:110.81,A:32604644;C:30882861;G:31076792;T:32385804;N:432214,110,110,,,32604644,30882861,31076792,32385804,432214,SRX4644422,SRS3742492,SRA767209,"University of California, Riverside|Environmental Sciences","University of California, Riverside",2,0.94383,0.94386,0.00021,0.00022,0.99926,0.99926,0.41023,0.38711,151,151,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,nextera,bulk,unknown,unknown,,United States,2018-09-05,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
48728,SRR7789582,SRX4644421,SRS3742490,SRP159670,PRJNA475635,Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis,PRJNA475635,Other,The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.,,,,,TDCIPP 12hpf 1 S16,,strain:5D|isolate:106|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,TDCIPP 12hpf 1 S16,TDCIPP 12hpf 1 S16,TDCIPP 12hpf 1 S16,Nextera XT DNA Library Prep kit,,,AMPLICON,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiniSeq,,SRP159670,,,TDCIPP-12hpf-1_S16_L001_R1_001.fastq.gz TDCIPP-12hpf-1_S16_L001_R2_001.fastq.gz,fastq fastq,106771425.0,482515.0,TDCIPP 12hpf 1 S16 L001 R1 001.fastq.gz,0:110.59 1:110.69,A:27853264;C:25384933;G:25518809;T:27629968;N:384451,110,110,,,27853264,25384933,25518809,27629968,384451,SRX4644421,SRS3742490,SRA767209,"University of California, Riverside|Environmental Sciences","University of California, Riverside",2,0.95913,0.95873,0.00021,0.00025,0.99928,0.99928,0.4122,0.39928,79,79,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,nextera,bulk,unknown,unknown,,United States,2018-09-05,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
48729,SRR7789583,SRX4644420,SRS3742491,SRP159670,PRJNA475635,Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis,PRJNA475635,Other,The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.,,,,,DMSO 12hpf 3 S9x,,strain:5D|isolate:105|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DMSO 12hpf 3 S9x,DMSO 12hpf 3 S9x,DMSO 12hpf 3 S9x,Nextera XT DNA Library Prep kit,,,AMPLICON,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiniSeq,,SRP159670,,,DMSO-12hpf-3_S9x_L001_R2_001.fastq.gz DMSO-12hpf-3_S9x_L001_R1_001.fastq.gz,fastq fastq,106526213.0,483892.0,DMSO 12hpf 3 S9x L001 R2 001.fastq.gz,0:110.00 1:110.14,A:27523846;C:25609135;G:25786277;T:27228622;N:378333,110,110,,,27523846,25609135,25786277,27228622,378333,SRX4644420,SRS3742491,SRA767209,"University of California, Riverside|Environmental Sciences","University of California, Riverside",2,0.95736,0.95668,0.00013,0.00011,0.99924,0.99926,0.45348,0.45617,77,77,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,nextera,bulk,unknown,unknown,,United States,2018-09-05,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
48730,SRR7789584,SRX4644419,SRS3742489,SRP159670,PRJNA475635,Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis,PRJNA475635,Other,The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.,,,,,DMSO 12hpf 2 S8,,strain:5D|isolate:104|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DMSO 12hpf 2 S8,DMSO 12hpf 2 S8,DMSO 12hpf 2 S8,Nextera XT DNA Library Prep kit,,,AMPLICON,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiniSeq,,SRP159670,,,DMSO-12hpf-2_S8_L001_R1_001.fastq.gz DMSO-12hpf-2_S8_L001_R2_001.fastq.gz,fastq fastq,126754105.0,599652.0,DMSO 12hpf 2 S8 L001 R1 001.fastq.gz,0:105.62 1:105.76,A:32875248;C:30352965;G:30543115;T:32575671;N:407106,105,105,,,32875248,30352965,30543115,32575671,407106,SRX4644419,SRS3742489,SRA767209,"University of California, Riverside|Environmental Sciences","University of California, Riverside",2,0.9631,0.96229,0.00019,0.00019,0.99928,0.99928,0.45939,0.44598,92,92,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,nextera,bulk,unknown,unknown,,United States,2018-09-05,Segmentation,Embryo,Embryo Imprecise,All anatomical structures
48731,SRR7789585,SRX4644418,SRS3742488,SRP159670,PRJNA475635,Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis,PRJNA475635,Other,The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.,,,,,DMSO 12hpf 1 S7,,strain:5D|isolate:103|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DMSO 12hpf 1 S7,DMSO 12hpf 1 S7,DMSO 12hpf 1 S7,Nextera XT DNA Library Prep kit,,,AMPLICON,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiniSeq,,SRP159670,,,DMSO-12hpf-1_S7_L001_R2_001.fastq.gz DMSO-12hpf-1_S7_L001_R1_001.fastq.gz,fastq fastq,133973234.0,626692.0,DMSO 12hpf 1 S7 L001 R1 001.fastq.gz,0:106.86 1:106.92,A:34741794;C:32048895;G:32233963;T:34368689;N:579893,106,106,,,34741794,32048895,32233963,34368689,579893,SRX4644418,SRS3742488,SRA767209,"University of California, Riverside|Environmental Sciences","University of California, Riverside",2,0.961,0.9606,0.0002,0.00021,0.99928,0.99928,0.47357,0.45763,74,74,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,nextera,bulk,unknown,unknown,,United States,2018-09-05,Segmentation,Embryo,Embryo Imprecise,All anatomical structures