rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
31884,SRR28747851,SRX24313483,SRS21075233,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf  Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish control  sample3,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish control 3,Ctrl 3,Ctrl 3,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,Ctrl-3_S26_L004_R2_001.fastq.gz Ctrl-3_S26_L004_R1_001.fastq.gz,fastq fastq,6658139400.0,22193798.0,Ctrl 3 S26 L004 R1 001.fastq.gz,0:150 1:150,A:1953050910;C:1380426193;G:1413459206;T:1911166654;N:36437,150,150,,,1953050910,1380426193,1413459206,1911166654,36437,SRX24313483,SRS21075233,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.94694,0.94695,0.14305,0.14206,0.70412,0.70473,0.59878,0.59922,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures
31885,SRR28747852,SRX24313482,SRS21075231,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf  Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish control  sample2,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish control 2,Ctrl 2,Ctrl 2,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,Ctrl-2_S25_L004_R1_001.fastq.gz Ctrl-2_S25_L004_R2_001.fastq.gz,fastq fastq,7515161100.0,25050537.0,Ctrl 2 S25 L004 R1 001.fastq.gz,0:150 1:150,A:2218032458;C:1545198589;G:1580900913;T:2170988635;N:40505,150,150,,,2218032458,1545198589,1580900913,2170988635,40505,SRX24313482,SRS21075231,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.94205,0.94032,0.15138,0.15085,0.69578,0.69645,0.5641,0.56481,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures
31886,SRR28747853,SRX24313481,SRS21075234,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf  Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish control  sample1,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish control 1,Ctrl 1,Ctrl 1,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,Ctrl-1_S24_L004_R1_001.fastq.gz Ctrl-1_S24_L004_R2_001.fastq.gz,fastq fastq,9747041100.0,32490137.0,Ctrl 1 S24 L004 R1 001.fastq.gz,0:150 1:150,A:2863031605;C:2014131410;G:2067943208;T:2801881561;N:53316,150,150,,,2863031605,2014131410,2067943208,2801881561,53316,SRX24313481,SRS21075234,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.94378,0.94419,0.14935,0.14934,0.70749,0.7069,0.60161,0.59912,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures
31887,SRR28747854,SRX24313480,SRS21075232,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf  Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish  4 octyl itaconate  sample3,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish  4 octyl itaconate 3,4OI 3,4OI 3,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,4OI-3_S23_L004_R1_001.fastq.gz 4OI-3_S23_L004_R2_001.fastq.gz,fastq fastq,8273990400.0,27579968.0,4OI 3 S23 L004 R1 001.fastq.gz,0:150 1:150,A:2162937415;C:1975194532;G:2012089890;T:2123723196;N:45367,150,150,,,2162937415,1975194532,2012089890,2123723196,45367,SRX24313480,SRS21075232,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.96535,0.96542,0.03083,0.03097,0.71279,0.71295,0.48276,0.47927,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures
31888,SRR28747855,SRX24313479,SRS21075230,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf  Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish  4 octyl itaconate  sample2,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish  4 octyl itaconate 2,4OI 2,4OI 2,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,4OI-2_S28_L003_R1_001.fastq.gz 4OI-2_S28_L003_R2_001.fastq.gz,fastq fastq,6579714300.0,21932381.0,4OI 2 S28 L003 R1 001.fastq.gz,0:150 1:150,A:1710345718;C:1580260893;G:1608081826;T:1680921918;N:103945,150,150,,,1710345718,1580260893,1608081826,1680921918,103945,SRX24313479,SRS21075230,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.96511,0.96418,0.03843,0.0384,0.70179,0.7027,0.49174,0.5066,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures
31889,SRR28747856,SRX24313478,SRS21075229,SRP502930,PRJNA1102048,Danio rerio Raw sequence reads,PRJNA1102048,Whole Genome Sequencing,This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf  Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis.,,,,Model organism or animal sample from Danio rerio,Zebrafish  4 octyl itaconate  sample1,,strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal,,,,,,,,,Zebrafish  4 octyl itaconate 1,4OI 1,4OI 1,DNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP502930,,,4OI-1_S27_L003_R1_001.fastq.gz 4OI-1_S27_L003_R2_001.fastq.gz,fastq fastq,7099570500.0,23665235.0,4OI 1 S27 L003 R1 001.fastq.gz,0:150 1:150,A:1858012411;C:1693592911;G:1723374425;T:1824476953;N:113800,150,150,,,1858012411,1693592911,1723374425,1824476953,113800,SRX24313478,SRS21075229,SRA1849567,Nantong University|Institute of Special Environmental Medicine,Nantong University,2,0.96619,0.96559,0.04154,0.04152,0.70386,0.70412,0.48321,0.49372,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-04-19,Larval,Larval,Whole Organism,All anatomical structures
32617,SRR29366294,SRX24880743,SRS21589520,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,NPs4,,strain:TU|isolate:NPs4|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs4,NPs4,A total amount of 9 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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 x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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 x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0022_good_1.fq.gz Unknown_BO623-04T0022_good_2.fq.gz,fastq fastq,6748273836.0,22592809.0,Unknown BO623 04T0022 good 1.fq.gz,0:149.35 1:149.35,A:1774719919;C:1597377190;G:1614927098;T:1761071358;N:178271,149,149,,,1774719919,1597377190,1614927098,1761071358,178271,SRX24880743,SRS21589520,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32618,SRR29366295,SRX24880742,SRS21589518,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,NPs3,,strain:TU|isolate:NPs3|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs3,NPs3,A total amount of 8 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0021_good_1.fq.gz Unknown_BO623-04T0021_good_2.fq.gz,fastq fastq,6529485490.0,21847936.0,Unknown BO623 04T0021 good 1.fq.gz,0:149.43 1:149.43,A:1717039978;C:1547743896;G:1563982349;T:1700522682;N:196585,149,149,,,1717039978,1547743896,1563982349,1700522682,196585,SRX24880742,SRS21589518,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32619,SRR29366296,SRX24880741,SRS21589519,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,NPs2,,strain:TU|isolate:NPs2|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs2,NPs2,A total amount of 7 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0020_good_1.fq.gz Unknown_BO623-04T0020_good_2.fq.gz,fastq fastq,6699049910.0,22407080.0,Unknown BO623 04T0020 good 1.fq.gz,0:149.49 1:149.49,A:1761959579;C:1586799482;G:1603631340;T:1746520369;N:139140,149,149,,,1761959579,1586799482,1603631340,1746520369,139140,SRX24880741,SRS21589519,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32620,SRR29366297,SRX24880740,SRS21589517,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,NPs1,,strain:TU|isolate:NPs1|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs1,NPs1,A total amount of 6 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0019_good_1.fq.gz Unknown_BO623-04T0019_good_2.fq.gz,fastq fastq,6132468788.0,20516184.0,Unknown BO623 04T0019 good 1.fq.gz,0:149.45 1:149.45,A:1607332987;C:1458658424;G:1471957341;T:1594421337;N:98699,149,149,,,1607332987,1458658424,1471957341,1594421337,98699,SRX24880740,SRS21589517,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32621,SRR29366298,SRX24880739,SRS21589516,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,C6,,strain:TU|isolate:Control6|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C6,C6,A total amount of 5 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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 x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0018_good_1.fq.gz Unknown_BO623-04T0018_good_2.fq.gz,fastq fastq,5940082248.0,19857041.0,Unknown BO623 04T0018 good 1.fq.gz,0:149.57 1:149.57,A:1533707674;C:1435538751;G:1452812826;T:1517833025;N:189972,149,149,,,1533707674,1435538751,1452812826,1517833025,189972,SRX24880739,SRS21589516,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32622,SRR29366299,SRX24880738,SRS21589515,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,C5,,strain:TU|isolate:Control5|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C5,C5,A total amount of 4 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0017_good_1.fq.gz Unknown_BO623-04T0017_good_2.fq.gz,fastq fastq,6758002932.0,22599590.0,Unknown BO623 04T0017 good 1.fq.gz,0:149.52 1:149.52,A:1739766340;C:1637642157;G:1652002401;T:1728330255;N:261779,149,149,,,1739766340,1637642157,1652002401,1728330255,261779,SRX24880738,SRS21589515,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32623,SRR29366300,SRX24880737,SRS21589514,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,C4,,strain:TU|isolate:Control4|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C4,C4,A total amount of 3 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0016_good_1.fq.gz Unknown_BO623-04T0016_good_2.fq.gz,fastq fastq,6210972784.0,20767744.0,Unknown BO623 04T0016 good 1.fq.gz,0:149.53 1:149.53,A:1591917700;C:1506245368;G:1529628371;T:1583090947;N:90398,149,149,,,1591917700,1506245368,1529628371,1583090947,90398,SRX24880737,SRS21589514,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32624,SRR29366301,SRX24880736,SRS21589513,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,C3,,strain:TU|isolate:Control3|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C3,C3,A total amount of 2 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0015_good_1.fq.gz Unknown_BO623-04T0015_good_2.fq.gz,fastq fastq,6666249022.0,22284306.0,Unknown BO623 04T0015 good 1.fq.gz,0:149.57 1:149.57,A:1722337869;C:1610144787;G:1630507947;T:1703082771;N:175648,149,149,,,1722337869,1610144787,1630507947,1703082771,175648,SRX24880736,SRS21589513,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32625,SRR29366302,SRX24880735,SRS21589512,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,NPs6,,strain:TU|isolate:NPs6|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs6,NPs6,A total amount of11 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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 x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0024_good_1.fq.gz Unknown_BO623-04T0024_good_2.fq.gz,fastq fastq,6819262402.0,22797722.0,Unknown BO623 04T0024 good 1.fq.gz,0:149.56 1:149.56,A:1781861689;C:1629655448;G:1645382478;T:1762184452;N:178335,149,149,,,1781861689,1629655448,1645382478,1762184452,178335,SRX24880735,SRS21589512,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32626,SRR29366303,SRX24880734,SRS21589511,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,NPs5,,strain:TU|isolate:NPs5|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,NPs5,NPs5,A total amount of10 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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 x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 R products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0023_good_1.fq.gz Unknown_BO623-04T0023_good_2.fq.gz,fastq fastq,6773730348.0,22673915.0,Unknown BO623 04T0023 good 1.fq.gz,0:149.37 1:149.37,A:1779182337;C:1607164031;G:1624141377;T:1763062617;N:179986,149,149,,,1779182337,1607164031,1624141377,1763062617,179986,SRX24880734,SRS21589511,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32627,SRR29366304,SRX24880733,SRS21589509,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,C2,,strain:TU|isolate:Control2|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C2,C2,A total amount of 1 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following manufacturers recommendations and index codes were added to attribute sequences to each sample. Briefly  mRNA was purified from total RNA using poly T oligo attached magnetic beads.First strand cDNA was synthesized and second strand cDNA synthesis was subsequently performed. Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. post adenylation of 3 ends of DNA fragments  NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. The library fragments were purified with AMPure XP system Beckman Coulter  Beverly  USA. Then 3 l USER Enzyme NEB  USA was used with size selected  adaptor ligated cDNA at 37C for 15 min followed by 5 min at 95C before PCR. Then PCR was performed with Phusion High Fidelity DNA polymerase  Universal PCR primers and Index X Primer. At last  PCR products were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0014_good_1.fq.gz Unknown_BO623-04T0014_good_2.fq.gz,fastq fastq,6805354296.0,22755187.0,Unknown BO623 04T0014 good 1.fq.gz,0:149.53 1:149.53,A:1742825793;C:1651738009;G:1677448209;T:1733168084;N:174201,149,149,,,1742825793,1651738009,1677448209,1733168084,174201,SRX24880733,SRS21589509,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,nebnext,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
32628,SRR29366305,SRX24880732,SRS21589510,SRP513315,PRJNA1122875,Transcriptome of zebrafish Danio rerio larvae exposed to MPs at xxx dpf,PRJNA1122875,Other,This study aims to figure out the NPs toxicity on zebrafish at early stages  especially on visual system development.,,,,,C1,,strain:TU|isolate:Control1|age:5dpf|collection date:2023 07 30|geo loc name:China:Zhejiang|sex:pooled male and female|tissue:the front part of larvae|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish larvae,C1,C1,A total amount of 0 g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using Hieff NGS Ultima Dual mode mRNA Library Prep Kit for Illumina Yeasen Biotechnology Shanghai Co.  Ltd. following x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000  x0000 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were purified AMPure XP system and library quality was assessed on the Agilent Bioanalyzer 2100 system.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP513315,,,Unknown_BO623-04T0013_good_1.fq.gz Unknown_BO623-04T0013_good_2.fq.gz,fastq fastq,6546144006.0,21896126.0,Unknown BO623 04T0013 good 1.fq.gz,0:149.48 1:149.48,A:1688579059;C:1582023304;G:1598552166;T:1676633897;N:355580,149,149,,,1688579059,1582023304,1598552166,1676633897,355580,SRX24880732,SRS21589510,SRA1896007,Zhejiang University|College of Animal Science,Zhejiang University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-06-11,Larval,Larval,Whole Organism,All anatomical structures
33369,SRR30159204,SRX25626516,SRS22271512,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Mutant 2,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.8 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Mutant 2,Li lab 003 4,Li lab 003 4,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 6 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,7c166f592635e7a5f904d56dd661e1cc mut-2_1.fq.gz.gz 3adc1733ac4cb77beca49461cb17544b mut-2_2.fq.gz.gz,fastq fastq,5518961400.0,18396538.0,3adc1733ac4cb77beca49461cb17544b mut 2 2.fq.gz.gz,0:150 1:150,A:1469924277;C:1285547670;G:1307420673;T:1455990444;N:78336,150,150,,,1469924277,1285547670,1307420673,1455990444,78336,SRX25626516,SRS22271512,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.96085,0.95919,0.05548,0.05519,0.7207,0.72178,0.47759,0.47549,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined
33370,SRR30159205,SRX25626515,SRS22271511,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Mutant 1,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.7 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Mutant 1,Li lab 003 3,Li lab 003 3,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 5 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,39cb7947119cec5afac3df66c0ae0048 mut-1_1.fq.gz.gz 1bfc59902758bb1cbf8eb4549d3375fd mut-1_2.fq.gz.gz,fastq fastq,5947120500.0,19823735.0,1bfc59902758bb1cbf8eb4549d3375fd mut 1 2.fq.gz.gz,0:150 1:150,A:1567673549;C:1401761128;G:1423907629;T:1553701047;N:77147,150,150,,,1567673549,1401761128,1423907629,1553701047,77147,SRX25626515,SRS22271511,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.96303,0.96203,0.05003,0.04984,0.72271,0.72299,0.47608,0.47831,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined
33371,SRR30159206,SRX25626514,SRS22271510,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Wild type 2,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.6 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Wild type 2,Li lab 003 2,Li lab 003 2,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 4 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,4376e7007befe0cf23ffa7f9dd62512c sib-3_1.fq.gz.gz da4d46fd26ca22e90409489640659b1c sib-3_2.fq.gz.gz,fastq fastq,6113935200.0,20379784.0,4376e7007befe0cf23ffa7f9dd62512c sib 3 1.fq.gz.gz,0:150 1:150,A:1609711214;C:1443384557;G:1461871812;T:1598876167;N:91450,150,150,,,1609711214,1443384557,1461871812,1598876167,91450,SRX25626514,SRS22271510,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.95947,0.9591,0.04902,0.0492,0.71707,0.71796,0.46871,0.4604,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined
33372,SRR30159207,SRX25626513,SRS22271509,SRP524652,PRJNA1145276,The RNA sequence analysis post lossing tango6,PRJNA1145276,Other,To detect RNA expression level difference post lost of TANGO6,,,,,Wild type 1,,strain:AB|isolate:trizol extraction|breed:standard breed|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:3.5 dpf|collection date:2024 02 04|geo loc name:not collected|sex:not collected|tissue:CHT|BioSampleModel:Model organism or animal,,,,,,,,,Wild type 1,Li lab 003 1,Li lab 003 1,RNA was harvested using RNeasy Mini Kit Qiagen PureLink RNA Mini Kit Thermo. 1.5 3 g of total RNA was used for construction of sequencing libraries.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP524652,,,319b2e8b61305a8937eb903a7a20a2e7 sib-2_1.fq.gz.gz 4a84982431b5360126f279ceabf00548 sib-2_2.fq.gz.gz,fastq fastq,6351813000.0,21172710.0,319b2e8b61305a8937eb903a7a20a2e7 sib 2 1.fq.gz.gz,0:150 1:150,A:1674596701;C:1497102731;G:1525030471;T:1654985592;N:97505,150,150,,,1674596701,1497102731,1525030471,1654985592,97505,SRX25626513,SRS22271509,SRA1941919,"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences|Research center of Stem cells and Ageing","Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences",2,0.96469,0.96334,0.04679,0.04633,0.73119,0.73198,0.47359,0.47265,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-07,Larval,Larval,Undetermined,Undetermined
36600,SRR633516,SRX209919,SRS379598,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae maintained at control conditiion  replicate 1,ck1,,,,,,,,,,,dataset of ck1,Seq1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,ck1_run2_R1.fastq.gz ck1_run2_R2.fastq.gz,fastq fastq,1425533040.0,19799070.0,Run 1,0:36 1:36,A:346892627;C:359716472;G:360029628;T:357662709;N:1231604,36,36,,,346892627,359716472,360029628,357662709,1231604,SRX209919,SRS379598,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93467,0.92945,0.06912,0.06892,0.67101,0.67233,0.45594,0.45635,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-16,Larval,Larval,Undetermined,Undetermined
36601,SRR633554,SRX210639,SRS379606,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to hypoxia stress  replicate 3,hypo3,,,,,,,,,,,dataset for sample hypo3,Seq9,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,1048140792.0,14557511.0,hypo3 run1,0:36 1:36,A:259618733;C:259785246;G:262230196;T:266244448;N:262169,36,36,,,259618733,259785246,262230196,266244448,262169,SRX210639,SRS379606,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93986,0.93562,0.06965,0.06854,0.67006,0.67131,0.43686,0.45545,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-18,Larval,Larval,Undetermined,Undetermined
36602,SRR633555,SRX210639,SRS379606,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to hypoxia stress  replicate 3,hypo3,,,,,,,,,,,dataset for sample hypo3,Seq9,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,hypo3_run2_R2.fastq.gz,fastq,1000001376.0,13888908.0,hypo3 run2,0:36 1:36,A:246155193;C:248766521;G:251127505;T:252483880;N:1468277,36,36,,,246155193,248766521,251127505,252483880,1468277,SRX210639,SRS379606,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93954,0.93167,0.06689,0.06675,0.67322,0.6748,0.46287,0.4641,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2013-12-13,Larval,Larval,Undetermined,Undetermined
36603,SRR633552,SRX210638,SRS379605,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to hypoxia stress  replicate 2,hypo2,,,,,,,,,,,dataset for sample hypo2,Seq8,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,944842752.0,13122816.0,hypo2 run1,0:36 1:36,A:230936699;C:236712021;G:238060792;T:238878037;N:255203,36,36,,,230936699,236712021,238060792,238878037,255203,SRX210638,SRS379605,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93909,0.93309,0.07087,0.07105,0.6672,0.66813,0.46107,0.45873,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-18,Larval,Larval,Undetermined,Undetermined
36604,SRR633553,SRX210638,SRS379605,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to hypoxia stress  replicate 2,hypo2,,,,,,,,,,,dataset for sample hypo2,Seq8,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,hypo2_run2_R2.fastq.gz,fastq,988361568.0,13727244.0,hypo2 run2,0:36 1:36,A:240212534;C:248205313;G:250004116;T:248599375;N:1340230,36,36,,,240212534,248205313,250004116,248599375,1340230,SRX210638,SRS379605,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.94029,0.93226,0.07174,0.0704,0.67129,0.67142,0.44913,0.45448,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2013-12-13,Larval,Larval,Undetermined,Undetermined
36605,SRR633550,SRX210637,SRS379604,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to hypoxia stress  replicate 1,hypo1,,,,,,,,,,,dataset for sample hypo1,Seq7,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,1111534488.0,15437979.0,hypo1 run1,0:36 1:36,A:273016370;C:277718934;G:279150260;T:281380668;N:268256,36,36,,,273016370,277718934,279150260,281380668,268256,SRX210637,SRS379604,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93448,0.92737,0.07734,0.077,0.66886,0.67012,0.45226,0.45356,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36606,SRR633551,SRX210637,SRS379604,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to hypoxia stress  replicate 1,hypo1,,,,,,,,,,,dataset for sample hypo1,Seq7,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,hypo1_run2_R2.fastq.gz,fastq,1086628536.0,15092063.0,hypo run2,0:36 1:36,A:265451380;C:271989493;G:274094744;T:273520855;N:1572064,36,36,,,265451380,271989493,274094744,273520855,1572064,SRX210637,SRS379604,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9313,0.92722,0.07613,0.07533,0.67511,0.67468,0.45532,0.4554,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36607,SRR633548,SRX210636,SRS379603,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to cold stress  replicate 3,cold3,,,,,,,,,,,dataset for sample cold3,Seq6,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,cold3_run1_R2.fastq.gz,fastq,856370016.0,11894028.0,cold3 run1,0:36 1:36,A:203894018;C:218965032;G:223278100;T:210022674;N:210192,36,36,,,203894018,218965032,223278100,210022674,210192,SRX210636,SRS379603,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9356,0.93083,0.06354,0.06342,0.67495,0.67659,0.46514,0.46632,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2013-12-13,Larval,Larval,Undetermined,Undetermined
36608,SRR633549,SRX210636,SRS379603,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to cold stress  replicate 3,cold3,,,,,,,,,,,dataset for sample cold3,Seq6,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,912477384.0,12673297.0,cold3 run2,0:36 1:36,A:216126045;C:233918163;G:238615002;T:222532152;N:1286022,36,36,,,216126045,233918163,238615002,222532152,1286022,SRX210636,SRS379603,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93707,0.93034,0.06328,0.06231,0.68199,0.68154,0.45852,0.45712,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36609,SRR633546,SRX210635,SRS379602,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to cold stress  replicate 2,cold2,,,,,,,,,,,dataset for sample cold2,Seq5,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,cold2_run1_R2.fastq.gz,fastq,758704104.0,10537557.0,cold2 run1,0:36 1:36,A:183694352;C:191591559;G:194571241;T:188644215;N:202737,36,36,,,183694352,191591559,194571241,188644215,202737,SRX210635,SRS379602,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9355,0.93037,0.07579,0.07546,0.67758,0.67799,0.46336,0.4537,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36610,SRR633547,SRX210635,SRS379602,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to cold stress  replicate 2,cold2,,,,,,,,,,,dataset for sample cold2,Seq5,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,758269944.0,10531527.0,cold2 run2,0:36 1:36,A:182477606;C:192044319;G:195270817;T:187486180;N:991022,36,36,,,182477606,192044319,195270817,187486180,991022,SRX210635,SRS379602,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93526,0.92936,0.07437,0.07319,0.68252,0.68243,0.45977,0.45219,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36611,SRR633544,SRX210634,SRS379601,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to cold stress  replicate 1,cold1,,,,,,,,,,,dataset for sample cold1,Seq4,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,939174120.0,13044085.0,cold1 run1,0:36 1:36,A:229908173;C:234619234;G:239161528;T:235262399;N:222786,36,36,,,229908173,234619234,239161528,235262399,222786,SRX210634,SRS379601,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92711,0.91958,0.08119,0.08052,0.67032,0.67249,0.4669,0.4661,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36612,SRR633545,SRX210634,SRS379601,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae exposed to cold stress  replicate 1,cold1,,,,,,,,,,,dataset for sample cold1,Seq4,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,cold1_run2_R2.fastq.gz,fastq,969327360.0,13462880.0,cold1 run2,0:36 1:36,A:236017916;C:242777395;G:247690199;T:241486770;N:1355080,36,36,,,236017916,242777395,247690199,241486770,1355080,SRX210634,SRS379601,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92225,0.91649,0.08088,0.07942,0.67811,0.67819,0.47395,0.47096,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2013-12-13,Larval,Larval,Undetermined,Undetermined
36613,SRR633542,SRX210633,SRS379600,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae maintained at control condition  replicate 3,ck3,,,,,,,,,,,dataset for sample ck3,Seq3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,712122912.0,9890596.0,ck3 run1,0:36 1:36,A:173202209;C:178330394;G:181430842;T:178980355;N:179112,36,36,,,173202209,178330394,181430842,178980355,179112,SRX210633,SRS379600,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93432,0.92622,0.07444,0.07347,0.66267,0.66381,0.45819,0.45458,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-17,Larval,Larval,Undetermined,Undetermined
36614,SRR633543,SRX210633,SRS379600,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae maintained at control condition  replicate 3,ck3,,,,,,,,,,,dataset for sample ck3,Seq3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,690216696.0,9586343.0,ck3 run2,0:36 1:36,A:166782468;C:173577192;G:176360566;T:172494787;N:1001683,36,36,,,166782468,173577192,176360566,172494787,1001683,SRX210633,SRS379600,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93384,0.92481,0.07221,0.07087,0.66813,0.6692,0.45481,0.4573,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-16,Larval,Larval,Undetermined,Undetermined
36615,SRR633540,SRX210632,SRS379599,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae maintained at control condition  replicate 2,ck2,,,,,,,,,,,dataset for sample ck2,Seq2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,ck2_run1_R1.fastq.gz ck2_run1_R2.fastq.gz,fastq fastq,893329776.0,12407358.0,run1,0:36 1:36,A:218731725;C:223935822;G:225438843;T:224982678;N:240708,36,36,,,218731725,223935822,225438843,224982678,240708,SRX210632,SRS379599,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92555,0.92021,0.07993,0.08001,0.6631,0.66358,0.46925,0.46964,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2013-12-13,Larval,Larval,Undetermined,Undetermined
36616,SRR633541,SRX210632,SRS379599,SRP017563,PRJNA183864,Zebrafish larvae exposed to cold or hypoxia stress,PRJNA183864,Other,To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses  larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h  and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure  RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.,,,1,zebrafish larvae maintained at control condition  replicate 2,ck2,,,,,,,,,,,dataset for sample ck2,Seq2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP017563,,,,,886248648.0,12309009.0,run2,0:36 1:36,A:215735507;C:222732158;G:224616280;T:221967000;N:1197703,36,36,,,215735507,222732158,224616280,221967000,1197703,SRX210632,SRS379599,SRA062881,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92626,0.91948,0.07987,0.07869,0.66785,0.66778,0.46701,0.4675,36,36,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2012-12-16,Larval,Larval,Undetermined,Undetermined
45033,SRR6466457,SRX3556410,SRS2829758,SRP128941,PRJNA428924,Danio rerio breed:TU Transcriptome or Gene expression,PRJNA428924,Transcriptome Analysis,In order to know about more basic knowledge of none/less gut adhesive strain L. casei BL23 induce on the developmental profile and immunity education in zebrafish,,,pooled of 30 whole body larvae fish at 14 dpf old.,,Control 14,,breed:TU|age:14 dpf|sex:pooled male and female|tissue:whole body|treatment:Control|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish larvae with or without xxx administration,Ctl 14,Ctl 14,Total RNA were isolated from pooled samples of larvae whole body or juvenile s intestines with TRIzol Tian Gen  Beijing  China following the manufacturer s specifications. The RNA was treated with amplification grade DNase I 1 U/ g RNA; Invitrogen  USA. RNA concentration was measured using Qubit  RNA Assay Kit in Qubit  2.0 Flurometer Life Technologies  CA  USA. RNA integrity was assessed using the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system Agilent Technologies  CA  USA. All the RNA RIN values were bigger than 9.5 as analyzed by Bioanalyzer 2100 system. For mRNAseq  equal volume and amount 1 g of total RNA from 4 sample pools of each treatment group were mixed as a sequencing sample.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP128941,,,ZF_CK_1.fq.gz ZF_CK_2.fq.gz,fastq fastq,3194379750.0,12777519.0,ZF CK 1.fq.gz,0:125 1:125,A:843962375;C:752856573;G:753886188;T:843555573;N:119041,125,125,,,843962375,752856573,753886188,843555573,119041,SRX3556410,SRS2829758,SRA646164,Chinese Academy of Agricultural Sciences|Key Laboratory for Feed Biotechnology of the Minis,Chinese Academy of Agricultural Sciences,2,0.94377,0.94754,0.06883,0.06783,0.67442,0.67844,0.46844,0.472,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2018-01-12,Larval,Larval,Trunk,Surface Structure
45034,SRR6466458,SRX3556409,SRS2829757,SRP128941,PRJNA428924,Danio rerio breed:TU Transcriptome or Gene expression,PRJNA428924,Transcriptome Analysis,In order to know about more basic knowledge of none/less gut adhesive strain L. casei BL23 induce on the developmental profile and immunity education in zebrafish,,,pooled of 30 larvae of fish at 14 dpf with L. casei BL23 administration,,BL23 14,,breed:TU|age:14 dpf|sex:pooled male and female|tissue:whole body|treatment:BL23 administration|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish larvae with or without xxx administration,BL23 14,BL23 14,Total RNA were isolated from pooled samples of larvae whole body or juvenile s intestines with TRIzol Tian Gen  Beijing  China following the manufacturer s specifications. The RNA was treated with amplification grade DNase I 1 U/ g RNA; Invitrogen  USA. RNA concentration was measured using Qubit  RNA Assay Kit in Qubit  2.0 Flurometer Life Technologies  CA  USA. RNA integrity was assessed using the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system Agilent Technologies  CA  USA. All the RNA RIN values were bigger than 9.5 as analyzed by Bioanalyzer 2100 system. For mRNAseq  equal volume and amount 1 g of total RNA from 4 sample pools of each treatment group were mixed as a sequencing sample.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP128941,,,ZF_BL23_1.fq.gz ZF_BL23_2.fq.gz,fastq fastq,3720774000.0,14883096.0,ZF BL23 2.fq.gz,0:125 1:125,A:974128380;C:885422072;G:887959104;T:973126100;N:138344,125,125,,,974128380,885422072,887959104,973126100,138344,SRX3556409,SRS2829757,SRA646164,Chinese Academy of Agricultural Sciences|Key Laboratory for Feed Biotechnology of the Minis,Chinese Academy of Agricultural Sciences,2,0.94399,0.94862,0.0635,0.06328,0.66898,0.67243,0.48704,0.48297,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2018-01-12,Larval,Larval,Trunk,Surface Structure
55465,SRR10425371,SRX7121468,SRS5631400,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,DBP 3,,sample title for replicate:2 3|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DBP 3,2 3,2 3,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_DBP_3_S11_L001_R1_001.fastq.gz 160653A_DBP_3_S11_L001_R2_001.fastq.gz 160653A_DBP_3_S11_L002_R1_001.fastq.gz 160653A_DBP_3_S11_L002_R2_001.fastq.gz,fastq fastq fastq fastq,4213944331.0,16837823.0,160653A DBP 3 S11 L001 R1 001.fastq.gz,0:125.11 1:125.16,A:1140267822;C:951856511;G:956555719;T:1143228000;N:22036279,125,125,,,1140267822,951856511,956555719,1143228000,22036279,SRX7121468,SRS5631400,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.92075,0.92322,0.13421,0.13417,0.66884,0.67131,0.46585,0.45982,125,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55466,SRR10425372,SRX7121467,SRS5631399,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,DBP 2,,sample title for replicate:2 2|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DBP 2,2 2,2 2,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_DBP_2_S23_L002_R1_001.fastq.gz 160653A_DBP_2_S23_L002_R2_001.fastq.gz,fastq fastq,983641304.0,3925939.0,160653A DBP 2 S23 L002 R1 001.fastq.gz,0:125.26 1:125.29,A:263874385;C:226824475;G:226589811;T:265169405;N:1183228,125,125,,,263874385,226824475,226589811,265169405,1183228,SRX7121467,SRS5631399,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.93403,0.93521,0.12516,0.12672,0.66596,0.66815,0.46015,0.46602,126,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55467,SRR10425373,SRX7121466,SRS5631398,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,DBP 1,,sample title for replicate:2 1|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DBP 1,2 1,2 1,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_DBP_1_S10_L001_R1_001.fastq.gz 160653A_DBP_1_S10_L001_R2_001.fastq.gz 160653A_DBP_1_S10_L002_R1_001.fastq.gz 160653A_DBP_1_S10_L002_R2_001.fastq.gz,fastq fastq fastq fastq,3902022384.0,15589553.0,160653A DBP 1 S10 L001 R1 001.fastq.gz,0:125.13 1:125.17,A:1041532695;C:895336677;G:897445748;T:1047319053;N:20388211,125,125,,,1041532695,895336677,897445748,1047319053,20388211,SRX7121466,SRS5631398,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.92278,0.92593,0.12212,0.12242,0.66381,0.66653,0.46732,0.46157,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55468,SRR10425374,SRX7121465,SRS5631397,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,DEHP 3,,sample title for replicate:1 3|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DEHP 3,1 3,1 3,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_DEHP_3_S9_L001_R1_001.fastq.gz 160653A_DEHP_3_S9_L001_R2_001.fastq.gz 160653A_DEHP_3_S9_L002_R1_001.fastq.gz 160653A_DEHP_3_S9_L002_R2_001.fastq.gz,fastq fastq fastq fastq,3978190342.0,15890841.0,160653A DEHP 3 S9 L001 R1 001.fastq.gz,0:125.15 1:125.19,A:1057764550;C:917477196;G:923586377;T:1058742562;N:20619657,125,125,,,1057764550,917477196,923586377,1058742562,20619657,SRX7121465,SRS5631397,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.92571,0.92902,0.11691,0.11736,0.67192,0.67383,0.46273,0.46475,125,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55469,SRR10425375,SRX7121464,SRS5631396,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,DEHP 2,,sample title for replicate:1 2|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DEHP 2,1 2,1 2,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_DEHP_2_S22_L002_R1_001.fastq.gz 160653A_DEHP_2_S22_L002_R2_001.fastq.gz,fastq fastq,925063432.0,3692039.0,160653A DEHP 2 S22 L002 R1 001.fastq.gz,0:125.26 1:125.30,A:247171641;C:214421668;G:215124515;T:247261313;N:1084295,125,125,,,247171641,214421668,215124515,247261313,1084295,SRX7121464,SRS5631396,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.93712,0.93841,0.12004,0.12183,0.67231,0.6747,0.47057,0.46379,124,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55470,SRR10425376,SRX7121463,SRS5631395,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,DEHP 1,,sample title for replicate:1 1|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,DEHP 1,1 1,1 1,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_DEHP_1_S8_L001_R1_001.fastq.gz 160653A_DEHP_1_S8_L001_R2_001.fastq.gz 160653A_DEHP_1_S8_L002_R1_001.fastq.gz 160653A_DEHP_1_S8_L002_R2_001.fastq.gz,fastq fastq fastq fastq,4181311851.0,16698140.0,160653A DEHP 1 S8 L001 R1 001.fastq.gz,0:125.19 1:125.22,A:1132179802;C:946301758;G:946478272;T:1135074674;N:21277345,125,125,,,1132179802,946301758,946478272,1135074674,21277345,SRX7121463,SRS5631395,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.92101,0.92416,0.13798,0.13866,0.6678,0.66963,0.46137,0.46314,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55471,SRR10425377,SRX7121462,SRS5631394,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,con 3,,sample title for replicate:0 3|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,con 3,0 3,0 3,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_con_3_S7_L002_R2_001.fastq.gz 160653A_con_3_S7_L002_R1_001.fastq.gz 160653A_con_3_S7_L001_R2_001.fastq.gz 160653A_con_3_S7_L001_R1_001.fastq.gz,fastq fastq fastq fastq,4645800774.0,18572727.0,160653A con 3 S7 L001 R1 001.fastq.gz,0:125.05 1:125.09,A:1251751873;C:1054269377;G:1062381476;T:1252233640;N:25164408,125,125,,,1251751873,1054269377,1062381476,1252233640,25164408,SRX7121462,SRS5631394,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.9211,0.92397,0.13775,0.13782,0.6703,0.6728,0.46466,0.46374,125,125,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55472,SRR10425378,SRX7121461,SRS5631393,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,con 2,,sample title for replicate:0 2|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,con 2,0 2,0 2,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_con_2_S108_L008_R1_001.fastq.gz 160653A_con_2_S108_L008_R2_001.fastq.gz,fastq fastq,752863995.0,3006358.0,160653A con 2 S108 L008 R1 001.fastq.gz,0:125.20 1:125.23,A:203171883;C:172318434;G:172771199;T:203551286;N:1051193,125,125,,,203171883,172318434,172771199,203551286,1051193,SRX7121461,SRS5631393,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.93253,0.93349,0.13528,0.13652,0.66186,0.66665,0.46382,0.47405,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
55473,SRR10425379,SRX7121460,SRS5631392,SRP229414,PRJNA588649,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,PRJNA588649,Other,,,,,,con 1,,sample title for replicate:0 1|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal,,,,,,,,,con 1,0 1,0 1,RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP229414,,,160653A_con_1_S6_L001_R1_001.fastq.gz 160653A_con_1_S6_L001_R2_001.fastq.gz 160653A_con_1_S6_L002_R1_001.fastq.gz 160653A_con_1_S6_L002_R2_001.fastq.gz,fastq fastq fastq fastq,4387536203.0,17538394.0,160653A con 1 S6 L001 R1 001.fastq.gz,0:125.06 1:125.11,A:1178097571;C:999772360;G:1005888816;T:1180262110;N:23515346,125,125,,,1178097571,999772360,1005888816,1180262110,23515346,SRX7121460,SRS5631392,SRA993820,Chinese academy of fishery sciences|fishery Resource and Environmental Research Center,Chinese academy of fishery sciences,2,0.92006,0.92409,0.13074,0.13101,0.66263,0.66505,0.4728,0.47345,126,126,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-11-11,Larval,Larval,Embryo Imprecise,All anatomical structures
58872,SRR11510448,SRX8082500,SRS6450585,SRP255712,PRJNA623798,Single cell lineage tracing on endogenous scarring sites scLOESS,PRJNA623798,Other,Lineage recording of zebrafish embryogenesis reveals early cell fate commitment,,,The developmental history of a whole zebrafish organism were recording by LOESS Lineage tracing Of Endogenous Scarring Sites technique.  And both cell lineage histories and cell molecular profile were reconstructed by single cell RNA Seq profiling  with the help of single cell sequencing methods and self developed analysis strategies.,Single Cell RNA Seq of a whole organism of zebrafish larva,SC,,strain:AB line|age:7dpf|dev stage:larvae|sex:not applicable|tissue:Whole organism|collection date:2018 07 26|BioSampleModel:Model organism or animal,,,,,,,,,Single Cell RNA Seq of a whole organism of zebrafish larva,SC L3,SC L3,Zebrafish embryo at one cell stage were micro injected with gRNA pool and Cas9 mRNA mixture  and growth at standard condiction ttwo xxxdpf. Then a single larva were lysis into single cell suspension and the RNA profile were obtained by 10x Genomics Chromium Single Cell three prime Reagent Kits v2 Chemistry.,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,RT-PCR,PAIRED,ILLUMINA,HiSeq X Ten,,SRP255712,,,SC-I1_S1_L001_R1_001.fastq.gz SC-I1_S1_L001_R2_001.fastq.gz SC-I1_S1_L002_R1_001.fastq.gz SC-I1_S1_L002_R2_001.fastq.gz SC-I1_S1_L003_R1_001.fastq.gz SC-I1_S1_L003_R2_001.fastq.gz SC-I2_S1_L001_R1_001.fastq.gz SC-I2_S1_L001_R2_001.fastq.gz SC-I2_S1_L002_R1_001.fastq.gz SC-I2_S1_L002_R2_001.fastq.gz SC-I2_S1_L003_R1_001.fastq.gz SC-I2_S1_L003_R2_001.fastq.gz SC-I3_S1_L001_R1_001.fastq.gz SC-I3_S1_L001_R2_001.fastq.gz SC-I3_S1_L002_R1_001.fastq.gz SC-I3_S1_L002_R2_001.fastq.gz SC-I3_S1_L003_R1_001.fastq.gz SC-I3_S1_L003_R2_001.fastq.gz SC-I4_S1_L001_R1_001.fastq.gz SC-I4_S1_L001_R2_001.fastq.gz SC-I4_S1_L002_R1_001.fastq.gz SC-I4_S1_L002_R2_001.fastq.gz SC-I4_S1_L003_R1_001.fastq.gz SC-I4_S1_L003_R2_001.fastq.gz,fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq,86925323584.0,493893884.0,SC I1 S1 L001 R1 001.fastq.gz,0:26 1:150,A:24075189135;C:19816237204;G:21200277502;T:21828035227;N:5584516,26,150,,,24075189135,19816237204,21200277502,21828035227,5584516,SRX8082500,SRS6450585,SRA1063827,Sun Yat- sen University|Life Sicence School,Sun Yat- sen University,2,0.00528,0.77254,0.00115,0.06529,0.98729,0.8158,0.41854,0.50141,26,150,T,B,sc-like readlen,illumina,hiseq_era,unknown,other,unknown,sc,single_cell_droplet,10x,,China,2020-04-11,Larval,Larval,Whole Organism,All anatomical structures
58991,SRR11577236,SRX8145127,SRS6507863,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 iso 5,20170222A 5dpf iso,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 22|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A016,A016,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170222A_5dpf_iso_S10_R1_001.fastq.gz,fastq,1145417285.0,8785034.0,20170222A 5dpf iso S10 R1 001.fastq.gz,0:130.38 1:0,A:322759854;C:242145737;G:242143184;T:336959770;N:1408740,130,0,,,322759854,242145737,242143184,336959770,1408740,SRX8145127,SRS6507863,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93521,,0.17614,,0.66411,,0.49656,,109,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
58992,SRR11577237,SRX8145126,SRS6507862,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 social 5,20170222A 5dpf soc,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 22|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A015,A015,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170222A_5dpf_soc_S9_R1_001.fastq.gz,fastq,1951935848.0,15606984.0,20170222A 5dpf soc S9 R1 001.fastq.gz,0:125.07 1:0,A:546425279;C:412941736;G:422316572;T:568807662;N:1444599,125,0,,,546425279,412941736,422316572,568807662,1444599,SRX8145126,SRS6507862,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93665,,0.17342,,0.65971,,0.50276,,135,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
58993,SRR11577238,SRX8145125,SRS6507861,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 iso 4,20170210B 5dpf iso,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 10|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A014,A014,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170210B_5dpf_iso_S8_R1_001.fastq.gz,fastq,1438281543.0,10175957.0,20170210B 5dpf iso S8 R1 001.fastq.gz,0:141.34 1:0,A:405893769;C:302927323;G:299208098;T:428334452;N:1917901,141,0,,,405893769,302927323,299208098,428334452,1917901,SRX8145125,SRS6507861,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.9398,,0.14632,,0.66225,,0.50935,,150,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
58994,SRR11577239,SRX8145124,SRS6507860,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 social 4,20170210B 5dpf soc,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 10|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A013,A013,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170210B_5dpf_soc_S7_R1_001.fastq.gz,fastq,2086284546.0,17392851.0,20170210B 5dpf soc S7 R1 001.fastq.gz,0:119.95 1:0,A:564323359;C:455998854;G:458642653;T:599704356;N:7615324,119,0,,,564323359,455998854,458642653,599704356,7615324,SRX8145124,SRS6507860,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94679,,0.14294,,0.66724,,0.49719,,151,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
58995,SRR11577240,SRX8145123,SRS6507859,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 iso 3,20170210A 5dpf iso,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 10|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A012,A012,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170210A_5dpf_iso_S6_R1_001.fastq.gz,fastq,1518854121.0,12280862.0,20170210A 5dpf iso S6 R1 001.fastq.gz,0:123.68 1:0,A:416560027;C:326775060;G:324773078;T:444339405;N:6406551,123,0,,,416560027,326775060,324773078,444339405,6406551,SRX8145123,SRS6507859,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94696,,0.13785,,0.65969,,0.50295,,93,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59001,SRR11577246,SRX8145117,SRS6507853,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 social 3,20170210A 5dpf soc,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 10|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A007,A007,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170210A_5dpf_soc_S5_R1_001.fastq.gz,fastq,1726237934.0,14278894.0,20170210A 5dpf soc S5 R1 001.fastq.gz,0:120.89 1:0,A:463605810;C:370696125;G:372572642;T:495475185;N:23888172,120,0,,,463605810,370696125,372572642,495475185,23888172,SRX8145117,SRS6507853,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94821,,0.14237,,0.66689,,0.48963,,136,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59008,SRR11577253,SRX8145110,SRS6507846,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 iso 6,20171109 8dpf iso B,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 09|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:6|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D508,D710 D508,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171109_8dpf_iso_B_S22_R1_001.fastq.gz,fastq,1700207946.0,12434052.0,20171109 8dpf iso B S22 R1 001.fastq.gz,0:136.74 1:0,A:521541858;C:336119080;G:332771490;T:509018316;N:757202,136,0,,,521541858,336119080,332771490,509018316,757202,SRX8145110,SRS6507846,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93058,,0.19578,,0.68868,,0.50184,,139,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59009,SRR11577254,SRX8145109,SRS6507845,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 social 6,20171109 8dpf soc B,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 09|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:6|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D507,D710 D507,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171109_8dpf_soc_B_S21_R1_001.fastq.gz,fastq,2564439613.0,18763192.0,20171109 8dpf soc B S21 R1 001.fastq.gz,0:136.67 1:0,A:790757790;C:503826332;G:501530520;T:767769522;N:555449,136,0,,,790757790,503826332,501530520,767769522,555449,SRX8145109,SRS6507845,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.92839,,0.1986,,0.68885,,0.50483,,131,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59010,SRR11577255,SRX8145108,SRS6507844,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 iso 5,20171026 8dpf iso,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 10 26|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D506,D710 D506,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171026_8dpf_iso_S20_R1_001.fastq.gz,fastq,2826413292.0,20452973.0,20171026 8dpf iso S20 R1 001.fastq.gz,0:138.19 1:0,A:865014614;C:559489084;G:552925517;T:847716596;N:1267481,138,0,,,865014614,559489084,552925517,847716596,1267481,SRX8145108,SRS6507844,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.92608,,0.2105,,0.67903,,0.49051,,151,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59011,SRR11577256,SRX8145107,SRS6507843,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 social 5,20171026 8dpf soc,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 10 26|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D505,D710 D505,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171026_8dpf_soc_S19_R1_001.fastq.gz,fastq,2392544953.0,17491839.0,20171026 8dpf soc S19 R1 001.fastq.gz,0:136.78 1:0,A:742679673;C:465343974;G:462989237;T:721074201;N:457868,136,0,,,742679673,465343974,462989237,721074201,457868,SRX8145107,SRS6507843,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.92316,,0.21835,,0.68655,,0.48878,,98,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59012,SRR11577257,SRX8145106,SRS6507842,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 iso 2,20170209 5dpf iso,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 09|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A006,A006,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170209_5dpf_iso_S4_R1_001.fastq.gz,fastq,1425974682.0,10933160.0,20170209 5dpf iso S4 R1 001.fastq.gz,0:130.43 1:0,A:384119497;C:314204651;G:311289822;T:412270680;N:4090032,130,0,,,384119497,314204651,311289822,412270680,4090032,SRX8145106,SRS6507842,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94694,,0.14009,,0.66271,,0.50186,,35,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59013,SRR11577258,SRX8145105,SRS6507841,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 iso 4,20171019 8dpf iso,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 10 19|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D504,D710 D504,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171019_8dpf_iso_S18_R1_001.fastq.gz,fastq,1983037322.0,14462095.0,20171019 8dpf iso S18 R1 001.fastq.gz,0:137.12 1:0,A:615819850;C:385988693;G:385056417;T:595787232;N:385130,137,0,,,615819850,385988693,385056417,595787232,385130,SRX8145105,SRS6507841,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.92714,,0.20602,,0.68387,,0.49262,,150,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59014,SRR11577259,SRX8145104,SRS6507840,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 social 4,20171019 8dpf soc,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 10 19|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D503,D710 D503,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171019_8dpf_soc_S17_R1_001.fastq.gz,fastq,2128354590.0,15330724.0,20171019 8dpf soc S17 R1 001.fastq.gz,0:138.83 1:0,A:664838663;C:412783437;G:406007808;T:644520130;N:204552,138,0,,,664838663,412783437,406007808,644520130,204552,SRX8145104,SRS6507840,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.92294,,0.21336,,0.68907,,0.48677,,112,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59015,SRR11577260,SRX8145103,SRS6507839,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 iso 3,20170921 8dpf iso,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 09 21|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D502,D710 D502,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170921_8dpf_iso_S16_R1_001.fastq.gz,fastq,1715158999.0,12523396.0,20170921 8dpf iso S16 R1 001.fastq.gz,0:136.96 1:0,A:517292645;C:345214588;G:340081628;T:512406926;N:163212,136,0,,,517292645,345214588,340081628,512406926,163212,SRX8145103,SRS6507839,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93065,,0.1956,,0.67543,,0.48715,,112,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59016,SRR11577261,SRX8145102,SRS6507838,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 social 3,20170921 8dpf soc,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 09 21|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D710 D501,D710 D501,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170921_8dpf_soc_S15_R1_001.fastq.gz,fastq,1903374830.0,13985406.0,20170921 8dpf soc S15 R1 001.fastq.gz,0:136.10 1:0,A:576312482;C:382917713;G:376058448;T:567672351;N:413836,136,0,,,576312482,382917713,376058448,567672351,413836,SRX8145102,SRS6507838,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.928,,0.20225,,0.68079,,0.47235,,139,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59023,SRR11577268,SRX8145095,SRS6507831,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 social 2,20170209 5dpf soc,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 09|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A005,A005,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170209_5dpf_soc_S3_R1_001.fastq.gz,fastq,932021340.0,8105951.0,20170209 5dpf soc S3 R1 001.fastq.gz,0:114.98 1:0,A:242483339;C:210201362;G:210814912;T:264386634;N:4135093,114,0,,,242483339,210201362,210814912,264386634,4135093,SRX8145095,SRS6507831,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.95059,,0.13154,,0.66099,,0.48071,,86,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59028,SRR11577273,SRX8145090,SRS6507826,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 social 2,20171109  8dpf soc,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 09|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D708 D504,D708 D504,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171109__8dpf_soc_S4_R1_001.fastq.gz,fastq,3315005132.0,25084324.0,20171109  8dpf soc S4 R1 001.fastq.gz,0:132.15 1:0,A:943965767;C:716020466;G:709793117;T:943523271;N:1702511,132,0,,,943965767,716020466,709793117,943523271,1702511,SRX8145090,SRS6507826,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94089,,0.15844,,0.68314,,0.48662,,150,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59029,SRR11577274,SRX8145089,SRS6507825,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 iso 2,20171109  8dpf iso,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 09|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D708 D503,D708 D503,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171109__8dpf_iso_S3_R1_001.fastq.gz,fastq,2050353509.0,15447845.0,20171109  8dpf iso S3 R1 001.fastq.gz,0:132.73 1:0,A:587865535;C:439314529;G:435742480;T:586757262;N:673703,132,0,,,587865535,439314529,435742480,586757262,673703,SRX8145089,SRS6507825,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93978,,0.1602,,0.67381,,0.48469,,151,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59030,SRR11577275,SRX8145088,SRS6507824,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 social 1,20171102  8dpf soc,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 02|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D708 D502,D708 D502,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171102__8dpf_soc_S2_R1_001.fastq.gz,fastq,1343770858.0,9948770.0,20171102  8dpf soc S2 R1 001.fastq.gz,0:135.07 1:0,A:393209270;C:281371562;G:280065221;T:388373414;N:751391,135,0,,,393209270,281371562,280065221,388373414,751391,SRX8145088,SRS6507824,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93753,,0.16528,,0.67478,,0.48859,,151,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59031,SRR11577276,SRX8145087,SRS6507823,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,8 iso 1,20171102  8dpf iso,,breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 02|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,D708 D501,D708 D501,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20171102__8dpf_iso_S1_R1_001.fastq.gz,fastq,2222891523.0,16512518.0,20171102  8dpf iso S1 R1 001.fastq.gz,0:134.62 1:0,A:612900253;C:492583648;G:489352034;T:626301202;N:1754386,134,0,,,612900253,492583648,489352034,626301202,1754386,SRX8145087,SRS6507823,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94375,,0.14492,,0.67117,,0.4862,,150,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59032,SRR11577277,SRX8145086,SRS6507822,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 iso 6,20170222B 5dpf iso,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 22|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:6|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A019,A019,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170222B_5dpf_iso_S12_R1_001.fastq.gz,fastq,1384115190.0,10880190.0,20170222B 5dpf iso S12 R1 001.fastq.gz,0:127.21 1:0,A:374024483;C:300637678;G:306091186;T:396608297;N:6753546,127,0,,,374024483,300637678,306091186,396608297,6753546,SRX8145086,SRS6507822,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.93966,,0.14845,,0.66145,,0.49277,,135,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59033,SRR11577278,SRX8145085,SRS6507821,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 social 6,20170222B 5dpf soc,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 22|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:6|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A018,A018,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170222B_5dpf_soc_S11_R1_001.fastq.gz,fastq,1509062868.0,11709685.0,20170222B 5dpf soc S11 R1 001.fastq.gz,0:128.87 1:0,A:424881841;C:317025415;G:321339469;T:440828991;N:4987152,128,0,,,424881841,317025415,321339469,440828991,4987152,SRX8145085,SRS6507821,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.92918,,0.18084,,0.67067,,0.48693,,113,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59034,SRR11577279,SRX8145084,SRS6507820,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 iso 1,20170201 5pdf iso,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 01|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:isolated|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A004,A004,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170201_5pdf_iso_S2_R1_001.fastq.gz,fastq,2182551927.0,16660472.0,20170201 5pdf iso S2 R1 001.fastq.gz,0:131.00 1:0,A:585229301;C:487317339;G:480857079;T:626932180;N:2216028,131,0,,,585229301,487317339,480857079,626932180,2216028,SRX8145084,SRS6507820,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94677,,0.13688,,0.6633,,0.47121,,145,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
59035,SRR11577280,SRX8145083,SRS6507819,SRP257630,PRJNA627056,Impact of social isolation on brain transcriptome in zebrafish,PRJNA627056,Other,The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.,,,,5 social 1,20170201 5dpf soc,,breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 01|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:social|replicate:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of danio rerio: larval and juvenile brain,A002,A002,RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP257630,,,20170201_5dpf_soc_S1_R1_001.fastq.gz,fastq,1713105557.0,13585484.0,20170201 5dpf soc S1 R1 001.fastq.gz,0:126.10 1:0,A:446628660;C:370803315;G:376374066;T:481602204;N:37697312,126,0,,,446628660,370803315,376374066,481602204,37697312,SRX8145083,SRS6507819,SRA1067479,Max Planck Institute for Brain Research|Synaptic Plasticity,Max Planck Institute for Brain Research,1,0.94527,,0.13591,,0.66302,,0.48385,,151,,B,,usable mapping rate,illumina,nextseq,unknown,poly_a,unknown,bulk,unknown,unknown,,Germany,2020-04-21,Larval,Larval,Brain,Nervous System
66745,SRR16530663,SRX12733276,SRS10681588,SRP342649,PRJNA773625,loft ventricle RNAseq,PRJNA773625,Other,Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here  we report the isolation  cloning  and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish  and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants  it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation  and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.,,,,RNAseq of zebrafish heart,loft mutant RNAseq rep2,,strain:Tu|dev stage:3 dpf determined|tissue:ventricle|genotype:loft mutant|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of zebrafish heart,loft mutant RNAseq rep2,loft mutant RNAseq rep2,The cDNA libraries were constructed by MALBAC method KT110700424  Yikon Genomics,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP342649,,assembly:danRer7,loft_mutant_RNAseq_rep2.1.bam loft_mutant_RNAseq_rep2.2.bam,bam bam,4184284762.0,20714281.0,loft mutant RNAseq rep2.1.bam,0:101 1:101,A:1235933017;C:598023900;G:852833672;T:1497442499;N:51674,101,101,,,1235933017,598023900,852833672,1497442499,51674,SRX12733276,SRS10681588,SRA1315131,Peking University|Institute of Molecular Medicine,Peking University,2,0.4825,0.50527,0.2448,0.25451,0.87288,0.87888,0.46562,0.45703,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-10-22,Larval,Larval,Heart,Cardiovascular System
66746,SRR16530664,SRX12733275,SRS10681587,SRP342649,PRJNA773625,loft ventricle RNAseq,PRJNA773625,Other,Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here  we report the isolation  cloning  and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish  and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants  it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation  and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.,,,,RNAseq of zebrafish heart,loft mutant RNAseq rep1,,strain:Tu|dev stage:3 dpf determined|tissue:ventricle|genotype:loft mutant|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of zebrafish heart,loft mutant RNAseq rep1,loft mutant RNAseq rep1,The cDNA libraries were constructed by MALBAC method KT110700424  Yikon Genomics,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP342649,,assembly:danRer7,loft_mutant_RNAseq_rep1.1.bam loft_mutant_RNAseq_rep1.2.bam,bam bam,4349194532.0,21530666.0,loft mutant RNAseq rep1.1.bam,0:101 1:101,A:1285307324;C:607005074;G:876055199;T:1580773245;N:53690,101,101,,,1285307324,607005074,876055199,1580773245,53690,SRX12733275,SRS10681587,SRA1315131,Peking University|Institute of Molecular Medicine,Peking University,2,0.50395,0.50527,0.2163,0.21684,0.87444,0.88371,0.47374,0.46918,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-10-22,Larval,Larval,Heart,Cardiovascular System
66747,SRR16530665,SRX12733274,SRS10681586,SRP342649,PRJNA773625,loft ventricle RNAseq,PRJNA773625,Other,Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here  we report the isolation  cloning  and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish  and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants  it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation  and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.,,,,RNAseq of zebrafish heart,loft sibling RNAseq rep2,,strain:Tu|dev stage:3 dpf determined|tissue:ventricle|genotype:loft sibling|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of zebrafish heart,loft sibling RNAseq rep2,loft sibling RNAseq rep2,The cDNA libraries were constructed by MALBAC method KT110700424  Yikon Genomics,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP342649,,assembly:danRer7,loft_sibling_RNAseq_rep2.1.bam loft_sibling_RNAseq_rep2.2.bam,bam bam,3901869168.0,19316184.0,loft sibling RNAseq rep2.1.bam,0:101 1:101,A:1145110581;C:555289006;G:798238595;T:1403183360;N:47626,101,101,,,1145110581,555289006,798238595,1403183360,47626,SRX12733274,SRS10681586,SRA1315131,Peking University|Institute of Molecular Medicine,Peking University,2,0.47753,0.48927,0.20347,0.20928,0.86994,0.87726,0.46911,0.43318,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-10-22,Larval,Larval,Heart,Cardiovascular System
66748,SRR16530666,SRX12733273,SRS10681585,SRP342649,PRJNA773625,loft ventricle RNAseq,PRJNA773625,Other,Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here  we report the isolation  cloning  and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish  and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants  it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation  and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.,,,,RNAseq of zebrafish heart,loft sibling RNAseq rep1,,strain:Tu|dev stage:3 dpf determined|tissue:ventricle|genotype:loft sibling|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNAseq of zebrafish heart,loft sibling RNAseq rep1,loft sibling RNAseq rep1,The cDNA libraries were constructed by MALBAC method KT110700424  Yikon Genomics,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP342649,,assembly:danRer7,loft_sibling_RNAseq_rep1.1.bam loft_sibling_RNAseq_rep1.2.bam,bam bam,3973568260.0,19671130.0,loft sibling RNAseq rep1.1.bam,0:101 1:101,A:1171529555;C:572236920;G:816914171;T:1412839393;N:48221,101,101,,,1171529555,572236920,816914171,1412839393,48221,SRX12733273,SRS10681585,SRA1315131,Peking University|Institute of Molecular Medicine,Peking University,2,0.47895,0.47714,0.25104,0.24998,0.86841,0.87568,0.46945,0.47273,101,101,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2021-10-22,Larval,Larval,Heart,Cardiovascular System
69631,SRR19025949,SRX15097731,SRS12843022,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,trmt5 knock out zebrafish,trmt5 /  1,,isolate:total RNAs isolated from trmt5 knock out zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,66ff83cdf42005466331679c80f92d12,66ff83cdf42005466331679c80f92d12,trmt5 knock out zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,hom_1_Clean_Data2.fq.gz hom_1_Clean_Data1.fq.gz,fastq fastq,6169235123.0,21958377.0,hom 1 Clean Data1.fq.gz,0:140.50 1:140.46,A:1560853223;C:1511690807;G:1520013294;T:1576470786;N:207013,140,140,,,1560853223,1511690807,1520013294,1576470786,207013,SRX15097731,SRS12843022,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96859,0.96977,0.0392,0.03772,0.70658,0.70751,0.49243,0.49647,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69632,SRR19025950,SRX15097730,SRS12843021,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,wild type zebrafish,trmt5+/+ 4,,isolate:total RNAs isolated from WT zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,d919fe9c401838b06040e4ee1638981e,d919fe9c401838b06040e4ee1638981e,wild type zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,wt_4_Clean_Data1.fq.gz wt_4_Clean_Data2.fq.gz,fastq fastq,6033250663.0,21483270.0,wt 4 Clean Data1.fq.gz,0:140.44 1:140.40,A:1538261833;C:1466011430;G:1475787704;T:1552985419;N:204277,140,140,,,1538261833,1466011430,1475787704,1552985419,204277,SRX15097730,SRS12843021,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96586,0.96804,0.04584,0.04451,0.68698,0.68688,0.46575,0.44961,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69633,SRR19025951,SRX15097729,SRS12843020,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,wild type zebrafish,trmt5+/+ 3,,isolate:total RNAs isolated from WT zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,d0459b1dac26131278f334c9290f1d2b,d0459b1dac26131278f334c9290f1d2b,wild type zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,wt_3_Clean_Data2.fq.gz wt_3_Clean_Data1.fq.gz,fastq fastq,5891772865.0,20970124.0,wt 3 Clean Data1.fq.gz,0:140.50 1:140.46,A:1502638659;C:1431652346;G:1439973482;T:1517318614;N:189764,140,140,,,1502638659,1431652346,1439973482,1517318614,189764,SRX15097729,SRS12843020,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96668,0.96871,0.04432,0.04253,0.6887,0.68842,0.46997,0.45735,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69634,SRR19025952,SRX15097728,SRS12843019,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,wild type zebrafish,trmt5+/+ 2,,isolate:total RNAs isolated from WT zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,9dbee5750238db2822304d9f2e0edea9,9dbee5750238db2822304d9f2e0edea9,wild type zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,wt_2_Clean_Data1.fq.gz wt_2_Clean_Data2.fq.gz,fastq fastq,5766006501.0,20521262.0,wt 2 Clean Data1.fq.gz,0:140.51 1:140.47,A:1470465676;C:1400491025;G:1410148993;T:1484706149;N:194658,140,140,,,1470465676,1400491025,1410148993,1484706149,194658,SRX15097728,SRS12843019,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96644,0.9675,0.04557,0.04323,0.68832,0.68842,0.4676,0.4602,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69635,SRR19025953,SRX15097727,SRS12843018,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,trmt5 knock out zebrafish,trmt5 /  4,,isolate:total RNAs isolated from trmt5 knock out zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate4|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,7a076bcf71269def10954f4107bf1124,7a076bcf71269def10954f4107bf1124,trmt5 knock out zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,hom_4_Clean_Data1.fq.gz hom_4_Clean_Data2.fq.gz,fastq fastq,6241361550.0,22218760.0,hom 4 Clean Data1.fq.gz,0:140.47 1:140.43,A:1577557316;C:1530905024;G:1539141855;T:1593551612;N:205743,140,140,,,1577557316,1530905024,1539141855,1593551612,205743,SRX15097727,SRS12843018,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.97042,0.97147,0.03889,0.03706,0.71035,0.71062,0.48557,0.50047,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69636,SRR19025954,SRX15097726,SRS12843017,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,trmt5 knock out zebrafish,trmt5 /  3,,isolate:total RNAs isolated from trmt5 knock out zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,5689e7391d2921855b4759bcdc123378,5689e7391d2921855b4759bcdc123378,trmt5 knock out zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,hom_3_Clean_Data1.fq.gz hom_3_Clean_Data2.fq.gz,fastq fastq,6051656240.0,21549593.0,hom 3 Clean Data1.fq.gz,0:140.43 1:140.39,A:1531682742;C:1482500631;G:1490088770;T:1547184370;N:199727,140,140,,,1531682742,1482500631,1490088770,1547184370,199727,SRX15097726,SRS12843017,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96902,0.97138,0.03966,0.03849,0.71208,0.71244,0.49461,0.4851,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69637,SRR19025955,SRX15097725,SRS12843016,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,trmt5 knock out zebrafish,trmt5 /  2,,isolate:total RNAs isolated from trmt5 knock out zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,8b1e5ab49c8be853af71803609cb227c,8b1e5ab49c8be853af71803609cb227c,trmt5 knock out zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,hom_2_Clean_Data1.fq.gz hom_2_Clean_Data2.fq.gz,fastq fastq,6212537192.0,22136506.0,hom 2 Clean Data1.fq.gz,0:140.34 1:140.31,A:1573896925;C:1526845773;G:1529170873;T:1582416723;N:206898,140,140,,,1573896925,1526845773,1529170873,1582416723,206898,SRX15097725,SRS12843016,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96821,0.96875,0.03881,0.03757,0.71259,0.71285,0.48811,0.48638,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
69638,SRR19025956,SRX15097724,SRS12843015,SRP373069,PRJNA833575,RNA sequencing analysis of  wildtype and trmt5 knock out zebrafish,PRJNA833575,Other,Having clarified the alternated histological properties in trmt5 null zebrafish  we were curious about the differences at the molecular level induced by trmt5 depletion. Whole body total RNAs samples were prepared from trmt5 /  mutants and wide type siblings larvae at 16 dpf  and RNA sequencing analysis was performed.,,,,wild type zebrafish,trmt5+/+ 1,,isolate:total RNAs isolated from WT zebrafish|age:16 dpf|dev stage:larval stage|sex:N1|tissue:whole body|replicate:replicate1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish,acd6771912bd9a4423df64fa4898e484,acd6771912bd9a4423df64fa4898e484,wild type zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP373069,,,wt_1_Clean_Data1.fq.gz wt_1_Clean_Data2.fq.gz,fastq fastq,6143077598.0,21878233.0,wt 1 Clean Data1.fq.gz,0:140.41 1:140.38,A:1578226894;C:1486538531;G:1490138396;T:1587966031;N:207746,140,140,,,1578226894,1486538531,1490138396,1587966031,207746,SRX15097724,SRS12843015,SRA1412777,Zhejiang University|Division of Medical Genetics and Genomics,Zhejiang University,2,0.96278,0.96429,0.05204,0.05046,0.67817,0.67978,0.45055,0.43833,141,141,B,B,biological fallback assumption,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-05-02,Larval,Larval,Trunk,Surface Structure
71545,SRR21784852,SRX17779292,SRS15305447,SRP400746,PRJNA883515,Danio rerio Transcriptome or Gene expression,PRJNA883515,Other,Carassius auratus complex formula CACF is a combination prescription of traditional Chinese medicine composed of extracts from C. auratus  Rhizoma dioscoreae  Lycium chinense  and Rehmannia glutinosa Libosch. Previously  CACF has been proven the anti diabetes effect on HFD treatment mice model. In this study  we used zebrafish model to observe whether CACF have anti cancer effect or not.,,,,Model organism or animal sample from Danio rerio Normal diet 1 1,CD36 normal diet 1 1,,ecotype:Taiwan  ROC|age:15 dpf|dev stage:larvae|sex:not determined|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of CD36 normal diet fish 1 1,C15D 12 1 1,C15D 12 1 1,the zebrafish larvae fed with normal diet from 5dpf to 15 dpf and fast for two days  then sacrificed to extract the total RNA,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiScanSQ,,SRP400746,,,C15D_12_1_1_paired C15D_12_1_2_paired,fastq fastq,5223003761.0,17590299.0,C15D 12 1 1 paired,0:148.55 1:148.38,A:1369931254;C:1227975299;G:1223263204;T:1401778621;N:55383,148,148,,,1369931254,1227975299,1223263204,1401778621,55383,SRX17779292,SRS15305447,SRA1511182,National Health Research Institutes|Institute of Molecular and Genomic Medicine,National Health Research Institutes,2,0.94554,0.94659,0.11224,0.11161,0.71898,0.71849,0.56127,0.55388,151,151,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,Taiwan,2022-10-03,Larval,Larval,Whole Organism,All anatomical structures
71546,SRR21784853,SRX17779291,SRS15305446,SRP400746,PRJNA883515,Danio rerio Transcriptome or Gene expression,PRJNA883515,Other,Carassius auratus complex formula CACF is a combination prescription of traditional Chinese medicine composed of extracts from C. auratus  Rhizoma dioscoreae  Lycium chinense  and Rehmannia glutinosa Libosch. Previously  CACF has been proven the anti diabetes effect on HFD treatment mice model. In this study  we used zebrafish model to observe whether CACF have anti cancer effect or not.,,,,Model organism or animal sample from Danio rerio CACF 2 1,CD36 CACF 2 1,,ecotype:Taiwan  ROC|age:15 dpf|dev stage:larvae|sex:not determined|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of CD36 with CACF treatment fish 1 1,T15D 24 C 2 1,T15D 24 C 2 1,the zebrafish larvae fed with hight fat diet and treat with CACF everyday from 5dpf to 15 dpf and fast for two days  then sacrificed to extract the total RNA,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiScanSQ,,SRP400746,,,T15D_24_C_2_1_paired T15D_24_C_2_2_paired,fastq fastq,3981831028.0,13417594.0,T15D 24 C 2 1 paired,0:148.59 1:148.17,A:1093541197;C:886197071;G:886629442;T:1115421463;N:41855,148,148,,,1093541197,886197071,886629442,1115421463,41855,SRX17779291,SRS15305446,SRA1511182,National Health Research Institutes|Institute of Molecular and Genomic Medicine,National Health Research Institutes,2,0.94081,0.94152,0.10901,0.10793,0.70964,0.70855,0.602,0.60183,151,151,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,Taiwan,2022-10-03,Larval,Larval,Whole Organism,All anatomical structures
71547,SRR21784854,SRX17779290,SRS15305445,SRP400746,PRJNA883515,Danio rerio Transcriptome or Gene expression,PRJNA883515,Other,Carassius auratus complex formula CACF is a combination prescription of traditional Chinese medicine composed of extracts from C. auratus  Rhizoma dioscoreae  Lycium chinense  and Rehmannia glutinosa Libosch. Previously  CACF has been proven the anti diabetes effect on HFD treatment mice model. In this study  we used zebrafish model to observe whether CACF have anti cancer effect or not.,,,,Model organism or animal sample from Danio rerio CACF 4 1,CD36 CACF 4 1,,ecotype:Taiwan  ROC|age:15 dpf|dev stage:larvae|sex:not determined|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of CD36 with CACF treatment fish 2 1,T15D 24 C 4 1,T15D 24 C 4 1,the zebrafish larvae fed with hight fat diet and treat with CACF everyday from 5dpf to 15 dpf and fast for two days  then sacrificed to extract the total RNA,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiScanSQ,,SRP400746,,,T15D_24_C_4_1_paired T15D_24_C_4_2_paired,fastq fastq,4676812747.0,15766218.0,T15D 24 C 4 1 paired,0:148.04 1:148.60,A:1264847140;C:1061075206;G:1060248997;T:1290593882;N:47522,148,148,,,1264847140,1061075206,1060248997,1290593882,47522,SRX17779290,SRS15305445,SRA1511182,National Health Research Institutes|Institute of Molecular and Genomic Medicine,National Health Research Institutes,2,0.92949,0.93109,0.12219,0.12166,0.70343,0.70122,0.56431,0.56468,151,151,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,Taiwan,2022-10-03,Larval,Larval,Whole Organism,All anatomical structures
71548,SRR21784855,SRX17779289,SRS15305444,SRP400746,PRJNA883515,Danio rerio Transcriptome or Gene expression,PRJNA883515,Other,Carassius auratus complex formula CACF is a combination prescription of traditional Chinese medicine composed of extracts from C. auratus  Rhizoma dioscoreae  Lycium chinense  and Rehmannia glutinosa Libosch. Previously  CACF has been proven the anti diabetes effect on HFD treatment mice model. In this study  we used zebrafish model to observe whether CACF have anti cancer effect or not.,,,,Model organism or animal sample from Danio rerio Normal diet 2 1,CD36 normal diet 2 1,,ecotype:Taiwan  ROC|age:15 dpf|dev stage:larvae|sex:not determined|tissue:whole fish|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of CD36 normal diet fish 2 1,C15D 12 2 1,C15D 12 2 1,the zebrafish larvae fed with normal diet from 5dpf to 15 dpf and fast for two days  then sacrificed to extract the total RNA,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiScanSQ,,SRP400746,,,C15D_12_2_1_paired C15D_12_2_2_paired,fastq fastq,4709835299.0,15889935.0,C15D 12 2 1 paired,0:148.38 1:148.02,A:1276830997;C:1066019825;G:1064609195;T:1302325802;N:49480,148,148,,,1276830997,1066019825,1064609195,1302325802,49480,SRX17779289,SRS15305444,SRA1511182,National Health Research Institutes|Institute of Molecular and Genomic Medicine,National Health Research Institutes,2,0.92935,0.9298,0.13602,0.1343,0.70747,0.70788,0.50602,0.50503,151,151,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,Taiwan,2022-10-03,Larval,Larval,Whole Organism,All anatomical structures
72097,SRR22207161,SRX18185147,SRS15683480,SRP406513,PRJNA898663,zebrafish Raw sequence reads,PRJNA898663,Other,High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish,,,,,L3,,isolate:Loxhd1b 3|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RNA: loxhd1b morpholino 3,GCS6,GCS6,Next generation sequencing library preparations were constructed according to the manufacturers protocol.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP406513,,,L3_combined_R1.fastq.gz L3_combined_R2.fastq.gz,fastq fastq,6143010000.0,20476700.0,L3 combined R1.fastq.gz,0:150 1:150,A:1595745772;C:1478410203;G:1489224712;T:1579586384;N:42929,150,150,,,1595745772,1478410203,1489224712,1579586384,42929,SRX18185147,SRS15683480,SRA1535247,Shandong Provincial Hospital|Department of Clinical Laboratory,Shandong Provincial Hospital,2,0.95627,0.95623,0.04743,0.04704,0.70256,0.7068,0.47182,0.4714,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-11-06,Larval,Larval,Undetermined,Undetermined
72098,SRR22207162,SRX18185146,SRS15683479,SRP406513,PRJNA898663,zebrafish Raw sequence reads,PRJNA898663,Other,High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish,,,,,L2,,isolate:Loxhd1b 2|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RNA: loxhd1b morpholino 2,GCS5,GCS5,Next generation sequencing library preparations were constructed according to the manufacturers protocol.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP406513,,,L2_combined_R1.fastq.gz L2_combined_R2.fastq.gz,fastq fastq,6424738200.0,21415794.0,L2 combined R1.fastq.gz,0:150 1:150,A:1671624607;C:1543603819;G:1552613091;T:1656850928;N:45755,150,150,,,1671624607,1543603819,1552613091,1656850928,45755,SRX18185146,SRS15683479,SRA1535247,Shandong Provincial Hospital|Department of Clinical Laboratory,Shandong Provincial Hospital,2,0.95661,0.95668,0.04747,0.04742,0.68856,0.69179,0.47314,0.48109,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-11-06,Larval,Larval,Undetermined,Undetermined
72099,SRR22207163,SRX18185145,SRS15683478,SRP406513,PRJNA898663,zebrafish Raw sequence reads,PRJNA898663,Other,High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish,,,,,L1,,isolate:Loxhd1b 1|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RNA: loxhd1b morpholino 1,GCS4,GCS4,Next generation sequencing library preparations were constructed according to the manufacturers protocol.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP406513,,,L1_combined_R1.fastq.gz L1_combined_R2.fastq.gz,fastq fastq,7191693900.0,23972313.0,L1 combined R1.fastq.gz,0:150 1:150,A:1864938414;C:1733274971;G:1741654024;T:1851774229;N:52262,150,150,,,1864938414,1733274971,1741654024,1851774229,52262,SRX18185145,SRS15683478,SRA1535247,Shandong Provincial Hospital|Department of Clinical Laboratory,Shandong Provincial Hospital,2,0.95471,0.95533,0.05078,0.05161,0.67844,0.68191,0.47707,0.48159,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-11-06,Larval,Larval,Undetermined,Undetermined
72100,SRR22207164,SRX18185144,SRS15683477,SRP406513,PRJNA898663,zebrafish Raw sequence reads,PRJNA898663,Other,High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish,,,,,C3,,isolate:control 3|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RNA: control 3,GCS3,GCS3,Next generation sequencing library preparations were constructed according to the manufacturers protocol.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP406513,,,C3_combined_R1.fastq.gz C3_combined_R2.fastq.gz,fastq fastq,6332394900.0,21107983.0,C3 combined R1.fastq.gz,0:150 1:150,A:1627554436;C:1541108160;G:1544576517;T:1619111254;N:44533,150,150,,,1627554436,1541108160,1544576517,1619111254,44533,SRX18185144,SRS15683477,SRA1535247,Shandong Provincial Hospital|Department of Clinical Laboratory,Shandong Provincial Hospital,2,0.95993,0.95944,0.04103,0.04133,0.68296,0.68779,0.48812,0.47385,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-11-06,Larval,Larval,Undetermined,Undetermined
72101,SRR22207165,SRX18185143,SRS15683476,SRP406513,PRJNA898663,zebrafish Raw sequence reads,PRJNA898663,Other,High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish,,,,,C2,,isolate:control 2|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RNA: control 2,GCS2,GCS2,Next generation sequencing library preparations were constructed according to the manufacturers protocol.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP406513,,,C2_combined_R1.fastq.gz C2_combined_R2.fastq.gz,fastq fastq,6442334100.0,21474447.0,C2 combined R1.fastq.gz,0:150 1:150,A:1656988931;C:1570298030;G:1573573169;T:1641411583;N:62387,150,150,,,1656988931,1570298030,1573573169,1641411583,62387,SRX18185143,SRS15683476,SRA1535247,Shandong Provincial Hospital|Department of Clinical Laboratory,Shandong Provincial Hospital,2,0.95971,0.96117,0.03893,0.03968,0.70692,0.71169,0.47551,0.47899,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-11-06,Larval,Larval,Undetermined,Undetermined
72102,SRR22207166,SRX18185142,SRS15683475,SRP406513,PRJNA898663,zebrafish Raw sequence reads,PRJNA898663,Other,High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish,,,,,C1,,isolate:control 1|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish RNA: control 1,GCS1,GCS1,Next generation sequencing library preparations were constructed according to the manufacturers protocol.,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP406513,,,C1_combined_R1.fastq.gz C1_combined_R2.fastq.gz,fastq fastq,6508720200.0,21695734.0,C1 combined R1.fastq.gz,0:150 1:150,A:1679478806;C:1581181952;G:1586326453;T:1661672060;N:60929,150,150,,,1679478806,1581181952,1586326453,1661672060,60929,SRX18185142,SRS15683475,SRA1535247,Shandong Provincial Hospital|Department of Clinical Laboratory,Shandong Provincial Hospital,2,0.9598,0.96029,0.04091,0.04106,0.70834,0.71171,0.4832,0.48953,150,150,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2022-11-06,Larval,Larval,Undetermined,Undetermined
77327,SRR065197,SRX026483,SRS114570,SRP003472,PRJXX3472,RNA Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation,ZF_U1C,Transcriptome Analysis,Precise five prime splice site recognition is essential for both constitutive and regulated pre mRNA splicing. The U1 snRNP specific protein U1C is involved in this first step of spliceosome assembly and important for stabilizing early splicing complexes. We used an embryonically lethal U1C knockout mutant zebrafish  hi1371  to investigate the potential genomewide role of U1C for splicing regulation. Surprisingly  genomewide RNA Seq analysis of mutant versus wildtype embryos revealed a large set of specific target genes that changed their alternative splicing patterns in the absence of U1C. In sum  our findings provide evidence for a new role of a general snRNP protein  U1C  as a mediator of alternative splicing regulation.,,pubmed:21468032,Total RNA from 3 dpf mutant zebrafish embryos was prepared by TRIzol reagent Invitrogen and RNeasy kit QIAGEN. Equal amounts of total RNA were subjected to reverse transcription  using the qScript cDNA synthesis kit Quanta Biosciences. Control reactions were done in the absence of reverse transcriptase.  Total RNA was processed by Illumina standard protocols to prepare the RNA Seq library.,Total RNA from 3 dpf mutant zebrafish embryos,MUT,,,,,,,,,,,3 dpf mutant zebrafish embryos,MUT,mut,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer II,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP003472,,,MUT_1.txt.tar.gz MUT_2N.txt.tar.gz MUT_3.txt.tar.gz,fastq fastq fastq,2418427464.0,31821414.0,MUT,0:76,A:604956506;C:600954722;G:608767958;T:600808464;N:2939814,76,,,,604956506,600954722,608767958,600808464,2939814,SRX026483,SRS114570,,,Justus-Liebig University Giessen,1,0.91109,,0.077,,0.71445,,0.44387,,76,,B,,usable mapping rate,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,Germany,2011-03-31,Larval,Larval,Embryo Imprecise,All anatomical structures
77328,SRR065196,SRX026482,SRS114569,SRP003472,PRJXX3472,RNA Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation,ZF_U1C,Transcriptome Analysis,Precise five prime splice site recognition is essential for both constitutive and regulated pre mRNA splicing. The U1 snRNP specific protein U1C is involved in this first step of spliceosome assembly and important for stabilizing early splicing complexes. We used an embryonically lethal U1C knockout mutant zebrafish  hi1371  to investigate the potential genomewide role of U1C for splicing regulation. Surprisingly  genomewide RNA Seq analysis of mutant versus wildtype embryos revealed a large set of specific target genes that changed their alternative splicing patterns in the absence of U1C. In sum  our findings provide evidence for a new role of a general snRNP protein  U1C  as a mediator of alternative splicing regulation.,,pubmed:21468032,Total RNA from 3 dpf wildtype zebrafish embryos was prepared by TRIzol reagent Invitrogen and RNeasy kit QIAGEN. Equal amounts of total RNA were subjected to reverse transcription  using the qScript cDNA synthesis kit Quanta Biosciences. Control reactions were done in the absence of reverse transcriptase.  Total RNA was processed by Illumina standard protocols to prepare the RNA Seq library.,Total RNA from 3 dpf wildtype zebrafish embryos,WT,,,,,,,,,,,3 dpf wildtype embryos,WT,wt,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer II,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP003472,,,WT_1.txt.tar WT_2.txt.tar.gz WT_3.txt.tar.gz WT_4.txt.tar.gz,fastq fastq fastq fastq,2697785376.0,35497176.0,WT,0:76,A:676186765;C:669131645;G:670872323;T:676745206;N:4849437,76,,,,676186765,669131645,670872323,676745206,4849437,SRX026482,SRS114569,,,Justus-Liebig University Giessen,1,0.9435,,0.087,,0.71429,,0.46075,,76,,B,,usable mapping rate,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,Germany,2011-03-31,Larval,Larval,Embryo Imprecise,All anatomical structures