rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
0,DRR314108,DRX303511,DRS233566,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp  the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of wild type sibling sample3,SAMD00399013,,sample name:rna rw337 48hpf WT rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399013,DRX303511,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399013,,,,23076492885.0,76679376.0,DRR314108,0:150.51 1:150.44,A:6146969533;C:5373690527;G:5458576301;T:6095818756;N:1437768,150,150,,,6146969533,5373690527,5458576301,6095818756,1437768,DRX303511,DRS233566,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.94223,0.94614,0.10721,0.10288,0.68745,0.68621,0.4728,0.47157,151,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise
1,DRR314107,DRX303510,DRS233565,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp  the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of wild type sibling sample2,SAMD00399012,,sample name:rna rw337 48hpf WT rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399012,DRX303510,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399012,,,,26091623771.0,86694066.0,DRR314107,0:150.51 1:150.45,A:6955374552;C:6050013285;G:6169385096;T:6915281392;N:1569446,150,150,,,6955374552,6050013285,6169385096,6915281392,1569446,DRX303510,DRS233565,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.94028,0.94277,0.11038,0.10462,0.68288,0.68134,0.46992,0.47227,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise
2,DRR314106,DRX303509,DRS233564,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp  the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of wild type sibling sample1,SAMD00399011,,sample name:rna rw337 48hpf WT rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399011,DRX303509,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399011,,,,23833525756.0,79191795.0,DRR314106,0:150.51 1:150.44,A:6324521565;C:5556755459;G:5694025045;T:6256748423;N:1475264,150,150,,,6324521565,5556755459,5694025045,6256748423,1475264,DRX303509,DRS233564,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.94723,0.94975,0.09521,0.09114,0.6776,0.67819,0.46045,0.46153,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise
3,DRR314105,DRX303508,DRS233563,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp  the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of banp mutant sample3,SAMD00399010,,sample name:rna rw337 48hpf Mutant rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399010,DRX303508,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399010,,,,27688386114.0,92009317.0,DRR314105,0:150.49 1:150.44,A:7681451080;C:6071566134;G:6242782106;T:7690830655;N:1756139,150,150,,,7681451080,6071566134,6242782106,7690830655,1756139,DRX303508,DRS233563,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.91038,0.91556,0.17971,0.16967,0.67718,0.67716,0.47042,0.46425,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise
4,DRR314104,DRX303507,DRS233562,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp  the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of banp mutant sample2,SAMD00399009,,sample name:rna rw337 48hpf Mutant rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399009,DRX303507,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399009,,,,22970994572.0,76322352.0,DRR314104,0:150.52 1:150.46,A:6142535654;C:5310453740;G:5430124468;T:6086516676;N:1364034,150,150,,,6142535654,5310453740,5430124468,6086516676,1364034,DRX303507,DRS233562,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.93707,0.94063,0.12175,0.11613,0.67825,0.67649,0.46485,0.46905,147,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise
5,DRR314103,DRX303506,DRS233561,DRP008373,PRJDB12134,Comparison of expression profile between banp mutant and wildtype sibling.,DRP008373,Other,To characterize the physiological function of Banp  the expression profile of banp mutant and wild type sibling was obtained by ATAC sequencing and RNA sequencing. All data were obtained using embryo heads at 48 hpf.,,,,RNA seq of banp mutant sample1,SAMD00399008,,sample name:rna rw337 48hpf Mutant rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00399008,DRX303506,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008373,Illumina NovaSeq 6000 paired end sequencing of SAMD00399008,,,,23637901630.0,78541449.0,DRR314103,0:150.51 1:150.45,A:6359178134;C:5420730443;G:5530700546;T:6325864263;N:1428244,150,150,,,6359178134,5420730443,5530700546,6325864263,1428244,DRX303506,DRS233561,DRA012572,OIST|Developmental Neurobiology Unit,Okinawa Institute of Science and Technology,2,0.9308,0.93545,0.13172,0.12462,0.68219,0.6814,0.46842,0.46984,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,Japan,2022-04-01,Hatching,Embryo,Undetermined,Embryo Imprecise
6,DRR315802,DRX305194,DRS231989,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample4,SAMD00400823,,sample name:rw147 2.5dpf wildtype  rep 4|biological replicate:4,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400823,DRX305194,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400823,,,,10262353995.0,34151547.0,DRR315802,0:150.27 1:150.22,A:2735078560;C:2386126821;G:2433638250;T:2707202814;N:307550,150,150,,,2735078560,2386126821,2433638250,2707202814,307550,DRX305194,DRS231989,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95231,0.95295,0.09229,0.08773,0.71819,0.72107,0.46746,0.46617,151,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
7,DRR315801,DRX305193,DRS231988,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample3,SAMD00400822,,sample name:rw147 2.5dpf wildtype  rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400822,DRX305193,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400822,,,,11516368634.0,38355888.0,DRR315801,0:150.15 1:150.10,A:3080341643;C:2678048339;G:2713051368;T:3044449330;N:477954,150,150,,,3080341643,2678048339,2713051368,3044449330,477954,DRX305193,DRS231988,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95353,0.95634,0.08909,0.08533,0.71374,0.71252,0.45986,0.46059,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
8,DRR315800,DRX305192,DRS231987,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample2,SAMD00400821,,sample name:rw147 2.5dpf wildtype  rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400821,DRX305192,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400821,,,,8814057148.0,29367513.0,DRR315800,0:150.09 1:150.04,A:2350403211;C:2054073465;G:2083044327;T:2326181188;N:354957,150,150,,,2350403211,2054073465,2083044327,2326181188,354957,DRX305192,DRS231987,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95287,0.95643,0.0891,0.08586,0.70309,0.70252,0.46384,0.46281,151,149,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
9,DRR315799,DRX305191,DRS231986,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,wildtype sibling sample1,SAMD00400820,,sample name:rw147 2.5dpf wildtype  rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400820,DRX305191,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400820,,,,10491955578.0,34900682.0,DRR315799,0:150.34 1:150.28,A:2796521111;C:2446218287;G:2483414564;T:2765477785;N:323831,150,150,,,2796521111,2446218287,2483414564,2765477785,323831,DRX305191,DRS231986,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.9539,0.95646,0.08185,0.07808,0.70025,0.70013,0.44713,0.44987,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
10,DRR315798,DRX305190,DRS231985,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample4,SAMD00400819,,sample name:rw147 2.5dpf Mutant  rep 4|biological replicate:4,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400819,DRX305190,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400819,,,,9197802250.0,30604326.0,DRR315798,0:150.30 1:150.24,A:2468967963;C:2130949980;G:2158692262;T:2438931017;N:261028,150,150,,,2468967963,2130949980,2158692262,2438931017,261028,DRX305190,DRS231985,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95159,0.95439,0.10146,0.09758,0.71995,0.71983,0.46519,0.46797,150,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
11,DRR315797,DRX305189,DRS231984,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample3,SAMD00400818,,sample name:rw147 2.5dpf Mutant  rep 3|biological replicate:3,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400818,DRX305189,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400818,,,,10498982078.0,34931731.0,DRR315797,0:150.31 1:150.25,A:2804535103;C:2445295179;G:2478768789;T:2770066062;N:316945,150,150,,,2804535103,2445295179,2478768789,2770066062,316945,DRX305189,DRS231984,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95448,0.95652,0.0939,0.0887,0.71796,0.71847,0.46335,0.46615,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
12,DRR315796,DRX305188,DRS231983,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample2,SAMD00400817,,sample name:rw147 2.5dpf Mutant  rep 2|biological replicate:2,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400817,DRX305188,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400817,,,,9850145990.0,32782079.0,DRR315796,0:150.26 1:150.21,A:2636205537;C:2286508705;G:2319481100;T:2607600624;N:350024,150,150,,,2636205537,2286508705,2319481100,2607600624,350024,DRX305188,DRS231983,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.95193,0.95472,0.09722,0.09375,0.7138,0.71299,0.45542,0.45994,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
13,DRR315795,DRX305187,DRS231982,DRP008318,PRJDB12206,Transcriptome analysis of strip1 mutant and wildtype zebrafish eyes,DRP008318,Transcriptome Analysis,"Strip1 plays essential roles in the developing zebrafish retinal neural circuit. To identify the underlying molecular mechanisms at the transcriptomic level  transcriptome of strip1 mutant ""rw147"" eye cups at 2.5 dpf was compared to that of  wild type siblings using bulk RNA sequencing analysis.",,,,strip1 mutant sample1,SAMD00400816,,sample name:rw147 2.5dpf Mutant  rep 1|biological replicate:1,,,,,,,,,Illumina NovaSeq 6000 paired end sequencing of SAMD00400816,DRX305187,1,1,1,,RNA-Seq,TRANSCRIPTOMIC,PolyA,PAIRED,ILLUMINA,Illumina NovaSeq 6000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>151</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>76</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP008318,Illumina NovaSeq 6000 paired end sequencing of SAMD00400816,,,,9542039835.0,31780260.0,DRR315795,0:150.15 1:150.10,A:2543384204;C:2224374632;G:2258183435;T:2515655339;N:442225,150,150,,,2543384204,2224374632,2258183435,2515655339,442225,DRX305187,DRS231982,DRA012640,OIST|Developmental Neurobiology Unit,Developmental Neurobiology Unit,2,0.9528,0.95591,0.08656,0.0828,0.70352,0.70331,0.45316,0.44914,151,151,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,bulk,bulk,,Unknown,2022-03-16,Hatching,Embryo,Undetermined,Embryo Imprecise
22704,ERR961005,ERX1038052,ERS789977,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482573,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482573|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 96 sc 2204051|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCTAGGGAAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 96 sc 2204051|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#96,12738363,Illumina sequencing of library 12738363  constructed from sample accession ERS789977 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCTAGGGAAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#96.cram,cram,14889180.0,115420.0,SC RUN 15298 1#96,0:54 1:75,A:3973400;C:3000662;G:4402270;T:3512848;N:0,54,75,,,3973400,3000662,4402270,3512848,0,ERX1038052,ERS789977,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0003,0.00741,0.00028,0.00599,0.99997,0.99997,1.0,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22705,ERR961004,ERX1038051,ERS789976,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482572,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482572|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 95 sc 2204050|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CAGAAAACCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 95 sc 2204050|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#95,12738362,Illumina sequencing of library 12738362  constructed from sample accession ERS789976 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CAGAAAACCCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#95.cram,cram,19846134.0,153846.0,SC RUN 15298 1#95,0:54 1:75,A:5020027;C:3248457;G:6979506;T:4598140;N:4,54,75,,,5020027,3248457,6979506,4598140,4,ERX1038051,ERS789976,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00018,0.00811,0.00017,0.00589,1.0,0.99993,,0.66666,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22706,ERR961003,ERX1038050,ERS789975,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482571,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:19:28Z|External Id:SAMEA3482571|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:19:28Z|INSDC status:public|Submitter Id:crest 1st 96 94 sc 2204049|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGAGTCACACG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 94 sc 2204049|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#94,12738361,Illumina sequencing of library 12738361  constructed from sample accession ERS789975 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGAGTCACACG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#94.cram,cram,24167118.0,187342.0,SC RUN 15298 1#94,0:54 1:75,A:6063633;C:4973842;G:8015996;T:5113647;N:0,54,75,,,6063633,4973842,8015996,5113647,0,ERX1038050,ERS789975,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,7e-05,0.00952,6e-05,0.00634,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22707,ERR961002,ERX1038049,ERS789974,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482570,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482570|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 93 sc 2204048|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CCGGGCGGAGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 93 sc 2204048|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#93,12738360,Illumina sequencing of library 12738360  constructed from sample accession ERS789974 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CCGGGCGGAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#93.cram,cram,11224032.0,87008.0,SC RUN 15298 1#93,0:54 1:75,A:2871437;C:2490429;G:3613666;T:2248500;N:0,54,75,,,2871437,2490429,3613666,2248500,0,ERX1038049,ERS789974,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00032,0.04075,0.00031,0.02886,1.0,0.99995,,0.42857,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22708,ERR961001,ERX1038048,ERS789973,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482569,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482569|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 92 sc 2204047|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATGCGGGGCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 92 sc 2204047|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#92,12738359,Illumina sequencing of library 12738359  constructed from sample accession ERS789973 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATGCGGGGCGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#92.cram,cram,18725382.0,145158.0,SC RUN 15298 1#92,0:54 1:75,A:4587008;C:4553072;G:5882895;T:3702406;N:1,54,75,,,4587008,4553072,5882895,3702406,1,ERX1038048,ERS789973,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00019,0.02076,0.00017,0.00494,0.99997,0.99995,0.0,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22709,ERR961000,ERX1038047,ERS789972,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482568,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:19:28Z|External Id:SAMEA3482568|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:19:28Z|INSDC status:public|Submitter Id:crest 1st 96 91 sc 2204046|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAAACTACGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 91 sc 2204046|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#91,12738358,Illumina sequencing of library 12738358  constructed from sample accession ERS789972 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTAAACTACGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#91.cram,cram,24251097.0,187993.0,SC RUN 15298 1#91,0:54 1:75,A:6954064;C:3962974;G:7798387;T:5535672;N:0,54,75,,,6954064,3962974,7798387,5535672,0,ERX1038047,ERS789972,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00012,0.00847,0.00011,0.00846,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22710,ERR960999,ERX1038046,ERS789971,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482567,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482567|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 90 sc 2204045|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATATACCAGAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 90 sc 2204045|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#90,12738357,Illumina sequencing of library 12738357  constructed from sample accession ERS789971 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATATACCAGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#90.cram,cram,45713601.0,354369.0,SC RUN 15298 1#90,0:54 1:75,A:12265574;C:7703653;G:15245705;T:10498669;N:0,54,75,,,12265574,7703653,15245705,10498669,0,ERX1038046,ERS789971,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00011,0.00324,0.0001,0.00283,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22711,ERR960998,ERX1038045,ERS789970,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482566,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482566|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 89 sc 2204044|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATACCCAGCCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 89 sc 2204044|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#89,12738356,Illumina sequencing of library 12738356  constructed from sample accession ERS789970 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATACCCAGCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#89.cram,cram,39143760.0,303440.0,SC RUN 15298 1#89,0:54 1:75,A:10024128;C:6711606;G:13927597;T:8480429;N:0,54,75,,,10024128,6711606,13927597,8480429,0,ERX1038045,ERS789970,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,9e-05,0.0087,8e-05,0.00724,0.99997,0.99997,1.0,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22712,ERR960997,ERX1038044,ERS789969,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482565,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:19:28Z|External Id:SAMEA3482565|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:19:28Z|INSDC status:public|Submitter Id:crest 1st 96 88 sc 2204043|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATCAATCCCAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 88 sc 2204043|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#88,12738355,Illumina sequencing of library 12738355  constructed from sample accession ERS789969 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATCAATCCCAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#88.cram,cram,25036449.0,194081.0,SC RUN 15298 1#88,0:54 1:75,A:6582651;C:4370853;G:8489315;T:5593627;N:3,54,75,,,6582651,4370853,8489315,5593627,3,ERX1038044,ERS789969,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0001,0.00303,9e-05,0.00288,1.0,0.99993,,0.5,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22713,ERR960996,ERX1038043,ERS789968,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482564,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482564|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 87 sc 2204042|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCTCCACCAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 87 sc 2204042|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#87,12738354,Illumina sequencing of library 12738354  constructed from sample accession ERS789968 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCTCCACCAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#87.cram,cram,43624188.0,338172.0,SC RUN 15298 1#87,0:54 1:75,A:12321864;C:6670711;G:15340178;T:9291435;N:0,54,75,,,12321864,6670711,15340178,9291435,0,ERX1038043,ERS789968,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00019,0.02873,0.00018,0.02154,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22714,ERR960995,ERX1038042,ERS789967,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482563,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482563|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 86 sc 2204041|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGGGGCCGGAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 86 sc 2204041|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#86,12738353,Illumina sequencing of library 12738353  constructed from sample accession ERS789967 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGGGGCCGGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#86.cram,cram,60045630.0,465470.0,SC RUN 15298 1#86,0:54 1:75,A:13613994;C:14453639;G:19961294;T:12016700;N:3,54,75,,,13613994,14453639,19961294,12016700,3,ERX1038042,ERS789967,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00017,0.014,0.00016,0.01272,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22715,ERR960956,ERX1038003,ERS789928,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482524,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482524|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 47 sc 2204002|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GATTGACCAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 47 sc 2204002|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#47,12738314,Illumina sequencing of library 12738314  constructed from sample accession ERS789928 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GATTGACCAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#47.cram,cram,33191442.0,257298.0,SC RUN 15298 1#47,0:54 1:75,A:9485930;C:5670329;G:10525443;T:7509740;N:0,54,75,,,9485930,5670329,10525443,7509740,0,ERX1038003,ERS789928,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00016,0.01185,0.00015,0.00968,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22716,ERR960955,ERX1038002,ERS789927,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482523,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:19:09Z|External Id:SAMEA3482523|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:19:09Z|INSDC status:public|Submitter Id:crest 1st 96 46 sc 2204001|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGTATAAAACC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 46 sc 2204001|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#46,12738313,Illumina sequencing of library 12738313  constructed from sample accession ERS789927 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGTATAAAACC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#46.cram,cram,5444316.0,42204.0,SC RUN 15298 1#46,0:54 1:75,A:1570912;C:936717;G:1677489;T:1259198;N:0,54,75,,,1570912,936717,1677489,1259198,0,ERX1038002,ERS789927,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,9e-05,0.00521,8e-05,0.0052,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22717,ERR960954,ERX1038001,ERS789926,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482522,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482522|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 45 sc 2204000|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTGGACAGGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 45 sc 2204000|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#45,12738312,Illumina sequencing of library 12738312  constructed from sample accession ERS789926 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TTGGACAGGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#45.cram,cram,15920019.0,123411.0,SC RUN 15298 1#45,0:54 1:75,A:4324589;C:3284893;G:5029487;T:3281049;N:1,54,75,,,4324589,3284893,5029487,3281049,1,ERX1038001,ERS789926,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00016,0.00866,0.00015,0.00769,1.0,0.99997,,1.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22718,ERR960953,ERX1038000,ERS789925,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482521,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:54:35Z|External Id:SAMEA3482521|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:54:35Z|INSDC status:public|Submitter Id:crest 1st 96 44 sc 2203999|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGACTGCAGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 44 sc 2203999|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#44,12738311,Illumina sequencing of library 12738311  constructed from sample accession ERS789925 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGACTGCAGCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#44.cram,cram,16430859.0,127371.0,SC RUN 15298 1#44,0:54 1:75,A:4272449;C:3404559;G:5365020;T:3388813;N:18,54,75,,,4272449,3404559,5365020,3388813,18,ERX1038000,ERS789925,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00024,0.00965,0.00023,0.00137,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22719,ERR960952,ERX1037999,ERS789924,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482520,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482520|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 43 sc 2203998|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCGCACCCGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 43 sc 2203998|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#43,12738310,Illumina sequencing of library 12738310  constructed from sample accession ERS789924 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TTCGCACCCGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#43.cram,cram,75532338.0,585522.0,SC RUN 15298 1#43,0:54 1:75,A:20672274;C:12490010;G:26819622;T:15550432;N:0,54,75,,,20672274,12490010,26819622,15550432,0,ERX1037999,ERS789924,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00019,0.01159,0.00018,0.00709,0.99997,0.99993,0.0,0.16666,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22720,ERR960951,ERX1037998,ERS789923,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482519,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482519|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 42 sc 2203997|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGAAGTGGAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 42 sc 2203997|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#42,12738309,Illumina sequencing of library 12738309  constructed from sample accession ERS789923 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTGAAGTGGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#42.cram,cram,13327377.0,103313.0,SC RUN 15298 1#42,0:54 1:75,A:3578326;C:2841503;G:4056273;T:2851275;N:0,54,75,,,3578326,2841503,4056273,2851275,0,ERX1037998,ERS789923,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00114,0.05155,0.00113,0.02989,1.0,0.99993,,0.04761,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22721,ERR960950,ERX1037997,ERS789922,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482518,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482518|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 41 sc 2203996|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCACTGGGCGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 41 sc 2203996|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#41,12738308,Illumina sequencing of library 12738308  constructed from sample accession ERS789922 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCACTGGGCGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#41.cram,cram,9867081.0,76489.0,SC RUN 15298 1#41,0:54 1:75,A:2514548;C:2124682;G:3285203;T:1942647;N:1,54,75,,,2514548,2124682,3285203,1942647,1,ERX1037997,ERS789922,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00013,0.0,0.00012,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22722,ERR960949,ERX1037996,ERS789921,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482517,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:19:09Z|External Id:SAMEA3482517|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:19:09Z|INSDC status:public|Submitter Id:crest 1st 96 40 sc 2203995|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CCTTGCGACAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 40 sc 2203995|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#40,12738307,Illumina sequencing of library 12738307  constructed from sample accession ERS789921 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CCTTGCGACAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#40.cram,cram,245616.0,1904.0,SC RUN 15298 1#40,0:54 1:75,A:64778;C:48248;G:78655;T:53935;N:0,54,75,,,64778,48248,78655,53935,0,ERX1037996,ERS789921,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22723,ERR960948,ERX1037995,ERS789920,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482516,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482516|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 39 sc 2203994|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGGACAGAAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 39 sc 2203994|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#39,12738306,Illumina sequencing of library 12738306  constructed from sample accession ERS789920 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGGACAGAAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#39.cram,cram,8002515.0,62035.0,SC RUN 15298 1#39,0:54 1:75,A:1871460;C:1976682;G:2395004;T:1759369;N:0,54,75,,,1871460,1976682,2395004,1759369,0,ERX1037995,ERS789920,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00028,0.05694,0.00027,0.04626,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22724,ERR960947,ERX1037994,ERS789919,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482515,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:54:35Z|External Id:SAMEA3482515|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:54:35Z|INSDC status:public|Submitter Id:crest 1st 96 38 sc 2203993|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GACGGCGCACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 38 sc 2203993|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#38,12738305,Illumina sequencing of library 12738305  constructed from sample accession ERS789919 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GACGGCGCACA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#38.cram,cram,30916398.0,239662.0,SC RUN 15298 1#38,0:54 1:75,A:7211897;C:6504780;G:10679577;T:6520143;N:1,54,75,,,7211897,6504780,10679577,6520143,1,ERX1037994,ERS789919,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00025,0.02698,0.00024,0.02074,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22725,ERR960946,ERX1037993,ERS789918,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482514,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482514|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 37 sc 2203992|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ACCGATCCAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 37 sc 2203992|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#37,12738304,Illumina sequencing of library 12738304  constructed from sample accession ERS789918 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACCGATCCAGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#37.cram,cram,15428658.0,119602.0,SC RUN 15298 1#37,0:54 1:75,A:3843582;C:3067810;G:5200852;T:3316414;N:0,54,75,,,3843582,3067810,5200852,3316414,0,ERX1037993,ERS789918,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00049,0.00673,0.00048,0.00474,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22726,ERR960945,ERX1037992,ERS789917,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482513,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482513|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 36 sc 2203991|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGGGGGAAGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 36 sc 2203991|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#36,12738303,Illumina sequencing of library 12738303  constructed from sample accession ERS789917 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGGGGGAAGCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#36.cram,cram,7817658.0,60602.0,SC RUN 15298 1#36,0:54 1:75,A:1817429;C:2011017;G:2352660;T:1636552;N:0,54,75,,,1817429,2011017,2352660,1636552,0,ERX1037992,ERS789917,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00022,0.02117,0.00021,0.02116,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22727,ERR960944,ERX1037991,ERS789916,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482512,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482512|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 35 sc 2203990|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATTCAAGGAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 35 sc 2203990|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#35,12738302,Illumina sequencing of library 12738302  constructed from sample accession ERS789916 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATTCAAGGAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#35.cram,cram,43668048.0,338512.0,SC RUN 15298 1#35,0:54 1:75,A:12292955;C:8007180;G:12781695;T:10586215;N:3,54,75,,,12292955,8007180,12781695,10586215,3,ERX1037991,ERS789916,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00011,0.00903,0.0001,0.00849,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22780,ERR960943,ERX1037990,ERS789915,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482511,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:19:09Z|External Id:SAMEA3482511|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:19:09Z|INSDC status:public|Submitter Id:crest 1st 96 34 sc 2203989|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGAAACGAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 34 sc 2203989|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#34,12738301,Illumina sequencing of library 12738301  constructed from sample accession ERS789915 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TCGAAACGAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#34.cram,cram,11497899.0,89131.0,SC RUN 15298 1#34,0:54 1:75,A:2913172;C:2384082;G:3663956;T:2536689;N:0,54,75,,,2913172,2384082,3663956,2536689,0,ERX1037990,ERS789915,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00031,0.01887,0.0003,0.01729,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22781,ERR960942,ERX1037989,ERS789914,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482510,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482510|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 33 sc 2203988|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GATACACCGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 33 sc 2203988|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#33,12738300,Illumina sequencing of library 12738300  constructed from sample accession ERS789914 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GATACACCGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#33.cram,cram,50492406.0,391414.0,SC RUN 15298 1#33,0:54 1:75,A:13176590;C:9010462;G:17590800;T:10714554;N:0,54,75,,,13176590,9010462,17590800,10714554,0,ERX1037989,ERS789914,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00013,0.00647,0.00012,0.00574,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22782,ERR960941,ERX1037988,ERS789913,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482509,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:54:35Z|External Id:SAMEA3482509|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:54:35Z|INSDC status:public|Submitter Id:crest 1st 96 32 sc 2203987|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCGGGAAAGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 32 sc 2203987|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#32,12738299,Illumina sequencing of library 12738299  constructed from sample accession ERS789913 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCGGGAAAGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#32.cram,cram,27185589.0,210741.0,SC RUN 15298 1#32,0:54 1:75,A:6635817;C:6264964;G:8449157;T:5835651;N:0,54,75,,,6635817,6264964,8449157,5835651,0,ERX1037988,ERS789913,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00022,0.0113,0.00021,0.00736,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22783,ERR960940,ERX1037987,ERS789912,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482508,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482508|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 31 sc 2203986|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGGGACCCACC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 31 sc 2203986|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#31,12738298,Illumina sequencing of library 12738298  constructed from sample accession ERS789912 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGGGACCCACC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#31.cram,cram,68348973.0,529837.0,SC RUN 15298 1#31,0:54 1:75,A:16243624;C:12893169;G:24780639;T:14431540;N:1,54,75,,,16243624,12893169,24780639,14431540,1,ERX1037987,ERS789912,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0002,0.0116,0.00016,0.00834,0.99995,0.99993,1.0,0.14285,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22784,ERR960939,ERX1037986,ERS789911,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482507,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482507|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 30 sc 2203985|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AACATTCACCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 30 sc 2203985|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#30,12738297,Illumina sequencing of library 12738297  constructed from sample accession ERS789911 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AACATTCACCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#30.cram,cram,6248889.0,48441.0,SC RUN 15298 1#30,0:54 1:75,A:1686383;C:998733;G:2153427;T:1410345;N:1,54,75,,,1686383,998733,2153427,1410345,1,ERX1037986,ERS789911,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00013,0.01924,0.00012,0.01153,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22785,ERR960938,ERX1037985,ERS789910,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482506,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482506|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 29 sc 2203984|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CATCAGCGAAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 29 sc 2203984|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#29,12738296,Illumina sequencing of library 12738296  constructed from sample accession ERS789910 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CATCAGCGAAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#29.cram,cram,24479298.0,189762.0,SC RUN 15298 1#29,0:54 1:75,A:6221632;C:4435663;G:8413389;T:5408614;N:0,54,75,,,6221632,4435663,8413389,5408614,0,ERX1037985,ERS789910,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00028,0.04056,0.00027,0.04055,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22786,ERR960937,ERX1037984,ERS789909,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482505,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:39Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482505|INSDC center name:SC|INSDC first public:2015 07 13T15:15:39Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 28 sc 2203983|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGATCGCACAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 28 sc 2203983|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#28,12738295,Illumina sequencing of library 12738295  constructed from sample accession ERS789909 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGATCGCACAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#28.cram,cram,17710023.0,137287.0,SC RUN 15298 1#28,0:54 1:75,A:4304665;C:3798740;G:5877092;T:3729526;N:0,54,75,,,4304665,3798740,5877092,3729526,0,ERX1037984,ERS789909,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00024,0.03618,0.00023,0.03085,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22787,ERR960936,ERX1037983,ERS789908,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482504,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482504|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 27 sc 2203982|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCCAAGGCGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 27 sc 2203982|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#27,12738294,Illumina sequencing of library 12738294  constructed from sample accession ERS789908 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCCAAGGCGCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#27.cram,cram,12727398.0,98662.0,SC RUN 15298 1#27,0:54 1:75,A:3106903;C:2551842;G:4424248;T:2644404;N:1,54,75,,,3106903,2551842,4424248,2644404,1,ERX1037983,ERS789908,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,2e-05,0.00325,1e-05,0.00324,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22788,ERR960935,ERX1037982,ERS789907,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482503,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:54:35Z|External Id:SAMEA3482503|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:54:35Z|INSDC status:public|Submitter Id:crest 1st 96 26 sc 2203981|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCCGGAGCCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 26 sc 2203981|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#26,12738293,Illumina sequencing of library 12738293  constructed from sample accession ERS789907 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TCCCGGAGCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#26.cram,cram,2305488.0,17872.0,SC RUN 15298 1#26,0:54 1:75,A:580154;C:456146;G:790477;T:478710;N:1,54,75,,,580154,456146,790477,478710,1,ERX1037982,ERS789907,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00094,0.2184,0.00093,0.21839,1.0,1.0,,,54,75,T,B,mate1 technical by mapping diff,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22789,ERR960934,ERX1037981,ERS789906,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482502,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482502|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 25 sc 2203980|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTACGGGCCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 25 sc 2203980|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#25,12738292,Illumina sequencing of library 12738292  constructed from sample accession ERS789906 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTTACGGGCCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#25.cram,cram,7033467.0,54523.0,SC RUN 15298 1#25,0:54 1:75,A:1688538;C:1670574;G:2282256;T:1392098;N:1,54,75,,,1688538,1670574,2282256,1392098,1,ERX1037981,ERS789906,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,5e-05,0.00379,4e-05,0.00378,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22790,ERR960932,ERX1037979,ERS789904,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482500,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482500|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 23 sc 2203978|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CTCCACGCAAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 23 sc 2203978|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#23,12738290,Illumina sequencing of library 12738290  constructed from sample accession ERS789904 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CTCCACGCAAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#23.cram,cram,3354.0,26.0,SC RUN 15298 1#23,0:54 1:75,A:779;C:755;G:1090;T:730;N:0,54,75,,,779,755,1090,730,0,ERX1037979,ERS789904,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
22791,ERR960931,ERX1037978,ERS789903,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482499,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482499|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 22 sc 2203977|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGCTTAAGAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 22 sc 2203977|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#22,12738289,Illumina sequencing of library 12738289  constructed from sample accession ERS789903 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGCTTAAGAGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#22.cram,cram,26444226.0,204994.0,SC RUN 15298 1#22,0:54 1:75,A:7537534;C:5267799;G:7724442;T:5914446;N:5,54,75,,,7537534,5267799,7724442,5914446,5,ERX1037978,ERS789903,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00012,0.00941,0.00011,0.0047,1.0,0.99995,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23457,ERR960994,ERX1038041,ERS789966,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482562,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482562|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 85 sc 2204040|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGACCGTGGAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 85 sc 2204040|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#85,12738352,Illumina sequencing of library 12738352  constructed from sample accession ERS789966 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGACCGTGGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#85.cram,cram,20532285.0,159165.0,SC RUN 15298 1#85,0:54 1:75,A:5182290;C:4250086;G:6745863;T:4354046;N:0,54,75,,,5182290,4250086,6745863,4354046,0,ERX1038041,ERS789966,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00034,0.06061,0.00033,0.02635,1.0,0.99995,,0.03846,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23458,ERR960993,ERX1038040,ERS789965,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482561,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:09:07Z|External Id:SAMEA3482561|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:09:07Z|INSDC status:public|Submitter Id:crest 1st 96 84 sc 2204039|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCCCACACCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 84 sc 2204039|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#84,12738351,Illumina sequencing of library 12738351  constructed from sample accession ERS789965 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCCCACACCGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#84.cram,cram,20814537.0,161353.0,SC RUN 15298 1#84,0:54 1:75,A:5039242;C:3899489;G:7621553;T:4254251;N:2,54,75,,,5039242,3899489,7621553,4254251,2,ERX1038040,ERS789965,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00014,0.01459,0.00013,0.00729,1.0,0.99995,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23459,ERR960992,ERX1038039,ERS789964,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482560,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482560|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 83 sc 2204038|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ATCGCATAGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 83 sc 2204038|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#83,12738350,Illumina sequencing of library 12738350  constructed from sample accession ERS789964 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ATCGCATAGCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#83.cram,cram,20918511.0,162159.0,SC RUN 15298 1#83,0:54 1:75,A:5552893;C:3952443;G:6941827;T:4471347;N:1,54,75,,,5552893,3952443,6941827,4471347,1,ERX1038039,ERS789964,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0001,0.01323,8e-05,0.01017,0.99997,0.99997,0.0,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23460,ERR960991,ERX1038038,ERS789963,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482559,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482559|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 82 sc 2204037|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CGATAAAACGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 82 sc 2204037|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#82,12738349,Illumina sequencing of library 12738349  constructed from sample accession ERS789963 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CGATAAAACGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#82.cram,cram,40148799.0,311231.0,SC RUN 15298 1#82,0:54 1:75,A:11158281;C:6748555;G:12906092;T:9335869;N:2,54,75,,,11158281,6748555,12906092,9335869,2,ERX1038038,ERS789963,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00011,0.00423,0.0001,0.00343,1.0,0.99995,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23461,ERR960990,ERX1038037,ERS789962,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482558,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482558|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 81 sc 2204036|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGAAATGGAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 81 sc 2204036|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#81,12738348,Illumina sequencing of library 12738348  constructed from sample accession ERS789962 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGAAATGGAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#81.cram,cram,18901596.0,146524.0,SC RUN 15298 1#81,0:54 1:75,A:4646285;C:3993030;G:5886824;T:4375456;N:1,54,75,,,4646285,3993030,5886824,4375456,1,ERX1038037,ERS789962,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,5e-05,0.00301,4e-05,0.001,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23462,ERR960989,ERX1038036,ERS789961,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482557,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482557|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 80 sc 2204035|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCCCACGAAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 80 sc 2204035|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#80,12738347,Illumina sequencing of library 12738347  constructed from sample accession ERS789961 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTCCCACGAAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#80.cram,cram,20527125.0,159125.0,SC RUN 15298 1#80,0:54 1:75,A:5171194;C:3982656;G:6965832;T:4407443;N:0,54,75,,,5171194,3982656,6965832,4407443,0,ERX1038036,ERS789961,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0002,0.016,0.00019,0.01094,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23463,ERR960988,ERX1038035,ERS789960,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482556,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482556|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 79 sc 2204034|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCGCCATGGGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 79 sc 2204034|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#79,12738346,Illumina sequencing of library 12738346  constructed from sample accession ERS789960 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCGCCATGGGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#79.cram,cram,2488797.0,19293.0,SC RUN 15298 1#79,0:54 1:75,A:619436;C:544485;G:810480;T:514395;N:1,54,75,,,619436,544485,810480,514395,1,ERX1038035,ERS789960,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00019,0.0,0.00018,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23464,ERR960987,ERX1038034,ERS789959,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482555,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482555|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 78 sc 2204033|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGAGCCCGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 78 sc 2204033|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#78,12738345,Illumina sequencing of library 12738345  constructed from sample accession ERS789959 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TAGAGCCCGCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#78.cram,cram,14158782.0,109758.0,SC RUN 15298 1#78,0:54 1:75,A:3556811;C:2613685;G:5029335;T:2958951;N:0,54,75,,,3556811,2613685,5029335,2958951,0,ERX1038034,ERS789959,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00016,0.00293,0.00015,0.00292,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23465,ERR960986,ERX1038033,ERS789958,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482554,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482554|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 77 sc 2204032|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CTAAATACAGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 77 sc 2204032|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#77,12738344,Illumina sequencing of library 12738344  constructed from sample accession ERS789958 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CTAAATACAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#77.cram,cram,35801757.0,277533.0,SC RUN 15298 1#77,0:54 1:75,A:10359476;C:5705406;G:11411528;T:8325347;N:0,54,75,,,10359476,5705406,11411528,8325347,0,ERX1038033,ERS789958,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,6e-05,0.00267,5e-05,0.00221,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23466,ERR960985,ERX1038032,ERS789957,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482553,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482553|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 76 sc 2204031|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATACCAAGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 76 sc 2204031|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#76,12738343,Illumina sequencing of library 12738343  constructed from sample accession ERS789957 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TATACCAAGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#76.cram,cram,32031087.0,248303.0,SC RUN 15298 1#76,0:54 1:75,A:8964675;C:5487121;G:9932429;T:7646862;N:0,54,75,,,8964675,5487121,9932429,7646862,0,ERX1038032,ERS789957,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00024,0.003,0.00022,0.00209,0.99997,0.99995,1.0,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23467,ERR960984,ERX1038031,ERS789956,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482552,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482552|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 75 sc 2204030|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGTTACGAGGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 75 sc 2204030|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#75,12738342,Illumina sequencing of library 12738342  constructed from sample accession ERS789956 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGTTACGAGGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#75.cram,cram,21506364.0,166716.0,SC RUN 15298 1#75,0:54 1:75,A:5612685;C:4593888;G:6734838;T:4564952;N:1,54,75,,,5612685,4593888,6734838,4564952,1,ERX1038031,ERS789956,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00025,0.03013,0.00024,0.02259,1.0,0.99995,,0.8,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23468,ERR960983,ERX1038030,ERS789955,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482551,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482551|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 74 sc 2204029|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCAGTACAAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 74 sc 2204029|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#74,12738341,Illumina sequencing of library 12738341  constructed from sample accession ERS789955 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TCCAGTACAAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#74.cram,cram,14122275.0,109475.0,SC RUN 15298 1#74,0:54 1:75,A:3884298;C:2411666;G:4724071;T:3102240;N:0,54,75,,,3884298,2411666,4724071,3102240,0,ERX1038030,ERS789955,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0007,0.19231,0.00069,0.14903,1.0,0.99997,,0.0,54,75,T,B,mate1 technical by mapping diff,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23469,ERR960982,ERX1038029,ERS789954,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482550,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482550|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 73 sc 2204028|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCATCAGCGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 73 sc 2204028|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#73,12738340,Illumina sequencing of library 12738340  constructed from sample accession ERS789954 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCATCAGCGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#73.cram,cram,22589964.0,175116.0,SC RUN 15298 1#73,0:54 1:75,A:5982465;C:4299951;G:7659219;T:4648329;N:0,54,75,,,5982465,4299951,7659219,4648329,0,ERX1038029,ERS789954,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00024,0.01815,0.00023,0.017,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23470,ERR960930,ERX1037977,ERS789902,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482498,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482498|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 21 sc 2203976|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AAAGAATCGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 21 sc 2203976|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#21,12738288,Illumina sequencing of library 12738288  constructed from sample accession ERS789902 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AAAGAATCGCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#21.cram,cram,13029.0,101.0,SC RUN 15298 1#21,0:54 1:75,A:3504;C:1964;G:4101;T:3460;N:0,54,75,,,3504,1964,4101,3460,0,ERX1037977,ERS789902,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23471,ERR960927,ERX1037974,ERS789899,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482495,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:00Z|External Id:SAMEA3482495|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:00Z|INSDC status:public|Submitter Id:crest 1st 96 18 sc 2203973|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCAATTAGGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 18 sc 2203973|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#18,12738285,Illumina sequencing of library 12738285  constructed from sample accession ERS789899 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCAATTAGGAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#18.cram,cram,387.0,3.0,SC RUN 15298 1#18,0:54 1:75,A:105;C:65;G:121;T:96;N:0,54,75,,,105,65,121,96,0,ERX1037974,ERS789899,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,,,,,,,,,,,,,,,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23472,ERR960923,ERX1037970,ERS789895,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482491,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:53:18Z|External Id:SAMEA3482491|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:53:18Z|INSDC status:public|Submitter Id:crest 1st 96 14 sc 2203969|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGGTGAGAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 14 sc 2203969|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#14,12738281,Illumina sequencing of library 12738281  constructed from sample accession ERS789895 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TAGGTGAGAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#14.cram,cram,7095.0,55.0,SC RUN 15298 1#14,0:54 1:75,A:1662;C:1902;G:1378;T:2153;N:0,54,75,,,1662,1902,1378,2153,0,ERX1037970,ERS789895,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23473,ERR960921,ERX1037968,ERS789893,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482489,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482489|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 12 sc 2203967|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGTACTACGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 12 sc 2203967|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#12,12738279,Illumina sequencing of library 12738279  constructed from sample accession ERS789893 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGTACTACGCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#12.cram,cram,31079196.0,240924.0,SC RUN 15298 1#12,0:54 1:75,A:8578418;C:5741067;G:10187601;T:6572110;N:0,54,75,,,8578418,5741067,10187601,6572110,0,ERX1037968,ERS789893,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,8e-05,0.00727,7e-05,0.00545,1.0,0.99993,,0.66666,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23474,ERR960920,ERX1037967,ERS789892,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482488,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:39Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482488|INSDC center name:SC|INSDC first public:2015 07 13T15:15:39Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 11 sc 2203966|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ACGAGACACCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 11 sc 2203966|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#11,12738278,Illumina sequencing of library 12738278  constructed from sample accession ERS789892 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACGAGACACCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#11.cram,cram,96621.0,749.0,SC RUN 15298 1#11,0:54 1:75,A:22107;C:18689;G:35107;T:20718;N:0,54,75,,,22107,18689,35107,20718,0,ERX1037967,ERS789892,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23475,ERR960919,ERX1037966,ERS789891,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482487,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:53:18Z|External Id:SAMEA3482487|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:53:18Z|INSDC status:public|Submitter Id:crest 1st 96 10 sc 2203965|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CATAATGGCGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 10 sc 2203965|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#10,12738277,Illumina sequencing of library 12738277  constructed from sample accession ERS789891 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CATAATGGCGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#10.cram,cram,24001482.0,186058.0,SC RUN 15298 1#10,0:54 1:75,A:6651632;C:4678282;G:7409968;T:5261600;N:0,54,75,,,6651632,4678282,7409968,5261600,0,ERX1037966,ERS789891,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00017,0.01188,0.00016,0.00965,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23476,ERR960918,ERX1037965,ERS789890,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482486,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482486|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 9 sc 2203964|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACCTAACGCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 9 sc 2203964|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#9,12738276,Illumina sequencing of library 12738276  constructed from sample accession ERS789890 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TACCTAACGCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#9.cram,cram,28715658.0,222602.0,SC RUN 15298 1#9,0:54 1:75,A:8157133;C:4773463;G:9572391;T:6212671;N:0,54,75,,,8157133,4773463,9572391,6212671,0,ERX1037965,ERS789890,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,8e-05,0.01671,7e-05,0.0089,1.0,0.99995,,0.14285,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23568,ERR960981,ERX1038028,ERS789953,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482549,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482549|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 72 sc 2204027|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCTAGACAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 72 sc 2204027|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#72,12738339,Illumina sequencing of library 12738339  constructed from sample accession ERS789953 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTCTAGACAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#72.cram,cram,13198893.0,102317.0,SC RUN 15298 1#72,0:54 1:75,A:3719906;C:2379996;G:4068928;T:3030063;N:0,54,75,,,3719906,2379996,4068928,3030063,0,ERX1038028,ERS789953,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00037,0.01725,0.00036,0.01465,1.0,0.99995,,0.33333,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23569,ERR960980,ERX1038027,ERS789952,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482548,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482548|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 71 sc 2204026|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CTGTGGCCCCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 71 sc 2204026|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#71,12738338,Illumina sequencing of library 12738338  constructed from sample accession ERS789952 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CTGTGGCCCCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#71.cram,cram,5505462.0,42678.0,SC RUN 15298 1#71,0:54 1:75,A:1362048;C:1171299;G:1902386;T:1069729;N:0,54,75,,,1362048,1171299,1902386,1069729,0,ERX1038027,ERS789952,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00042,0.00871,0.00041,0.00435,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23570,ERR960979,ERX1038026,ERS789951,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482547,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482547|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 70 sc 2204025|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCCGCTGAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 70 sc 2204025|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#70,12738337,Illumina sequencing of library 12738337  constructed from sample accession ERS789951 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCCGCTGAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#70.cram,cram,19425207.0,150583.0,SC RUN 15298 1#70,0:54 1:75,A:4779161;C:3953708;G:6541023;T:4151315;N:0,54,75,,,4779161,3953708,6541023,4151315,0,ERX1038026,ERS789951,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00025,0.02849,0.00024,0.02056,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23571,ERR960978,ERX1038025,ERS789950,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482546,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482546|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 69 sc 2204024|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ACCTCCAACCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 69 sc 2204024|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#69,12738336,Illumina sequencing of library 12738336  constructed from sample accession ERS789950 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACCTCCAACCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#69.cram,cram,28993653.0,224757.0,SC RUN 15298 1#69,0:54 1:75,A:7207182;C:4370289;G:11297647;T:6118535;N:0,54,75,,,7207182,4370289,11297647,6118535,0,ERX1038025,ERS789950,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00012,0.00879,0.00011,0.00763,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23572,ERR960977,ERX1038024,ERS789949,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482545,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482545|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 68 sc 2204023|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GCGTCCACACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 68 sc 2204023|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#68,12738335,Illumina sequencing of library 12738335  constructed from sample accession ERS789949 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GCGTCCACACA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#68.cram,cram,20277123.0,157187.0,SC RUN 15298 1#68,0:54 1:75,A:4893608;C:3840767;G:7245378;T:4297370;N:0,54,75,,,4893608,3840767,7245378,4297370,0,ERX1038024,ERS789949,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0001,0.01152,9e-05,0.0,1.0,0.99995,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23573,ERR960976,ERX1038023,ERS789948,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482544,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482544|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 67 sc 2204022|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AATCGTAGCCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 67 sc 2204022|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#67,12738334,Illumina sequencing of library 12738334  constructed from sample accession ERS789948 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AATCGTAGCCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#67.cram,cram,19866129.0,154001.0,SC RUN 15298 1#67,0:54 1:75,A:5307815;C:3777242;G:6536078;T:4244993;N:1,54,75,,,5307815,3777242,6536078,4244993,1,ERX1038023,ERS789948,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00017,0.01078,0.00016,0.00489,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23574,ERR960975,ERX1038022,ERS789947,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482543,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482543|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 66 sc 2204021|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACCTCCCAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 66 sc 2204021|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#66,12738333,Illumina sequencing of library 12738333  constructed from sample accession ERS789947 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TACCTCCCAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#66.cram,cram,40157055.0,311295.0,SC RUN 15298 1#66,0:54 1:75,A:9958996;C:7670132;G:14438018;T:8089908;N:1,54,75,,,9958996,7670132,14438018,8089908,1,ERX1038022,ERS789947,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,5e-05,0.00035,4e-05,0.00029,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23575,ERR960974,ERX1038021,ERS789946,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482542,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482542|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 65 sc 2204020|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGGCTAAAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 65 sc 2204020|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#65,12738332,Illumina sequencing of library 12738332  constructed from sample accession ERS789946 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TAGGCTAAAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#65.cram,cram,21958122.0,170218.0,SC RUN 15298 1#65,0:54 1:75,A:6091716;C:4409837;G:6578733;T:4877835;N:1,54,75,,,6091716,4409837,6578733,4877835,1,ERX1038021,ERS789946,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00039,0.04871,0.00038,0.02287,1.0,0.99987,,0.05714,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23576,ERR960973,ERX1038020,ERS789945,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482541,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482541|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 64 sc 2204019|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGCCGCCAGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 64 sc 2204019|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#64,12738331,Illumina sequencing of library 12738331  constructed from sample accession ERS789945 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTGCCGCCAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#64.cram,cram,4336335.0,33615.0,SC RUN 15298 1#64,0:54 1:75,A:1008355;C:951372;G:1505081;T:871526;N:1,54,75,,,1008355,951372,1505081,871526,1,ERX1038020,ERS789945,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0015,0.05568,0.00149,0.04454,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23577,ERR960972,ERX1038019,ERS789944,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482540,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:08:10Z|External Id:SAMEA3482540|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:08:10Z|INSDC status:public|Submitter Id:crest 1st 96 63 sc 2204018|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGAACTCAGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 63 sc 2204018|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#63,12738330,Illumina sequencing of library 12738330  constructed from sample accession ERS789944 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGAACTCAGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#63.cram,cram,3370383.0,26127.0,SC RUN 15298 1#63,0:54 1:75,A:825139;C:661130;G:1081655;T:802458;N:1,54,75,,,825139,661130,1081655,802458,1,ERX1038019,ERS789944,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00045,0.00232,0.00044,0.00231,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23578,ERR960971,ERX1038018,ERS789943,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482539,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482539|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 62 sc 2204017|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGTGCTCCACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 62 sc 2204017|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#62,12738329,Illumina sequencing of library 12738329  constructed from sample accession ERS789943 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGTGCTCCACA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#62.cram,cram,899259.0,6971.0,SC RUN 15298 1#62,0:54 1:75,A:223754;C:181507;G:305380;T:188618;N:0,54,75,,,223754,181507,305380,188618,0,ERX1038018,ERS789943,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00152,0.0,0.00151,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23579,ERR960970,ERX1038017,ERS789942,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482538,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482538|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 61 sc 2204016|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCAGCCACAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 61 sc 2204016|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#61,12738328,Illumina sequencing of library 12738328  constructed from sample accession ERS789942 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TGCAGCCACAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#61.cram,cram,3164499.0,24531.0,SC RUN 15298 1#61,0:54 1:75,A:766059;C:658494;G:1063345;T:676600;N:1,54,75,,,766059,658494,1063345,676600,1,ERX1038017,ERS789942,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0004,0.09678,0.00039,0.03763,1.0,0.99997,,0.0,54,75,T,B,mate1 technical by mapping diff,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23580,ERR960969,ERX1038016,ERS789941,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482537,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482537|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 60 sc 2204015|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CGCATACGGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 60 sc 2204015|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#60,12738327,Illumina sequencing of library 12738327  constructed from sample accession ERS789941 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CGCATACGGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#60.cram,cram,13108206.0,101614.0,SC RUN 15298 1#60,0:54 1:75,A:3446999;C:2515621;G:4266688;T:2878895;N:3,54,75,,,3446999,2515621,4266688,2878895,3,ERX1038016,ERS789941,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00029,0.02651,0.00028,0.02503,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23581,ERR960917,ERX1037964,ERS789889,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482485,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482485|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 8 sc 2203963|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CAACGCCAAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 8 sc 2203963|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#8,12738275,Illumina sequencing of library 12738275  constructed from sample accession ERS789889 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CAACGCCAAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#8.cram,cram,8936733.0,69277.0,SC RUN 15298 1#8,0:54 1:75,A:2201849;C:1591061;G:2984901;T:2158922;N:0,54,75,,,2201849,1591061,2984901,2158922,0,ERX1037964,ERS789889,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0002,0.01794,0.00019,0.01569,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23582,ERR960916,ERX1037963,ERS789888,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482484,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482484|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 7 sc 2203962|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGGCTCCGACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 7 sc 2203962|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#7,12738274,Illumina sequencing of library 12738274  constructed from sample accession ERS789888 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GGGCTCCGACA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#7.cram,cram,12373293.0,95917.0,SC RUN 15298 1#7,0:54 1:75,A:2949521;C:2636465;G:4216034;T:2571272;N:1,54,75,,,2949521,2636465,4216034,2571272,1,ERX1037963,ERS789888,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00019,0.00361,0.00018,0.00288,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23583,ERR960915,ERX1037962,ERS789887,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482483,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482483|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 6 sc 2203961|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGGAACTACAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 6 sc 2203961|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#6,12738273,Illumina sequencing of library 12738273  constructed from sample accession ERS789887 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGGAACTACAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#6.cram,cram,33180993.0,257217.0,SC RUN 15298 1#6,0:54 1:75,A:8481490;C:6072343;G:11085635;T:7541524;N:1,54,75,,,8481490,6072343,11085635,7541524,1,ERX1037962,ERS789887,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,8e-05,0.00423,5e-05,0.00422,0.99995,1.0,0.5,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23584,ERR960914,ERX1037961,ERS789886,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482482,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:43Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482482|INSDC center name:SC|INSDC first public:2015 07 13T15:15:43Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 5 sc 2203960|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GAGTCGCGACG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 5 sc 2203960|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#5,12738272,Illumina sequencing of library 12738272  constructed from sample accession ERS789886 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GAGTCGCGACG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#5.cram,cram,4597302.0,35638.0,SC RUN 15298 1#5,0:54 1:75,A:1143776;C:1020979;G:1487209;T:945338;N:0,54,75,,,1143776,1020979,1487209,945338,0,ERX1037961,ERS789886,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23585,ERR960913,ERX1037960,ERS789885,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482481,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:53:18Z|External Id:SAMEA3482481|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:53:18Z|INSDC status:public|Submitter Id:crest 1st 96 4 sc 2203959|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CAGGTGACGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 4 sc 2203959|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#4,12738271,Illumina sequencing of library 12738271  constructed from sample accession ERS789885 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CAGGTGACGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#4.cram,cram,37264875.0,288875.0,SC RUN 15298 1#4,0:54 1:75,A:9589177;C:8131578;G:11983517;T:7560602;N:1,54,75,,,9589177,8131578,11983517,7560602,1,ERX1037960,ERS789885,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,8e-05,0.00279,7e-05,0.00278,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23586,ERR960912,ERX1037959,ERS789884,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482480,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482480|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 3 sc 2203958|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AACCACAGCAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 3 sc 2203958|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#3,12738270,Illumina sequencing of library 12738270  constructed from sample accession ERS789884 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AACCACAGCAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#3.cram,cram,32730912.0,253728.0,SC RUN 15298 1#3,0:54 1:75,A:8396078;C:6363868;G:10313115;T:7657833;N:18,54,75,,,8396078,6363868,10313115,7657833,18,ERX1037959,ERS789884,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00068,0.06344,0.00067,0.05099,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23587,ERR960911,ERX1037958,ERS789883,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482479,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482479|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 2 sc 2203957|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GACAAAGAGAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 2 sc 2203957|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#2,12738269,Illumina sequencing of library 12738269  constructed from sample accession ERS789883 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GACAAAGAGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#2.cram,cram,434085.0,3365.0,SC RUN 15298 1#2,0:54 1:75,A:102896;C:91472;G:130311;T:109406;N:0,54,75,,,102896,91472,130311,109406,0,ERX1037958,ERS789883,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
23588,ERR960910,ERX1037957,ERS789882,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482478,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:44Z|ENA LAST UPDATE:2018 03 09T02:05:52Z|External Id:SAMEA3482478|INSDC center name:SC|INSDC first public:2015 07 13T15:15:44Z|INSDC last update:2018 03 09T02:05:52Z|INSDC status:public|Submitter Id:crest 1st 96 1 sc 2203956|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CCCTATGGCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 1 sc 2203956|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#1,12738268,Illumina sequencing of library 12738268  constructed from sample accession ERS789882 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CCCTATGGCCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#1.cram,cram,322371.0,2499.0,SC RUN 15298 1#1,0:54 1:75,A:85304;C:56046;G:114417;T:66604;N:0,54,75,,,85304,56046,114417,66604,0,ERX1037957,ERS789882,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24174,ERR960968,ERX1038015,ERS789940,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482536,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482536|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 59 sc 2204014|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CACAGGTCAAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 59 sc 2204014|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#59,12738326,Illumina sequencing of library 12738326  constructed from sample accession ERS789940 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CACAGGTCAAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#59.cram,cram,23121831.0,179239.0,SC RUN 15298 1#59,0:54 1:75,A:6154571;C:4112286;G:7542575;T:5312399;N:0,54,75,,,6154571,4112286,7542575,5312399,0,ERX1038015,ERS789940,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00011,0.02964,0.0001,0.02676,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24175,ERR960967,ERX1038014,ERS789939,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482535,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:19:10Z|External Id:SAMEA3482535|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:19:10Z|INSDC status:public|Submitter Id:crest 1st 96 58 sc 2204013|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTGGACGACCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 58 sc 2204013|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#58,12738325,Illumina sequencing of library 12738325  constructed from sample accession ERS789939 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TTGGACGACCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#58.cram,cram,5189670.0,40230.0,SC RUN 15298 1#58,0:54 1:75,A:1374701;C:1068384;G:1688459;T:1058126;N:0,54,75,,,1374701,1068384,1688459,1058126,0,ERX1038014,ERS789939,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,3e-05,0.02516,2e-05,0.0,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24176,ERR960966,ERX1038013,ERS789938,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482534,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482534|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 57 sc 2204012|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CCCCTTCGCAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 57 sc 2204012|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#57,12738324,Illumina sequencing of library 12738324  constructed from sample accession ERS789938 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CCCCTTCGCAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#57.cram,cram,979368.0,7592.0,SC RUN 15298 1#57,0:54 1:75,A:249466;C:209561;G:319719;T:200622;N:0,54,75,,,249466,209561,319719,200622,0,ERX1038013,ERS789938,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.0,0.0,0.0,0.0,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24177,ERR960965,ERX1038012,ERS789937,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482533,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:54:36Z|External Id:SAMEA3482533|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:54:36Z|INSDC status:public|Submitter Id:crest 1st 96 56 sc 2204011|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGAGCGGCAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 56 sc 2204011|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#56,12738323,Illumina sequencing of library 12738323  constructed from sample accession ERS789937 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence GTGAGCGGCAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#56.cram,cram,5066475.0,39275.0,SC RUN 15298 1#56,0:54 1:75,A:1261749;C:1102205;G:1624737;T:1077784;N:0,54,75,,,1261749,1102205,1624737,1077784,0,ERX1038012,ERS789937,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00019,0.07143,0.00018,0.01587,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24178,ERR960964,ERX1038011,ERS789936,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482532,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:16:54Z|External Id:SAMEA3482532|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:16:54Z|INSDC status:public|Submitter Id:crest 1st 96 55 sc 2204010|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence CGCGCAAACAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 55 sc 2204010|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#55,12738322,Illumina sequencing of library 12738322  constructed from sample accession ERS789936 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence CGCGCAAACAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#55.cram,cram,2016786.0,15634.0,SC RUN 15298 1#55,0:54 1:75,A:509494;C:410773;G:642957;T:453562;N:0,54,75,,,509494,410773,642957,453562,0,ERX1038011,ERS789936,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,8e-05,0.01299,7e-05,0.01298,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24179,ERR960963,ERX1038010,ERS789935,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482531,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482531|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 54 sc 2204009|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACTAACCCAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 54 sc 2204009|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#54,12738321,Illumina sequencing of library 12738321  constructed from sample accession ERS789935 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence TACTAACCCAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#54.cram,cram,29017905.0,224945.0,SC RUN 15298 1#54,0:54 1:75,A:8105836;C:4293095;G:10345302;T:6273672;N:0,54,75,,,8105836,4293095,10345302,6273672,0,ERX1038010,ERS789935,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00016,0.01571,0.00015,0.00981,1.0,0.99991,,0.44444,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24180,ERR960962,ERX1038009,ERS789934,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482530,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:41Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482530|INSDC center name:SC|INSDC first public:2015 07 13T15:15:41Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 53 sc 2204008|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AACCTTGAGGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 53 sc 2204008|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#53,12738320,Illumina sequencing of library 12738320  constructed from sample accession ERS789934 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AACCTTGAGGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#53.cram,cram,17456667.0,135323.0,SC RUN 15298 1#53,0:54 1:75,A:4566322;C:3655656;G:5535047;T:3699642;N:0,54,75,,,4566322,3655656,5535047,3699642,0,ERX1038009,ERS789934,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,5e-05,0.00816,4e-05,0.00271,1.0,0.99997,,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24181,ERR960961,ERX1038008,ERS789933,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482529,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:45Z|ENA LAST UPDATE:2018 03 09T02:19:09Z|External Id:SAMEA3482529|INSDC center name:SC|INSDC first public:2015 07 13T15:15:45Z|INSDC last update:2018 03 09T02:19:09Z|INSDC status:public|Submitter Id:crest 1st 96 52 sc 2204007|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGCAGGGACGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 52 sc 2204007|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#52,12738319,Illumina sequencing of library 12738319  constructed from sample accession ERS789933 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence AGCAGGGACGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#52.cram,cram,12276801.0,95169.0,SC RUN 15298 1#52,0:54 1:75,A:3069089;C:2664981;G:3953559;T:2589172;N:0,54,75,,,3069089,2664981,3953559,2589172,0,ERX1038008,ERS789933,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,9e-05,0.00598,8e-05,0.00597,1.0,1.0,,,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise
24182,ERR960960,ERX1038007,ERS789932,ERP011007,PRJEB9859,Transcriptome profiling of single zebrafish cells,Transcriptome_profiling_of_single_zebrafish_cells-sc-2991,Transcriptome Analysis,Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study  the transcriptome of single cells.,,,,,SAMEA3482528,SC,age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:07:48Z|External Id:SAMEA3482528|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:07:48Z|INSDC status:public|Submitter Id:crest 1st 96 51 sc 2204006|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence ACAGGGGCAAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 51 sc 2204006|scientific name:Danio rerio|strain:H/LF,,,,,,,,,Illumina MiSeq paired end sequencing,SC EXP 15298 1#51,12738318,Illumina sequencing of library 12738318  constructed from sample accession ERS789932 for study accession ERP011007.  This is part of an Illumina multiplexed sequencing run 15298 1.  This submission includes reads tagged with the sequence ACAGGGGCAAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina MiSeq,,ERP011007,Illumina MiSeq paired end sequencing,ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16,15298_1#51.cram,cram,9057735.0,70215.0,SC RUN 15298 1#51,0:54 1:75,A:2194761;C:1924623;G:2948434;T:1989917;N:0,54,75,,,2194761,1924623,2948434,1989917,0,ERX1038007,ERS789932,ERA457908,The Wellcome Trust Sanger Institute|European Nucleotide Archive,Wellcome Sanger Institute,2,0.00037,0.04356,0.00022,0.02613,0.99997,0.99997,1.0,0.0,54,75,T,T,mates < 9% mapping rate,illumina,miseq,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-07-13,Hatching,Embryo,Undetermined,Embryo Imprecise