rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
88,DRR032736,DRX029542,DRS049941,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr zfs:0000015 2,SAMD00028133,,sample name:Dr zfs:0000015 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:zfs:0000015|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028133,DRX029542,Dr zfs:0000015 2,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028133,,,,3129028500.0,31290285.0,DRR032736,0:100 1:0,A:849515903;C:721550282;G:717777586;T:840154982;N:29747,100,0,,,849515903,721550282,717777586,840154982,29747,DRX029542,DRS049941,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92724,,0.07971,,0.74657,,0.47796,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Blastula,Embryo,Whole Organism,All anatomical structures
89,DRR032735,DRX029541,DRS049940,DRP003810,PRJDB3785,EXPANDE project,DRP003810,Other,EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief  taking advantages of Illumina sequencing  RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.,,,mRNA extracted from pooled embryos of 100 individuals,Dr zfs:0000015 1,SAMD00028132,,sample name:Dr zfs:0000015 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:zfs:0000015|genotype:wild type|phenotype:wild type|sex:male  female  and mixed,,,,,,,,,Illumina HiSeq 2000 sequencing of SAMD00028132,DRX029541,Dr zfs:0000015 1,1,Total RNA QIAGEN RNeasy followed by TruSeq,,RNA-Seq,TRANSCRIPTOMIC,other,SINGLE,ILLUMINA,Illumina HiSeq 2000,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP003810,Illumina HiSeq 2000 sequencing of SAMD00028132,,,,4310219700.0,43102197.0,DRR032735,0:100 1:0,A:1169701983;C:993241399;G:986263558;T:1160969083;N:43677,100,0,,,1169701983,993241399,986263558,1160969083,43677,DRX029541,DRS049940,DRA003460,"UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo","UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo",1,0.92609,,0.07773,,0.74349,,0.47849,,100,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Japan,2017-09-20,Blastula,Embryo,Whole Organism,All anatomical structures
3131,ERR1431998,ERX1502376,ERS1021885,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool12,SAMEA3714736,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714736|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:50Z|INSDC status:public|Submitter Id:36c8f820 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCAGCTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36c8f820 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#24,15566039,Illumina sequencing of library 15566039  constructed from sample accession ERS1021885 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TTCAGCTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#24.cram,cram,815977370.0,6276749.0,SC RUN 18913 3#24,0:55 1:75,A:213567118;C:118126736;G:117673886;T:366512202;N:97428,55,75,,,213567118,118126736,117673886,366512202,97428,ERX1502376,ERS1021885,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.48701,0.67574,0.4483,0.14299,0.98127,0.83818,0.77734,0.58737,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3132,ERR1431997,ERX1502375,ERS1021884,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool11,SAMEA3714735,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714735|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:49Z|INSDC status:public|Submitter Id:36c1f340 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACTAGTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36c1f340 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#23,15566038,Illumina sequencing of library 15566038  constructed from sample accession ERS1021884 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TACTAGTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#23.cram,cram,1112130630.0,8554851.0,SC RUN 18913 3#23,0:55 1:75,A:302953719;C:145651421;G:141893144;T:521502913;N:129433,55,75,,,302953719,145651421,141893144,521502913,129433,ERX1502375,ERS1021884,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.54907,0.68876,0.5201,0.14968,0.98285,0.84441,0.7752,0.58095,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3133,ERR1431996,ERX1502374,ERS1021883,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool10,SAMEA3714734,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714734|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:49Z|INSDC status:public|Submitter Id:36baee60 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCAGATTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36baee60 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#22,15566037,Illumina sequencing of library 15566037  constructed from sample accession ERS1021883 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCAGATTC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#22.cram,cram,1191503040.0,9165408.0,SC RUN 18913 3#22,0:55 1:75,A:321221880;C:163147135;G:159872871;T:547123024;N:138130,55,75,,,321221880,163147135,159872871,547123024,138130,ERX1502374,ERS1021883,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.52132,0.67747,0.49175,0.14498,0.98395,0.84086,0.74826,0.59817,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3134,ERR1431995,ERX1502373,ERS1021882,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool9,SAMEA3714733,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714733|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:48Z|INSDC status:public|Submitter Id:36b437a0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TATGCCAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36b437a0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#21,15566036,Illumina sequencing of library 15566036  constructed from sample accession ERS1021882 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TATGCCAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#21.cram,cram,1089970570.0,8384389.0,SC RUN 18913 3#21,0:55 1:75,A:295587948;C:144795941;G:139926137;T:509533958;N:126586,55,75,,,295587948,144795941,139926137,509533958,126586,ERX1502373,ERS1021882,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.54548,0.68161,0.52092,0.15053,0.98382,0.84287,0.73212,0.57722,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3135,ERR1431994,ERX1502372,ERS1021881,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool8,SAMEA3714732,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714732|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:48Z|INSDC status:public|Submitter Id:36ad59d0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGGCTCAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36ad59d0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#20,15566035,Illumina sequencing of library 15566035  constructed from sample accession ERS1021881 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TGGCTCAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#20.cram,cram,1149171660.0,8839782.0,SC RUN 18913 3#20,0:55 1:75,A:304778046;C:160987572;G:156056774;T:527219195;N:130073,55,75,,,304778046,160987572,156056774,527219195,130073,ERX1502372,ERS1021881,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.52762,0.66993,0.48986,0.13399,0.98159,0.84319,0.7782,0.59307,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3136,ERR1431993,ERX1502371,ERS1021880,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool7,SAMEA3714731,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714731|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:47Z|INSDC status:public|Submitter Id:36a67c00 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCATTGAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36a67c00 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#19,15566034,Illumina sequencing of library 15566034  constructed from sample accession ERS1021880 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCATTGAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#19.cram,cram,974571520.0,7496704.0,SC RUN 18913 3#19,0:55 1:75,A:258616693;C:139664343;G:134873486;T:441304796;N:112202,55,75,,,258616693,139664343,134873486,441304796,112202,ERX1502371,ERS1021880,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.51866,0.6617,0.48255,0.13943,0.97979,0.83599,0.71098,0.56832,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3137,ERR1431992,ERX1502370,ERS1021879,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool6,SAMEA3714730,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714730|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:47Z|INSDC status:public|Submitter Id:369f7720 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTATGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:369f7720 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#18,15566033,Illumina sequencing of library 15566033  constructed from sample accession ERS1021879 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TGTATGCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#18.cram,cram,1355496090.0,10426893.0,SC RUN 18913 3#18,0:55 1:75,A:362010050;C:197408679;G:187864917;T:608057592;N:154852,55,75,,,362010050,197408679,187864917,608057592,154852,ERX1502370,ERS1021879,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.50813,0.6478,0.46841,0.13592,0.97897,0.83954,0.71875,0.57792,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3138,ERR1431991,ERX1502369,ERS1021878,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool5,SAMEA3714729,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714729|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:47Z|INSDC status:public|Submitter Id:36987240 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCAGTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36987240 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#17,15566032,Illumina sequencing of library 15566032  constructed from sample accession ERS1021878 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCCAGTCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#17.cram,cram,1261956150.0,9707355.0,SC RUN 18913 3#17,0:55 1:75,A:335406671;C:179605372;G:175802662;T:571004359;N:137086,55,75,,,335406671,179605372,175802662,571004359,137086,ERX1502369,ERS1021878,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.52834,0.66669,0.49097,0.1415,0.97962,0.83778,0.73495,0.58472,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3139,ERR1431990,ERX1502368,ERS1021877,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool4,SAMEA3714728,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714728|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:46Z|INSDC status:public|Submitter Id:36916d60 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAAGTTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36916d60 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#16,15566031,Illumina sequencing of library 15566031  constructed from sample accession ERS1021877 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TAAGTTCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#16.cram,cram,1086894640.0,8360728.0,SC RUN 18913 3#16,0:55 1:75,A:288253273;C:155546918;G:150778630;T:492191292;N:124527,55,75,,,288253273,155546918,150778630,492191292,124527,ERX1502368,ERS1021877,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.4901,0.66656,0.44994,0.12915,0.98019,0.83826,0.77107,0.5953,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3140,ERR1431989,ERX1502367,ERS1021876,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool3,SAMEA3714727,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714727|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:46Z|INSDC status:public|Submitter Id:368a8f90 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCAGGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:368a8f90 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#15,15566030,Illumina sequencing of library 15566030  constructed from sample accession ERS1021876 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCAGGAGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#15.cram,cram,1085273800.0,8348260.0,SC RUN 18913 3#15,0:55 1:75,A:293743750;C:151268139;G:140854688;T:499282190;N:125033,55,75,,,293743750,151268139,140854688,499282190,125033,ERX1502367,ERS1021876,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.53125,0.67377,0.50259,0.15611,0.98173,0.84039,0.70278,0.55161,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3141,ERR1431988,ERX1502366,ERS1021875,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool2,SAMEA3714726,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714726|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:45Z|INSDC status:public|Submitter Id:3683d8d0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCACGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:3683d8d0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#14,15566029,Illumina sequencing of library 15566029  constructed from sample accession ERS1021875 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCTCACGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#14.cram,cram,1116039210.0,8584917.0,SC RUN 18913 3#14,0:55 1:75,A:301908224;C:152777185;G:147591858;T:513633971;N:127972,55,75,,,301908224,152777185,147591858,513633971,127972,ERX1502366,ERS1021875,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.5503,0.68419,0.52606,0.1732,0.98315,0.84384,0.70011,0.58156,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3142,ERR1431987,ERX1502365,ERS1021874,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 pool1,SAMEA3714725,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714725|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:44Z|INSDC status:public|Submitter Id:367cace0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACTTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:367cace0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#13,15566028,Illumina sequencing of library 15566028  constructed from sample accession ERS1021874 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TACTTCGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#13.cram,cram,1456725140.0,11205578.0,SC RUN 18913 3#13,0:55 1:75,A:380976729;C:210152336;G:207272641;T:658157690;N:165744,55,75,,,380976729,210152336,207272641,658157690,165744,ERX1502365,ERS1021874,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.49705,0.69108,0.46278,0.13868,0.98017,0.83463,0.71428,0.58099,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3143,ERR1431986,ERX1502364,ERS1021873,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 12,SAMEA3714724,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714724|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:44Z|INSDC status:public|Submitter Id:36735e10 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGAACTGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36735e10 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#12,15566027,Illumina sequencing of library 15566027  constructed from sample accession ERS1021873 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TGAACTGG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#12.cram,cram,831376780.0,6395206.0,SC RUN 18913 3#12,0:55 1:75,A:216582006;C:122213403;G:117906291;T:374580018;N:95062,55,75,,,216582006,122213403,117906291,374580018,95062,ERX1502364,ERS1021873,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.45973,0.67083,0.42784,0.12157,0.98236,0.83788,0.6899,0.58437,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3144,ERR1431985,ERX1502363,ERS1021872,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 11,SAMEA3714723,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714723|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:43Z|INSDC status:public|Submitter Id:366d4390 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGGTATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:366d4390 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#11,15566026,Illumina sequencing of library 15566026  constructed from sample accession ERS1021872 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TTGGTATG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#11.cram,cram,982385820.0,7556814.0,SC RUN 18913 3#11,,,,,,,,,,,,ERX1502363,ERS1021872,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26633,0.44441,0.24619,0.0766,0.97488,0.82185,0.5096,0.50565,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3145,ERR1431984,ERX1502362,ERS1021871,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 10,SAMEA3714722,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714722|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:42Z|INSDC status:public|Submitter Id:365dda40 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAACGCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:365dda40 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#10,15566025,Illumina sequencing of library 15566025  constructed from sample accession ERS1021871 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TAACGCTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#10.cram,cram,1129258910.0,8686607.0,SC RUN 18913 3#10,0:55 1:75,A:301644873;C:163160395;G:158609930;T:505718026;N:125686,55,75,,,301644873,163160395,158609930,505718026,125686,ERX1502362,ERS1021871,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.48342,0.65837,0.44588,0.14074,0.97966,0.84129,0.74469,0.58765,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3146,ERR1431983,ERX1502361,ERS1021870,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 9,SAMEA3714721,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714721|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:42Z|INSDC status:public|Submitter Id:36546460 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGAAGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36546460 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#9,15566024,Illumina sequencing of library 15566024  constructed from sample accession ERS1021870 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCGAAGTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#9.cram,cram,842296780.0,6479206.0,SC RUN 18913 3#9,0:55 1:75,A:221181601;C:124222230;G:119675624;T:377122414;N:94911,55,75,,,221181601,124222230,119675624,377122414,94911,ERX1502361,ERS1021870,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.48514,0.67392,0.43894,0.13825,0.97774,0.83747,0.73594,0.57844,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3147,ERR1431982,ERX1502360,ERS1021869,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 8,SAMEA3714720,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714720|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:41Z|INSDC status:public|Submitter Id:364f5b50 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCCATTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:364f5b50 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#8,15566023,Illumina sequencing of library 15566023  constructed from sample accession ERS1021869 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TTCCATTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#8.cram,cram,1696764030.0,13052031.0,SC RUN 18913 3#8,0:55 1:75,A:448590995;C:248705078;G:241365069;T:757908817;N:194071,55,75,,,448590995,248705078,241365069,757908817,194071,ERX1502360,ERS1021869,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.48761,0.67878,0.45745,0.14057,0.98068,0.84289,0.34968,0.58503,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3148,ERR1431981,ERX1502359,ERS1021868,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 7,SAMEA3714719,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714719|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:41Z|INSDC status:public|Submitter Id:364a2b30 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGTCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:364a2b30 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#7,15566022,Illumina sequencing of library 15566022  constructed from sample accession ERS1021868 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TAGTCTTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#7.cram,cram,1636224720.0,12586344.0,SC RUN 18913 3#7,0:55 1:75,A:440825191;C:228551875;G:220027913;T:746634386;N:185355,55,75,,,440825191,228551875,220027913,746634386,185355,ERX1502359,ERS1021868,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.46379,0.69316,0.4377,0.15391,0.98261,0.8407,0.70581,0.56315,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3149,ERR1431980,ERX1502358,ERS1021867,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 6,SAMEA3714718,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714718|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:40Z|INSDC status:public|Submitter Id:36452220 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTGGTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36452220 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#6,15566021,Illumina sequencing of library 15566021  constructed from sample accession ERS1021867 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TGTGGTTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#6.cram,cram,1315887560.0,10122212.0,SC RUN 18913 3#6,0:55 1:75,A:350934798;C:190554143;G:178806140;T:595442820;N:149659,55,75,,,350934798,190554143,178806140,595442820,149659,ERX1502358,ERS1021867,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.45393,0.673,0.42695,0.13954,0.97966,0.83974,0.66235,0.56212,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3150,ERR1431979,ERX1502357,ERS1021866,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 5,SAMEA3714717,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714717|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:40Z|INSDC status:public|Submitter Id:36404020 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCTCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36404020 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#5,15566020,Illumina sequencing of library 15566020  constructed from sample accession ERS1021866 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TCCTCAAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#5.cram,cram,1403541750.0,10796475.0,SC RUN 18913 3#5,0:55 1:75,A:385287558;C:188828869;G:185293899;T:643975368;N:156056,55,75,,,385287558,188828869,185293899,643975368,156056,ERX1502357,ERS1021866,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.53464,0.67505,0.50816,0.16792,0.98194,0.8463,0.3514,0.58408,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3151,ERR1431978,ERX1502356,ERS1021865,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 4,SAMEA3714716,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714716|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:39Z|INSDC status:public|Submitter Id:363b5e20 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACAGGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:363b5e20 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#4,15566019,Illumina sequencing of library 15566019  constructed from sample accession ERS1021865 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TACAGGAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#4.cram,cram,1006174650.0,7739805.0,SC RUN 18913 3#4,0:55 1:75,A:271184670;C:136790423;G:133250902;T:464836750;N:111905,55,75,,,271184670,136790423,133250902,464836750,111905,ERX1502356,ERS1021865,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.55004,0.68643,0.5125,0.14191,0.98417,0.84321,0.78014,0.59722,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3152,ERR1431977,ERX1502355,ERS1021864,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 3,SAMEA3714715,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714715|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:39Z|INSDC status:public|Submitter Id:36362e00 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGTGACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36362e00 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#3,15566018,Illumina sequencing of library 15566018  constructed from sample accession ERS1021864 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TAGTGACT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#3.cram,cram,1111578520.0,8550604.0,SC RUN 18913 3#3,0:55 1:75,A:297278952;C:158713861;G:155652941;T:499805763;N:127003,55,75,,,297278952,158713861,155652941,499805763,127003,ERX1502355,ERS1021864,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.49997,0.68267,0.46045,0.14495,0.98086,0.83976,0.77511,0.60087,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3153,ERR1431976,ERX1502354,ERS1021863,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 2,SAMEA3714714,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714714|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:39Z|INSDC status:public|Submitter Id:36314c00 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCCTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:36314c00 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#2,15566017,Illumina sequencing of library 15566017  constructed from sample accession ERS1021863 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TTCCTGCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#2.cram,cram,1006934240.0,7745648.0,SC RUN 18913 3#2,0:55 1:75,A:267035624;C:147762350;G:156033450;T:435988613;N:114203,55,75,,,267035624,147762350,156033450,435988613,114203,ERX1502354,ERS1021863,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.49352,0.67572,0.43148,0.10196,0.98029,0.84291,0.81781,0.65105,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3154,ERR1431975,ERX1502353,ERS1021862,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 131 1 1,SAMEA3714713,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 01|ENA last update:2015 12 16|External Id:SAMEA3714713|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 01T09:22:13Z|INSDC last update:2015 12 16T13:42:38Z|INSDC status:public|Submitter Id:362ba6b0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 131 clutch 1  collected at blastula   1k cell stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCGATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:362ba6b0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18913 3#1,15566016,Illumina sequencing of library 15566016  constructed from sample accession ERS1021862 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18913 3.  This submission includes reads tagged with the sequence TGCGATCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 06 01|ENA LAST UPDATE:2018 11 16,18913_3#1.cram,cram,1211789410.0,9321457.0,SC RUN 18913 3#1,0:55 1:75,A:319700354;C:171653663;G:171482641;T:548816824;N:135928,55,75,,,319700354,171653663,171482641,548816824,135928,ERX1502353,ERS1021862,ERA640034,European Nucleotide Archive,Wellcome Sanger Institute,2,0.53832,0.6874,0.48654,0.12302,0.98092,0.83516,0.81003,0.42175,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3179,ERR1410201,ERX1481440,ERS1021789,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool12,SAMEA3714640,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714640|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:57Z|INSDC status:public|Submitter Id:3031fc80 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGACTCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:3031fc80 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#24,15565943,Illumina sequencing of library 15565943  constructed from sample accession ERS1021789 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TTGACTCT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#24.cram,cram,1216948590.0,9361143.0,SC RUN 18730 3#24,0:55 1:75,A:333171672;C:183343350;G:173367996;T:526915364;N:150208,55,75,,,333171672,183343350,173367996,526915364,150208,ERX1481440,ERS1021789,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.48926,0.6285,0.44511,0.18765,0.98322,0.89921,0.76026,0.6474,55,75,B,B,biological fallback assumption,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3180,ERR1410200,ERX1481439,ERS1021788,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool11,SAMEA3714639,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714639|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:57Z|INSDC status:public|Submitter Id:302cf370 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCATAGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:302cf370 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#23,15565942,Illumina sequencing of library 15565942  constructed from sample accession ERS1021788 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TGCATAGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#23.cram,cram,2182189620.0,16786074.0,SC RUN 18730 3#23,0:55 1:75,A:566499054;C:349092132;G:327639274;T:938686033;N:273127,55,75,,,566499054,349092132,327639274,938686033,273127,ERX1481439,ERS1021788,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.43211,0.64751,0.37634,0.1767,0.97524,0.88801,0.73246,0.60972,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3181,ERR1410199,ERX1481438,ERS1021787,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool10,SAMEA3714638,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714638|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:56Z|INSDC status:public|Submitter Id:3027c350 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGATACGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:3027c350 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#22,15565941,Illumina sequencing of library 15565941  constructed from sample accession ERS1021787 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TGATACGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#22.cram,cram,2202681130.0,16943701.0,SC RUN 18730 3#22,0:55 1:75,A:576941813;C:353447520;G:330812404;T:941204158;N:275235,55,75,,,576941813,353447520,330812404,941204158,275235,ERX1481438,ERS1021787,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.42089,0.66063,0.36828,0.18938,0.9763,0.8859,0.70367,0.61024,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3182,ERR1410198,ERX1481437,ERS1021786,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool9,SAMEA3714637,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714637|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:56Z|INSDC status:public|Submitter Id:30229330 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGAGCGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:30229330 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#21,15565940,Illumina sequencing of library 15565940  constructed from sample accession ERS1021786 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TCGAGCGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#21.cram,cram,1753866920.0,13491284.0,SC RUN 18730 3#21,0:55 1:75,A:465177842;C:282019874;G:259016051;T:747435901;N:217252,55,75,,,465177842,282019874,259016051,747435901,217252,ERX1481437,ERS1021786,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.41136,0.66031,0.36462,0.18844,0.98015,0.88814,0.73405,0.6056,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3183,ERR1410197,ERX1481436,ERS1021785,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool8,SAMEA3714636,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714636|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:55Z|INSDC status:public|Submitter Id:301db130 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGGAGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:301db130 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#20,15565939,Illumina sequencing of library 15565939  constructed from sample accession ERS1021785 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TTGGAGGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#20.cram,cram,1061630440.0,8166388.0,SC RUN 18730 3#20,0:55 1:75,A:274860827;C:175203334;G:160574972;T:450862229;N:129078,55,75,,,274860827,175203334,160574972,450862229,129078,ERX1481436,ERS1021785,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.41734,0.63528,0.34959,0.17256,0.97638,0.89832,0.79622,0.65038,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3184,ERR1410196,ERX1481435,ERS1021784,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool7,SAMEA3714635,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714635|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:55Z|INSDC status:public|Submitter Id:3018cf30 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTGCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:3018cf30 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#19,15565938,Illumina sequencing of library 15565938  constructed from sample accession ERS1021784 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TCTGCTGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#19.cram,cram,2361667100.0,18166670.0,SC RUN 18730 3#19,0:55 1:75,A:605452054;C:387824270;G:367097307;T:1000992288;N:301181,55,75,,,605452054,387824270,367097307,1000992288,301181,ERX1481435,ERS1021784,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.42928,0.64637,0.34783,0.16296,0.97626,0.8925,0.81501,0.64289,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3185,ERR1410195,ERX1481434,ERS1021783,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool6,SAMEA3714634,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714634|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:54Z|INSDC status:public|Submitter Id:3013c620 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCTGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:3013c620 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#18,15565937,Illumina sequencing of library 15565937  constructed from sample accession ERS1021783 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TTCTGTGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#18.cram,cram,1875589560.0,14427612.0,SC RUN 18730 3#18,0:55 1:75,A:485714676;C:310017253;G:291983146;T:787634532;N:239953,55,75,,,485714676,310017253,291983146,787634532,239953,ERX1481434,ERS1021783,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.43077,0.65173,0.37055,0.18881,0.97388,0.88978,0.69826,0.61563,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3186,ERR1410194,ERX1481433,ERS1021782,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool5,SAMEA3714633,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714633|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:54Z|INSDC status:public|Submitter Id:300ee420 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTACCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:300ee420 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#17,15565936,Illumina sequencing of library 15565936  constructed from sample accession ERS1021782 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TGTACCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#17.cram,cram,2253562870.0,17335099.0,SC RUN 18730 3#17,0:55 1:75,A:604354868;C:351558138;G:337816454;T:959549697;N:283713,55,75,,,604354868,351558138,337816454,959549697,283713,ERX1481433,ERS1021782,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.42281,0.64416,0.37058,0.17712,0.97973,0.89031,0.77311,0.6294,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3187,ERR1410193,ERX1481432,ERS1021781,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool4,SAMEA3714632,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714632|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:53Z|INSDC status:public|Submitter Id:3009b400 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCGTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:3009b400 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#16,15565935,Illumina sequencing of library 15565935  constructed from sample accession ERS1021781 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TCCGTCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#16.cram,cram,2325672830.0,17889791.0,SC RUN 18730 3#16,0:55 1:75,A:605354485;C:377756806;G:365369994;T:976904138;N:287407,55,75,,,605354485,377756806,365369994,976904138,287407,ERX1481432,ERS1021781,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.42778,0.65492,0.36554,0.17876,0.97583,0.89503,0.75409,0.62574,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3188,ERR1410192,ERX1481431,ERS1021780,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool3,SAMEA3714631,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714631|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:53Z|INSDC status:public|Submitter Id:300483e0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAAGCGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:300483e0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#15,15565934,Illumina sequencing of library 15565934  constructed from sample accession ERS1021780 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TAAGCGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#15.cram,cram,1696430190.0,13049463.0,SC RUN 18730 3#15,0:55 1:75,A:445798801;C:270167387;G:252106926;T:728146286;N:210790,55,75,,,445798801,270167387,252106926,728146286,210790,ERX1481431,ERS1021780,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.43293,0.67145,0.38057,0.19288,0.97654,0.88767,0.7043,0.60309,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3189,ERR1410191,ERX1481430,ERS1021779,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool2,SAMEA3714630,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714630|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:53Z|INSDC status:public|Submitter Id:2fff2cb0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCGGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fff2cb0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#14,15565933,Illumina sequencing of library 15565933  constructed from sample accession ERS1021779 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TCTCGGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#14.cram,cram,2116109450.0,16277765.0,SC RUN 18730 3#14,0:55 1:75,A:547848931;C:359914541;G:343904559;T:864176634;N:264785,55,75,,,547848931,359914541,343904559,864176634,264785,ERX1481430,ERS1021779,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.47595,0.64411,0.39707,0.18517,0.97865,0.89359,0.75606,0.65601,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3190,ERR1410190,ERX1481429,ERS1021778,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 pool1,SAMEA3714629,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714629|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:52Z|INSDC status:public|Submitter Id:2ff393f0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGGTTGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2ff393f0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#13,15565932,Illumina sequencing of library 15565932  constructed from sample accession ERS1021778 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TGGTTGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#13.cram,cram,1552039320.0,11938764.0,SC RUN 18730 3#13,0:55 1:75,A:408971844;C:240263044;G:223389962;T:679225172;N:189298,55,75,,,408971844,240263044,223389962,679225172,189298,ERX1481429,ERS1021778,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.46381,0.68282,0.41458,0.17023,0.97613,0.88783,0.75182,0.6134,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3191,ERR1410189,ERX1481428,ERS1021777,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 12,SAMEA3714628,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714628|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:51Z|INSDC status:public|Submitter Id:2fe7fb30 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CTTGTACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fe7fb30 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#12,15565931,Illumina sequencing of library 15565931  constructed from sample accession ERS1021777 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence CTTGTACT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#12.cram,cram,1389058580.0,10685066.0,SC RUN 18730 3#12,0:55 1:75,A:369786628;C:212555574;G:202001592;T:604541983;N:172803,55,75,,,369786628,212555574,202001592,604541983,172803,ERX1481428,ERS1021777,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.45537,0.65343,0.40581,0.19689,0.97861,0.89761,0.76177,0.59971,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3192,ERR1410188,ERX1481427,ERS1021776,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 11,SAMEA3714627,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714627|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:51Z|INSDC status:public|Submitter Id:2fe03300 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGCTACAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fe03300 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#11,15565930,Illumina sequencing of library 15565930  constructed from sample accession ERS1021776 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence GGCTACAG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#11.cram,cram,1256669700.0,9666690.0,SC RUN 18730 3#11,0:55 1:75,A:317060027;C:207483804;G:196791770;T:535178259;N:155840,55,75,,,317060027,207483804,196791770,535178259,155840,ERX1481427,ERS1021776,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.42184,0.672,0.3658,0.1743,0.97686,0.88779,0.71153,0.60758,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3193,ERR1410187,ERX1481426,ERS1021775,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 10,SAMEA3714626,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714626|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:50Z|INSDC status:public|Submitter Id:2fdb5100 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGCTTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fdb5100 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#10,15565929,Illumina sequencing of library 15565929  constructed from sample accession ERS1021775 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TAGCTTGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#10.cram,cram,1083927520.0,8337904.0,SC RUN 18730 3#10,0:55 1:75,A:270010533;C:182736454;G:173673293;T:457378873;N:128367,55,75,,,270010533,182736454,173673293,457378873,128367,ERX1481426,ERS1021775,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.44498,0.65932,0.3699,0.17646,0.9777,0.89966,0.791,0.65249,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3194,ERR1410186,ERX1481425,ERS1021774,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 9,SAMEA3714625,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714625|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:50Z|INSDC status:public|Submitter Id:2fd55d90 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCAGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fd55d90 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#9,15565928,Illumina sequencing of library 15565928  constructed from sample accession ERS1021774 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence GATCAGCG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#9.cram,cram,1021544550.0,7858035.0,SC RUN 18730 3#9,0:55 1:75,A:257728544;C:170067767;G:158786942;T:434837374;N:123923,55,75,,,257728544,170067767,158786942,434837374,123923,ERX1481425,ERS1021774,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.41162,0.65611,0.34867,0.16529,0.97498,0.88891,0.72913,0.6205,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3195,ERR1410185,ERX1481424,ERS1021773,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 8,SAMEA3714624,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714624|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:49Z|INSDC status:public|Submitter Id:2fcef4f0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACTTGATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fcef4f0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#8,15565927,Illumina sequencing of library 15565927  constructed from sample accession ERS1021773 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence ACTTGATG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#8.cram,cram,439537930.0,3381061.0,SC RUN 18730 3#8,0:55 1:75,A:93810365;C:97441086;G:79816238;T:168413085;N:57156,55,75,,,93810365,97441086,79816238,168413085,57156,ERX1481424,ERS1021773,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.79341,0.67829,0.78976,0.65617,0.99797,0.98792,0.76653,0.5233,55,75,B,T,nofeature rate indicates technical or non-transcriptomic,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3196,ERR1410184,ERX1481423,ERS1021772,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 7,SAMEA3714623,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714623|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:49Z|INSDC status:public|Submitter Id:2fca12f0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CAGATCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fca12f0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#7,15565926,Illumina sequencing of library 15565926  constructed from sample accession ERS1021772 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence CAGATCTG.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#7.cram,cram,1213862650.0,9337405.0,SC RUN 18730 3#7,0:55 1:75,A:321573778;C:193041417;G:181049388;T:518044270;N:153797,55,75,,,321573778,193041417,181049388,518044270,153797,ERX1481423,ERS1021772,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.44098,0.64064,0.37357,0.1747,0.97865,0.89753,0.81159,0.62542,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3197,ERR1410183,ERX1481422,ERS1021771,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 6,SAMEA3714622,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714622|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:48Z|INSDC status:public|Submitter Id:2fc46da0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCCAATGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fc46da0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#6,15565925,Illumina sequencing of library 15565925  constructed from sample accession ERS1021771 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence GCCAATGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#6.cram,cram,1152164390.0,8862803.0,SC RUN 18730 3#6,0:55 1:75,A:302428224;C:183510787;G:169513738;T:496566527;N:145114,55,75,,,302428224,183510787,169513738,496566527,145114,ERX1481422,ERS1021771,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.46985,0.64819,0.40317,0.19403,0.97966,0.89927,0.83049,0.64484,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3198,ERR1410182,ERX1481421,ERS1021770,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 5,SAMEA3714621,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714621|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:48Z|INSDC status:public|Submitter Id:2fb8fbf0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACAGTGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fb8fbf0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#5,15565924,Illumina sequencing of library 15565924  constructed from sample accession ERS1021770 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence ACAGTGGT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#5.cram,cram,1337669840.0,10289768.0,SC RUN 18730 3#5,0:55 1:75,A:347750002;C:215834107;G:197357148;T:576557027;N:171556,55,75,,,347750002,215834107,197357148,576557027,171556,ERX1481421,ERS1021770,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.43285,0.64646,0.38726,0.20288,0.97776,0.89238,0.69595,0.58486,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3199,ERR1410181,ERX1481420,ERS1021769,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 4,SAMEA3714620,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714620|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:47Z|INSDC status:public|Submitter Id:2fad6330 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACCACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fad6330 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#4,15565923,Illumina sequencing of library 15565923  constructed from sample accession ERS1021769 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TGACCACT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#4.cram,cram,1271663510.0,9782027.0,SC RUN 18730 3#4,0:55 1:75,A:338340542;C:196679822;G:183940207;T:552547286;N:155653,55,75,,,338340542,196679822,183940207,552547286,155653,ERX1481420,ERS1021769,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.43512,0.65224,0.3924,0.20859,0.98104,0.8929,0.73912,0.59803,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3200,ERR1410180,ERX1481419,ERS1021768,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 3,SAMEA3714619,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714619|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:46Z|INSDC status:public|Submitter Id:2fa4d7b0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTAGGCAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2fa4d7b0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#3,15565922,Illumina sequencing of library 15565922  constructed from sample accession ERS1021768 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence TTAGGCAT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#3.cram,cram,1321085870.0,10162199.0,SC RUN 18730 3#3,0:55 1:75,A:344536302;C:212703112;G:200397228;T:563282320;N:166908,55,75,,,344536302,212703112,200397228,563282320,166908,ERX1481419,ERS1021768,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.44646,0.6568,0.37553,0.18548,0.97518,0.89118,0.27102,0.61842,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3201,ERR1410179,ERX1481418,ERS1021767,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 2,SAMEA3714618,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714618|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:44Z|INSDC last update:2015 12 16T13:41:46Z|INSDC status:public|Submitter Id:2f9bd700 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CGATGTTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2f9bd700 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#2,15565921,Illumina sequencing of library 15565921  constructed from sample accession ERS1021767 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence CGATGTTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#2.cram,cram,1372323420.0,10556334.0,SC RUN 18730 3#2,0:55 1:75,A:368294975;C:212451596;G:198274942;T:593128199;N:173708,55,75,,,368294975,212451596,198274942,593128199,173708,ERX1481418,ERS1021767,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.45507,0.65722,0.41424,0.21268,0.97968,0.89428,0.7343,0.39735,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3202,ERR1410178,ERX1481417,ERS1021766,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 127 1 1,SAMEA3714617,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 10|ENA last update:2015 12 16|External Id:SAMEA3714617|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 10T14:31:45Z|INSDC last update:2015 12 16T13:41:46Z|INSDC status:public|Submitter Id:2f8edeb0 9ffe 11e5 a85e 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 127 clutch 1  collected at blastula   dome stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ATCACGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:2f8edeb0 9ffe 11e5 a85e 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18730 3#1,15565920,Illumina sequencing of library 15565920  constructed from sample accession ERS1021766 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18730 3.  This submission includes reads tagged with the sequence ATCACGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 10|ENA LAST UPDATE:2018 11 16,18730_3#1.cram,cram,1311808940.0,10090838.0,SC RUN 18730 3#1,0:55 1:75,A:345404820;C:206460580;G:197131457;T:562647283;N:164800,55,75,,,345404820,206460580,197131457,562647283,164800,ERX1481417,ERS1021766,ERA620320,European Nucleotide Archive,Wellcome Sanger Institute,2,0.43811,0.66023,0.39369,0.21155,0.97944,0.897,0.73663,0.60044,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3273,ERR1396961,ERX1468220,ERS1021837,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool12,SAMEA3714688,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714688|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:25Z|INSDC status:public|Submitter Id:028a07c0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GACGGATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:028a07c0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#24,15565991,Illumina sequencing of library 15565991  constructed from sample accession ERS1021837 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence GACGGATT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#24.cram,cram,794398670.0,6110759.0,SC RUN 18715 1#24,0:55 1:75,A:193799725;C:147064858;G:145595245;T:307927531;N:11311,55,75,,,193799725,147064858,145595245,307927531,11311,ERX1468220,ERS1021837,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2435,0.6858,0.13882,0.11089,0.95824,0.83889,0.67381,0.65934,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3274,ERR1396960,ERX1468219,ERS1021836,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool11,SAMEA3714687,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714687|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:24Z|INSDC status:public|Submitter Id:028525c0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTGTCCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:028525c0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#23,15565990,Illumina sequencing of library 15565990  constructed from sample accession ERS1021836 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence GTGTCCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#23.cram,cram,867679020.0,6674454.0,SC RUN 18715 1#23,0:55 1:75,A:217474945;C:164822571;G:167876362;T:317492547;N:12595,55,75,,,217474945,164822571,167876362,317492547,12595,ERX1468219,ERS1021836,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2603,0.68608,0.12849,0.11771,0.96102,0.86393,0.75427,0.75216,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3275,ERR1396959,ERX1468218,ERS1021835,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool10,SAMEA3714686,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714686|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:24Z|INSDC status:public|Submitter Id:028091e0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:028091e0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#22,15565989,Illumina sequencing of library 15565989  constructed from sample accession ERS1021835 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence GATCTCTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#22.cram,cram,1425817900.0,10967830.0,SC RUN 18715 1#22,0:55 1:75,A:345051299;C:279807480;G:286351903;T:514584889;N:22329,55,75,,,345051299,279807480,286351903,514584889,22329,ERX1468218,ERS1021835,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2622,0.69313,0.09204,0.09609,0.96092,0.86121,0.80711,0.77639,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3276,ERR1396958,ERX1468217,ERS1021834,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool9,SAMEA3714685,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714685|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:24Z|INSDC status:public|Submitter Id:027c2510 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGTGAGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:027c2510 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#21,15565988,Illumina sequencing of library 15565988  constructed from sample accession ERS1021834 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence GGTGAGTT.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#21.cram,cram,1190687810.0,9159137.0,SC RUN 18715 1#21,0:55 1:75,A:292015928;C:232497278;G:236971553;T:429185334;N:17717,55,75,,,292015928,232497278,236971553,429185334,17717,ERX1468217,ERS1021834,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2495,0.67758,0.0972,0.09927,0.9614,0.85636,0.79721,0.7417,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3277,ERR1396957,ERX1468216,ERS1021833,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool8,SAMEA3714684,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714684|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:23Z|INSDC status:public|Submitter Id:02779130 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCGTGAA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:02779130 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#20,15565987,Illumina sequencing of library 15565987  constructed from sample accession ERS1021833 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGCGTGAA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#20.cram,cram,1303973970.0,10030569.0,SC RUN 18715 1#20,0:55 1:75,A:323699262;C:246202232;G:244684849;T:489368284;N:19343,55,75,,,323699262,246202232,244684849,489368284,19343,ERX1468216,ERS1021833,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.23948,0.64862,0.1092,0.08683,0.95475,0.84701,0.70823,0.68883,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3278,ERR1396956,ERX1468215,ERS1021832,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool7,SAMEA3714683,SC,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 05 03T14:22:16Z|ENA LAST UPDATE:2015 12 16T13:42:23Z|External Id:SAMEA3714683|INSDC center name:SC|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:23Z|INSDC status:public|Submitter Id:02728820 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACCACCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:02728820 a001 11e5 a811 68b59976a382|scientific name:Danio rerio|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#19,15565986,Illumina sequencing of library 15565986  constructed from sample accession ERS1021832 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TACCACCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#19.cram,cram,1329866070.0,10229739.0,SC RUN 18715 1#19,0:55 1:75,A:315629504;C:262180035;G:265909770;T:486124294;N:22467,55,75,,,315629504,262180035,265909770,486124294,22467,ERX1468215,ERS1021832,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26735,0.68059,0.10095,0.08031,0.95668,0.8506,0.77085,0.66858,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3279,ERR1396955,ERX1468214,ERS1021831,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool6,SAMEA3714682,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714682|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:22Z|INSDC status:public|Submitter Id:026df440 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGAAGCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:026df440 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#18,15565985,Illumina sequencing of library 15565985  constructed from sample accession ERS1021831 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGAAGCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#18.cram,cram,1300062270.0,10000479.0,SC RUN 18715 1#18,0:55 1:75,A:321356779;C:240911282;G:242606920;T:495167318;N:19971,55,75,,,321356779,240911282,242606920,495167318,19971,ERX1468214,ERS1021831,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.22684,0.66682,0.10814,0.09195,0.95459,0.83954,0.67286,0.67162,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3280,ERR1396954,ERX1468213,ERS1021830,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool5,SAMEA3714681,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714681|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:22Z|INSDC status:public|Submitter Id:02691240 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGTTCCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:02691240 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#17,15565984,Illumina sequencing of library 15565984  constructed from sample accession ERS1021830 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TTGTTCCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#17.cram,cram,1166716720.0,8974744.0,SC RUN 18715 1#17,0:55 1:75,A:287614034;C:219682343;G:221881661;T:437520268;N:18414,55,75,,,287614034,219682343,221881661,437520268,18414,ERX1468213,ERS1021830,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.25116,0.66445,0.12441,0.08818,0.95909,0.84885,0.69453,0.7162,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3281,ERR1396953,ERX1468212,ERS1021829,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool4,SAMEA3714680,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714680|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:22Z|INSDC status:public|Submitter Id:02647e60 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCTTCA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:02647e60 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#16,15565983,Illumina sequencing of library 15565983  constructed from sample accession ERS1021829 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TCTCTTCA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#16.cram,cram,1415891230.0,10891471.0,SC RUN 18715 1#16,0:55 1:75,A:332572529;C:292629114;G:295967966;T:494699963;N:21658,55,75,,,332572529,292629114,295967966,494699963,21658,ERX1468212,ERS1021829,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.23384,0.70534,0.06934,0.08759,0.95739,0.86042,0.79594,0.76555,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3282,ERR1396952,ERX1468211,ERS1021828,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool3,SAMEA3714679,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714679|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:21Z|INSDC status:public|Submitter Id:025f9c60 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTGAAGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:025f9c60 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#15,15565982,Illumina sequencing of library 15565982  constructed from sample accession ERS1021828 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGTGAAGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#15.cram,cram,1091596610.0,8396897.0,SC RUN 18715 1#15,0:55 1:75,A:270576408;C:202237595;G:202729752;T:416035948;N:16907,55,75,,,270576408,202237595,202729752,416035948,16907,ERX1468211,ERS1021828,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.28959,0.67455,0.12746,0.09696,0.95627,0.84739,0.75164,0.69012,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3283,ERR1396951,ERX1468210,ERS1021827,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool2,SAMEA3714678,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714678|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:20Z|INSDC status:public|Submitter Id:025b2f90 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGACGGA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:025b2f90 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#14,15565981,Illumina sequencing of library 15565981  constructed from sample accession ERS1021827 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TAGACGGA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#14.cram,cram,1424509710.0,10957767.0,SC RUN 18715 1#14,0:55 1:75,A:348169018;C:272115640;G:273182753;T:531020289;N:22010,55,75,,,348169018,272115640,273182753,531020289,22010,ERX1468210,ERS1021827,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2292,0.65644,0.10511,0.0875,0.95915,0.85234,0.69056,0.68379,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3284,ERR1396950,ERX1468209,ERS1021826,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 pool1,SAMEA3714677,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714677|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:20Z|INSDC status:public|Submitter Id:025674a0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCTGATA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:025674a0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#13,15565980,Illumina sequencing of library 15565980  constructed from sample accession ERS1021826 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGCTGATA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#13.cram,cram,1452792510.0,11175327.0,SC RUN 18715 1#13,0:55 1:75,A:359560977;C:274958695;G:272305584;T:545944539;N:22715,55,75,,,359560977,274958695,272305584,545944539,22715,ERX1468209,ERS1021826,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.24221,0.60013,0.1432,0.10473,0.96055,0.86007,0.66055,0.6747,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3285,ERR1396949,ERX1468208,ERS1021825,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 12,SAMEA3714676,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714676|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:19Z|INSDC status:public|Submitter Id:0251e0c0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCATCCTA is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:0251e0c0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#12,15565979,Illumina sequencing of library 15565979  constructed from sample accession ERS1021825 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TCATCCTA.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#12.cram,cram,1608472580.0,12372866.0,SC RUN 18715 1#12,0:55 1:75,A:404901235;C:290947157;G:303965794;T:608632943;N:25451,55,75,,,404901235,290947157,303965794,608632943,25451,ERX1468208,ERS1021825,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2273,0.65734,0.12152,0.09054,0.95889,0.84981,0.68627,0.68775,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3286,ERR1396948,ERX1468207,ERS1021824,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 11,SAMEA3714675,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714675|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:18Z|INSDC status:public|Submitter Id:024d4ce0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGAACAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:024d4ce0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#11,15565978,Illumina sequencing of library 15565978  constructed from sample accession ERS1021824 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TAGAACAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#11.cram,cram,897051870.0,6900399.0,SC RUN 18715 1#11,0:55 1:75,A:220938513;C:161647650;G:163544059;T:350906574;N:15074,55,75,,,220938513,161647650,163544059,350906574,15074,ERX1468207,ERS1021824,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.26135,0.66385,0.15249,0.09627,0.96136,0.84745,0.69383,0.68405,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3287,ERR1396947,ERX1468206,ERS1021823,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 10,SAMEA3714674,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714674|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:17Z|INSDC status:public|Submitter Id:0248b900 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACAGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:0248b900 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#10,15565977,Illumina sequencing of library 15565977  constructed from sample accession ERS1021823 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGACAGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#10.cram,cram,1573823550.0,12106335.0,SC RUN 18715 1#10,0:55 1:75,A:363384484;C:304042702;G:379066700;T:527307225;N:22439,55,75,,,363384484,304042702,379066700,527307225,22439,ERX1468206,ERS1021823,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.17836,0.59028,0.08314,0.08385,0.96784,0.87245,0.75876,0.70702,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3288,ERR1396946,ERX1468205,ERS1021822,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 9,SAMEA3714673,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714673|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:17Z|INSDC status:public|Submitter Id:02442520 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTACGAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:02442520 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#9,15565976,Illumina sequencing of library 15565976  constructed from sample accession ERS1021822 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TCTACGAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#9.cram,cram,599478750.0,4611375.0,SC RUN 18715 1#9,0:55 1:75,A:145117653;C:108563285;G:109102899;T:236685511;N:9402,55,75,,,145117653,108563285,109102899,236685511,9402,ERX1468205,ERS1021822,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.31141,0.66577,0.18759,0.1161,0.96357,0.84402,0.73409,0.69276,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3289,ERR1396945,ERX1468204,ERS1021821,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 8,SAMEA3714672,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714672|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:16Z|INSDC status:public|Submitter Id:023f6a30 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGCGTAC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:023f6a30 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#8,15565975,Illumina sequencing of library 15565975  constructed from sample accession ERS1021821 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TTGCGTAC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#8.cram,cram,1193277410.0,9179057.0,SC RUN 18715 1#8,0:55 1:75,A:290229621;C:224944134;G:227209459;T:450875515;N:18681,55,75,,,290229621,224944134,227209459,450875515,18681,ERX1468204,ERS1021821,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.22304,0.6634,0.10459,0.09132,0.96035,0.84693,0.67447,0.67247,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3290,ERR1396944,ERX1468203,ERS1021820,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 7,SAMEA3714671,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714671|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:15Z|INSDC status:public|Submitter Id:023ad650 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCGCACC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:023ad650 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#7,15565974,Illumina sequencing of library 15565974  constructed from sample accession ERS1021820 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TTCGCACC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#7.cram,cram,822619850.0,6327845.0,SC RUN 18715 1#7,0:55 1:75,A:182325606;C:177471690;G:169651549;T:293157711;N:13294,55,75,,,182325606,177471690,169651549,293157711,13294,ERX1468203,ERS1021820,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.2736,0.72672,0.1062,0.134,0.96402,0.86229,0.81394,0.64899,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3291,ERR1396943,ERX1468202,ERS1021819,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 6,SAMEA3714670,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714670|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:15Z|INSDC status:public|Submitter Id:02364270 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTTCTCC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:02364270 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#6,15565973,Illumina sequencing of library 15565973  constructed from sample accession ERS1021819 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGTTCTCC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#6.cram,cram,1526737160.0,11744132.0,SC RUN 18715 1#6,0:55 1:75,A:370604602;C:293431714;G:305344651;T:557331793;N:24400,55,75,,,370604602,293431714,305344651,557331793,24400,ERX1468202,ERS1021819,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.23539,0.69383,0.0856,0.10159,0.96607,0.87207,0.81525,0.78863,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3292,ERR1396942,ERX1468201,ERS1021818,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 5,SAMEA3714669,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714669|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:14Z|INSDC status:public|Submitter Id:0231ae90 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TACCGAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:0231ae90 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#5,15565972,Illumina sequencing of library 15565972  constructed from sample accession ERS1021818 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TACCGAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#5.cram,cram,923048880.0,7100376.0,SC RUN 18715 1#5,0:55 1:75,A:209248416;C:189889509;G:200530173;T:323367578;N:13204,55,75,,,209248416,189889509,200530173,323367578,13204,ERX1468201,ERS1021818,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.23299,0.717,0.10162,0.1331,0.96605,0.86734,0.75818,0.75423,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3293,ERR1396941,ERX1468200,ERS1021817,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 4,SAMEA3714668,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714668|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:14Z|INSDC status:public|Submitter Id:022d1ab0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGTTAGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:022d1ab0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#4,15565971,Illumina sequencing of library 15565971  constructed from sample accession ERS1021817 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TCGTTAGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#4.cram,cram,1081678910.0,8320607.0,SC RUN 18715 1#4,0:55 1:75,A:259400186;C:209307730;G:212739447;T:400214701;N:16846,55,75,,,259400186,209307730,212739447,400214701,16846,ERX1468200,ERS1021817,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.253,0.69262,0.11045,0.09908,0.95803,0.84912,0.6975,0.70204,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3294,ERR1396940,ERX1468199,ERS1021816,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 3,SAMEA3714667,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714667|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:13Z|INSDC status:public|Submitter Id:022886d0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTACTCGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:022886d0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#3,15565970,Illumina sequencing of library 15565970  constructed from sample accession ERS1021816 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TTACTCGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#3.cram,cram,1437294560.0,11056112.0,SC RUN 18715 1#3,0:55 1:75,A:353141810;C:270482948;G:281738554;T:531909058;N:22190,55,75,,,353141810,270482948,281738554,531909058,22190,ERX1468199,ERS1021816,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.27212,0.66651,0.10866,0.07863,0.96361,0.86667,0.77606,0.74721,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3295,ERR1396939,ERX1468198,ERS1021815,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 2,SAMEA3714666,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714666|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:12Z|INSDC status:public|Submitter Id:0223f2f0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TATGTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:0223f2f0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#2,15565969,Illumina sequencing of library 15565969  constructed from sample accession ERS1021815 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TATGTGGC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#2.cram,cram,1346842250.0,10360325.0,SC RUN 18715 1#2,0:55 1:75,A:324386882;C:269227704;G:266914612;T:486294112;N:18940,55,75,,,324386882,269227704,266914612,486294112,18940,ERX1468198,ERS1021815,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.23527,0.69235,0.09138,0.10237,0.95704,0.85352,0.69393,0.71672,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3296,ERR1396938,ERX1468197,ERS1021814,ERP013756,PRJEB12296,Baseline expression from transcriptional profiling of zebrafish developmental stages 2,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029,Transcriptome Analysis,Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 453,,,ZMP phenotype 129 1 1,SAMEA3714665,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714665|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:12Z|INSDC status:public|Submitter Id:021c51d0 a001 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 129 clutch 1  collected at blastula   128 cells stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTCTATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:021c51d0 a001 11e5 a811 68b59976a382|strain:mixed,,,,,,,,,Illumina HiSeq 2000 paired end sequencing,SC EXP 18715 1#1,15565968,Illumina sequencing of library 15565968  constructed from sample accession ERS1021814 for study accession ERP013756.  This is part of an Illumina multiplexed sequencing run 18715 1.  This submission includes reads tagged with the sequence TGTCTATC.,Transcriptome counting qPCR only,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2000,,ERP013756,Illumina HiSeq 2000 paired end sequencing,ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16,18715_1#1.cram,cram,1085069570.0,8346689.0,SC RUN 18715 1#1,0:55 1:75,A:266004670;C:201413974;G:203732132;T:413902105;N:16689,55,75,,,266004670,201413974,203732132,413902105,16689,ERX1468197,ERS1021814,ERA612386,European Nucleotide Archive,Wellcome Sanger Institute,2,0.29316,0.68235,0.14106,0.11023,0.96518,0.86608,0.81257,0.77324,55,75,T,B,mate1 technical by mapping diff,illumina,hiseq_era,3prime,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2015-12-16,Blastula,Embryo,Whole Organism,All anatomical structures
3773,ERR1442915,ERX1513292,ERS1079238,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 F,SAMEA3892104,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892104|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:15Z|INSDC status:public|Submitter Id:74f7efb0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74f7efb0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#85,16564962,Illumina sequencing of library 16564962  constructed from sample accession ERS1079238 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GAGGATGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#85.cram,cram,314892800.0,1574464.0,SC RUN 19912 2#85,0:100 1:100,A:82558933;C:74678065;G:74534120;T:82610778;N:510904,100,100,,,82558933,74678065,74534120,82610778,510904,ERX1513292,ERS1079238,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9628,0.96475,0.08339,0.08221,0.76161,0.76181,0.47698,0.46738,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3774,ERR1442914,ERX1513291,ERS1079236,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 E,SAMEA3892102,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892102|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:14Z|INSDC status:public|Submitter Id:74ebe1c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74ebe1c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#84,16564950,Illumina sequencing of library 16564950  constructed from sample accession ERS1079236 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTAAGGTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#84.cram,cram,322627600.0,1613138.0,SC RUN 19912 2#84,0:100 1:100,A:84999841;C:75875551;G:75910472;T:85321055;N:520681,100,100,,,84999841,75875551,75910472,85321055,520681,ERX1513291,ERS1079236,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95813,0.96125,0.08165,0.07951,0.76124,0.76215,0.47244,0.47127,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3775,ERR1442913,ERX1513290,ERS1079235,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 D,SAMEA3892101,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892101|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:13Z|INSDC status:public|Submitter Id:74dc0340 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74dc0340 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#83,16564938,Illumina sequencing of library 16564938  constructed from sample accession ERS1079235 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GCTCCTTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#83.cram,cram,308027400.0,1540137.0,SC RUN 19912 2#83,0:100 1:100,A:80859937;C:72994072;G:72868157;T:80816369;N:488865,100,100,,,80859937,72994072,72868157,80816369,488865,ERX1513290,ERS1079235,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96298,0.96586,0.08256,0.08085,0.76134,0.76292,0.54254,0.54325,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3776,ERR1442912,ERX1513289,ERS1079234,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 C,SAMEA3892100,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892100|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:13Z|INSDC status:public|Submitter Id:74cff550 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74cff550 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#82,16564926,Illumina sequencing of library 16564926  constructed from sample accession ERS1079234 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GAGCCAAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#82.cram,cram,410458800.0,2052294.0,SC RUN 19912 2#82,0:100 1:100,A:107151100;C:97706268;G:98040100;T:106903907;N:657425,100,100,,,107151100,97706268,98040100,106903907,657425,ERX1513289,ERS1079234,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96359,0.96534,0.07966,0.08004,0.76073,0.76189,0.53183,0.52523,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3777,ERR1442911,ERX1513288,ERS1079233,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 B,SAMEA3892099,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892099|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:12Z|INSDC status:public|Submitter Id:74c3c050 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74c3c050 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#81,16564914,Illumina sequencing of library 16564914  constructed from sample accession ERS1079233 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GGAATGAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#81.cram,cram,415723800.0,2078619.0,SC RUN 19912 2#81,0:100 1:100,A:110839963;C:96429320;G:96952651;T:110828522;N:673344,100,100,,,110839963,96429320,96952651,110828522,673344,ERX1513288,ERS1079233,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96088,0.96065,0.08499,0.08481,0.76077,0.7615,0.53805,0.52991,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3783,ERR1442905,ERX1513282,ERS1079225,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 G,SAMEA3892091,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892091|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:09Z|INSDC status:public|Submitter Id:747ca530 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:747ca530 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#75,16564937,Illumina sequencing of library 16564937  constructed from sample accession ERS1079225 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GAATCTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#75.cram,cram,321158400.0,1605792.0,SC RUN 19912 2#75,0:100 1:100,A:84427770;C:75812729;G:75844090;T:84554971;N:518840,100,100,,,84427770,75812729,75844090,84554971,518840,ERX1513282,ERS1079225,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95996,0.96707,0.07228,0.07135,0.76506,0.76473,0.54227,0.5389,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3784,ERR1442904,ERX1513281,ERS1079224,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 E,SAMEA3892090,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892090|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:09Z|INSDC status:public|Submitter Id:7470e560 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7470e560 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#74,16564925,Illumina sequencing of library 16564925  constructed from sample accession ERS1079224 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GGTCGTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#74.cram,cram,341783400.0,1708917.0,SC RUN 19912 2#74,0:100 1:100,A:88190119;C:82291882;G:82302253;T:88460796;N:538350,100,100,,,88190119,82291882,82302253,88460796,538350,ERX1513281,ERS1079224,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96634,0.96399,0.1249,0.12509,0.7682,0.77009,0.54256,0.53701,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3785,ERR1442903,ERX1513280,ERS1079223,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 D,SAMEA3892089,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892089|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:08Z|INSDC status:public|Submitter Id:74652590 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74652590 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#73,16564913,Illumina sequencing of library 16564913  constructed from sample accession ERS1079223 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GCAACATT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#73.cram,cram,376389200.0,1881946.0,SC RUN 19912 2#73,0:100 1:100,A:97375280;C:90591867;G:90734474;T:97080419;N:607160,100,100,,,97375280,90591867,90734474,97080419,607160,ERX1513280,ERS1079223,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96669,0.96824,0.07935,0.07909,0.76613,0.76735,0.53332,0.53296,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3786,ERR1442902,ERX1513279,ERS1079222,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 C,SAMEA3892088,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892088|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:08Z|INSDC status:public|Submitter Id:74593eb0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74593eb0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#72,16564996,Illumina sequencing of library 16564996  constructed from sample accession ERS1079222 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GACGGATT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#72.cram,cram,316284200.0,1581421.0,SC RUN 19912 2#72,0:100 1:100,A:83357996;C:74273358;G:74363677;T:83784698;N:504471,100,100,,,83357996,74273358,74363677,83784698,504471,ERX1513279,ERS1079222,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95929,0.96516,0.08045,0.07933,0.76656,0.76852,0.46751,0.46006,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3787,ERR1442901,ERX1513278,ERS1079221,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 B,SAMEA3892087,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892087|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:07Z|INSDC status:public|Submitter Id:744d30c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:744d30c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#71,16564984,Illumina sequencing of library 16564984  constructed from sample accession ERS1079221 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence GTGTCCTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#71.cram,cram,350598000.0,1752990.0,SC RUN 19912 2#71,0:100 1:100,A:89716766;C:85449802;G:85466640;T:89398842;N:565950,100,100,,,89716766,85449802,85466640,89398842,565950,ERX1513278,ERS1079221,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96911,0.96883,0.09062,0.09034,0.76664,0.76842,0.4769,0.46509,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3793,ERR1442895,ERX1513272,ERS1079213,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 127 F,SAMEA3892079,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892079|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:05Z|INSDC status:public|Submitter Id:7405c780 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7405c780 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#65,16564912,Illumina sequencing of library 16564912  constructed from sample accession ERS1079213 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TTGTTCCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#65.cram,cram,319851400.0,1599257.0,SC RUN 19912 2#65,0:100 1:100,A:84646608;C:75059158;G:75425171;T:84212339;N:508124,100,100,,,84646608,75059158,75425171,84212339,508124,ERX1513272,ERS1079213,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96062,0.95718,0.10877,0.10924,0.74503,0.74686,0.54141,0.53513,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3794,ERR1442894,ERX1513271,ERS1079212,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 127 E,SAMEA3892078,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892078|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:04Z|INSDC status:public|Submitter Id:73fa07b0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73fa07b0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#64,16564995,Illumina sequencing of library 16564995  constructed from sample accession ERS1079212 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TCTCTTCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#64.cram,cram,321745800.0,1608729.0,SC RUN 19912 2#64,0:100 1:100,A:86238410;C:74348180;G:74377155;T:86271068;N:510987,100,100,,,86238410,74348180,74377155,86271068,510987,ERX1513271,ERS1079212,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95321,0.95586,0.10963,0.10891,0.74552,0.74692,0.5571,0.55541,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3795,ERR1442893,ERX1513270,ERS1079211,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 127 D,SAMEA3892077,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892077|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:04Z|INSDC status:public|Submitter Id:73ee20d0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73ee20d0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#63,16564983,Illumina sequencing of library 16564983  constructed from sample accession ERS1079211 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TGTGAAGA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#63.cram,cram,356308200.0,1781541.0,SC RUN 19912 2#63,0:100 1:100,A:96477011;C:81237640;G:80957592;T:97070154;N:565803,100,100,,,96477011,81237640,80957592,97070154,565803,ERX1513270,ERS1079211,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95213,0.95353,0.14632,0.14663,0.74911,0.75012,0.58109,0.57817,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3796,ERR1442892,ERX1513269,ERS1079210,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 127 C,SAMEA3892076,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892076|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:03Z|INSDC status:public|Submitter Id:73e26100 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73e26100 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#62,16564971,Illumina sequencing of library 16564971  constructed from sample accession ERS1079210 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TAGACGGA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#62.cram,cram,366145800.0,1830729.0,SC RUN 19912 2#62,0:100 1:100,A:98016027;C:84951226;G:84890780;T:97720678;N:567089,100,100,,,98016027,84951226,84890780,97720678,567089,ERX1513269,ERS1079210,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.953,0.95761,0.1218,0.12268,0.74558,0.7474,0.57015,0.57264,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3797,ERR1442891,ERX1513268,ERS1079209,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 127 B,SAMEA3892075,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892075|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:03Z|INSDC status:public|Submitter Id:73d6c840 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:73d6c840 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 2#61,16564959,Illumina sequencing of library 16564959  constructed from sample accession ERS1079209 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 2.  This submission includes reads tagged with the sequence TGCTGATA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_2#61.cram,cram,336684800.0,1683424.0,SC RUN 19912 2#61,0:100 1:100,A:91187690;C:76793238;G:76741441;T:91411027;N:551404,100,100,,,91187690,76793238,76741441,91411027,551404,ERX1513268,ERS1079209,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95251,0.95634,0.12738,0.1267,0.74673,0.74724,0.57609,0.44446,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3863,ERR1442825,ERX1513202,ERS1079238,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 F,SAMEA3892104,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892104|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:15Z|INSDC status:public|Submitter Id:74f7efb0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74f7efb0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#85,16564962,Illumina sequencing of library 16564962  constructed from sample accession ERS1079238 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GAGGATGG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#85.cram,cram,314004400.0,1570022.0,SC RUN 19912 1#85,0:100 1:100,A:82327525;C:74524831;G:74327038;T:82383998;N:441008,100,100,,,82327525,74524831,74327038,82383998,441008,ERX1513202,ERS1079238,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96277,0.96453,0.0825,0.08172,0.76047,0.7623,0.47444,0.47107,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3864,ERR1442824,ERX1513201,ERS1079236,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 E,SAMEA3892102,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892102|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:14Z|INSDC status:public|Submitter Id:74ebe1c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74ebe1c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#84,16564950,Illumina sequencing of library 16564950  constructed from sample accession ERS1079236 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTAAGGTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#84.cram,cram,321930400.0,1609652.0,SC RUN 19912 1#84,0:100 1:100,A:84857452;C:75709002;G:75759149;T:85156463;N:448334,100,100,,,84857452,75709002,75759149,85156463,448334,ERX1513201,ERS1079236,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95817,0.96328,0.08157,0.08026,0.76191,0.7629,0.47403,0.46554,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3865,ERR1442823,ERX1513200,ERS1079235,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 D,SAMEA3892101,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892101|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:13Z|INSDC status:public|Submitter Id:74dc0340 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74dc0340 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#83,16564938,Illumina sequencing of library 16564938  constructed from sample accession ERS1079235 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GCTCCTTG.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#83.cram,cram,307398200.0,1536991.0,SC RUN 19912 1#83,0:100 1:100,A:80712906;C:72871056;G:72743435;T:80644107;N:426696,100,100,,,80712906,72871056,72743435,80644107,426696,ERX1513200,ERS1079235,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96343,0.9654,0.08221,0.0808,0.75952,0.76106,0.54896,0.54056,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3866,ERR1442822,ERX1513199,ERS1079234,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 C,SAMEA3892100,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892100|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:13Z|INSDC status:public|Submitter Id:74cff550 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74cff550 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#82,16564926,Illumina sequencing of library 16564926  constructed from sample accession ERS1079234 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GAGCCAAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#82.cram,cram,410125800.0,2050629.0,SC RUN 19912 1#82,0:100 1:100,A:107115764;C:97625180;G:97953858;T:106868985;N:562013,100,100,,,107115764,97625180,97953858,106868985,562013,ERX1513199,ERS1079234,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96354,0.964,0.0793,0.07889,0.75994,0.76069,0.53368,0.52729,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3867,ERR1442821,ERX1513198,ERS1079233,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 131 B,SAMEA3892099,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:1k cell   ZFS:0000011|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892099|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:12Z|INSDC status:public|Submitter Id:74c3c050 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74c3c050 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#81,16564914,Illumina sequencing of library 16564914  constructed from sample accession ERS1079233 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GGAATGAT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#81.cram,cram,415282000.0,2076410.0,SC RUN 19912 1#81,0:100 1:100,A:110725428;C:96374955;G:96890721;T:110712528;N:578368,100,100,,,110725428,96374955,96890721,110712528,578368,ERX1513198,ERS1079233,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96123,0.95086,0.08562,0.08319,0.761,0.76256,0.53717,0.53508,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3873,ERR1442815,ERX1513192,ERS1079225,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 G,SAMEA3892091,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892091|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:09Z|INSDC status:public|Submitter Id:747ca530 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:747ca530 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#75,16564937,Illumina sequencing of library 16564937  constructed from sample accession ERS1079225 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GAATCTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#75.cram,cram,320317400.0,1601587.0,SC RUN 19912 1#75,0:100 1:100,A:84246990;C:75625859;G:75676172;T:84329676;N:438703,100,100,,,84246990,75625859,75676172,84329676,438703,ERX1513192,ERS1079225,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96012,0.96187,0.07199,0.07113,0.7638,0.76504,0.54164,0.53859,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3874,ERR1442814,ERX1513191,ERS1079224,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 E,SAMEA3892090,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892090|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:09Z|INSDC status:public|Submitter Id:7470e560 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7470e560 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#74,16564925,Illumina sequencing of library 16564925  constructed from sample accession ERS1079224 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GGTCGTGT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#74.cram,cram,341046000.0,1705230.0,SC RUN 19912 1#74,0:100 1:100,A:87993875;C:82161975;G:82168901;T:88263051;N:458198,100,100,,,87993875,82161975,82168901,88263051,458198,ERX1513191,ERS1079224,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9675,0.96375,0.12595,0.12539,0.76881,0.76946,0.54613,0.54225,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3875,ERR1442813,ERX1513190,ERS1079223,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 D,SAMEA3892089,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892089|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:08Z|INSDC status:public|Submitter Id:74652590 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74652590 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#73,16564913,Illumina sequencing of library 16564913  constructed from sample accession ERS1079223 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GCAACATT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#73.cram,cram,376182600.0,1880913.0,SC RUN 19912 1#73,0:100 1:100,A:97374736;C:90556560;G:90669433;T:97054077;N:527794,100,100,,,97374736,90556560,90669433,97054077,527794,ERX1513190,ERS1079223,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96734,0.96868,0.07834,0.07829,0.76518,0.76639,0.53371,0.47387,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3876,ERR1442812,ERX1513189,ERS1079222,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 C,SAMEA3892088,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892088|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:08Z|INSDC status:public|Submitter Id:74593eb0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74593eb0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#72,16564996,Illumina sequencing of library 16564996  constructed from sample accession ERS1079222 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GACGGATT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#72.cram,cram,316128400.0,1580642.0,SC RUN 19912 1#72,0:100 1:100,A:83347439;C:74260037;G:74357148;T:83739793;N:423983,100,100,,,83347439,74260037,74357148,83739793,423983,ERX1513189,ERS1079222,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.9594,0.96506,0.08139,0.08028,0.7638,0.76443,0.46873,0.46282,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3877,ERR1442811,ERX1513188,ERS1079221,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 129 B,SAMEA3892087,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:128 cell   ZFS:0000008|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892087|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:07Z|INSDC status:public|Submitter Id:744d30c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:744d30c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#71,16564984,Illumina sequencing of library 16564984  constructed from sample accession ERS1079221 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence GTGTCCTT.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#71.cram,cram,350696800.0,1753484.0,SC RUN 19912 1#71,0:100 1:100,A:89752856;C:85498337;G:85530894;T:89430070;N:484643,100,100,,,89752856,85498337,85530894,89430070,484643,ERX1513188,ERS1079221,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.96959,0.96869,0.08922,0.08951,0.7665,0.76832,0.48024,0.47685,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures
3883,ERR1442805,ERX1513182,ERS1079213,ERP014517,PRJEB12982,Baseline expression from transcriptional profiling of zebrafish developmental stages 3,Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130,Transcriptome Analysis,RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling,ArrayExpress:E ERAD 475,,,ZMP phenotype 127 F,SAMEA3892079,Wellcome Sanger Institute,ArrayExpress DevelopmentalStage:Blastula:Dome   ZFS:0000015|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892079|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:05Z|INSDC status:public|Submitter Id:7405c780 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7405c780 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed,,,,,,,,,Illumina HiSeq 2500 paired end sequencing,SC EXP 19912 1#65,16564912,Illumina sequencing of library 16564912  constructed from sample accession ERS1079213 for study accession ERP014517.  This is part of an Illumina multiplexed sequencing run 19912 1.  This submission includes reads tagged with the sequence TTGTTCCA.,RNA seq dUTP eukaryotic,,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,ILLUMINA,Illumina HiSeq 2500,,ERP014517,Illumina HiSeq 2500 paired end sequencing,ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16,19912_1#65.cram,cram,319650200.0,1598251.0,SC RUN 19912 1#65,0:100 1:100,A:84569209;C:75051754;G:75435564;T:84147340;N:446333,100,100,,,84569209,75051754,75435564,84147340,446333,ERX1513182,ERS1079213,ERA648700,European Nucleotide Archive,Wellcome Sanger Institute,2,0.95984,0.95588,0.10937,0.10946,0.74667,0.74781,0.537,0.53181,100,100,B,B,biological fallback assumption,illumina,hiseq_era,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United Kingdom,2016-03-10,Blastula,Embryo,Whole Organism,All anatomical structures