rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse 33609,SRR30247666,SRX25709110,SRS22350227,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep3,KO3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep3,hey25nt / replicate 3,hey25nt / replicate 3,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_3_1.fq.gz KO_3_2.fq.gz,fastq fastq,6793426200.0,22644754.0,KO 3 1.fq.gz,0:150 1:150,A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253,150,150,,,1845779030,1550159613,1539592354,1857860950,34253,SRX25709110,SRS22350227,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94555,0.92523,0.0631,0.06139,0.76672,0.76968,0.56501,0.57019,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System 33610,SRR30247667,SRX25709109,SRS22350226,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt / mutantzebrafish hearts at 3 mpf rep2,KO2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep2,hey25nt / replicate 2,hey25nt / replicate 2,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_2_1.fq.gz KO_2_2.fq.gz,fastq fastq,6577703400.0,21925678.0,KO 2 1.fq.gz,0:150 1:150,A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044,150,150,,,1795319867,1492750718,1485718638,1803881133,33044,SRX25709109,SRS22350226,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94565,0.92404,0.06212,0.06008,0.77281,0.77546,0.55478,0.56589,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System 33611,SRR30247668,SRX25709108,SRS22350225,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep1,KO1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep1,hey25nt / replicate 1,hey25nt / replicate 1,RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_1_2.fq.gz KO_1_1.fq.gz,fastq fastq,6592159500.0,21973865.0,KO 1 1.fq.gz,0:150 1:150,A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050,150,150,,,1800707634,1491918482,1484850929,1814648405,34050,SRX25709108,SRS22350225,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94443,0.92689,0.06601,0.06488,0.76883,0.77033,0.58332,0.52175,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System 33612,SRR30247669,SRX25709107,SRS22350224,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep3,WT3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep3,hey2+/+ replicate 3,hey2+/+ replicate 3,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_3_1.fq.gz WT_3_2.fq.gz,fastq fastq,6582842700.0,21942809.0,WT 3 1.fq.gz,0:150 1:150,A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159,150,150,,,1796301568,1494922823,1487154319,1804427831,36159,SRX25709107,SRS22350224,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94446,0.92023,0.06492,0.06289,0.76694,0.7699,0.55651,0.53407,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System 33613,SRR30247670,SRX25709106,SRS22350223,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep2,WT2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep2,hey2+/+ replicate 2,hey2+/+ replicate 2,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_2_2.fq.gz WT_2_1.fq.gz,fastq fastq,6632526000.0,22108420.0,WT 2 1.fq.gz,0:150 1:150,A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298,150,150,,,1811392253,1505075703,1495091968,1820928778,37298,SRX25709106,SRS22350223,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94532,0.92096,0.06496,0.06227,0.76564,0.76909,0.56754,0.57117,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System 33614,SRR30247671,SRX25709105,SRS22350222,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep1,WT1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep1,hey2+/+ replicate 1,hey2+/+ replicate 1,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_1_1.fq.gz WT_1_2.fq.gz,fastq fastq,6601461900.0,22004873.0,WT 1 1.fq.gz,0:150 1:150,A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021,150,150,,,1816453592,1485325900,1476423985,1823223402,35021,SRX25709105,SRS22350222,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.9482,0.92609,0.05744,0.0553,0.77423,0.77699,0.53884,0.54075,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System 35865,SRR33094447,SRX28358130,SRS24687221,SRP578075,PRJNA1249535,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,PRJNA1249535,Other,Single cell transcriptome sequencing provides high resolution transcriptome data on the molecular mechanisms by which Tau P301S mediates Alzheimer's disease like pathological changes in zebrafish providing unique insights into the pathogenesis of Tau pathology mediated cell to cell interactions in AD.,,,TauP301S 4,,TauP301S 4,,breed:zebrafish|age:4 month|collection date:2024 05 18|geo loc name:China:Shantou|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,TauP301S 4,TauP301S 4,tissue,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PolyA,PAIRED,BGISEQ,BGISEQ-500,,SRP578075,,,AD4_S1_L001_R1_001.fastq.gz AD4_S1_L001_R2_001.fastq.gz,fastq fastq,129145897746.0,427635423.0,AD4 S1 L001 R1 001.fastq.gz,0:151 1:151,A:37870495722;C:24917123133;G:22536537853;T:43764941649;N:56799389,151,151,,,37870495722,24917123133,22536537853,43764941649,56799389,SRX28358130,SRS24687221,SRA2110625,Shantou university medical college|Neuroscience Center,Shantou university medical college,,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,poly_a,unknown,sc,unknown,unknown,,China,2025-04-13,Adult,Adult,Brain,Nervous System 35866,SRR33094448,SRX28358129,SRS24687220,SRP578075,PRJNA1249535,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,PRJNA1249535,Other,Single cell transcriptome sequencing provides high resolution transcriptome data on the molecular mechanisms by which Tau P301S mediates Alzheimer's disease like pathological changes in zebrafish providing unique insights into the pathogenesis of Tau pathology mediated cell to cell interactions in AD.,,,TauP301S 3,,TauP301S 3,,breed:zebrafish|age:4 month|collection date:2024 05 17|geo loc name:China:Shantou|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,TauP301S 3,TauP301S 3,tissue,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PolyA,PAIRED,BGISEQ,BGISEQ-500,,SRP578075,,,AD3_S1_L001_R1_001.fastq.gz AD3_S1_L001_R2_001.fastq.gz,fastq fastq,130723873718.0,432860509.0,AD3 S1 L001 R1 001.fastq.gz,0:151 1:151,A:38509426012;C:25238065771;G:22586405501;T:44332442791;N:57533643,151,151,,,38509426012,25238065771,22586405501,44332442791,57533643,SRX28358129,SRS24687220,SRA2110625,Shantou university medical college|Neuroscience Center,Shantou university medical college,,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,poly_a,unknown,sc,unknown,unknown,,China,2025-04-13,Adult,Adult,Brain,Nervous System 35867,SRR33094449,SRX28358128,SRS24687219,SRP578075,PRJNA1249535,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,PRJNA1249535,Other,Single cell transcriptome sequencing provides high resolution transcriptome data on the molecular mechanisms by which Tau P301S mediates Alzheimer's disease like pathological changes in zebrafish providing unique insights into the pathogenesis of Tau pathology mediated cell to cell interactions in AD.,,,TauP301S 2,,TauP301S 2,,breed:zebrafish|age:4 month|collection date:2024 05 16|geo loc name:China:Shantou|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,TauP301S 2,TauP301S 2,tissue,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PolyA,PAIRED,BGISEQ,BGISEQ-500,,SRP578075,,,AD2_S1_L001_R1_001.fastq.gz AD2_S1_L001_R2_001.fastq.gz,fastq fastq,130145208498.0,430944399.0,AD2 S1 L001 R1 001.fastq.gz,0:151 1:151,A:37802929660;C:22980541562;G:20982421471;T:48304142442;N:75173363,151,151,,,37802929660,22980541562,20982421471,48304142442,75173363,SRX28358128,SRS24687219,SRA2110625,Shantou university medical college|Neuroscience Center,Shantou university medical college,,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,poly_a,unknown,sc,unknown,unknown,,China,2025-04-13,Adult,Adult,Brain,Nervous System 35868,SRR33094450,SRX28358127,SRS24687218,SRP578075,PRJNA1249535,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,PRJNA1249535,Other,Single cell transcriptome sequencing provides high resolution transcriptome data on the molecular mechanisms by which Tau P301S mediates Alzheimer's disease like pathological changes in zebrafish providing unique insights into the pathogenesis of Tau pathology mediated cell to cell interactions in AD.,,,TauP301S 1,,TauP301S 1,,breed:zebrafish|age:4 month|collection date:2024 05 15|geo loc name:China:Shantou|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,TauP301S 1,TauP301S 1,tissue,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PolyA,PAIRED,BGISEQ,BGISEQ-500,,SRP578075,,,AD1_S1_L001_R1_001.fastq.gz AD1_S1_L001_R2_001.fastq.gz,fastq fastq,151897861402.0,502973051.0,AD1 S1 L001 R1 001.fastq.gz,0:151 1:151,A:44290580650;C:26864167508;G:24611898618;T:56043760812;N:87453814,151,151,,,44290580650,26864167508,24611898618,56043760812,87453814,SRX28358127,SRS24687218,SRA2110625,Shantou university medical college|Neuroscience Center,Shantou university medical college,,,,,,,,,,,,T,B,mate1 technical by mapping diff,bgi,bgi,unknown,poly_a,unknown,sc,unknown,unknown,,China,2025-04-13,Adult,Adult,Brain,Nervous System 35869,SRR33094451,SRX28358126,SRS24687216,SRP578075,PRJNA1249535,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,PRJNA1249535,Other,Single cell transcriptome sequencing provides high resolution transcriptome data on the molecular mechanisms by which Tau P301S mediates Alzheimer's disease like pathological changes in zebrafish providing unique insights into the pathogenesis of Tau pathology mediated cell to cell interactions in AD.,,,Wildtype2,,Wildtype2,,breed:zebrafish|age:4 month|collection date:2024 05 14|geo loc name:China:Shantou|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,Wildtype2,Wildtype2,tissue,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PolyA,SINGLE,BGISEQ,BGISEQ-500,,SRP578075,,,WT2_S1_L001_I1_001.fastq.gz,fastq,15183539264.0,1897942408.0,WT2 S1 L001 I1 001.fastq.gz,0:8,A:5024041949;C:2632487194;G:2782260146;T:4744243552;N:506423,8,,,,5024041949,2632487194,2782260146,4744243552,506423,SRX28358126,SRS24687216,SRA2110625,Shantou university medical college|Neuroscience Center,Shantou university medical college,,,,,,,,,,,,T,,under 1.2% mapping rate,bgi,bgi,unknown,poly_a,unknown,sc,unknown,unknown,,China,2025-04-18,Adult,Adult,Brain,Nervous System 35870,SRR33094452,SRX28358125,SRS24687217,SRP578075,PRJNA1249535,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,PRJNA1249535,Other,Single cell transcriptome sequencing provides high resolution transcriptome data on the molecular mechanisms by which Tau P301S mediates Alzheimer's disease like pathological changes in zebrafish providing unique insights into the pathogenesis of Tau pathology mediated cell to cell interactions in AD.,,,Wildtype1,,Wildtype1,,breed:zebrafish|age:4 month|collection date:2024 05 13|geo loc name:China:Shantou|sex:not determined|tissue:brain|BioSampleModel:Model organism or animal,,,,,,,,,P301S Mutant Tau Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3B Inhibitors with Anti Neurodegenerative Efficacy,Wildtype1,Wildtype1,tissue,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PolyA,SINGLE,BGISEQ,BGISEQ-500,,SRP578075,,,WT1_S1_L001_I1_001.fastq.gz,fastq,7991376264.0,998922033.0,WT1 S1 L001 I1 001.fastq.gz,0:8,A:2573734851;C:1426474966;G:1492966198;T:2498173074;N:27175,8,,,,2573734851,1426474966,1492966198,2498173074,27175,SRX28358125,SRS24687217,SRA2110625,Shantou university medical college|Neuroscience Center,Shantou university medical college,,,,,,,,,,,,T,,under 1.2% mapping rate,bgi,bgi,unknown,poly_a,unknown,sc,unknown,unknown,,China,2025-04-18,Adult,Adult,Brain,Nervous System 48812,SRR7341816,SRX4215318,SRS3417596,SRP150521,PRJNA476105,Transcriptome analysis of wildtype and sox3 / zebrafish adult ovary,GSE115806,Transcriptome Analysis,The goals of this study are to compare the differentially expressed genes between wildtype and sox3 / zebrafish ovaries based on RNA seq data and some of these genes were validated by qRT–PCR. Further the differentially expressed genes were devided into up regulated and down regulated genes for GO and KEGG analysis. Overall design: Ovary mRNA profiles of adult wildtype and sox3 / zebrafish were generated by deep sequencing.,,pubmed:30588557,,KO mix,GSM3190267,,source name:Ovary|strain:AB|tissue:Ovary|age:Adult,KO mix,Sequenced reads were trimmed for adaptor sequence and masked for low complexity or low quality sequence then mapped to GRCz10 whole genome using HISAT mapped to genes using Bowtie2. fragments per kilo bases per million fragments FPKM were calculated using RSEM. Genome build: GRCz10 Supplementary files format and content: The text files include the Ensembl ID of genes and the FPKM values for each Sample.,Ovary,,Ovaries were isolated frozen on dry ice and RNA was harvested using Trizol reagent. Agilent RNA 6000 nano Reagents Port 1 was used for RNA qualities analysis by Agilent 2100 Bioanalyzer. RNA libraries were prepared for sequencing using standard BGISEQ 500 protocols.,,strain:AB|tissue:Ovary|age:Adult,GSM3190267,GSM3190267: KO mix; Danio rerio; RNA Seq,GSM3190267,,1,Ovaries were isolated frozen on dry ice and RNA was harvested using Trizol reagent. Agilent RNA 6000 nano Reagents Port 1 was used for RNA qualities analysis by Agilent 2100 Bioanalyzer. RNA libraries were prepared for sequencing using standard BGISEQ 500 protocols.,GEO Accession:GSM3190267,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP150521,,,KO-ovary.fq.gz,fastq,1173123100.0,23462462.0,GSM3190267 r1,0:50 1:0,A:308426188;C:271468505;G:292019086;T:300532126;N:677195,50,0,,,308426188,271468505,292019086,300532126,677195,SRX4215318,SRS3417596,SRA721702,GEO,Wuhan university,1,0.93261,,0.02261,,0.76132,,0.4585,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,China,2018-06-14,Adult,Adult,Gonad,Reproductive System 48813,SRR7341815,SRX4215317,SRS3417595,SRP150521,PRJNA476105,Transcriptome analysis of wildtype and sox3 / zebrafish adult ovary,GSE115806,Transcriptome Analysis,The goals of this study are to compare the differentially expressed genes between wildtype and sox3 / zebrafish ovaries based on RNA seq data and some of these genes were validated by qRT–PCR. Further the differentially expressed genes were devided into up regulated and down regulated genes for GO and KEGG analysis. Overall design: Ovary mRNA profiles of adult wildtype and sox3 / zebrafish were generated by deep sequencing.,,pubmed:30588557,,WT mix,GSM3190266,,source name:Ovary|strain:AB|tissue:Ovary|age:Adult,WT mix,Sequenced reads were trimmed for adaptor sequence and masked for low complexity or low quality sequence then mapped to GRCz10 whole genome using HISAT mapped to genes using Bowtie2. fragments per kilo bases per million fragments FPKM were calculated using RSEM. Genome build: GRCz10 Supplementary files format and content: The text files include the Ensembl ID of genes and the FPKM values for each Sample.,Ovary,,Ovaries were isolated frozen on dry ice and RNA was harvested using Trizol reagent. Agilent RNA 6000 nano Reagents Port 1 was used for RNA qualities analysis by Agilent 2100 Bioanalyzer. RNA libraries were prepared for sequencing using standard BGISEQ 500 protocols.,,strain:AB|tissue:Ovary|age:Adult,GSM3190266,GSM3190266: WT mix; Danio rerio; RNA Seq,GSM3190266,,1,Ovaries were isolated frozen on dry ice and RNA was harvested using Trizol reagent. Agilent RNA 6000 nano Reagents Port 1 was used for RNA qualities analysis by Agilent 2100 Bioanalyzer. RNA libraries were prepared for sequencing using standard BGISEQ 500 protocols.,GEO Accession:GSM3190266,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP150521,,,WT-ovary.fq.gz,fastq,1176463600.0,23529272.0,GSM3190266 r1,0:50 1:0,A:311869864;C:270650722;G:289863261;T:303489229;N:590524,50,0,,,311869864,270650722,289863261,303489229,590524,SRX4215317,SRS3417595,SRA721702,GEO,Wuhan university,1,0.93489,,0.02765,,0.75627,,0.46875,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,China,2018-06-14,Adult,Adult,Gonad,Reproductive System 55972,SRR10895875,SRX7564604,SRS6001805,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 009,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 9,CL100103178 L01 9,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_567_1.fq.gz CL100103178_L01_567_2.fq.gz,fastq fastq,7926659000.0,79266590.0,CL100103178 L01 567 1.fq.gz,0:100 1:100,A:2177233520;C:1750763335;G:1793690428;T:2195598681;N:9373036,100,100,,,2177233520,1750763335,1793690428,2195598681,9373036,SRX7564604,SRS6001805,SRA1026516,BGI|BGI-Research,BGI,1,0.90731,,0.11069,,0.70548,,0.53521,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Spinal Cord,Nervous System 55973,SRR10895876,SRX7564603,SRS6001805,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 009,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 8,CL100103178 L01 8,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_563_1.fq.gz CL100103178_L01_563_2.fq.gz,fastq fastq,9981278800.0,99812788.0,CL100103178 L01 563 1.fq.gz,0:100 1:100,A:2753622693;C:2192952746;G:2243702494;T:2779006876;N:11993991,100,100,,,2753622693,2192952746,2243702494,2779006876,11993991,SRX7564603,SRS6001805,SRA1026516,BGI|BGI-Research,BGI,1,0.90715,,0.11372,,0.71467,,0.5089,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Spinal Cord,Nervous System 55974,SRR10895877,SRX7564602,SRS6001805,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 009,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 7,CL100103178 L01 7,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_562_1.fq.gz CL100103178_L01_562_2.fq.gz,fastq fastq,8857552800.0,88575528.0,CL100103178 L01 562 1.fq.gz,0:100 1:100,A:2418167382;C:1969456035;G:2015821568;T:2442764114;N:11343701,100,100,,,2418167382,1969456035,2015821568,2442764114,11343701,SRX7564602,SRS6001805,SRA1026516,BGI|BGI-Research,BGI,1,0.90895,,0.10978,,0.71336,,0.50272,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Spinal Cord,Nervous System 55975,SRR10895878,SRX7564601,SRS6001805,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 009,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 6,CL100103178 L01 6,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_564_1.fq.gz CL100103178_L01_564_2.fq.gz,fastq fastq,7468499200.0,74684992.0,CL100103178 L01 564 1.fq.gz,0:100 1:100,A:2052720985;C:1649448011;G:1690698471;T:2068073830;N:7557903,100,100,,,2052720985,1649448011,1690698471,2068073830,7557903,SRX7564601,SRS6001805,SRA1026516,BGI|BGI-Research,BGI,1,0.90905,,0.10883,,0.69578,,0.54193,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Spinal Cord,Nervous System 55976,SRR10895881,SRX7564598,SRS6001805,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 009,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 5,CL100103178 L01 5,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_561_1.fq.gz CL100103178_L01_561_2.fq.gz,fastq fastq,9173572800.0,91735728.0,CL100103178 L01 561 1.fq.gz,0:100 1:100,A:2527132650;C:2020739240;G:2066720461;T:2548747865;N:10232584,100,100,,,2527132650,2020739240,2066720461,2548747865,10232584,SRX7564598,SRS6001805,SRA1026516,BGI|BGI-Research,BGI,1,0.91539,,0.11063,,0.71427,,0.48162,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Spinal Cord,Nervous System 55977,SRR10895882,SRX7564597,SRS6001804,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 008,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 10,CL100101924 L01 10,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_545_2.fq.gz CL100101924_L01_545_1.fq.gz,fastq fastq,9098943800.0,90989438.0,CL100101924 L01 545 1.fq.gz,0:100 1:100,A:2494855042;C:2016596912;G:2050775890;T:2525488540;N:11227416,100,100,,,2494855042,2016596912,2050775890,2525488540,11227416,SRX7564597,SRS6001804,SRA1026516,BGI|BGI-Research,BGI,1,0.93737,,0.07867,,0.76061,,0.53141,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Heart,Cardiovascular System 55978,SRR10895883,SRX7564596,SRS6001804,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 008,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 4,CL100103178 L01 4,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_570_2.fq.gz CL100103178_L01_570_1.fq.gz,fastq fastq,6098551000.0,60985510.0,CL100103178 L01 570 1.fq.gz,0:100 1:100,A:1665824009;C:1362170830;G:1387665851;T:1676412762;N:6477548,100,100,,,1665824009,1362170830,1387665851,1676412762,6477548,SRX7564596,SRS6001804,SRA1026516,BGI|BGI-Research,BGI,1,0.9281,,0.07522,,0.77715,,0.52597,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Heart,Cardiovascular System 55979,SRR10895884,SRX7564595,SRS6001804,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 008,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 3,CL100103178 L01 3,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_568_2.fq.gz CL100103178_L01_568_1.fq.gz,fastq fastq,7674097800.0,76740978.0,CL100103178 L01 568 1.fq.gz,0:100 1:100,A:2066126344;C:1741642506;G:1775116741;T:2081782365;N:9429844,100,100,,,2066126344,1741642506,1775116741,2081782365,9429844,SRX7564595,SRS6001804,SRA1026516,BGI|BGI-Research,BGI,1,0.92233,,0.07056,,0.76029,,0.55672,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Heart,Cardiovascular System 55980,SRR10895885,SRX7564594,SRS6001804,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 008,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01 2,CL100103178 L01 2,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_569_1.fq.gz CL100103178_L01_569_2.fq.gz,fastq fastq,10407446000.0,104074460.0,CL100103178 L01 569 1.fq.gz,0:100 1:100,A:2806156548;C:2359148121;G:2410612409;T:2819342794;N:12186128,100,100,,,2806156548,2359148121,2410612409,2819342794,12186128,SRX7564594,SRS6001804,SRA1026516,BGI|BGI-Research,BGI,1,0.9202,,0.06921,,0.77384,,0.56843,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Heart,Cardiovascular System 55981,SRR10895886,SRX7564593,SRS6001804,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 008,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L01,CL100103178 L01,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L01_571_2.fq.gz CL100103178_L01_571_1.fq.gz,fastq fastq,8778390800.0,87783908.0,CL100103178 L01 571 1.fq.gz,0:100 1:100,A:2364575734;C:1991773326;G:2031934839;T:2379995507;N:10111394,100,100,,,2364575734,1991773326,2031934839,2379995507,10111394,SRX7564593,SRS6001804,SRA1026516,BGI|BGI-Research,BGI,1,0.92192,,0.08454,,0.7544,,0.53692,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Heart,Cardiovascular System 55982,SRR10895887,SRX7564592,SRS6001802,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 007,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 9,CL100101924 L01 9,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_550_1.fq.gz CL100101924_L01_550_2.fq.gz,fastq fastq,8780226200.0,87802262.0,CL100101924 L01 550 1.fq.gz,0:100 1:100,A:2363664067;C:1983383192;G:2025795704;T:2396528723;N:10854514,100,100,,,2363664067,1983383192,2025795704,2396528723,10854514,SRX7564592,SRS6001802,SRA1026516,BGI|BGI-Research,BGI,1,0.92686,,0.10085,,0.70903,,0.51488,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Skin,Surface Structure 55983,SRR10895888,SRX7564591,SRS6001802,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 007,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 8,CL100101924 L01 8,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_549_2.fq.gz CL100101924_L01_549_1.fq.gz,fastq fastq,9805051200.0,98050512.0,CL100101924 L01 549 1.fq.gz,0:100 1:100,A:2663706429;C:2193838939;G:2241619945;T:2693859046;N:12026841,100,100,,,2663706429,2193838939,2241619945,2693859046,12026841,SRX7564591,SRS6001802,SRA1026516,BGI|BGI-Research,BGI,1,0.92652,,0.0983,,0.71043,,0.53401,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Skin,Surface Structure 55984,SRR10895889,SRX7564590,SRS6001802,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 007,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 7,CL100101924 L01 7,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_547_1.fq.gz CL100101924_L01_547_2.fq.gz,fastq fastq,9137587600.0,91375876.0,CL100101924 L01 547 1.fq.gz,0:100 1:100,A:2471506783;C:2052808667;G:2096159921;T:2505897469;N:11214760,100,100,,,2471506783,2052808667,2096159921,2505897469,11214760,SRX7564590,SRS6001802,SRA1026516,BGI|BGI-Research,BGI,1,0.93126,,0.09864,,0.70613,,0.51947,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Skin,Surface Structure 55985,SRR10895890,SRX7564589,SRS6001802,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 007,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 6,CL100101924 L01 6,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_551_1.fq.gz CL100101924_L01_551_2.fq.gz,fastq fastq,7665129600.0,76651296.0,CL100101924 L01 551 1.fq.gz,0:100 1:100,A:2062939973;C:1731950056;G:1768675635;T:2092110510;N:9453426,100,100,,,2062939973,1731950056,1768675635,2092110510,9453426,SRX7564589,SRS6001802,SRA1026516,BGI|BGI-Research,BGI,1,0.93022,,0.10662,,0.70512,,0.50773,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Skin,Surface Structure 55986,SRR10895892,SRX7564587,SRS6001802,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 007,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 5,CL100101924 L01 5,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_548_1.fq.gz CL100101924_L01_548_2.fq.gz,fastq fastq,6527814200.0,65278142.0,CL100101924 L01 548 1.fq.gz,0:100 1:100,A:1748761735;C:1483522306;G:1516468410;T:1771028617;N:8033132,100,100,,,1748761735,1483522306,1516468410,1771028617,8033132,SRX7564587,SRS6001802,SRA1026516,BGI|BGI-Research,BGI,1,0.93149,,0.09371,,0.70542,,0.51664,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Skin,Surface Structure 55987,SRR10895893,SRX7564586,SRS6001801,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 006,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 11,CL100103858 L02 11,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_517_1.fq.gz CL100103858_L02_517_2.fq.gz,fastq fastq,8506603800.0,85066038.0,CL100103858 L02 517 1.fq.gz,0:100 1:100,A:2292801692;C:1923556878;G:1974694874;T:2303714790;N:11835566,100,100,,,2292801692,1923556878,1974694874,2303714790,11835566,SRX7564586,SRS6001801,SRA1026516,BGI|BGI-Research,BGI,1,0.96138,,0.03993,,0.82976,,0.64498,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Muscle,Muscular System 55988,SRR10895894,SRX7564585,SRS6001801,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 006,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 13,CL100103858 L01 13,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_514_2.fq.gz CL100103858_L01_514_1.fq.gz,fastq fastq,7391075800.0,73910758.0,CL100103858 L01 514 1.fq.gz,0:100 1:100,A:1927614555;C:1731326620;G:1786947018;T:1932511997;N:12675610,100,100,,,1927614555,1731326620,1786947018,1932511997,12675610,SRX7564585,SRS6001801,SRA1026516,BGI|BGI-Research,BGI,1,0.93702,,0.04631,,0.77985,,0.53119,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Muscle,Muscular System 55989,SRR10895895,SRX7564584,SRS6001801,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 006,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 12,CL100103858 L01 12,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_515_1.fq.gz CL100103858_L01_515_2.fq.gz,fastq fastq,8374057600.0,83740576.0,CL100103858 L01 515 1.fq.gz,0:100 1:100,A:2230542787;C:1917435448;G:1965561976;T:2246062032;N:14455357,100,100,,,2230542787,1917435448,1965561976,2246062032,14455357,SRX7564584,SRS6001801,SRA1026516,BGI|BGI-Research,BGI,1,0.94954,,0.04127,,0.78589,,0.61201,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Muscle,Muscular System 55990,SRR10895896,SRX7564583,SRS6001801,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 006,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 11,CL100103858 L01 11,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_516_1.fq.gz CL100103858_L01_516_2.fq.gz,fastq fastq,7909115600.0,79091156.0,CL100103858 L01 516 1.fq.gz,0:100 1:100,A:2073091675;C:1842299453;G:1898493755;T:2081930446;N:13300271,100,100,,,2073091675,1842299453,1898493755,2081930446,13300271,SRX7564583,SRS6001801,SRA1026516,BGI|BGI-Research,BGI,1,0.95755,,0.02912,,0.83483,,0.61158,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Muscle,Muscular System 55991,SRR10895897,SRX7564582,SRS6001801,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 006,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 10,CL100103858 L02 10,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_518_1.fq.gz CL100103858_L02_518_2.fq.gz,fastq fastq,9462489200.0,94624892.0,CL100103858 L02 518 1.fq.gz,0:100 1:100,A:2473166981;C:2213506014;G:2273238020;T:2489490295;N:13087890,100,100,,,2473166981,2213506014,2273238020,2489490295,13087890,SRX7564582,SRS6001801,SRA1026516,BGI|BGI-Research,BGI,1,0.95581,,0.04117,,0.79784,,0.53207,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Muscle,Muscular System 55992,SRR10895898,SRX7564581,SRS6001800,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 005,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 10,CL100103858 L01 10,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_513_1.fq.gz CL100103858_L01_513_2.fq.gz,fastq fastq,9129585000.0,91295850.0,CL100103858 L01 513 1.fq.gz,0:100 1:100,A:2497450580;C:2015129450;G:2071393661;T:2529809771;N:15801538,100,100,,,2497450580,2015129450,2071393661,2529809771,15801538,SRX7564581,SRS6001800,SRA1026516,BGI|BGI-Research,BGI,1,0.93396,,0.13,,0.71431,,0.54518,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Brain,Nervous System 55993,SRR10895899,SRX7564580,SRS6001800,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 005,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 9,CL100103858 L01 9,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_509_2.fq.gz CL100103858_L01_509_1.fq.gz,fastq fastq,9063446600.0,90634466.0,CL100103858 L01 509 1.fq.gz,0:100 1:100,A:2470522817;C:2005905195;G:2066552125;T:2504876588;N:15589875,100,100,,,2470522817,2005905195,2066552125,2504876588,15589875,SRX7564580,SRS6001800,SRA1026516,BGI|BGI-Research,BGI,1,0.9334,,0.13676,,0.71614,,0.54289,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Brain,Nervous System 55994,SRR10895900,SRX7564579,SRS6001800,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 005,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 8,CL100103858 L01 8,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_510_1.fq.gz CL100103858_L01_510_2.fq.gz,fastq fastq,10414313800.0,104143138.0,CL100103858 L01 510 1.fq.gz,0:100 1:100,A:2858166440;C:2289999240;G:2356174514;T:2892047112;N:17926494,100,100,,,2858166440,2289999240,2356174514,2892047112,17926494,SRX7564579,SRS6001800,SRA1026516,BGI|BGI-Research,BGI,1,0.93036,,0.13448,,0.71045,,0.53846,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Brain,Nervous System 55995,SRR10895901,SRX7564578,SRS6001800,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 005,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 7,CL100103858 L01 7,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_511_2.fq.gz CL100103858_L01_511_1.fq.gz,fastq fastq,10057553400.0,100575534.0,CL100103858 L01 511 1.fq.gz,0:100 1:100,A:2762495630;C:2212266487;G:2274060113;T:2791456239;N:17274931,100,100,,,2762495630,2212266487,2274060113,2791456239,17274931,SRX7564578,SRS6001800,SRA1026516,BGI|BGI-Research,BGI,1,0.93578,,0.11695,,0.72005,,0.51093,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Brain,Nervous System 55996,SRR10895903,SRX7564576,SRS6001800,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 005,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 6,CL100103858 L01 6,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_512_1.fq.gz CL100103858_L01_512_2.fq.gz,fastq fastq,8575207600.0,85752076.0,CL100103858 L01 512 1.fq.gz,0:100 1:100,A:2340755177;C:1898089765;G:1951995517;T:2369794410;N:14572731,100,100,,,2340755177,1898089765,1951995517,2369794410,14572731,SRX7564576,SRS6001800,SRA1026516,BGI|BGI-Research,BGI,1,0.93429,,0.12481,,0.71384,,0.52278,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Brain,Nervous System 55997,SRR10895904,SRX7564575,SRS6001799,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 004,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 9,CL100103858 L02 9,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_527_2.fq.gz CL100103858_L02_527_1.fq.gz,fastq fastq,9389292400.0,93892924.0,CL100103858 L02 527 1.fq.gz,0:100 1:100,A:2535177343;C:2107498353;G:2159172216;T:2574271698;N:13172790,100,100,,,2535177343,2107498353,2159172216,2574271698,13172790,SRX7564575,SRS6001799,SRA1026516,BGI|BGI-Research,BGI,1,0.94054,,0.10829,,0.70818,,0.51214,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Swim Bladder,Swim Bladder 55998,SRR10895905,SRX7564574,SRS6001799,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 004,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L02 9,CL100103178 L02 9,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L02_580_2.fq.gz CL100103178_L02_580_1.fq.gz,fastq fastq,9451878800.0,94518788.0,CL100103178 L02 580 1.fq.gz,0:100 1:100,A:2482432185;C:2200816673;G:2254475373;T:2504225593;N:9928976,100,100,,,2482432185,2200816673,2254475373,2504225593,9928976,SRX7564574,SRS6001799,SRA1026516,BGI|BGI-Research,BGI,1,0.91363,,0.08854,,0.67399,,0.52315,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Swim Bladder,Swim Bladder 55999,SRR10895906,SRX7564573,SRS6001799,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 004,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103178 L02 8,CL100103178 L02 8,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103178_L02_579_1.fq.gz CL100103178_L02_579_2.fq.gz,fastq fastq,6784370200.0,67843702.0,CL100103178 L02 579 1.fq.gz,0:100 1:100,A:1799307225;C:1565118646;G:1599826091;T:1813320759;N:6797479,100,100,,,1799307225,1565118646,1599826091,1813320759,6797479,SRX7564573,SRS6001799,SRA1026516,BGI|BGI-Research,BGI,1,0.91866,,0.10227,,0.71928,,0.50827,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Swim Bladder,Swim Bladder 56000,SRR10895907,SRX7564572,SRS6001799,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 004,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 8,CL100103858 L02 8,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_529_2.fq.gz CL100103858_L02_529_1.fq.gz,fastq fastq,10614517200.0,106145172.0,CL100103858 L02 529 1.fq.gz,0:100 1:100,A:2821297968;C:2430515408;G:2486443963;T:2861653662;N:14606199,100,100,,,2821297968,2430515408,2486443963,2861653662,14606199,SRX7564572,SRS6001799,SRA1026516,BGI|BGI-Research,BGI,1,0.94747,,0.08863,,0.64632,,0.50637,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Swim Bladder,Swim Bladder 56001,SRR10895908,SRX7564571,SRS6001799,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 004,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 7,CL100103858 L02 7,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_526_2.fq.gz CL100103858_L02_526_1.fq.gz,fastq fastq,8829000400.0,88290004.0,CL100103858 L02 526 1.fq.gz,0:100 1:100,A:2346419057;C:2025176439;G:2073455037;T:2371666164;N:12283703,100,100,,,2346419057,2025176439,2073455037,2371666164,12283703,SRX7564571,SRS6001799,SRA1026516,BGI|BGI-Research,BGI,1,0.93744,,0.08552,,0.70918,,0.49156,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Swim Bladder,Swim Bladder 56002,SRR10895909,SRX7564570,SRS6001798,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 003,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 6,CL100103858 L02 6,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_524_1.fq.gz CL100103858_L02_524_2.fq.gz,fastq fastq,8863838800.0,88638388.0,CL100103858 L02 524 1.fq.gz,0:100 1:100,A:2346347928;C:2037236505;G:2089998345;T:2378150886;N:12105136,100,100,,,2346347928,2037236505,2089998345,2378150886,12105136,SRX7564570,SRS6001798,SRA1026516,BGI|BGI-Research,BGI,1,0.93198,,0.08128,,0.74519,,0.48951,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Jaw,Surface Structure 56003,SRR10895910,SRX7564569,SRS6001798,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 003,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 5,CL100103858 L02 5,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_521_2.fq.gz CL100103858_L02_521_1.fq.gz,fastq fastq,10301853000.0,103018530.0,CL100103858 L02 521 1.fq.gz,0:100 1:100,A:2719789797;C:2379371302;G:2435354849;T:2753122052;N:14215000,100,100,,,2719789797,2379371302,2435354849,2753122052,14215000,SRX7564569,SRS6001798,SRA1026516,BGI|BGI-Research,BGI,1,0.93582,,0.08016,,0.73466,,0.4997,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Jaw,Surface Structure 56004,SRR10895911,SRX7564568,SRS6001798,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 003,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 4,CL100103858 L02 4,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_522_1.fq.gz CL100103858_L02_522_2.fq.gz,fastq fastq,8856151600.0,88561516.0,CL100103858 L02 522 1.fq.gz,0:100 1:100,A:2327973616;C:2055012813;G:2104952956;T:2356113813;N:12098402,100,100,,,2327973616,2055012813,2104952956,2356113813,12098402,SRX7564568,SRS6001798,SRA1026516,BGI|BGI-Research,BGI,1,0.93888,,0.07312,,0.74337,,0.50608,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Jaw,Surface Structure 56005,SRR10895912,SRX7564567,SRS6001798,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 003,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 3,CL100103858 L02 3,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_525_1.fq.gz CL100103858_L02_525_2.fq.gz,fastq fastq,8393966200.0,83939662.0,CL100103858 L02 525 1.fq.gz,0:100 1:100,A:2205916604;C:1944354784;G:1992482736;T:2239434609;N:11777467,100,100,,,2205916604,1944354784,1992482736,2239434609,11777467,SRX7564567,SRS6001798,SRA1026516,BGI|BGI-Research,BGI,1,0.93522,,0.07124,,0.73939,,0.50385,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Jaw,Surface Structure 56006,SRR10895914,SRX7564565,SRS6001798,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 003,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02 2,CL100103858 L02 2,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_523_2.fq.gz CL100103858_L02_523_1.fq.gz,fastq fastq,9645085400.0,96450854.0,CL100103858 L02 523 1.fq.gz,0:100 1:100,A:2543300716;C:2229112849;G:2282624833;T:2576502560;N:13544442,100,100,,,2543300716,2229112849,2282624833,2576502560,13544442,SRX7564565,SRS6001798,SRA1026516,BGI|BGI-Research,BGI,1,0.93673,,0.0738,,0.74337,,0.49427,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Jaw,Surface Structure 56007,SRR10895915,SRX7564564,SRS6001797,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 002,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 4,CL100101924 L01 4,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_542_2.fq.gz CL100101924_L01_542_1.fq.gz,fastq fastq,9311999200.0,93119992.0,CL100101924 L01 542 1.fq.gz,0:100 1:100,A:2545207764;C:2065502824;G:2111148485;T:2578747353;N:11392774,100,100,,,2545207764,2065502824,2111148485,2578747353,11392774,SRX7564564,SRS6001797,SRA1026516,BGI|BGI-Research,BGI,1,0.91339,,0.10797,,0.69792,,0.52261,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Gill,Respiratory System 56008,SRR10895916,SRX7564563,SRS6001797,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 002,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 3,CL100101924 L01 3,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_541_1.fq.gz CL100101924_L01_541_2.fq.gz,fastq fastq,10478802600.0,104788026.0,CL100101924 L01 541 1.fq.gz,0:100 1:100,A:2866250643;C:2322460084;G:2375280057;T:2901876128;N:12935688,100,100,,,2866250643,2322460084,2375280057,2901876128,12935688,SRX7564563,SRS6001797,SRA1026516,BGI|BGI-Research,BGI,1,0.9209,,0.11359,,0.69858,,0.53578,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Gill,Respiratory System 56009,SRR10895917,SRX7564562,SRS6001797,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 002,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01 2,CL100101924 L01 2,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_543_1.fq.gz CL100101924_L01_543_2.fq.gz,fastq fastq,10370355000.0,103703550.0,CL100101924 L01 543 1.fq.gz,0:100 1:100,A:2824450277;C:2308377166;G:2360285452;T:2864390654;N:12851451,100,100,,,2824450277,2308377166,2360285452,2864390654,12851451,SRX7564562,SRS6001797,SRA1026516,BGI|BGI-Research,BGI,1,0.91018,,0.09651,,0.70224,,0.53831,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Gill,Respiratory System 56010,SRR10895918,SRX7564561,SRS6001797,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 002,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100101924 L01,CL100101924 L01,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100101924_L01_544_2.fq.gz CL100101924_L01_544_1.fq.gz,fastq fastq,8686710000.0,86867100.0,CL100101924 L01 544 1.fq.gz,0:100 1:100,A:2361387592;C:1935295339;G:1982562294;T:2396806096;N:10658679,100,100,,,2361387592,1935295339,1982562294,2396806096,10658679,SRX7564561,SRS6001797,SRA1026516,BGI|BGI-Research,BGI,1,0.90603,,0.12145,,0.69412,,0.52836,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Gill,Respiratory System 56011,SRR10895919,SRX7564560,SRS6001797,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 002,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L02,CL100103858 L02,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L02_530_1.fq.gz CL100103858_L02_530_2.fq.gz,fastq fastq,9390776200.0,93907762.0,CL100103858 L02 530 1.fq.gz,0:100 1:100,A:2561256067;C:2084956400;G:2134804271;T:2596713447;N:13046015,100,100,,,2561256067,2084956400,2134804271,2596713447,13046015,SRX7564560,SRS6001797,SRA1026516,BGI|BGI-Research,BGI,1,0.91926,,0.11028,,0.69485,,0.54756,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Gill,Respiratory System 56012,SRR10895920,SRX7564559,SRS6001795,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 001,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 5,CL100103858 L01 5,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_506_2.fq.gz CL100103858_L01_506_1.fq.gz,fastq fastq,8894951400.0,88949514.0,CL100103858 L01 506 1.fq.gz,0:100 1:100,A:2342120919;C:2080816976;G:2120799988;T:2335970174;N:15243343,100,100,,,2342120919,2080816976,2120799988,2335970174,15243343,SRX7564559,SRS6001795,SRA1026516,BGI|BGI-Research,BGI,1,0.9583,,0.02358,,0.88609,,0.21491,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Liver,Liver and Biliary System 56013,SRR10895921,SRX7564558,SRS6001795,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 001,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 4,CL100103858 L01 4,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_502_1.fq.gz CL100103858_L01_502_2.fq.gz,fastq fastq,9016276200.0,90162762.0,CL100103858 L01 502 1.fq.gz,0:100 1:100,A:2351547777;C:2123700654;G:2170958690;T:2354500550;N:15568529,100,100,,,2351547777,2123700654,2170958690,2354500550,15568529,SRX7564558,SRS6001795,SRA1026516,BGI|BGI-Research,BGI,1,0.951,,0.0278,,0.84476,,0.28629,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Liver,Liver and Biliary System 56014,SRR10895922,SRX7564557,SRS6001795,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 001,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 3,CL100103858 L01 3,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_504_2.fq.gz CL100103858_L01_504_1.fq.gz,fastq fastq,8533635000.0,85336350.0,CL100103858 L01 504 1.fq.gz,0:100 1:100,A:2252394702;C:1967888849;G:2019361190;T:2279066552;N:14923707,100,100,,,2252394702,1967888849,2019361190,2279066552,14923707,SRX7564557,SRS6001795,SRA1026516,BGI|BGI-Research,BGI,1,0.94212,,0.04536,,0.80099,,0.49769,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Liver,Liver and Biliary System 56015,SRR10895923,SRX7564556,SRS6001795,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 001,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01 2,CL100103858 L01 2,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_503_1.fq.gz CL100103858_L01_503_2.fq.gz,fastq fastq,9344789800.0,93447898.0,CL100103858 L01 503 1.fq.gz,0:100 1:100,A:2456933695;C:2188901617;G:2230043511;T:2452921108;N:15989869,100,100,,,2456933695,2188901617,2230043511,2452921108,15989869,SRX7564556,SRS6001795,SRA1026516,BGI|BGI-Research,BGI,1,0.95239,,0.01872,,0.88026,,0.24265,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Liver,Liver and Biliary System 56016,SRR10895925,SRX7564554,SRS6001795,SRP241982,PRJNA599026,Project of basal ray finned fishes,PRJNA599026,Other,The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.,,pubmed:33545088;pubmed:12470943,,,Zebrafish 001,,strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of Danio rerio : adult,CL100103858 L01,CL100103858 L01,,,,RNA-Seq,TRANSCRIPTOMIC,RANDOM,PAIRED,BGISEQ,BGISEQ-500,,SRP241982,,,CL100103858_L01_501_1.fq.gz CL100103858_L01_501_2.fq.gz,fastq fastq,8939441800.0,89394418.0,CL100103858 L01 501 1.fq.gz,0:100 1:100,A:2371368780;C:2076807210;G:2121148823;T:2354885910;N:15231077,100,100,,,2371368780,2076807210,2121148823,2354885910,15231077,SRX7564554,SRS6001795,SRA1026516,BGI|BGI-Research,BGI,1,0.94776,,0.01842,,0.88822,,0.16376,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-01-15,Adult,Adult,Liver,Liver and Biliary System 57259,SRR11294128,SRX7899687,SRS6307737,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles uninj p53 pos.rep3,GSM4407932,,source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles uninj p53 pos.rep3,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of uninjured TgtpWT zebrafish,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407932,GSM4407932: Ventricles uninj p53 pos.rep3; Danio rerio; RNA Seq,GSM4407932,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407932,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAADRAAPEI-512_1.fq.gz,fastq,1835058950.0,36701179.0,GSM4407932 r1,0:50,A:502113193;C:411542245;G:409297699;T:512105813;N:0,50,,,,502113193,411542245,409297699,512105813,0,SRX7899687,SRS6307737,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93734,,0.0825,,0.77094,,0.54336,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57260,SRR11294127,SRX7899686,SRS6307736,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles uninj p53 pos.rep2,GSM4407931,,source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles uninj p53 pos.rep2,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of uninjured TgtpWT zebrafish,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407931,GSM4407931: Ventricles uninj p53 pos.rep2; Danio rerio; RNA Seq,GSM4407931,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407931,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAACRAAPEI-511_1.fq.gz,fastq,1834865450.0,36697309.0,GSM4407931 r1,0:50,A:505143598;C:405191113;G:410587735;T:513943004;N:0,50,,,,505143598,405191113,410587735,513943004,0,SRX7899686,SRS6307736,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93631,,0.08049,,0.76481,,0.50179,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57261,SRR11294126,SRX7899685,SRS6307735,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles uninj p53 pos.rep1,GSM4407930,,source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles uninj p53 pos.rep1,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of uninjured TgtpWT zebrafish,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407930,GSM4407930: Ventricles uninj p53 pos.rep1; Danio rerio; RNA Seq,GSM4407930,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407930,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAABRAAPEI-510_1.fq.gz,fastq,1834689950.0,36693799.0,GSM4407930 r1,0:50,A:504160420;C:403583740;G:412496526;T:514449264;N:0,50,,,,504160420,403583740,412496526,514449264,0,SRX7899685,SRS6307735,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93629,,0.08291,,0.77356,,0.49244,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57262,SRR11294125,SRX7899684,SRS6307734,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles uninj p53 neg.rep3,GSM4407929,,source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles uninj p53 neg.rep3,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of uninjured Tgtp53M214K zebrafish,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407929,GSM4407929: Ventricles uninj p53 neg.rep3; Danio rerio; RNA Seq,GSM4407929,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407929,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAIRAAPEI-521_1.fq.gz,fastq,1834395600.0,36687912.0,GSM4407929 r1,0:50,A:499900882;C:409384440;G:414252017;T:510858261;N:0,50,,,,499900882,409384440,414252017,510858261,0,SRX7899684,SRS6307734,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93583,,0.07847,,0.76974,,0.54357,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57263,SRR11294124,SRX7899683,SRS6307733,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles uninj p53 neg.rep2,GSM4407928,,source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles uninj p53 neg.rep2,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of uninjured Tgtp53M214K zebrafish,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407928,GSM4407928: Ventricles uninj p53 neg.rep2; Danio rerio; RNA Seq,GSM4407928,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407928,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAHRAAPEI-520_1.fq.gz,fastq,1834233850.0,36684677.0,GSM4407928 r1,0:50,A:504582681;C:405014837;G:412005765;T:512630567;N:0,50,,,,504582681,405014837,412005765,512630567,0,SRX7899683,SRS6307733,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.9324,,0.07997,,0.77975,,0.54924,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57264,SRR11294123,SRX7899682,SRS6307732,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles uninj p53 neg.rep1,GSM4407927,,source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles uninj p53 neg.rep1,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of uninjured Tgtp53M214K zebrafish,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407927,GSM4407927: Ventricles uninj p53 neg.rep1; Danio rerio; RNA Seq,GSM4407927,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407927,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAGRAAPEI-519_1.fq.gz,fastq,1834275500.0,36685510.0,GSM4407927 r1,0:50,A:505039122;C:403354337;G:413206780;T:512675261;N:0,50,,,,505039122,403354337,413206780,512675261,0,SRX7899682,SRS6307732,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93529,,0.07696,,0.77268,,0.49743,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57265,SRR11294122,SRX7899681,SRS6307731,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles inj p53 pos.rep3,GSM4407926,,source name:Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles inj p53 pos.rep3,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407926,GSM4407926: Ventricles inj p53 pos.rep3; Danio rerio; RNA Seq,GSM4407926,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407926,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAFRAAPEI-518_1.fq.gz,fastq,1835175950.0,36703519.0,GSM4407926 r1,0:50,A:499063627;C:408145558;G:418471943;T:509494822;N:0,50,,,,499063627,408145558,418471943,509494822,0,SRX7899681,SRS6307731,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.92833,,0.09812,,0.73312,,0.51303,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57266,SRR11294121,SRX7899680,SRS6307730,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles inj p53 pos.rep2,GSM4407925,,source name:Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles inj p53 pos.rep2,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407925,GSM4407925: Ventricles inj p53 pos.rep2; Danio rerio; RNA Seq,GSM4407925,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407925,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAERAAPEI-517_1.fq.gz,fastq,1835814750.0,36716295.0,GSM4407925 r1,0:50,A:502904715;C:405114927;G:414615503;T:513179605;N:0,50,,,,502904715,405114927,414615503,513179605,0,SRX7899680,SRS6307730,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.92779,,0.10001,,0.73943,,0.49706,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57267,SRR11294120,SRX7899679,SRS6307729,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles inj p53 pos.rep1,GSM4407924,,source name:Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles inj p53 pos.rep1,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407924,GSM4407924: Ventricles inj p53 pos.rep1; Danio rerio; RNA Seq,GSM4407924,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407924,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAARAAPEI-509_1.fq.gz,fastq,1835668100.0,36713362.0,GSM4407924 r1,0:50,A:499256851;C:409731957;G:416052681;T:510626611;N:0,50,,,,499256851,409731957,416052681,510626611,0,SRX7899679,SRS6307729,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.92969,,0.10126,,0.73417,,0.51885,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57268,SRR11294119,SRX7899678,SRS6307728,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles inj p53 neg.rep3,GSM4407923,,source name:Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles inj p53 neg.rep3,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407923,GSM4407923: Ventricles inj p53 neg.rep3; Danio rerio; RNA Seq,GSM4407923,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407923,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAALRAAPEI-524_1.fq.gz,fastq,1835232550.0,36704651.0,GSM4407923 r1,0:50,A:499303964;C:408224392;G:413995749;T:513708445;N:0,50,,,,499303964,408224392,413995749,513708445,0,SRX7899678,SRS6307728,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93048,,0.09466,,0.73949,,0.4978,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57269,SRR11294118,SRX7899677,SRS6307727,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles inj p53 neg.rep2,GSM4407922,,source name:Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles inj p53 neg.rep2,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407922,GSM4407922: Ventricles inj p53 neg.rep2; Danio rerio; RNA Seq,GSM4407922,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407922,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAKRAAPEI-523_1.fq.gz,fastq,1835660400.0,36713208.0,GSM4407922 r1,0:50,A:500792390;C:406784182;G:416023927;T:512059901;N:0,50,,,,500792390,406784182,416023927,512059901,0,SRX7899677,SRS6307727,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.92669,,0.09942,,0.72817,,0.51645,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 57270,SRR11294117,SRX7899676,SRS6307726,SRP252540,PRJNA612190,Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration,GSE146859,Transcriptome Analysis,Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.,,pubmed:32877671,,Ventricles inj p53 neg.rep1,GSM4407921,,source name:Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,Ventricles inj p53 neg.rep1,RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest,Ventricles of TgCmlc2:CreER; β actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes,Fish were treated 17 hours with 0.5 μM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,Fish were grown at 28 degrees. Male and female animals between 6 month and 12 month and of 2 cm in length were used.,genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 μM tamoxifen|tissue:Ventricles,GSM4407921,GSM4407921: Ventricles inj p53 neg.rep1; Danio rerio; RNA Seq,GSM4407921,,1,Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4 with q 15 and then mapped with TopHat v 2.1.1 with parameters b2 very sensitive no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.,GEO Accession:GSM4407921,RNA-Seq,TRANSCRIPTOMIC,cDNA,SINGLE,BGISEQ,BGISEQ-500,,SRP252540,,,CL100137114_L1_HK500ZEBortRAAJRAAPEI-522_1.fq.gz,fastq,1835899700.0,36717994.0,GSM4407921 r1,0:50,A:498483398;C:409943675;G:418983494;T:508489133;N:0,50,,,,498483398,409943675,418983494,508489133,0,SRX7899676,SRS6307726,SRA1054226,GEO,"Poss, Cell Biology, Duke University",1,0.93061,,0.09272,,0.73762,,0.51108,,50,,B,,usable mapping rate,bgi,bgi,unknown,cdna_unspecified,unknown,bulk,unknown,unknown,,United States,2020-03-12,Adult,Adult,Heart,Cardiovascular System 60007,SRR12109607,SRX8633610,SRS6920345,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drt3,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,F,F,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drt3.fq.gz,fastq,953116651.0,39450392.0,Drt3.fq.gz,0:24.16,A:165275545;C:266933722;G:285524079;T:235383107;N:198,24,,,,165275545,266933722,285524079,235383107,198,SRX8633610,SRS6920345,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.86243,,0.21541,,0.80294,,0.67181,,29,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60008,SRR12109608,SRX8633609,SRS6920344,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drt2,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,E,E,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drt2.fq.gz,fastq,629335361.0,26037543.0,Drt2.fq.gz,0:24.17,A:111827613;C:172564695;G:192159133;T:152783892;N:28,24,,,,111827613,172564695,192159133,152783892,28,SRX8633609,SRS6920344,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.86328,,0.21943,,0.7992,,0.64786,,26,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60009,SRR12109609,SRX8633608,SRS6920343,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drt1,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,D,D,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drt1.fq.gz,fastq,898185854.0,37273958.0,Drt1.fq.gz,0:24.10,A:155257170;C:247725871;G:276963807;T:218238980;N:26,24,,,,155257170,247725871,276963807,218238980,26,SRX8633608,SRS6920343,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.86686,,0.21764,,0.79508,,0.6694,,24,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60010,SRR12109610,SRX8633607,SRS6920342,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drc3,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,C,C,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drc3.fq.gz,fastq,912782161.0,35931507.0,Drc3.fq.gz,0:25.40,A:153448479;C:252628189;G:280829895;T:225874586;N:1012,25,,,,153448479,252628189,280829895,225874586,1012,SRX8633607,SRS6920342,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.89797,,0.21308,,0.80823,,0.62611,,23,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60011,SRR12109611,SRX8633606,SRS6920341,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drc2,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,B,B,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drc2.fq.gz,fastq,784553020.0,31429473.0,Drc2.fq.gz,0:24.96,A:128271350;C:223302609;G:241310233;T:191668193;N:635,24,,,,128271350,223302609,241310233,191668193,635,SRX8633606,SRS6920341,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.9087,,0.20487,,0.80805,,0.67324,,30,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60012,SRR12109612,SRX8633605,SRS6920340,SRP269241,PRJNA641989,Zebrafish intestinal SmallRNA,PRJNA641989,Other,A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.,,,,,Drc1,,strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal,,,,,,,,,miRNA Seq of zebrafish intestine,A,A,BGISEQ,,,miRNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,BGISEQ,BGISEQ-500,,SRP269241,,loader:fastq load.py,Drc1.fq.gz,fastq,814894343.0,32234530.0,Drc1.fq.gz,0:25.28,A:133616147;C:230834630;G:253965304;T:196477437;N:825,25,,,,133616147,230834630,253965304,196477437,825,SRX8633605,SRS6920340,SRA1092425,Kunming University of Science and Technology|faculty of life science and technology,Kunming University of Science and Technology,1,0.89344,,0.21273,,0.80738,,0.66815,,28,,B,,usable mapping rate,bgi,bgi,unknown,small_rna,unknown,bulk,unknown,unknown,,China,2020-07-10,Adult,Adult,Gut,Digestive System 60203,SRR12173066,SRX8687829,SRS6966493,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,100B,GSM4661929,,source name:SCA12|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,100B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA12,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661929,GSM4661929: 100B; Danio rerio; RNA Seq,GSM4661929,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661929,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,100B_2.fq 100B_1.fq,fastq fastq,4300755000.0,43007550.0,GSM4661929 r1,0:100 1:100,A:1195013481;C:933832983;G:962461499;T:1209447037;N:0,100,100,,,1195013481,933832983,962461499,1209447037,0,SRX8687829,SRS6966493,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91912,,0.15522,,0.71829,,0.50865,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60204,SRR12173065,SRX8687828,SRS6966492,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,99B,GSM4661928,,source name:SCA10|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,99B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA10,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661928,GSM4661928: 99B; Danio rerio; RNA Seq,GSM4661928,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661928,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,99B_2.fq 99B_1.fq,fastq fastq,4953251000.0,49532510.0,GSM4661928 r1,0:100 1:100,A:1415039103;C:1040525484;G:1060332314;T:1437354099;N:0,100,100,,,1415039103,1040525484,1060332314,1437354099,0,SRX8687828,SRS6966492,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91619,,0.16544,,0.71922,,0.51996,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60205,SRR12173064,SRX8687827,SRS6966491,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,121B,GSM4661927,,source name:SCA14|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,121B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA14,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661927,GSM4661927: 121B; Danio rerio; RNA Seq,GSM4661927,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661927,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,121B_1.fq 121B_2.fq,fastq fastq,4482694600.0,44826946.0,GSM4661927 r1,0:100 1:100,A:1292365837;C:920169200;G:950296696;T:1319862867;N:0,100,100,,,1292365837,920169200,950296696,1319862867,0,SRX8687827,SRS6966491,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90277,,0.17799,,0.72295,,0.51987,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60206,SRR12173063,SRX8687826,SRS6966490,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,97B,GSM4661926,,source name:SCA5|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,97B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA5,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661926,GSM4661926: 97B; Danio rerio; RNA Seq,GSM4661926,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661926,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,97B_1.fq 97B_2.fq,fastq fastq,5178357000.0,51783570.0,GSM4661926 r1,0:100 1:100,A:1442148425;C:1119935128;G:1149243236;T:1467030211;N:0,100,100,,,1442148425,1119935128,1149243236,1467030211,0,SRX8687826,SRS6966490,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91869,,0.1619,,0.71047,,0.50907,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60207,SRR12173062,SRX8687825,SRS6966489,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,80B,GSM4661925,,source name:SCA8|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,80B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA8,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661925,GSM4661925: 80B; Danio rerio; RNA Seq,GSM4661925,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661925,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,80B_1.fq 80B_2.fq,fastq fastq,4927736800.0,49277368.0,GSM4661925 r1,0:100 1:100,A:1384189069;C:1048151377;G:1079300714;T:1416095640;N:0,100,100,,,1384189069,1048151377,1079300714,1416095640,0,SRX8687825,SRS6966489,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.9104,,0.17333,,0.71102,,0.50853,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60208,SRR12173061,SRX8687824,SRS6966488,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,79B,GSM4661924,,source name:SCA7|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,79B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA7,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661924,GSM4661924: 79B; Danio rerio; RNA Seq,GSM4661924,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661924,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,79B_1.fq 79B_2.fq,fastq fastq,5158717400.0,51587174.0,GSM4661924 r1,0:100 1:100,A:1423369091;C:1127803059;G:1156903341;T:1450641909;N:0,100,100,,,1423369091,1127803059,1156903341,1450641909,0,SRX8687824,SRS6966488,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91578,,0.15498,,0.70841,,0.50875,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60209,SRR12173060,SRX8687823,SRS6966487,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,78B,GSM4661923,,source name:SCA6|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,78B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA6,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661923,GSM4661923: 78B; Danio rerio; RNA Seq,GSM4661923,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661923,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,78B_2.fq 78B_1.fq,fastq fastq,4080284000.0,40802840.0,GSM4661923 r1,0:100 1:100,A:1146760011;C:872005355;G:893480498;T:1168038136;N:0,100,100,,,1146760011,872005355,893480498,1168038136,0,SRX8687823,SRS6966487,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.89506,,0.16061,,0.7147,,0.51109,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60210,SRR12173059,SRX8687822,SRS6966486,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,77B,GSM4661922,,source name:SCA4|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,77B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA4,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661922,GSM4661922: 77B; Danio rerio; RNA Seq,GSM4661922,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661922,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,77B_1.fq 77B_2.fq,fastq fastq,5053965200.0,50539652.0,GSM4661922 r1,0:100 1:100,A:1432899891;C:1065155546;G:1092749323;T:1463160440;N:0,100,100,,,1432899891,1065155546,1092749323,1463160440,0,SRX8687822,SRS6966486,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90965,,0.17028,,0.71259,,0.51804,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60211,SRR12173058,SRX8687821,SRS6966485,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,95B,GSM4661921,,source name:PH8|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,95B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH8,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661921,GSM4661921: 95B; Danio rerio; RNA Seq,GSM4661921,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661921,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,95B_2.fq 95B_1.fq,fastq fastq,4984910800.0,49849108.0,GSM4661921 r1,0:100 1:100,A:1404088729;C:1063272664;G:1094657988;T:1422891419;N:0,100,100,,,1404088729,1063272664,1094657988,1422891419,0,SRX8687821,SRS6966485,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91574,,0.16729,,0.71776,,0.51526,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60212,SRR12173057,SRX8687820,SRS6966484,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,94B,GSM4661920,,source name:PH7|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,94B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH7,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661920,GSM4661920: 94B; Danio rerio; RNA Seq,GSM4661920,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661920,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,94B_2.fq 94B_1.fq,fastq fastq,4973104000.0,49731040.0,GSM4661920 r1,0:100 1:100,A:1403074698;C:1055981307;G:1089110444;T:1424937551;N:0,100,100,,,1403074698,1055981307,1089110444,1424937551,0,SRX8687820,SRS6966484,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91432,,0.16183,,0.72001,,0.51323,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60213,SRR12173056,SRX8687819,SRS6966483,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,93B,GSM4661919,,source name:PH6|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,93B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH6,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661919,GSM4661919: 93B; Danio rerio; RNA Seq,GSM4661919,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661919,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,93B_2.fq 93B_1.fq,fastq fastq,4896774400.0,48967744.0,GSM4661919 r1,0:100 1:100,A:1403923710;C:1011507726;G:1048273729;T:1433069235;N:0,100,100,,,1403923710,1011507726,1048273729,1433069235,0,SRX8687819,SRS6966483,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91124,,0.1598,,0.72247,,0.54532,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60214,SRR12173055,SRX8687818,SRS6966482,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,92B,GSM4661918,,source name:PH4|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:male,92B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH4,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:M,GSM4661918,GSM4661918: 92B; Danio rerio; RNA Seq,GSM4661918,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661918,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,92B_1.fq 92B_2.fq,fastq fastq,5153962600.0,51539626.0,GSM4661918 r1,0:100 1:100,A:1429538166;C:1118723084;G:1151444792;T:1454256558;N:0,100,100,,,1429538166,1118723084,1151444792,1454256558,0,SRX8687818,SRS6966482,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91817,,0.15904,,0.71088,,0.51009,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60215,SRR12173054,SRX8687817,SRS6966481,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,75B,GSM4661917,,source name:PH10|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,75B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH10,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661917,GSM4661917: 75B; Danio rerio; RNA Seq,GSM4661917,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661917,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,75B_1.fq 75B_2.fq,fastq fastq,4868261600.0,48682616.0,GSM4661917 r1,0:100 1:100,A:1376009816;C:1028298503;G:1057930129;T:1406023152;N:0,100,100,,,1376009816,1028298503,1057930129,1406023152,0,SRX8687817,SRS6966481,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.9126,,0.1697,,0.71638,,0.50591,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60216,SRR12173053,SRX8687816,SRS6966480,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,74B,GSM4661916,,source name:PH9|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,74B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH9,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661916,GSM4661916: 74B; Danio rerio; RNA Seq,GSM4661916,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661916,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,74B_1.fq 74B_2.fq,fastq fastq,5179173200.0,51791732.0,GSM4661916 r1,0:100 1:100,A:1449133916;C:1117631254;G:1139937410;T:1472470620;N:0,100,100,,,1449133916,1117631254,1139937410,1472470620,0,SRX8687816,SRS6966480,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91222,,0.16046,,0.71029,,0.50076,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60217,SRR12173052,SRX8687815,SRS6966479,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,72B,GSM4661915,,source name:PH2|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,72B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH2,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661915,GSM4661915: 72B; Danio rerio; RNA Seq,GSM4661915,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661915,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,72B_1.fq 72B_2.fq,fastq fastq,5878512600.0,58785126.0,GSM4661915 r1,0:100 1:100,A:1639773073;C:1271766251;G:1298391071;T:1668582205;N:0,100,100,,,1639773073,1271766251,1298391071,1668582205,0,SRX8687815,SRS6966479,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.91084,,0.16615,,0.70713,,0.5033,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60218,SRR12173051,SRX8687814,SRS6966478,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,71B,GSM4661914,,source name:PH1|tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:female,71B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,PH1,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F1|Sex:F,GSM4661914,GSM4661914: 71B; Danio rerio; RNA Seq,GSM4661914,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661914,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,71B_1.fq 71B_2.fq,fastq fastq,2921419400.0,29214194.0,GSM4661914 r1,0:100 1:100,A:838032642;C:606973028;G:618918524;T:857495206;N:0,100,100,,,838032642,606973028,618918524,857495206,0,SRX8687814,SRS6966478,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90765,,0.17712,,0.71015,,0.48691,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60219,SRR12173050,SRX8687813,SRS6966477,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,173B,GSM4661913,,source name:SCA10|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male,173B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA10,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M,GSM4661913,GSM4661913: 173B; Danio rerio; RNA Seq,GSM4661913,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661913,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB44-68_1.fq.gz V300016697_L3_DKRT190808OligoTB44-68_2.fq.gz,fastq fastq,4933950400.0,49339504.0,GSM4661913 r1,0:100 1:100,A:1477278267;C:971417805;G:982397108;T:1502857220;N:0,100,100,,,1477278267,971417805,982397108,1502857220,0,SRX8687813,SRS6966477,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90094,,0.26419,,0.73066,,0.51886,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60220,SRR12173049,SRX8687812,SRS6966476,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,172B,GSM4661912,,source name:SCA7|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male,172B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA7,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M,GSM4661912,GSM4661912: 172B; Danio rerio; RNA Seq,GSM4661912,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661912,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB43-67_1.fq.gz V300016697_L3_DKRT190808OligoTB43-67_2.fq.gz,fastq fastq,4916317800.0,49163178.0,GSM4661912 r1,0:100 1:100,A:1456100891;C:983643530;G:996293468;T:1480279911;N:0,100,100,,,1456100891,983643530,996293468,1480279911,0,SRX8687812,SRS6966476,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90484,,0.24497,,0.72563,,0.51605,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60221,SRR12173048,SRX8687811,SRS6966475,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,171B,GSM4661911,,source name:SCA5|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male,171B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA5,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M,GSM4661911,GSM4661911: 171B; Danio rerio; RNA Seq,GSM4661911,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661911,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB42-66_1.fq.gz V300016697_L3_DKRT190808OligoTB42-66_2.fq.gz,fastq fastq,4935261800.0,49352618.0,GSM4661911 r1,0:100 1:100,A:1445056643;C:1003559733;G:1015728708;T:1470916716;N:0,100,100,,,1445056643,1003559733,1015728708,1470916716,0,SRX8687811,SRS6966475,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90817,,0.23047,,0.72086,,0.5134,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60222,SRR12173047,SRX8687810,SRS6966474,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,170B,GSM4661910,,source name:SCA3|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:male,170B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA3,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:M,GSM4661910,GSM4661910: 170B; Danio rerio; RNA Seq,GSM4661910,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661910,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB41-65_1.fq.gz V300016697_L3_DKRT190808OligoTB41-65_2.fq.gz,fastq fastq,4925193600.0,49251936.0,GSM4661910 r1,0:100 1:100,A:1463488890;C:982336799;G:993110731;T:1486257180;N:0,100,100,,,1463488890,982336799,993110731,1486257180,0,SRX8687810,SRS6966474,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90727,,0.24322,,0.72659,,0.52026,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60223,SRR12173046,SRX8687809,SRS6966473,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,168B,GSM4661909,,source name:SCA9|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:female,168B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA9,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:F,GSM4661909,GSM4661909: 168B; Danio rerio; RNA Seq,GSM4661909,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661909,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB40-64_1.fq.gz V300016697_L3_DKRT190808OligoTB40-64_2.fq.gz,fastq fastq,4921204600.0,49212046.0,GSM4661909 r1,0:100 1:100,A:1472696868;C:970527278;G:980479163;T:1497501291;N:0,100,100,,,1472696868,970527278,980479163,1497501291,0,SRX8687809,SRS6966473,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.89853,,0.26909,,0.72934,,0.50679,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60224,SRR12173045,SRX8687808,SRS6966472,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,167B,GSM4661908,,source name:SCA8|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:female,167B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA8,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:F,GSM4661908,GSM4661908: 167B; Danio rerio; RNA Seq,GSM4661908,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661908,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB39-63_1.fq.gz V300016697_L3_DKRT190808OligoTB39-63_2.fq.gz,fastq fastq,4929648000.0,49296480.0,GSM4661908 r1,0:100 1:100,A:1444571687;C:1001131050;G:1014059660;T:1469885603;N:0,100,100,,,1444571687,1001131050,1014059660,1469885603,0,SRX8687808,SRS6966472,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.90469,,0.23511,,0.71644,,0.50939,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System 60225,SRR12173044,SRX8687807,SRS6966471,SRP270926,PRJNA644883,Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring post early life exposure to permethrin 10 microg/L,GSE154020,Transcriptome Analysis,In the present study zebrafish were exposed to permethrin during early life and F1 and F2 generations were bred unexposed. Permethrin exposed F0 fish showed a hypoactive phenotype at maturity whereas males from the F1 and F2 generations showed a decrease in anxiety like behavior. Thus we performed transcriptomic changes to identify underlying molecular mechanisms. They showed limited overlap between sex and generations. In F0 genes and pathways related to glutamatergic synapse activity Gene Ontology and Reactome databases were significantly enriched and may explain the behavioral effects. In F1 and F2 generations mechanisms are less clear as limited changes which could correlate with behavior were observed in the F1 generation. Overall design: RNA sequencing was performed on males and females from the F0 F1 and F2 generations 4 replicates treatment 4 replicates control for each sex and each generation,,pubmed:33752003,,166B,GSM4661907,,source name:SCA6|tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:female,166B,Base calling and prefiltering adaptor removal was performed by BGI STAR 2.7 for alignment of the reads to DanRer11 whole genome with default parameters Counts of reads per gene were obtained with HTSeq v0.11.2 gtf annotation file GRCz11.97 Use of DESeq2 v1.24.0 for differential gene expression analysis Genome build: DanRer11 Supplementary files format and content: csv file including raw counts obtained from htseq unnormalized.,SCA6,,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,,tissue:whole brain|age:adult|strain:AB line|generation:F2|Sex:F,GSM4661907,GSM4661907: 166B; Danio rerio; RNA Seq,GSM4661907,,1,Fish were euthanized brains were dissected and flash frozen in liquid nitrogen and RNA was extracted using TriPrep extraction kit Macherey Nagel. One microg of total RNA was sent to BGI Europe A/S for pair ended transcriptome sequencing on BGI Seq500 according to BGI standard protocol,GEO Accession:GSM4661907,RNA-Seq,TRANSCRIPTOMIC,cDNA,PAIRED,BGISEQ,BGISEQ-500,,SRP270926,,,V300016697_L3_DKRT190808OligoTB38-62_1.fq.gz V300016697_L3_DKRT190808OligoTB38-62_2.fq.gz,fastq fastq,4934480200.0,49344802.0,GSM4661907 r1,0:100 1:100,A:1465270023;C:983677716;G:995361912;T:1490170549;N:0,100,100,,,1465270023,983677716,995361912,1490170549,0,SRX8687807,SRS6966471,SRA1096323,GEO,"UMR MARBEC, INRAE",1,0.89941,,0.25615,,0.72127,,0.50512,,100,,B,,usable mapping rate,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,France,2020-07-08,Adult,Adult,Brain,Nervous System