rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
282,DRR179616,DRX170142,DRS185505,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 2,Fin xanthophore 03,SAMD00172019,,sample name:Zebrafish pigment cell 06|cell type:Xanthophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172019,DRX170142,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>232</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172019,,,,376558775.0,1624500.0,DRR179616,0:231.80,A:107837072;C:79508449;G:79372899;T:109840355;N:0,231,,,,107837072,79508449,79372899,109840355,0,DRX170142,DRS185505,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.86944,,0.10951,,0.90425,,0.59385,,311,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
283,DRR179615,DRX170141,DRS185504,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin xanthophore 02,SAMD00172018,,sample name:Zebrafish pigment cell 05|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172018,DRX170141,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>243</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172018,,,,515115515.0,2124170.0,DRR179615,0:242.50,A:138421982;C:119032803;G:119412227;T:138248503;N:0,242,,,,138421982,119032803,119412227,138248503,0,DRX170141,DRS185504,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.88998,,0.05858,,0.88051,,0.50917,,284,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
284,DRR179614,DRX170140,DRS185503,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin xanthophore 01,SAMD00172017,,sample name:Zebrafish pigment cell 04|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172017,DRX170140,Zebrafish fin xanthophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>247</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172017,,,,371242152.0,1504407.0,DRR179614,0:246.77,A:99341086;C:86126839;G:86264882;T:99509345;N:0,246,,,,99341086,86126839,86264882,99509345,0,DRX170140,DRS185503,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.88672,,0.06422,,0.85679,,0.5066,,56,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
285,DRR179613,DRX170139,DRS185502,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 2,Fin melanophore 03,SAMD00172016,,sample name:Zebrafish pigment cell 03|cell type:Melanophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172016,DRX170139,Zebrafish fin melanophore 03,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>248</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172016,,,,342802993.0,1585538.0,DRR179613,0:216.21,A:90833658;C:80789744;G:80463233;T:90716358;N:0,216,,,,90833658,80789744,80463233,90716358,0,DRX170139,DRS185502,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.8312,,0.03528,,0.88605,,0.47299,,285,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
286,DRR179612,DRX170138,DRS185501,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin melanophore 02,SAMD00172015,,sample name:Zebrafish pigment cell 02|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172015,DRX170138,Zebrafish fin melanophore 02,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>216</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172015,,,,538412675.0,2168231.0,DRR179612,0:248.32,A:147128403;C:121854818;G:121564109;T:147865345;N:0,248,,,,147128403,121854818,121564109,147865345,0,DRX170138,DRS185501,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.89106,,0.07081,,0.89286,,0.5935,,283,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
287,DRR179611,DRX170137,DRS185500,DRP007318,PRJDB8340,Gene expression analysis of zebrafish fin melanophores and xanthophores.,DRP007318,Other,Pigment cells  melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore  and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.,,,Biological replicate 1,Fin melanophore 01,SAMD00172014,,sample name:Zebrafish pigment cell 01|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin,,,,,,,,,Ion Torrent PGM sequencing of SAMD00172014,DRX170137,Zebrafish fin melanophore 01,1,1,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ION_TORRENT,Ion Torrent PGM,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>215</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,DRP007318,Ion Torrent PGM sequencing of SAMD00172014,,,,282446840.0,1311431.0,DRR179611,0:215.37,A:74927237;C:66575483;G:66161471;T:74782649;N:0,215,,,,74927237,66575483,66161471,74782649,0,DRX170137,DRS185500,DRA008445,"OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University","Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University",1,0.85938,,0.0335,,0.89248,,0.58813,,274,,B,,usable mapping rate,ion_torrent,ion_torrent,full_length,other,smarter,bulk,unknown,unknown,,Japan,2021-05-21,Adult,Adult,Fin,Surface Structure
33373,SRR30168925,SRX25635545,SRS22279934,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax Ti 3d3,Z Hi 3d3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 3|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z Hi 3d3,Z Hi 3d3,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_Hi_3d3_R2.fastq Z_Hi_3d3_R1.fastq,fastq fastq,6296371726.0,20848913.0,Z Hi 3d3 R1.fastq,0:151 1:151,A:1704155951;C:1439352121;G:1462544186;T:1690244568;N:74900,151,151,,,1704155951,1439352121,1462544186,1690244568,74900,SRX25635545,SRS22279934,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.9328,0.93327,0.07548,0.07488,0.71985,0.71928,0.5049,0.50889,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system
33374,SRR30168926,SRX25635544,SRS22279933,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax Ti 3d2,Z Hi 3d2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 2|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z Hi 3d2,Z Hi 3d2,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_Hi_3d2_R1.fastq Z_Hi_3d2_R2.fastq,fastq fastq,6530683862.0,21624781.0,Z Hi 3d2 R1.fastq,0:151 1:151,A:1754695891;C:1502355303;G:1526937743;T:1746614271;N:80654,151,151,,,1754695891,1502355303,1526937743,1746614271,80654,SRX25635544,SRS22279933,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.93139,0.93214,0.08116,0.08178,0.70981,0.70983,0.48395,0.48661,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system
33375,SRR30168927,SRX25635543,SRS22279932,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax Ti 3d1,Z Hi 3d1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 1|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z Hi 3d1,Z Hi 3d1,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_Hi_3d1_R1.fastq Z_Hi_3d1_R2.fastq,fastq fastq,6160626350.0,20399425.0,Z Hi 3d1 R1.fastq,0:151 1:151,A:1667594818;C:1407434381;G:1429290724;T:1656232741;N:73686,151,151,,,1667594818,1407434381,1429290724,1656232741,73686,SRX25635543,SRS22279932,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.9337,0.93249,0.08009,0.08009,0.71242,0.71338,0.47654,0.47528,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system
33376,SRR30168928,SRX25635542,SRS22279930,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax C 3d3,Z c 3d3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 3|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z c 3d3,Z c 3d3,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_C_3d3_R2.fastq Z_C_3d3_R1.fastq,fastq fastq,5810255010.0,19239255.0,Z C 3d3 R1.fastq,0:151 1:151,A:1564226440;C:1336263606;G:1355696622;T:1553998418;N:69924,151,151,,,1564226440,1336263606,1355696622,1553998418,69924,SRX25635542,SRS22279930,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.92958,0.92832,0.07821,0.07745,0.70463,0.70569,0.47036,0.47581,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system
33377,SRR30168929,SRX25635541,SRS22279931,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax C 3d2,Z c 3d2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 2|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z c 3d2,Z c 3d2,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_C_3d2_R2.fastq Z_C_3d2_R1.fastq,fastq fastq,6856714606.0,22704353.0,Z C 3d2 R1.fastq,0:151 1:151,A:1850156301;C:1573942247;G:1595025700;T:1837509085;N:81273,151,151,,,1850156301,1573942247,1595025700,1837509085,81273,SRX25635541,SRS22279931,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.92587,0.92539,0.08056,0.08087,0.70343,0.70423,0.48091,0.47768,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system
33378,SRR30168930,SRX25635540,SRS22279929,SRP524879,PRJNA1145574,RNA sequencing of tail fin of zebrafish,PRJNA1145574,Other,gene expression change post inhibition of HSP90,,,,Ax C 3d1,Z c 3d1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 1|BioSampleModel:Model organism or animal,,,,,,,,,tail fin regeneration of zebrafish,Z c 3d1,Z c 3d1,cDNA barcode,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP524879,,,Z_C_3d1_R1.fastq Z_C_3d1_R2.fastq,fastq fastq,5915874074.0,19588987.0,Z C 3d1 R1.fastq,0:151 1:151,A:1601403264;C:1350219159;G:1374928971;T:1589252208;N:70472,151,151,,,1601403264,1350219159,1374928971,1589252208,70472,SRX25635540,SRS22279929,SRA1942523,Ocean University of China|Department of marine biology,Ocean University of China,2,0.92552,0.92878,0.07906,0.07985,0.70264,0.70323,0.48016,0.48019,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-08-08,Adult,Adult,Multi-tissue,Multi-system
33916,SRR30920839,SRX26323786,SRS22850830,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iv 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF iv 1,PF iv 1,PF iv 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iv_1_1.fq.gz PF_iv_1_2.fq.gz,fastq fastq,7070670900.0,23568903.0,PF iv 1 1.fq.gz,0:150 1:150,A:1943964885;C:1626486936;G:1603332965;T:1896802175;N:83939,150,150,,,1943964885,1626486936,1603332965,1896802175,83939,SRX26323786,SRS22850830,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33917,SRR30920840,SRX26323785,SRS22850828,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iii 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF iii 3,PF iii 3,PF iii 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iii_3_1.fq.gz PF_iii_3_2.fq.gz,fastq fastq,6934323600.0,23114412.0,PF iii 3 1.fq.gz,0:150 1:150,A:1813397404;C:1659011482;G:1680744429;T:1781143700;N:26585,150,150,,,1813397404,1659011482,1680744429,1781143700,26585,SRX26323785,SRS22850828,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33918,SRR30920841,SRX26323784,SRS22850835,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iii 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF iii 2,PF iii 2,PF iii 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iii_2_1.fq.gz PF_iii_2_2.fq.gz,fastq fastq,7255113000.0,24183710.0,PF iii 2 1.fq.gz,0:150 1:150,A:1877711956;C:1751268862;G:1779105498;T:1846998314;N:28370,150,150,,,1877711956,1751268862,1779105498,1846998314,28370,SRX26323784,SRS22850835,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33919,SRR30920842,SRX26323783,SRS22850829,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iii 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF iii 1,PF iii 1,PF iii 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iii_1_1.fq.gz PF_iii_1_2.fq.gz,fastq fastq,7367112000.0,24557040.0,PF iii 1 1.fq.gz,0:150 1:150,A:1943591568;C:1745588879;G:1774109048;T:1903793252;N:29253,150,150,,,1943591568,1745588879,1774109048,1903793252,29253,SRX26323783,SRS22850829,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33920,SRR30920843,SRX26323782,SRS22850827,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF ii 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF ii 3,PF ii 3,PF ii 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_ii_3_1.fq.gz PF_ii_3_2.fq.gz,fastq fastq,7076391300.0,23587971.0,PF ii 3 1.fq.gz,0:150 1:150,A:1894076667;C:1654017021;G:1661713202;T:1866530077;N:54333,150,150,,,1894076667,1654017021,1661713202,1866530077,54333,SRX26323782,SRS22850827,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33921,SRR30920844,SRX26323781,SRS22850824,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF ii 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF ii 2,PF ii 2,PF ii 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_ii_2_1.fq.gz PF_ii_2_2.fq.gz,fastq fastq,7019128200.0,23397094.0,PF ii 2 1.fq.gz,0:150 1:150,A:1864708472;C:1652262592;G:1662746794;T:1839356863;N:53479,150,150,,,1864708472,1652262592,1662746794,1839356863,53479,SRX26323781,SRS22850824,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33922,SRR30920845,SRX26323780,SRS22850826,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF ii 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF ii 1,PF ii 1,PF ii 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_ii_1_1.fq.gz PF_ii_1_2.fq.gz,fastq fastq,8013867900.0,26712893.0,PF ii 1 1.fq.gz,0:150 1:150,A:2115645121;C:1898389790;G:1909480370;T:2090291064;N:61555,150,150,,,2115645121,1898389790,1909480370,2090291064,61555,SRX26323780,SRS22850826,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33923,SRR30920846,SRX26323779,SRS22850825,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF i 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF i 3,PF i 3,PF i 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_i_3_1.fq.gz PF_i_3_2.fq.gz,fastq fastq,8319390000.0,27731300.0,PF i 3 1.fq.gz,0:150 1:150,A:2161188519;C:1997121516;G:2035390212;T:2125657588;N:32165,150,150,,,2161188519,1997121516,2035390212,2125657588,32165,SRX26323779,SRS22850825,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33924,SRR30920847,SRX26323778,SRS22850823,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iv 3,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,PF iv 3,PF iv 3,PF iv 3,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iv_3_1.fq.gz PF_iv_3_2.fq.gz,fastq fastq,7173257700.0,23910859.0,PF iv 3 1.fq.gz,0:150 1:150,A:1875724697;C:1713434205;G:1745363776;T:1838706880;N:28142,150,150,,,1875724697,1713434205,1745363776,1838706880,28142,SRX26323778,SRS22850823,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33925,SRR30920848,SRX26323777,SRS22850821,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF iv 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF iv 2,PF iv 2,PF iv 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_iv_2_1.fq.gz PF_iv_2_2.fq.gz,fastq fastq,7161631500.0,23872105.0,PF iv 2 1.fq.gz,0:150 1:150,A:1890379638;C:1697508923;G:1718050265;T:1855664701;N:27973,150,150,,,1890379638,1697508923,1718050265,1855664701,27973,SRX26323777,SRS22850821,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33926,SRR30920849,SRX26323776,SRS22850822,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF i 2,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,PF i 2,PF i 2,PF i 2,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_i_2_1.fq.gz PF_i_2_2.fq.gz,fastq fastq,7036742700.0,23455809.0,PF i 2 1.fq.gz,0:150 1:150,A:1861224200;C:1662236616;G:1671149144;T:1842079812;N:52928,150,150,,,1861224200,1662236616,1671149144,1842079812,52928,SRX26323776,SRS22850822,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
33927,SRR30920850,SRX26323775,SRS22850820,SRP537366,PRJNA1169999,Danio rerio Raw sequence reads,PRJNA1169999,Other,Transcriptional analysis of zebrafish,,,,,PF i 1,,strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,PF i 1,PF i 1,PF i 1,the primary follicles of zebrafish,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP537366,,,PF_i_1_1.fq.gz PF_i_1_2.fq.gz,fastq fastq,6977957400.0,23259858.0,PF i 1 1.fq.gz,0:150 1:150,A:1821299728;C:1674791787;G:1691820873;T:1790017865;N:27147,150,150,,,1821299728,1674791787,1691820873,1790017865,27147,SRX26323775,SRS22850820,SRA1988616,Hunan Normal University|School of Life Sciences,Hunan Normal University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-09,Adult,Adult,Gonad,Reproductive System
34100,SRR31179089,SRX26561802,SRS23067260,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L21,L1EIC0700904 T L2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:9|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L21,L21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700904-T_L2.R1.raw.fastq.gz L1EIC0700904-T_L2.R2.raw.fastq.gz,fastq fastq,6755197306.0,22368203.0,L1EIC0700904 T L2.R1.raw.fastq.gz,0:151 1:151,A:1778527472;C:1586407415;G:1611223994;T:1770639781;N:8398644,151,151,,,1778527472,1586407415,1611223994,1770639781,8398644,SRX26561802,SRS23067260,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34101,SRR31179090,SRX26561801,SRS23067261,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L11,L1EIC0700903 T L1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:7|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L11,L11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700903-T_L1.R1.raw.fastq.gz L1EIC0700903-T_L1.R2.raw.fastq.gz,fastq fastq,7262619518.0,24048409.0,L1EIC0700903 T L1.R1.raw.fastq.gz,0:151 1:151,A:1897564712;C:1719515913;G:1744510723;T:1891980402;N:9047768,151,151,,,1897564712,1719515913,1744510723,1891980402,9047768,SRX26561801,SRS23067261,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34102,SRR31179091,SRX26561800,SRS23067257,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C31,L1EIC0700902 T C3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:5|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C31,C31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700902-T_C3.R1.raw.fastq.gz L1EIC0700902-T_C3.R2.raw.fastq.gz,fastq fastq,6986250560.0,23133280.0,L1EIC0700902 T C3.R1.raw.fastq.gz,0:151 1:151,A:1814714141;C:1667167814;G:1686637674;T:1809014055;N:8716876,151,151,,,1814714141,1667167814,1686637674,1809014055,8716876,SRX26561800,SRS23067257,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34103,SRR31179092,SRX26561799,SRS23067259,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C21,L1EIC0700901 T C2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C21,C21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700901-T_C2.R1.raw.fastq.gz L1EIC0700901-T_C2.R2.raw.fastq.gz,fastq fastq,7084353146.0,23458123.0,L1EIC0700901 T C2.R1.raw.fastq.gz,0:151 1:151,A:1860686893;C:1670094870;G:1691858523;T:1852823738;N:8889122,151,151,,,1860686893,1670094870,1691858523,1852823738,8889122,SRX26561799,SRS23067259,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34104,SRR31179093,SRX26561798,SRS23067255,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S31,L1EIC0700908 T S3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:17|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S31,S31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700908-T_S3.R1.raw.fastq.gz L1EIC0700908-T_S3.R2.raw.fastq.gz,fastq fastq,6992611888.0,23154344.0,L1EIC0700908 T S3.R1.raw.fastq.gz,0:151 1:151,A:1891265867;C:1594515809;G:1615494569;T:1882648469;N:8687174,151,151,,,1891265867,1594515809,1615494569,1882648469,8687174,SRX26561798,SRS23067255,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34105,SRR31179094,SRX26561797,SRS23067258,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S21,L1EIC0700907 T S2.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:15|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S21,S21,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700907-T_S2.R1.raw.fastq.gz L1EIC0700907-T_S2.R2.raw.fastq.gz,fastq fastq,6223201958.0,20606629.0,L1EIC0700907 T S2.R1.raw.fastq.gz,0:151 1:151,A:1635455481;C:1467707544;G:1484789988;T:1627505187;N:7743758,151,151,,,1635455481,1467707544,1484789988,1627505187,7743758,SRX26561797,SRS23067258,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34106,SRR31179095,SRX26561796,SRS23067256,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,S11,L1EIC0700906 T S1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:13|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,S11,S11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700906-T_S1.R1.raw.fastq.gz L1EIC0700906-T_S1.R2.raw.fastq.gz,fastq fastq,6882679660.0,22790330.0,L1EIC0700906 T S1.R1.raw.fastq.gz,0:151 1:151,A:1805328115;C:1625761692;G:1646060059;T:1796837143;N:8692651,151,151,,,1805328115,1625761692,1646060059,1796837143,8692651,SRX26561796,SRS23067256,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34107,SRR31179096,SRX26561795,SRS23067254,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,L31,L1EIC0700905 T L3.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:11|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,L31,L31,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700905-T_L3.R1.raw.fastq.gz L1EIC0700905-T_L3.R2.raw.fastq.gz,fastq fastq,6901039146.0,22851123.0,L1EIC0700905 T L3.R1.raw.fastq.gz,0:151 1:151,A:1796093025;C:1641065561;G:1664159837;T:1791078184;N:8642539,151,151,,,1796093025,1641065561,1664159837,1791078184,8642539,SRX26561795,SRS23067254,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34108,SRR31179097,SRX26561794,SRS23067253,SRP542312,PRJNA1180208,RNA Sequencing of NPs in zebrafish brain,PRJNA1180208,Other,,,,,C11,L1EIC0700900 T C1.R1,,strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq of zebrafish brain,C11,C11,Adult zebrafish brain,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 3000,,SRP542312,,,L1EIC0700900-T_C1.R1.raw.fastq.gz L1EIC0700900-T_C1.R2.raw.fastq.gz,fastq fastq,10565913034.0,34986467.0,L1EIC0700900 T C1.R1.raw.fastq.gz,0:151 1:151,A:2737543425;C:2523674862;G:2563177427;T:2728317948;N:13199372,151,151,,,2737543425,2523674862,2563177427,2728317948,13199372,SRX26561794,SRS23067253,SRA2001903,City University of Hong Kong|School of Energy and Environmental,City University of Hong Kong,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2024-10-31,Adult,Adult,Brain,Nervous System
34409,SRR31747815,SRX27109876,SRS23567839,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB2,,strain:not collected|isolate:liver AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172628,LRA172628,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB2_R1.fastq.gz AFB2_R2.fastq.gz,fastq fastq,7190069454.0,23808177.0,AFB2 R1.fastq.gz,0:151 1:151,A:2078244342;C:1510893083;G:1547178609;T:2053626767;N:126653,151,151,,,2078244342,1510893083,1547178609,2053626767,126653,SRX27109876,SRS23567839,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34410,SRR31747816,SRX27109875,SRS23567837,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB1,,strain:not collected|isolate:liver AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172627,LRA172627,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB1_R1.fastq.gz AFB1_R2.fastq.gz,fastq fastq,7463779000.0,24714500.0,AFB1 R1.fastq.gz,0:151 1:151,A:2176506326;C:1554667596;G:1582400568;T:2150036004;N:168506,151,151,,,2176506326,1554667596,1582400568,2150036004,168506,SRX27109875,SRS23567837,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34411,SRR31747817,SRX27109874,SRS23567838,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO4,,strain:not collected|isolate:liver EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172635,LRA172635,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO4_R1.fastq.gz EPO4_R2.fastq.gz,fastq fastq,8273309328.0,27395064.0,EPO4 R1.fastq.gz,0:151 1:151,A:2390853071;C:1742121394;G:1771230346;T:2368915323;N:189194,151,151,,,2390853071,1742121394,1771230346,2368915323,189194,SRX27109874,SRS23567838,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34412,SRR31747818,SRX27109873,SRS23567836,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO3,,strain:not collected|isolate:liver EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172634,LRA172634,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO3_R1.fastq.gz EPO3_R2.fastq.gz,fastq fastq,7097420082.0,23501391.0,EPO3 R1.fastq.gz,0:151 1:151,A:2092952383;C:1451623472;G:1477150205;T:2075535584;N:158438,151,151,,,2092952383,1451623472,1477150205,2075535584,158438,SRX27109873,SRS23567836,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34413,SRR31747819,SRX27109872,SRS23567834,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO2,,strain:not collected|isolate:liver EPO2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172633,LRA172633,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO2_R1.fastq.gz EPO2_R2.fastq.gz,fastq fastq,7332924514.0,24281207.0,EPO2 R1.fastq.gz,0:151 1:151,A:2162671338;C:1496551996;G:1515648771;T:2157891639;N:160770,151,151,,,2162671338,1496551996,1515648771,2157891639,160770,SRX27109872,SRS23567834,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34414,SRR31747820,SRX27109871,SRS23567835,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,EPO1,,strain:not collected|isolate:liver EPO1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172632,LRA172632,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,EPO1_R1.fastq.gz EPO1_R2.fastq.gz,fastq fastq,8287626544.0,27442472.0,EPO1 R1.fastq.gz,0:151 1:151,A:2435156330;C:1694808350;G:1717315788;T:2440143946;N:202130,151,151,,,2435156330,1694808350,1717315788,2440143946,202130,SRX27109871,SRS23567835,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34415,SRR31747821,SRX27109870,SRS23567833,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK5,,strain:not collected|isolate:liver CK4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172626,LRA172626,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK5_R1.fastq.gz CK5_R2.fastq.gz,fastq fastq,7157140280.0,23699140.0,CK5 R1.fastq.gz,0:151 1:151,A:2092635667;C:1492801085;G:1512780390;T:2058759456;N:163682,151,151,,,2092635667,1492801085,1512780390,2058759456,163682,SRX27109870,SRS23567833,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34416,SRR31747822,SRX27109869,SRS23567832,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK4,,strain:not collected|isolate:liver CK3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172625,LRA172625,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK4_R1.fastq.gz CK4_R2.fastq.gz,fastq fastq,5903236582.0,19547141.0,CK4 R1.fastq.gz,0:151 1:151,A:1649245280;C:1297061493;G:1327173777;T:1629624071;N:131961,151,151,,,1649245280,1297061493,1327173777,1629624071,131961,SRX27109869,SRS23567832,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34417,SRR31747823,SRX27109868,SRS23567831,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM5,,strain:not collected|isolate:liver COM4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172641,LRA172641,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM5_R1.fastq.gz COM5_R2.fastq.gz,fastq fastq,7598066924.0,25159162.0,COM5 R1.fastq.gz,0:151 1:151,A:2223131767;C:1578956803;G:1603115446;T:2192694602;N:168306,151,151,,,2223131767,1578956803,1603115446,2192694602,168306,SRX27109868,SRS23567831,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34418,SRR31747824,SRX27109867,SRS23567830,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM4,,strain:not collected|isolate:liver COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172640,LRA172640,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM4_R1.fastq.gz COM4_R2.fastq.gz,fastq fastq,7633749130.0,25277315.0,COM4 R1.fastq.gz,0:151 1:151,A:2223410712;C:1603699864;G:1630586500;T:2175879626;N:172428,151,151,,,2223410712,1603699864,1630586500,2175879626,172428,SRX27109867,SRS23567830,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34419,SRR31747825,SRX27109866,SRS23567829,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM3,,strain:not collected|isolate:liver COM2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172639,LRA172639,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM3_R1.fastq.gz COM3_R2.fastq.gz,fastq fastq,7474959946.0,24751523.0,COM3 R1.fastq.gz,0:151 1:151,A:2145268206;C:1597121014;G:1632808908;T:2099584265;N:177553,151,151,,,2145268206,1597121014,1632808908,2099584265,177553,SRX27109866,SRS23567829,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34420,SRR31747826,SRX27109865,SRS23567827,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,COM2,,strain:not collected|isolate:liver COM1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172638,LRA172638,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,COM2_R1.fastq.gz COM2_R2.fastq.gz,fastq fastq,8791460090.0,29110795.0,COM2 R1.fastq.gz,0:151 1:151,A:2541630685;C:1869577126;G:1894336180;T:2485706665;N:209434,151,151,,,2541630685,1869577126,1894336180,2485706665,209434,SRX27109865,SRS23567827,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34421,SRR31747827,SRX27109864,SRS23567828,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB4,,strain:not collected|isolate:liver AFB4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172630,LRA172630,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB4_R1.fastq.gz AFB4_R2.fastq.gz,fastq fastq,7267902102.0,24065901.0,AFB4 R1.fastq.gz,0:151 1:151,A:2123758982;C:1506909715;G:1535054542;T:2102016033;N:162830,151,151,,,2123758982,1506909715,1535054542,2102016033,162830,SRX27109864,SRS23567828,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34422,SRR31747828,SRX27109863,SRS23567826,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,AFB3,,strain:not collected|isolate:liver AFB3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172629,LRA172629,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,AFB3_R1.fastq.gz AFB3_R2.fastq.gz,fastq fastq,6300108070.0,20861285.0,AFB3 R1.fastq.gz,0:151 1:151,A:1796927680;C:1350016175;G:1379242261;T:1773425050;N:496904,151,151,,,1796927680,1350016175,1379242261,1773425050,496904,SRX27109863,SRS23567826,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34423,SRR31747829,SRX27109862,SRS23567825,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK2,,strain:not collected|isolate:liver CK2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172623,LRA172623,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK2_R1.fastq.gz CK2_R2.fastq.gz,fastq fastq,6706705770.0,22207635.0,CK2 R1.fastq.gz,0:151 1:151,A:1918005955;C:1429871875;G:1469836872;T:1888840563;N:150505,151,151,,,1918005955,1429871875,1469836872,1888840563,150505,SRX27109862,SRS23567825,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34424,SRR31747830,SRX27109861,SRS23567824,SRP552011,PRJNA1199330,Transcriptomic analysis of zebrafish liver,PRJNA1199330,Other,The liver of adult female zebrafish was analyzed.Subsequently  RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.,,,,,CK1,,strain:not collected|isolate:liver CK1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172622,LRA172622,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552011,,,CK1_R1.fastq.gz CK1_R2.fastq.gz,fastq fastq,6319435768.0,20925284.0,CK1 R1.fastq.gz,0:151 1:151,A:1793805737;C:1361852588;G:1396171190;T:1767105304;N:500949,151,151,,,1793805737,1361852588,1396171190,1767105304,500949,SRX27109861,SRS23567824,SRA2036115,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Liver,Liver and Biliary System
34425,SRR31754963,SRX27116846,SRS23574567,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary AFB2,,strain:not collected|isolate:ovary AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172648,LRA172648,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,AFB2_R2.fastq.gz AFB2_R1.fastq.gz,fastq fastq,8264268656.0,27365128.0,AFB2 R1.fastq.gz,0:151 1:151,A:2181967333;C:1933268479;G:1966876338;T:2182007880;N:148626,151,151,,,2181967333,1933268479,1966876338,2182007880,148626,SRX27116846,SRS23574567,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34426,SRR31754964,SRX27116845,SRS23574566,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary AFB1,,strain:not collected|isolate:ovary AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172647,LRA172647,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,AFB1_R1.fastq.gz AFB1_R2.fastq.gz,fastq fastq,8208094240.0,27179120.0,AFB1 R1.fastq.gz,0:151 1:151,A:2198424448;C:1899278946;G:1926174417;T:2184068899;N:147530,151,151,,,2198424448,1899278946,1926174417,2184068899,147530,SRX27116845,SRS23574566,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34427,SRR31754965,SRX27116844,SRS23574565,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary EPO4,,strain:not collected|isolate:ovary EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172655,LRA172655,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,EPO4_R1.fastq.gz EPO4_R2.fastq.gz,fastq fastq,6421073868.0,21261834.0,EPO4 R1.fastq.gz,0:151 1:151,A:1714628675;C:1485463411;G:1507815048;T:1712492241;N:674493,151,151,,,1714628675,1485463411,1507815048,1712492241,674493,SRX27116844,SRS23574565,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34428,SRR31754966,SRX27116843,SRS23574564,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary EPO3,,strain:not collected|isolate:ovary EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172654,LRA172654,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,EPO3_R1.fastq.gz EPO3_R2.fastq.gz,fastq fastq,12384393350.0,41007925.0,EPO3 R1.fastq.gz,0:151 1:151,A:3299390090;C:2870219776;G:2921073783;T:3292432295;N:1277406,151,151,,,3299390090,2870219776,2921073783,3292432295,1277406,SRX27116843,SRS23574564,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34429,SRR31754967,SRX27116842,SRS23574563,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary EPO2,,strain:not collected|isolate:ovary EPO2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172653,LRA172653,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,EPO2_R1.fastq.gz EPO2_R2.fastq.gz,fastq fastq,7227706204.0,23932802.0,EPO2 R1.fastq.gz,0:151 1:151,A:1914315748;C:1683061506;G:1712969230;T:1916781383;N:578337,151,151,,,1914315748,1683061506,1712969230,1916781383,578337,SRX27116842,SRS23574563,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34430,SRR31754968,SRX27116841,SRS23574562,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary EPO1,,strain:not collected|isolate:ovary EPO1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172652,LRA172652,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,EPO1_R1.fastq.gz EPO1_R2.fastq.gz,fastq fastq,7074519422.0,23425561.0,EPO1 R1.fastq.gz,0:151 1:151,A:1851567042;C:1663164001;G:1696118474;T:1863062969;N:606936,151,151,,,1851567042,1663164001,1696118474,1863062969,606936,SRX27116841,SRS23574562,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34431,SRR31754969,SRX27116840,SRS23574561,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary CK5,,strain:not collected|isolate:ovary CK4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172646,LRA172646,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,CK5_R1.fastq.gz CK5_R2.fastq.gz,fastq fastq,7906135010.0,26179255.0,CK5 R1.fastq.gz,0:151 1:151,A:2103989212;C:1837685916;G:1866984480;T:2097334455;N:140947,151,151,,,2103989212,1837685916,1866984480,2097334455,140947,SRX27116840,SRS23574561,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34432,SRR31754970,SRX27116839,SRS23574560,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary CK4,,strain:not collected|isolate:ovary CK3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172645,LRA172645,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,CK4_R1.fastq.gz CK4_R2.fastq.gz,fastq fastq,8147481934.0,26978417.0,CK4 R1.fastq.gz,0:151 1:151,A:2155683788;C:1900855108;G:1935489119;T:2155309457;N:144462,151,151,,,2155683788,1900855108,1935489119,2155309457,144462,SRX27116839,SRS23574560,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34433,SRR31754971,SRX27116838,SRS23574559,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary COM5,,strain:not collected|isolate:ovary COM4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172661,LRA172661,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,COM5_R1.fastq.gz COM5_R2.fastq.gz,fastq fastq,6513305272.0,21567236.0,COM5 R1.fastq.gz,0:151 1:151,A:1761626217;C:1492342436;G:1510749983;T:1747915094;N:671542,151,151,,,1761626217,1492342436,1510749983,1747915094,671542,SRX27116838,SRS23574559,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34434,SRR31754972,SRX27116837,SRS23574558,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary COM4,,strain:not collected|isolate:ovary COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172660,LRA172660,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,COM4_R1.fastq.gz COM4_R2.fastq.gz,fastq fastq,10523636054.0,34846477.0,COM4 R1.fastq.gz,0:151 1:151,A:2816366030;C:2434669480;G:2460731324;T:2810787243;N:1081977,151,151,,,2816366030,2434669480,2460731324,2810787243,1081977,SRX27116837,SRS23574558,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34435,SRR31754973,SRX27116836,SRS23574557,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary COM3,,strain:not collected|isolate:ovary COM2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172659,LRA172659,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,COM3_R1.fastq.gz COM3_R2.fastq.gz,fastq fastq,5957202170.0,19725835.0,COM3 R1.fastq.gz,0:151 1:151,A:1578192296;C:1388274373;G:1405276551;T:1584848422;N:610528,151,151,,,1578192296,1388274373,1405276551,1584848422,610528,SRX27116836,SRS23574557,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-17,Adult,Adult,Gonad,Reproductive System
34436,SRR31754974,SRX27116835,SRS23574556,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary COM1,,strain:not collected|isolate:ovary COM1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172657,LRA172657,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,COM1_R1.fastq.gz COM1_R2.fastq.gz,fastq fastq,7215727676.0,23893138.0,COM1 R1.fastq.gz,0:151 1:151,A:1914653765;C:1678769921;G:1704180177;T:1917546023;N:577790,151,151,,,1914653765,1678769921,1704180177,1917546023,577790,SRX27116835,SRS23574556,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34437,SRR31754975,SRX27116834,SRS23574555,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary AFB4,,strain:not collected|isolate:ovary AFB4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172650,LRA172650,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,AFB4_R1.fastq.gz AFB4_R2.fastq.gz,fastq fastq,6275308434.0,20779167.0,AFB4 R1.fastq.gz,0:151 1:151,A:1653186447;C:1467741662;G:1493041609;T:1660678204;N:660512,151,151,,,1653186447,1467741662,1493041609,1660678204,660512,SRX27116834,SRS23574555,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34438,SRR31754976,SRX27116833,SRS23574554,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary AFB3,,strain:not collected|isolate:ovary AFB3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172649,LRA172649,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,AFB3_R1.fastq.gz AFB3_R2.fastq.gz,fastq fastq,6935349970.0,22964735.0,AFB3 R1.fastq.gz,0:151 1:151,A:1846423278;C:1610631481;G:1638136488;T:1840027935;N:130788,151,151,,,1846423278,1610631481,1638136488,1840027935,130788,SRX27116833,SRS23574554,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34439,SRR31754977,SRX27116832,SRS23574553,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary CK3,,strain:not collected|isolate:ovary CK2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172644,LRA172644,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,CK3_R1.fastq.gz CK3_R2.fastq.gz,fastq fastq,9516414714.0,31511307.0,CK3 R1.fastq.gz,0:151 1:151,A:2552809373;C:2199179689;G:2229773357;T:2534472563;N:179732,151,151,,,2552809373,2199179689,2229773357,2534472563,179732,SRX27116832,SRS23574553,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
34440,SRR31754978,SRX27116831,SRS23574552,SRP552202,PRJNA1199694,Zebrafish ovarian RNA seq,PRJNA1199694,Other,Adult female zebrafish ovaries were taken for subsequent analyses.In this study  we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.,,,,,ovary CK2,,strain:not collected|isolate:ovary CK1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,transcriptomic sequencing,LRA172643,LRA172643,The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP552202,,,CK2_R1.fastq.gz CK2_R2.fastq.gz,fastq fastq,5845696220.0,19356610.0,CK2 R1.fastq.gz,0:151 1:151,A:1536028365;C:1371120321;G:1397988722;T:1540426903;N:131909,151,151,,,1536028365,1371120321,1397988722,1540426903,131909,SRX27116831,SRS23574552,SRA2036776,shandong university|School of Public Health,shandong university,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,poly_a,unknown,bulk,unknown,unknown,,China,2024-12-18,Adult,Adult,Gonad,Reproductive System
38289,SRR1731761,SRX828260,SRS807370,SRP051449,PRJNA266270,Danio rerio Transcriptome or Gene expression,PRJNA266270,Other,To identify molecular signals that initiate liver regeneration post 1/3 PH,,,,,sham operated liver transcriptome post 1/3 PH,,breed:AB line|cultivar:AB line|strain:AB line|age:10 month|sex:female|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,sham operated liver transcriptome post 1/3 PH,sham operated,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP051449,,,sham-operated_R1.fastq.gz sham-operated_R2.fastq.gz,fastq fastq,2339904960.0,16249340.0,sham operated,0:72 1:72,A:639730953;C:549099184;G:603489762;T:545135156;N:2449905,72,72,,,639730953,549099184,603489762,545135156,2449905,SRX828260,SRS807370,SRA223828,"Institute of Hydrobiology, Chinese Academy of Scie|The Key Laboratory of Aquatic Biodiversity and Con",Chinese Academy of Sciences,2,0.9353,0.91074,0.02617,0.0253,0.86334,0.86387,0.35902,0.36066,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2016-02-05,Adult,Adult,Liver,Liver and Biliary System
38368,SRR1794626,SRX869998,SRS840790,SRP053395,PRJNA275005,Danio rerio Transcriptome or Gene expression,PRJNA275005,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH,,,24h liver,,24h,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h,seq3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053395,,,24h_run1_R2.fastq.gz 24h_run1_R1.fastq.gz,fastq fastq,2289928608.0,15902282.0,24h run1,0:72 1:72,A:626915024;C:536371415;G:589478213;T:534770153;N:2393803,72,72,,,626915024,536371415,589478213,534770153,2393803,SRX869998,SRS840790,SRA237004,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92769,0.90986,0.02558,0.02455,0.8493,0.84829,0.43228,0.43547,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-04-27,Adult,Adult,Liver,Liver and Biliary System
38369,SRR1794625,SRX869996,SRS840789,SRP053395,PRJNA275005,Danio rerio Transcriptome or Gene expression,PRJNA275005,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH,,,6h liver,,6h,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h,seq2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053395,,,,,2014108128.0,13986862.0,6h run1,0:72 1:72,A:542840697;C:473739345;G:521450086;T:473979205;N:2098795,72,72,,,542840697,473739345,521450086,473979205,2098795,SRX869996,SRS840789,SRA237004,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92694,0.90124,0.02907,0.0277,0.85178,0.85044,0.41862,0.40751,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38370,SRR1794624,SRX869994,SRS840787,SRP053395,PRJNA275005,Danio rerio Transcriptome or Gene expression,PRJNA275005,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH,,,sham liver,,sham,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham,seq1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053395,,,sham_run1_R2.fastq.gz sham_run1_R1.fastq.gz,fastq fastq,2339904960.0,16249340.0,sham run1,0:72 1:72,A:639730953;C:549099184;G:603489762;T:545135156;N:2449905,72,72,,,639730953,549099184,603489762,545135156,2449905,SRX869994,SRS840787,SRA237004,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9353,0.91073,0.02617,0.02532,0.8635,0.86375,0.35879,0.36066,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-09-01,Adult,Adult,Liver,Liver and Biliary System
38371,SRR1797772,SRX872343,SRS842660,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,168h liver,,168h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 168h3,168h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,168h3_R2.fastq.gz 168h3_R1.fastq.gz,fastq fastq,1829810880.0,12707020.0,168h3 run1,0:72 1:72,A:507414236;C:419304531;G:483140650;T:415843108;N:4108355,72,72,,,507414236,419304531,483140650,415843108,4108355,SRX872343,SRS842660,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93139,0.91693,0.02938,0.02891,0.85786,0.85896,0.39495,0.39212,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38372,SRR1797771,SRX872342,SRS842658,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,168h liver,,168h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 168h2,168h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,168h2_R2.fastq.gz 168h2_R1.fastq.gz,fastq fastq,1372976928.0,9534562.0,168h2 run1,0:72 1:72,A:387077556;C:311282950;G:355929958;T:317312161;N:1374303,72,72,,,387077556,311282950,355929958,317312161,1374303,SRX872342,SRS842658,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92667,0.9069,0.03341,0.03285,0.85498,0.85492,0.4097,0.41426,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38373,SRR1797770,SRX872341,SRS842657,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,168h liver,,168h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 168h1,168h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,,,2340104400.0,16250725.0,168h1 run1,0:72 1:72,A:667910990;C:526343343;G:603352668;T:540093539;N:2403860,72,72,,,667910990,526343343,603352668,540093539,2403860,SRX872341,SRS842657,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92746,0.90675,0.03592,0.03513,0.85476,0.85439,0.42337,0.42165,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38374,SRR1797769,SRX872340,SRS842656,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,120h liver,,120h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 120h3,120h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,120h3_R2.fastq.gz 120h3_R1.fastq.gz,fastq fastq,2124608256.0,14754224.0,120h3 run1,0:72 1:72,A:589644602;C:493725581;G:545952985;T:492854671;N:2430417,72,72,,,589644602,493725581,545952985,492854671,2430417,SRX872340,SRS842656,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.91869,0.89606,0.03516,0.03395,0.81251,0.81355,0.48462,0.48678,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38375,SRR1797766,SRX872339,SRS842654,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,120h liver,,120h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 120h2,120h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,120h2_R2.fastq.gz 120h2_R1.fastq.gz,fastq fastq,3623274144.0,25161626.0,120h2 run1,0:72 1:72,A:989104008;C:844487837;G:939298291;T:842275169;N:8108839,72,72,,,989104008,844487837,939298291,842275169,8108839,SRX872339,SRS842654,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92813,0.91285,0.03423,0.03358,0.8229,0.82465,0.47773,0.46762,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-12,Adult,Adult,Liver,Liver and Biliary System
38376,SRR1797767,SRX872338,SRS842655,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,120h liver,,120h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 120h1,120h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,120h1_R1.fastq.gz 120h1_R2.fastq.gz,fastq fastq,2166956496.0,15048309.0,120h1 run1,0:72 1:72,A:598794680;C:504653997;G:556024260;T:505305435;N:2178124,72,72,,,598794680,504653997,556024260,505305435,2178124,SRX872338,SRS842655,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92625,0.89458,0.03686,0.03577,0.83313,0.83319,0.3839,0.38104,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38377,SRR1797747,SRX872337,SRS842650,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,72h liver,,72h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 72h3,72h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,72h3_R2.fastq.gz 72h3_R1.fastq.gz,fastq fastq,2933514432.0,20371628.0,72h3 run1,0:72 1:72,A:797742153;C:682061705;G:766687384;T:683472770;N:3550420,72,72,,,797742153,682061705,766687384,683472770,3550420,SRX872337,SRS842650,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92802,0.91291,0.04028,0.03941,0.80823,0.8058,0.38547,0.38408,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38378,SRR1797748,SRX872335,SRS842652,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,72h liver,,72h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 72h2,72h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,72h2_R1.fastq.gz 72h2_R2.fastq.gz,fastq fastq,2557417104.0,17759841.0,72h2 run1,0:72 1:72,A:696915838;C:596106147;G:665835965;T:595973685;N:2585469,72,72,,,696915838,596106147,665835965,595973685,2585469,SRX872335,SRS842652,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93065,0.91586,0.03416,0.03379,0.8141,0.81499,0.42586,0.43195,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38379,SRR1797757,SRX872334,SRS842653,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,72h liver,,72h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 72h1,72h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,72h1_R2.fastq.gz 72h1_R1.fastq.gz,fastq fastq,1736716752.0,12060533.0,72h1 run1,0:72 1:72,A:475022900;C:405075078;G:460472558;T:394162576;N:1983640,72,72,,,475022900,405075078,460472558,394162576,1983640,SRX872334,SRS842653,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92183,0.90613,0.0358,0.03522,0.8115,0.81101,0.42319,0.42579,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38380,SRR1797745,SRX872333,SRS842648,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,24h liver,,24h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h3,24h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,,,1569651120.0,10900355.0,24h3 run1,0:72 1:72,A:423126744;C:367185056;G:396200408;T:381254240;N:1884672,72,72,,,423126744,367185056,396200408,381254240,1884672,SRX872333,SRS842648,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93264,0.91619,0.03833,0.03737,0.81688,0.81572,0.43721,0.43409,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38381,SRR1797746,SRX872331,SRS842649,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,24h liver,,24h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h2,24h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,24h2_R2.fastq.gz 24h2_R1.fastq.gz,fastq fastq,1422217008.0,9876507.0,24h2 run1,0:72 1:72,A:390236570;C:330456473;G:374590722;T:323786549;N:3146694,72,72,,,390236570,330456473,374590722,323786549,3146694,SRX872331,SRS842649,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.92821,0.91652,0.03889,0.03857,0.80967,0.81081,0.46985,0.47021,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38382,SRR1797739,SRX872330,SRS842642,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,24h liver,,24h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 24h1,24h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,24h1_R2.fastq.gz 24h1_R1.fastq.gz,fastq fastq,2626902432.0,18242378.0,24h1 run1,0:72 1:72,A:714587119;C:615398392;G:680070460;T:614156384;N:2690077,72,72,,,714587119,615398392,680070460,614156384,2690077,SRX872330,SRS842642,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.9304,0.91251,0.03891,0.03782,0.81544,0.81497,0.44392,0.44136,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38383,SRR1797742,SRX872329,SRS842643,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,6h liver,,6h3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h3,6h3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,6h3_R2.fastq.gz 6h3_R1.fastq.gz,fastq fastq,1938177648.0,13459567.0,6h3 run1,0:72 1:72,A:523126356;C:454912954;G:495840791;T:462357650;N:1939897,72,72,,,523126356,454912954,495840791,462357650,1939897,SRX872329,SRS842643,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93257,0.90684,0.03621,0.03457,0.83869,0.83863,0.33982,0.34227,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38384,SRR1797743,SRX872328,SRS842644,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,6h liver,,6h2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h2,6h2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,6h2_R2.fastq.gz 6h2_R1.fastq.gz,fastq fastq,2319432192.0,16107168.0,6h2 run1,0:72 1:72,A:625884355;C:540703450;G:592119356;T:557909621;N:2815410,72,72,,,625884355,540703450,592119356,557909621,2815410,SRX872328,SRS842644,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93408,0.91082,0.0354,0.03434,0.83796,0.83749,0.31743,0.30223,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38385,SRR1797744,SRX872326,SRS842646,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,6h liver,,6h1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of 6h1,6h1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,6h1_R1.fastq.gz 6h1_R2.fastq.gz,fastq fastq,1185504192.0,8232668.0,6h1 run1,0:72 1:72,A:323711674;C:275906178;G:301056404;T:283638538;N:1191398,72,72,,,323711674,275906178,301056404,283638538,1191398,SRX872326,SRS842646,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.935,0.90283,0.03624,0.03492,0.85957,0.86011,0.3455,0.33748,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38386,SRR1797731,SRX872325,SRS842639,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,sham liver,,sham3,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h3|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham3,sham3,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,sham3_R1.fastq.gz sham3_R2.fastq.gz,fastq fastq,1303090560.0,9049240.0,sham3,0:72 1:72,A:359825691;C:304363785;G:341568854;T:296025320;N:1306910,72,72,,,359825691,304363785,341568854,296025320,1306910,SRX872325,SRS842639,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93381,0.90458,0.02771,0.02603,0.87411,0.87361,0.29605,0.29329,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
38387,SRR1797734,SRX872324,SRS842640,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,sham liver,,sham2,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h2|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham2,sham2,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,sham2_R2.fastq.gz sham2_R1.fastq.gz,fastq fastq,1191890880.0,8277020.0,sham2,0:72 1:72,A:326599941;C:278538295;G:311022201;T:274492630;N:1237813,72,72,,,326599941,278538295,311022201,274492630,1237813,SRX872324,SRS842640,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93879,0.91451,0.02936,0.02817,0.88333,0.88357,0.27449,0.27692,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-02-11,Adult,Adult,Liver,Liver and Biliary System
38388,SRR1797733,SRX872323,SRS842641,SRP053641,PRJNA275178,Danio rerio Transcriptome or Gene expression,PRJNA275178,Other,To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH,,,sham liver,,sham1,,strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h1|BioSampleModel:Model organism or animal,,,,,,,,,dataset of sham1,sham1,1,1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP053641,,,sham1_R1.fastq.gz sham1_R2.fastq.gz,fastq fastq,1459401408.0,10134732.0,sham1,0:72 1:72,A:400303022;C:340413227;G:380056042;T:336967745;N:1661372,72,72,,,400303022,340413227,380056042,336967745,1661372,SRX872323,SRS842641,SRA237656,"Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group","Institute of Hydrobiology, Chinese Academy of Sciences",2,0.93216,0.90538,0.03151,0.03038,0.88781,0.88787,0.28115,0.27603,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,other,unknown,bulk,unknown,unknown,,China,2015-12-01,Adult,Adult,Liver,Liver and Biliary System
47611,SRR6671794,SRX3648486,SRS2913085,SRP132190,PRJNA432942,Zebrafish genes regulated in response to Mucor circinelloides infection,PRJNA432942,Other,Determination of the genes that can be important for the defense of the host to infection for Mucorales fungi  using zebrafish and the fungus Mucor circinelloides as host and pathogen model  respectively. Total RNA was sequenced RNA seq from abdominal organs of infected fish.,,,,,PBS2,,strain:AB|dev stage:Adult|sex:not determined|tissue:Abdomen|treatment:Control innoculated with PBS|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Darnio rerio: uninffected,PBS2,PBS2,Total RNA isolated from uninfected abdominal tissue was used to generate the library using truseq kit,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP132190,,,PBS2_GCCAAT_L001_R1_001_BH8U70ADXX.filt.fastq.gz,fastq,792892359.0,15546909.0,PBS2 GCCAAT L001 R1 001 BH8U70ADXX.filt.fastq.gz,0:51,A:207417646;C:188867370;G:187996499;T:208448675;N:162169,51,,,,207417646,188867370,187996499,208448675,162169,SRX3648486,SRS2913085,SRA655550,University of Murcia|Genetics and Microbiology,University of Murcia,1,0.92826,,0.02642,,0.72815,,0.45776,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Spain,2018-09-28,Adult,Adult,Trunk,Surface Structure
47612,SRR6671795,SRX3648485,SRS2913084,SRP132190,PRJNA432942,Zebrafish genes regulated in response to Mucor circinelloides infection,PRJNA432942,Other,Determination of the genes that can be important for the defense of the host to infection for Mucorales fungi  using zebrafish and the fungus Mucor circinelloides as host and pathogen model  respectively. Total RNA was sequenced RNA seq from abdominal organs of infected fish.,,,,,RDRZ,,strain:AB|dev stage:Adult|sex:not determined|tissue:Abdomen|treatment:Infected with Mucor circinelloides spores|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of Darnio rerio: infected with Mucor circinelloides,RDRZ,RDRZ,Total RNA isolated from abdominal tissue infected with Mucor circinelloides was used to generate the library using truseq kit,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina HiSeq 2500,,SRP132190,,,RDRZ_TGACCA_L001_R1_001_BH8U70ADXX.filt.fastq.gz,fastq,741005418.0,14529518.0,RDRZ TGACCA L001 R1 001 BH8U70ADXX.filt.fastq.gz,0:51,A:192330774;C:178252917;G:175501754;T:194766886;N:153087,51,,,,192330774,178252917,175501754,194766886,153087,SRX3648485,SRS2913084,SRA655550,University of Murcia|Genetics and Microbiology,University of Murcia,1,0.91685,,0.03703,,0.70873,,0.49947,,51,,B,,usable mapping rate,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,Spain,2018-09-28,Adult,Adult,Trunk,Surface Structure
52238,SRR9044114,SRX5820656,SRS4749302,SRP197695,PRJNA542436,Regulation of hematopoiesis and endothelium function by endocytic trafficking,PRJNA542436,Other,Endocytic trafficking in endothelium,,,,,CT1,,strain:AB|isolate:ctrl MO fluorescence activated cell sorting 1|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of endothelial cells1,ct1 20191,ct1 20191,ctrl MO 1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP197695,,,CT1.gz,fastq,3222866250.0,21485775.0,CT1.gz,0:150 1:0,A:845914701;C:771891741;G:774348916;T:830705072;N:5820,150,0,,,845914701,771891741,774348916,830705072,5820,SRX5820656,SRS4749302,SRA885405,Chinese academy of sciences|institute of zoology,Chinese academy of sciences,1,0.95232,,0.09195,,0.7837,,0.45885,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-01-17,Adult,Adult,Endothelium,Cardiovascular System
52239,SRR9044115,SRX5820655,SRS4749299,SRP197695,PRJNA542436,Regulation of hematopoiesis and endothelium function by endocytic trafficking,PRJNA542436,Other,Endocytic trafficking in endothelium,,,,,CT2,,strain:AB|isolate:ctrl MO fluorescence activated cell sorting 2|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of endothelial cells2,ct1 20192,ct1 20192,ctrl MO 2,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP197695,,,CT2.gz,fastq,3992117700.0,26614118.0,CT2.gz,0:150 1:0,A:1040923084;C:961956867;G:964333886;T:1024896832;N:7031,150,0,,,1040923084,961956867,964333886,1024896832,7031,SRX5820655,SRS4749299,SRA885405,Chinese academy of sciences|institute of zoology,Chinese academy of sciences,1,0.95545,,0.087,,0.78488,,0.46466,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2019-05-11,Adult,Adult,Endothelium,Cardiovascular System
52240,SRR9044116,SRX5820654,SRS4749301,SRP197695,PRJNA542436,Regulation of hematopoiesis and endothelium function by endocytic trafficking,PRJNA542436,Other,Endocytic trafficking in endothelium,,,,,SCMO1,,strain:AB|isolate:5c MO fluorescence activated cell sorting 3|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of endothelial cells3,5c 20191,5c 20191,5c MO 1,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP197695,,,SCMO1.gz,fastq,2137379550.0,14249197.0,SCMO1.gz,0:150 1:0,A:558129907;C:517045618;G:515434728;T:546767387;N:1910,150,0,,,558129907,517045618,515434728,546767387,1910,SRX5820654,SRS4749301,SRA885405,Chinese academy of sciences|institute of zoology,Chinese academy of sciences,1,0.94546,,0.08686,,0.78709,,0.56163,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-01-17,Adult,Adult,Endothelium,Cardiovascular System
52241,SRR9044117,SRX5820653,SRS4749300,SRP197695,PRJNA542436,Regulation of hematopoiesis and endothelium function by endocytic trafficking,PRJNA542436,Other,Endocytic trafficking in endothelium,,,,,SCMO2,,strain:AB|isolate:5c MO fluorescence activated cell sorting 4|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of endothelial cells4,5c 20192,5c 20192,5c MO 2,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,SINGLE,ILLUMINA,Illumina NovaSeq 6000,,SRP197695,,,SCMO2.gz,fastq,3909804300.0,26065362.0,SCMO2.gz,0:150 1:0,A:1033271905;C:928576644;G:928527559;T:1019420939;N:7253,150,0,,,1033271905,928576644,928527559,1019420939,7253,SRX5820653,SRS4749300,SRA885405,Chinese academy of sciences|institute of zoology,Chinese academy of sciences,1,0.94475,,0.096,,0.7867,,0.55845,,150,,B,,usable mapping rate,illumina,novaseq_era,unknown,other,unknown,bulk,unknown,unknown,,China,2020-01-17,Adult,Adult,Endothelium,Cardiovascular System
52281,SRR9077085,SRX5852372,SRS4776365,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,body2 mock,s11,,breed:zebrafish|dev stage:adult|sex:NA|tissue:body6|BioSampleModel:Model organism or animal,,,,,,,,,body2 mock,WC TC 060,WC TC 060,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_060_S11.R2.fastq.gz WC_TC_060_S11.R1.fastq.gz,fastq fastq,6570204104.0,43225027.0,WC TC 060 S11.R1.fastq.gz,0:101 1:51,A:1688920476;C:1591936403;G:1547543861;T:1736945913;N:4857451,101,51,,,1688920476,1591936403,1547543861,1736945913,4857451,SRX5852372,SRS4776365,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.96893,0.96531,0.06012,0.06428,0.74002,0.74308,0.44405,0.45056,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Trunk,Surface Structure
52282,SRR9077086,SRX5852371,SRS4776364,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,body2 control,s12,,breed:zebrafish|dev stage:adult|sex:NA|tissue:body7|BioSampleModel:Model organism or animal,,,,,,,,,body2 control,WC TC 061,WC TC 061,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_061_S12.R1.fastq.gz WC_TC_061_S12.R2.fastq.gz,fastq fastq,5298115192.0,34856021.0,WC TC 061 S12.R1.fastq.gz,0:101 1:51,A:1365002199;C:1284749208;G:1236476294;T:1407970678;N:3916813,101,51,,,1365002199,1284749208,1236476294,1407970678,3916813,SRX5852371,SRS4776364,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.96855,0.96437,0.06631,0.06978,0.72819,0.73158,0.43805,0.4516,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Trunk,Surface Structure
52283,SRR9077087,SRX5852370,SRS4776363,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,body2 kd,s13,,breed:zebrafish|dev stage:adult|sex:NA|tissue:body8|BioSampleModel:Model organism or animal,,,,,,,,,body2 kd,WC TC 062,WC TC 062,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_062_S13.R1.fastq.gz WC_TC_062_S13.R2.fastq.gz,fastq fastq,6381036304.0,41980502.0,WC TC 062 S13.R1.fastq.gz,0:101 1:51,A:1647560028;C:1537878827;G:1499984084;T:1690940053;N:4673312,101,51,,,1647560028,1537878827,1499984084,1690940053,4673312,SRX5852370,SRS4776363,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.96684,0.96194,0.06383,0.06747,0.73608,0.74052,0.45347,0.4621,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Trunk,Surface Structure
52284,SRR9077088,SRX5852369,SRS4776362,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,body2 kd+wt,s14,,breed:zebrafish|dev stage:adult|sex:NA|tissue:body9|BioSampleModel:Model organism or animal,,,,,,,,,body2 kd+wt,WC TC 063,WC TC 063,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_063_S14.R1.fastq.gz WC_TC_063_S14.R2.fastq.gz,fastq fastq,5465511120.0,35957310.0,WC TC 063 S14.R1.fastq.gz,0:101 1:51,A:1414511882;C:1316966059;G:1276815442;T:1453177754;N:4039983,101,51,,,1414511882,1316966059,1276815442,1453177754,4039983,SRX5852369,SRS4776362,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.96743,0.96269,0.06264,0.06717,0.73768,0.74002,0.43946,0.44951,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Trunk,Surface Structure
52285,SRR9077089,SRX5852368,SRS4776361,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,head1 mock,s1,,breed:zebrafish|dev stage:adult|sex:NA|tissue:head1|BioSampleModel:Model organism or animal,,,,,,,,,head1 mock,WC TC 041,WC TC 041,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_041_S8.R1.fastq.gz WC_TC_041_S8.R2.fastq.gz,fastq fastq,5480620528.0,36056714.0,WC TC 041 S8.R1.fastq.gz,0:101 1:51,A:1456079218;C:1286879398;G:1250199115;T:1487095432;N:367365,101,51,,,1456079218,1286879398,1250199115,1487095432,367365,SRX5852368,SRS4776361,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.96102,0.95396,0.09057,0.09452,0.70285,0.70573,0.474,0.47396,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Head,Nervous System
52286,SRR9077090,SRX5852367,SRS4776360,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,head1 control,s2,,breed:zebrafish|dev stage:adult|sex:NA|tissue:head2|BioSampleModel:Model organism or animal,,,,,,,,,head1 control,WC TC 042,WC TC 042,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_042_S9.R1.fastq.gz WC_TC_042_S9.R2.fastq.gz,fastq fastq,5011160472.0,32968161.0,WC TC 042 S9.R1.fastq.gz,0:101 1:51,A:1328768028;C:1179737412;G:1141948263;T:1360371072;N:335697,101,51,,,1328768028,1179737412,1141948263,1360371072,335697,SRX5852367,SRS4776360,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.96134,0.95488,0.09183,0.09597,0.70203,0.70398,0.4719,0.46265,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Head,Nervous System
52287,SRR9077091,SRX5852366,SRS4776359,SRP198708,PRJNA543385,mRNA sequence of zebrafish head and body,PRJNA543385,Other,RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing,,,,head1 kd,s3,,breed:zebrafish|dev stage:adult|sex:NA|tissue:head3|BioSampleModel:Model organism or animal,,,,,,,,,head1 kd,WC TC 043,WC TC 043,TRUEseq standardised protocol,,,RNA-Seq,TRANSCRIPTOMIC,RT-PCR,PAIRED,ILLUMINA,Illumina HiSeq 2000,,SRP198708,,,WC_TC_043_S10.R1.fastq.gz WC_TC_043_S10.R2.fastq.gz,fastq fastq,5709609744.0,37563222.0,WC TC 043 S10.R1.fastq.gz,0:101 1:51,A:1517831332;C:1339538042;G:1299421324;T:1552434811;N:384235,101,51,,,1517831332,1339538042,1299421324,1552434811,384235,SRX5852366,SRS4776359,SRA887738,Southern University of Science and Technology|Department of Biology,Southern University of Science and Technology,2,0.95768,0.95177,0.10352,0.10892,0.69209,0.69556,0.4693,0.47272,101,51,B,B,biological fallback assumption,illumina,hiseq_era,unknown,other,trueseq,bulk,unknown,unknown,,China,2019-10-08,Adult,Adult,Head,Nervous System