rowid,run.accession,experiment.accession,sample.accession,study.accession,bioproject,study.title,study.alias,study.type,study.abstract,study.attributes,study.PMIDs,sample.description,sample.title,sample.alias,sample.centername,sample.attributes,GEOsample.title,GEOsample.dataprocessing,GEOsample.source,GEOsample.treatmentprotocol,GEOsample.extractprotocol,GEOsample.growthprotocol,GEOsample.characteristics,GEOsample.accession,experiment.title,experiment.alias,experiment.library_name,experiment.design_description,experiment.library_construction_protocol,experiment.attributes,experiment.library_strategy,experiment.library_source,experiment.library_selection,experiment.library_layout,experiment.platform,experiment.instrument_model,experiment.spot_descriptor,experiment.study_ref,run.title,run.attributes,run.filename,run.semantic_name,run.total_bases,run.total_spots,run.alias,run.read_lengths,run.base_counts,run.r1_length,run.r2_length,run.r3_length,run.r4_length,run.Acount,run.Ccount,run.Gcount,run.Tcount,run.Ncount,run.experiment,run.pool_member,submission.accession,submission.srasource,submission.bioprojectsource,seqdetective.n_mates,seqdetective.mapping_rate.mate1,seqdetective.mapping_rate.mate2,seqdetective.nofeature_rate.mate1,seqdetective.nofeature_rate.mate2,seqdetective.sparsity.mate1,seqdetective.sparsity.mate2,seqdetective.pos_strand_rate.mate1,seqdetective.pos_strand_rate.mate2,seqdetective.readlen.mate1,seqdetective.readlen.mate2,seqdetective.judgement.mate1,seqdetective.judgement.mate2,seqdetective.judgement.reason,platform_family,instrument_generation,read_bias,selection_class,prep_kit,sc_or_bulk,tech_class,technology,tech_variant,submission.bioprojectsource.country,earliest_date,devstage_curation,devstage_curation_coarse,tissue_curation,tissue_curation_coarse
28496,SRR26321412,SRX22029502,SRS19102283,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 1,R27,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R27,R27,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R27.fastq,fastq,23400.0,312.0,R27.fastq,0:75,A:7949;C:4612;G:4730;T:6100;N:9,75,,,,7949,4612,4730,6100,9,SRX22029502,SRS19102283,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89642,,0.06772,,0.99827,,0.75,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28497,SRR26321413,SRX22029501,SRS19102284,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 4,R22,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R22,R22,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R22.fastq,fastq,23400.0,312.0,R22.fastq,0:75,A:7470;C:4460;G:5063;T:6404;N:3,75,,,,7470,4460,5063,6404,3,SRX22029501,SRS19102284,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87073,,0.12167,,0.99801,,0.73157,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28498,SRR26321414,SRX22029500,SRS19102281,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,R21,R21,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R21,R21,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R21.fastq,fastq,23400.0,312.0,R21.fastq,0:75,A:7540;C:4349;G:4857;T:6646;N:8,75,,,,7540,4349,4857,6646,8,SRX22029500,SRS19102281,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.8839,,0.04494,,0.99768,,0.72769,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28499,SRR26321415,SRX22029499,SRS19102282,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 2,R18,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R18,R18,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R18.fastq,fastq,23400.0,312.0,R18.fastq,0:75,A:7380;C:4430;G:5069;T:6518;N:3,75,,,,7380,4430,5069,6518,3,SRX22029499,SRS19102282,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87259,,0.11196,,0.99784,,0.69791,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28500,SRR26321416,SRX22029498,SRS19102280,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,1dpci 1,R17,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 1 dpci,R17,R17,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R17.fastq,fastq,23400.0,312.0,R17.fastq,0:75,A:7322;C:4455;G:5111;T:6507;N:5,75,,,,7322,4455,5111,6507,5,SRX22029498,SRS19102280,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90439,,0.12749,,0.99813,,0.71052,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28501,SRR26321417,SRX22029497,SRS19102279,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 5,R1,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R1,R1,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R1.fastq,fastq,23400.0,312.0,R1.fastq,0:75,A:7934;C:4560;G:4922;T:5980;N:4,75,,,,7934,4560,4922,5980,4,SRX22029497,SRS19102279,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87045,,0.10526,,0.99805,,0.71978,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28502,SRR26321418,SRX22029496,SRS19102277,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 4,R64,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R64,R64,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R64.fastq,fastq,23400.0,312.0,R64.fastq,0:75,A:7844;C:4626;G:4804;T:6126;N:0,75,,,,7844,4626,4804,6126,0,SRX22029496,SRS19102277,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90119,,0.07509,,0.99839,,0.8,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28503,SRR26321419,SRX22029495,SRS19102278,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 3,R61,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R61,R61,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R61.fastq,fastq,23400.0,312.0,R61.fastq,0:75,A:7454;C:4556;G:4960;T:6425;N:5,75,,,,7454,4556,4960,6425,5,SRX22029495,SRS19102278,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89098,,0.06015,,0.99813,,0.77102,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28504,SRR26321420,SRX22029494,SRS19102276,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 4,30,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,30,30,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,30.fastq,fastq,23400.0,312.0,30.fastq,0:75,A:7732;C:4528;G:5150;T:5987;N:3,75,,,,7732,4528,5150,5987,3,SRX22029494,SRS19102276,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.88447,,0.13147,,0.99772,,0.71584,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28505,SRR26321421,SRX22029493,SRS19102275,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,R11,R11,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,R11,R11,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R11.fastq,fastq,23400.0,312.0,R11.fastq,0:75,A:7818;C:4507;G:5107;T:5956;N:12,75,,,,7818,4507,5107,5956,12,SRX22029493,SRS19102275,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.89345,,0.11475,,0.99847,,0.82258,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28506,SRR26321422,SRX22029492,SRS19102274,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 2,31,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,31,31,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,31.fastq,fastq,23400.0,312.0,31.fastq,0:75,A:7470;C:4619;G:4802;T:6504;N:5,75,,,,7470,4619,4802,6504,5,SRX22029492,SRS19102274,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87699,,0.11111,,0.99829,,0.78918,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28507,SRR26321423,SRX22029491,SRS19102273,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,7dpci 1,R9,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 7 dpci,R9,R9,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R9.fastq,fastq,23400.0,312.0,R9.fastq,0:75,A:8130;C:4537;G:4809;T:5917;N:7,75,,,,8130,4537,4809,5917,7,SRX22029491,SRS19102273,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.83588,,0.05725,,0.99801,,0.68586,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28508,SRR26321424,SRX22029490,SRS19102272,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 4,R33,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R33,R33,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R33.fastq,fastq,23400.0,312.0,R33.fastq,0:75,A:7745;C:4421;G:4867;T:6360;N:7,75,,,,7745,4421,4867,6360,7,SRX22029490,SRS19102272,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.87259,,0.07335,,0.99805,,0.71428,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28509,SRR26321425,SRX22029489,SRS19102271,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 3,R31,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R31,R31,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R31.fastq,fastq,23400.0,312.0,R31.fastq,0:75,A:7441;C:4483;G:5163;T:6313;N:0,75,,,,7441,4483,5163,6313,0,SRX22029489,SRS19102271,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.9,,0.05925,,0.9977,,0.68325,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28510,SRR26321426,SRX22029488,SRS19102270,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,3dpci 2,R29,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver 3 dpci,R29,R29,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R29.fastq,fastq,23400.0,312.0,R29.fastq,0:75,A:7379;C:4698;G:5166;T:6156;N:1,75,,,,7379,4698,5166,6156,1,SRX22029488,SRS19102270,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.91016,,0.05859,,0.99797,,0.74528,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28511,SRR26321427,SRX22029487,SRS19102269,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,,SHAM 2,R62,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R62,R62,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R62.fastq,fastq,23400.0,312.0,R62.fastq,0:75,A:7383;C:4566;G:4713;T:6728;N:10,75,,,,7383,4566,4713,6728,10,SRX22029487,SRS19102269,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.91571,,0.05363,,0.99835,,0.77674,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28512,SRR26321428,SRX22029486,SRS19102268,SRP465132,PRJNA1025903,Zebrafish cryoinjury regeneration Raw sequence reads,PRJNA1025903,Whole Genome Sequencing,Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury,,,Replicate 1 for SHAM,SHAM 1,R63,,strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia: Melbourne|sex:male|tissue:Liver|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish liver sham,R63,R63,ham and injured livers at 1  3  and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition  3 adult zebrafish livers were pooled per tube  discriminating between the injured border and liver tissue from other lobes. Finally  3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice  with a plastic pestle  to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit  Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500  with paired end 75bp reads to a depth of 15M reads per sample.,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,NextSeq 500,,SRP465132,,,R63.fastq,fastq,23400.0,312.0,R63.fastq,0:75,A:7516;C:4606;G:4765;T:6508;N:5,75,,,,7516,4606,4765,6508,5,SRX22029486,SRS19102268,SRA1727674,Peter MacCallum Cancer Centre|Organogenesis and Cancer,Peter MacCallum Cancer Centre,1,0.90385,,0.0423,,0.99805,,0.72429,,75,,B,,usable mapping rate,illumina,nextseq,unknown,random_priming,unknown,bulk,bulk,bulk,,Australia,2023-10-11,Adult,Adult,Liver,Liver and Biliary System
28513,SRR31643557,SRX27006657,SRS23471106,SRP467901,PRJNA1026724,vertebrate lungs,PRJNA1026724,Other,We provide comprehensive datasets including RNA Seq and single cell RNA sequencing scRAN seq of multiple tissues for white spotted bamboo shark  scRNA seq of multiple tissues of the African lungfish and Senegal bichir  genome of the bearded dragon  scRAN seq of African bullfrog lung and central bearded dragon lung and H3k27ac and H3k4me1 CUT&Tag sequencing data of chicken embryonic lungs from stage E9 to study the origin and evelution of vertebrate lungs.,,pubmed:39953253,,,zebrafish,,strain:Cyprinidae|age:adult|collection date:2021 09|geo loc name:China: Wuhan city  Wuhan Province|sex:not collected|tissue:swim bladder|BioSampleModel:Model organism or animal,,,,,,,,,scRNA Seq of zebrafish :swim blader,zebrafish swimbladder,zebrafish swimbladder,sequencing for single cell gene expression,,,RNA-Seq,TRANSCRIPTOMIC SINGLE CELL,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP467901,,,Dr_Sb-3_S1_L003_R2_001.fastq.gz Dr_Sb-3_S1_L003_R1_001.fastq.gz Dr_Sb-2_S1_L001_R2_001.fastq.gz Dr_Sb-2_S1_L001_R1_001.fastq.gz Dr_Sb-1_S1_L001_R2_001.fastq.gz Dr_Sb-1_S1_L001_R1_001.fastq.gz,fastq fastq fastq fastq fastq fastq,,,Dr Sb 1 S1 L001 R1 001.fastq.gz,,,,,,,,,,,,SRX27006657,,SRA2029673,Northwestern Polytechnical University|School of Ecology and Environment,Northwestern Polytechnical University,,,,,,,,,,,,,,,illumina,novaseq_era,unknown,random_priming,unknown,sc,single_cell_generic,generic-scrnaseq-only,,China,2024-12-08,Adult,Adult,Swim Bladder,Swim Bladder
29641,SRR27397714,SRX23073965,SRS20033317,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library10,PG2,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 10|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS10,RRBS10,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG2_L7_1.fq.gz PG2_L7_2.fq.gz,fastq fastq,981695400.0,3272318.0,PG2 L7 1.fq.gz,0:150 1:150,A:253124715;C:152724975;G:341105704;T:234698202;N:41804,150,150,,,253124715,152724975,341105704,234698202,41804,SRX23073965,SRS20033317,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.0164,0.00047,0.01505,0.00036,0.9961,0.99965,0.58102,0.47058,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29642,SRR27397715,SRX23073964,SRS20033316,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library9,PG1,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 9|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS9,RRBS9,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG1_L7_1.fq.gz PG1_L7_2.fq.gz,fastq fastq,1157067600.0,3856892.0,PG1 L7 1.fq.gz,0:150 1:150,A:278308283;C:162228777;G:432676687;T:283803806;N:50047,150,150,,,278308283,162228777,432676687,283803806,50047,SRX23073964,SRS20033316,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.02347,0.02319,0.02188,0.02162,0.99517,0.99519,0.50342,0.51027,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29643,SRR27397716,SRX23073963,SRS20033315,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library8,LG4,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 8|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS8,RRBS8,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG4_L7_1.fq.gz LG4_L7_2.fq.gz,fastq fastq,1080684300.0,3602281.0,LG4 L7 1.fq.gz,0:150 1:150,A:270759422;C:159278390;G:387693215;T:262907381;N:45892,150,150,,,270759422,159278390,387693215,262907381,45892,SRX23073963,SRS20033315,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01698,0.00033,0.01593,0.00026,0.99675,0.99979,0.4974,0.2,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29644,SRR27397717,SRX23073962,SRS20033314,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library7,LG3,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 7|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS7,RRBS7,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG3_L7_1.fq.gz LG3_L7_2.fq.gz,fastq fastq,1223063700.0,4076879.0,LG3 L7 1.fq.gz,0:150 1:150,A:301167012;C:182106743;G:443329321;T:296409064;N:51560,150,150,,,301167012,182106743,443329321,296409064,51560,SRX23073962,SRS20033314,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01787,0.01759,0.01644,0.01622,0.99545,0.99582,0.56826,0.56126,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29645,SRR27397718,SRX23073961,SRS20033313,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library6,LG2,,strain:ab|age:adult|collection date:2023 02 07|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 6|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS6,RRBS6,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG2_L7_1.fq.gz LG2_L7_2.fq.gz,fastq fastq,1188600300.0,3962001.0,LG2 L7 1.fq.gz,0:150 1:150,A:294477343;C:172669379;G:418732939;T:302669966;N:50673,150,150,,,294477343,172669379,418732939,302669966,50673,SRX23073961,SRS20033313,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.0205,0.02042,0.01903,0.01894,0.99584,0.99577,0.51685,0.51824,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29646,SRR27397719,SRX23073960,SRS20033312,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library5,LG1,,strain:ab|age:adult|collection date:2023 02 06|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS5,RRBS5,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,LG1_L7_1.fq.gz LG1_L7_2.fq.gz,fastq fastq,1048183200.0,3493944.0,LG1 L7 1.fq.gz,0:150 1:150,A:260330612;C:163890192;G:372783427;T:251133569;N:45400,150,150,,,260330612,163890192,372783427,251133569,45400,SRX23073960,SRS20033312,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01999,0.00059,0.01851,0.00045,0.99563,0.99961,0.49816,0.36842,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29647,SRR27397720,SRX23073959,SRS20033311,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library4,CG4,,strain:ab|age:adult|collection date:2023 02 05|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS4,RRBS4,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG4_L7_1.fq.gz CG4_L7_2.fq.gz,fastq fastq,1547200200.0,5157334.0,CG4 L7 1.fq.gz,0:150 1:150,A:389261224;C:230650937;G:559928386;T:367293552;N:66101,150,150,,,389261224,230650937,559928386,367293552,66101,SRX23073959,SRS20033311,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01121,0.00022,0.01024,0.00018,0.99713,0.99991,0.56111,1.0,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29648,SRR27397721,SRX23073958,SRS20033310,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library3,CG3,,strain:ab|age:adult|collection date:2023 02 04|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS3,RRBS3,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG3_L7_1.fq.gz CG3_L7_2.fq.gz,fastq fastq,1164022500.0,3880075.0,CG3 L7 1.fq.gz,0:150 1:150,A:281490630;C:172929357;G:423757698;T:285795200;N:49615,150,150,,,281490630,172929357,423757698,285795200,49615,SRX23073958,SRS20033310,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.0188,0.00046,0.01744,0.00039,0.99626,0.99981,0.55421,0.6,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29649,SRR27397722,SRX23073957,SRS20033309,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library12,PG4,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 12|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS12,RRBS12,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG4_L7_1.fq.gz PG4_L7_2.fq.gz,fastq fastq,937521000.0,3125070.0,PG4 L7 1.fq.gz,0:150 1:150,A:230277419;C:145742183;G:328432893;T:233027715;N:40790,150,150,,,230277419,145742183,328432893,233027715,40790,SRX23073957,SRS20033309,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01943,0.01926,0.01799,0.01786,0.99575,0.99588,0.51136,0.48062,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29650,SRR27397723,SRX23073956,SRS20033308,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library11,PG3,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 11|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS11,RRBS11,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,PG3_L7_1.fq.gz PG3_L7_2.fq.gz,fastq fastq,1256812500.0,4189375.0,PG3 L7 1.fq.gz,0:150 1:150,A:318736087;C:194540494;G:434374337;T:309107761;N:53821,150,150,,,318736087,194540494,434374337,309107761,53821,SRX23073956,SRS20033308,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.01424,0.00046,0.01316,0.00036,0.99683,0.99975,0.49746,0.5,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29651,SRR27397724,SRX23073955,SRS20033307,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library2,CG2,,strain:ab|age:adult|collection date:2023 02 03|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS2,RRBS2,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG2_L7_1.fq.gz CG2_L7_2.fq.gz,fastq fastq,1157888400.0,3859628.0,CG2 L7 1.fq.gz,0:150 1:150,A:292628434;C:171796176;G:406707172;T:286706357;N:50261,150,150,,,292628434,171796176,406707172,286706357,50261,SRX23073955,SRS20033307,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.02036,0.02023,0.01903,0.01889,0.99616,0.99614,0.55102,0.57894,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
29652,SRR27397725,SRX23073954,SRS20033306,SRP480899,PRJNA1060279,EPIFISH,PRJNA1060279,Other,Epigenetic changes in fish during domestication,,,,RRBS library1,CG1,,strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of danio rerio,RRBS1,RRBS1,Library preparation kit used  Zymo Seq RRBS Library Kit,,,Bisulfite-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP480899,,,CG1_L7_1.fq.gz CG1_L7_2.fq.gz,fastq fastq,1004867700.0,3349559.0,CG1 L7 1.fq.gz,0:150 1:150,A:247727849;C:158203386;G:350367173;T:248526527;N:42765,150,150,,,247727849,158203386,350367173,248526527,42765,SRX23073954,SRS20033306,SRA1777947,Nord University|Bioscience and Aquaculture,Nord University,2,0.02764,0.00147,0.0252,0.00121,0.99233,0.99926,0.51541,0.5,150,150,T,T,mates < 9% mapping rate,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Norway,2024-01-02,Adult,Adult,Muscle,Muscular System
30673,SRR28233239,SRX23844453,SRS20664879,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b01,,strain:TRPA1b KO1|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b01,A1b01,A1b01,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1b-S1_1.fq.gz A1b-S1_2.fq.gz,fastq fastq,10214044500.0,34046815.0,A1b S1 1.fq.gz,0:150 1:150,A:2826731317;C:2254770618;G:2368382524;T:2764027721;N:132320,150,150,,,2826731317,2254770618,2368382524,2764027721,132320,SRX23844453,SRS20664879,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30674,SRR28233240,SRX23844452,SRS20664878,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT23,,strain:WT9|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT23,WT23,WT23,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-2-3_R1.fq.gz WT-2-3_R2.fq.gz,fastq fastq,6168655800.0,20562186.0,WT 2 3 R1.fq.gz,0:150 1:150,A:1556231017;C:1526432275;G:1545153210;T:1540414611;N:424687,150,150,,,1556231017,1526432275,1545153210,1540414611,424687,SRX23844452,SRS20664878,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30675,SRR28233241,SRX23844451,SRS20664877,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT22,,strain:WT8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT22,WT22,WT22,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-2-2_R1.fq.gz WT-2-2_R2.fq.gz,fastq fastq,6503274900.0,21677583.0,WT 2 2 R1.fq.gz,0:150 1:150,A:1677274145;C:1574139629;G:1591639511;T:1659773624;N:447991,150,150,,,1677274145,1574139629,1591639511,1659773624,447991,SRX23844451,SRS20664877,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30676,SRR28233242,SRX23844450,SRS20664876,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT21,,strain:WT7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT21,WT21,WT21,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-2-1_R1.fq.gz WT-2-1_R2.fq.gz,fastq fastq,6617487600.0,22058292.0,WT 2 1 R1.fq.gz,0:150 1:150,A:1701231328;C:1606849699;G:1625342674;T:1683607145;N:456754,150,150,,,1701231328,1606849699,1625342674,1683607145,456754,SRX23844450,SRS20664876,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30677,SRR28233243,SRX23844449,SRS20664875,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT13,,strain:WT6|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT13,WT13,WT13,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-1-3_R1.fq.gz WT-1-3_R2.fq.gz,fastq fastq,7102153500.0,23673845.0,WT 1 3 R1.fq.gz,0:150 1:150,A:1842496944;C:1707310744;G:1727403195;T:1824440904;N:501713,150,150,,,1842496944,1707310744,1727403195,1824440904,501713,SRX23844449,SRS20664875,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30678,SRR28233244,SRX23844448,SRS20664874,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT12,,strain:WT5|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT12,WT12,WT12,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-1-2_R1.fq.gz WT-1-2_R2.fq.gz,fastq fastq,6904290900.0,23014303.0,WT 1 2 R1.fq.gz,0:150 1:150,A:1794495968;C:1655549612;G:1677906470;T:1775860400;N:478450,150,150,,,1794495968,1655549612,1677906470,1775860400,478450,SRX23844448,SRS20664874,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30679,SRR28233245,SRX23844447,SRS20664873,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT11,,strain:WT4|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT11,WT11,WT11,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-1-1_R1.fq.gz WT-1-1_R2.fq.gz,fastq fastq,7005297000.0,23350990.0,WT 1 1 R1.fq.gz,0:150 1:150,A:1812285786;C:1684304098;G:1717096826;T:1791123167;N:487123,150,150,,,1812285786,1684304098,1717096826,1791123167,487123,SRX23844447,SRS20664873,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30680,SRR28233246,SRX23844446,SRS20664872,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT03,,strain:WT3|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT03,WT03,WT03,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-S3_1.fq.gz WT-S3_2.fq.gz,fastq fastq,5014921200.0,16716404.0,WT S3 1.fq.gz,0:150 1:150,A:1376105590;C:1123924635;G:1152769107;T:1361994867;N:127001,150,150,,,1376105590,1123924635,1152769107,1361994867,127001,SRX23844446,SRS20664872,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30681,SRR28233247,SRX23844445,SRS20664871,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b23,,strain:TRPA1b KO9|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b23,A1b23,A1b23,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-2-3_R1.fq.gz A1-2-3_R2.fq.gz,fastq fastq,6844595700.0,22815319.0,A1 2 3 R1.fq.gz,0:150 1:150,A:1778935800;C:1644607281;G:1662211377;T:1758352025;N:489217,150,150,,,1778935800,1644607281,1662211377,1758352025,489217,SRX23844445,SRS20664871,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30682,SRR28233248,SRX23844444,SRS20664870,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b22,,strain:TRPA1b KO8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b22,A1b22,A1b22,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-2-2_R1.fq.gz A1-2-2_R2.fq.gz,fastq fastq,6529918800.0,21766396.0,A1 2 2 R1.fq.gz,0:150 1:150,A:1681524014;C:1580514490;G:1605344761;T:1662085103;N:450432,150,150,,,1681524014,1580514490,1605344761,1662085103,450432,SRX23844444,SRS20664870,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30683,SRR28233249,SRX23844443,SRS20664869,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b21,,strain:TRPA1b KO7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b21,A1b21,A1b21,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-2-1_R1.fq.gz A1-2-1_R2.fq.gz,fastq fastq,6836499600.0,22788332.0,A1 2 1 R1.fq.gz,0:150 1:150,A:1769098120;C:1648663116;G:1667962343;T:1750293771;N:482250,150,150,,,1769098120,1648663116,1667962343,1750293771,482250,SRX23844443,SRS20664869,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30684,SRR28233250,SRX23844442,SRS20664868,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b13,,strain:TRPA1b KO6|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b13,A1b13,A1b13,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-1-3_R1.fq.gz A1-1-3_R2.fq.gz,fastq fastq,7024153800.0,23413846.0,A1 1 3 R1.fq.gz,0:150 1:150,A:1803658498;C:1704926954;G:1731475860;T:1783603775;N:488713,150,150,,,1803658498,1704926954,1731475860,1783603775,488713,SRX23844442,SRS20664868,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30685,SRR28233251,SRX23844441,SRS20664867,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b12,,strain:TRPA1b KO5|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b12,A1b12,A1b12,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-1-2_R1.fq.gz A1-1-2_R2.fq.gz,fastq fastq,6764278200.0,22547594.0,A1 1 2 R1.fq.gz,0:150 1:150,A:1765465821;C:1610874768;G:1638217652;T:1749259791;N:460168,150,150,,,1765465821,1610874768,1638217652,1749259791,460168,SRX23844441,SRS20664867,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30686,SRR28233252,SRX23844440,SRS20664866,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b11,,strain:TRPA1b KO4|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b11,A1b11,A1b11,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1-1-1_R1.fq.gz A1-1-1_R2.fq.gz,fastq fastq,7001419800.0,23338066.0,A1 1 1 R1.fq.gz,0:150 1:150,A:1755052093;C:1727552789;G:1786513789;T:1731804911;N:496218,150,150,,,1755052093,1727552789,1786513789,1731804911,496218,SRX23844440,SRS20664866,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30687,SRR28233253,SRX23844439,SRS20664865,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b03,,strain:TRPA1b KO3|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b03,A1b03,A1b03,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1b-S3_1.fq.gz A1b-S3_2.fq.gz,fastq fastq,6656319000.0,22187730.0,A1b S3 1.fq.gz,0:150 1:150,A:1836354615;C:1486285665;G:1534973763;T:1798492449;N:212508,150,150,,,1836354615,1486285665,1534973763,1798492449,212508,SRX23844439,SRS20664865,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30688,SRR28233254,SRX23844438,SRS20664864,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,A1b02,,strain:TRPA1b KO2|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,A1b02,A1b02,A1b02,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,A1b-S2_1.fq.gz A1b-S2_2.fq.gz,fastq fastq,12350635200.0,41168784.0,A1b S2 1.fq.gz,0:150 1:150,A:3393503091;C:2740767056;G:2872562559;T:3343736443;N:66051,150,150,,,3393503091,2740767056,2872562559,3343736443,66051,SRX23844438,SRS20664864,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30689,SRR28233255,SRX23844437,SRS20664863,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT02,,strain:WT2|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT02,WT02,WT02,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-S2_1.fq.gz WT-S2_2.fq.gz,fastq fastq,6740391600.0,22467972.0,WT S2 1.fq.gz,0:150 1:150,A:1839600016;C:1523127157;G:1552667106;T:1824551017;N:446304,150,150,,,1839600016,1523127157,1552667106,1824551017,446304,SRX23844437,SRS20664863,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
30690,SRR28233256,SRX23844436,SRS20664862,SRP493528,PRJNA1084193,Knockout transcriptome sequencing of TRPA1b gene in zebrafish,PRJNA1084193,Other,WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment  respectively.,,,,,WT01,,strain:WT1|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal,,,,,,,,,WT01,WT01,WT01,ribonucleic acid,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP493528,,,WT-S1_1.fq.gz WT-S1_2.fq.gz,fastq fastq,7104288900.0,23680963.0,WT S1 1.fq.gz,0:150 1:150,A:1946897695;C:1592125410;G:1641002833;T:1923739782;N:523180,150,150,,,1946897695,1592125410,1641002833,1923739782,523180,SRX23844436,SRS20664862,SRA1818205,Shanghai Ocean University|College of Aquaculture and Life Sciences,Shanghai Ocean University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-03-06,Adult,Adult,Gill,Respiratory System
32362,SRR29157958,SRX24679082,SRS21413713,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary,Model organism or animal sample from Danio rerio,Ovary NPX,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish ovary RNA seq from NPX,Ovary NPX,Ovary NPX,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,H4_2.fq.gz H4_1.fq.gz H3_2.fq.gz H3_1.fq.gz H2_2.fq.gz H2_1.fq.gz H1_2.fq.gz H1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,37288126200.0,124293754.0,H1 1.fq.gz,0:150 1:150,A:9870906480;C:8895442858;G:8761667172;T:9759826428;N:283262,150,150,,,9870906480,8895442858,8761667172,9759826428,283262,SRX24679082,SRS21413713,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93451,0.93482,0.01992,0.01985,0.75966,0.75943,0.45469,0.4556,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
32363,SRR29157959,SRX24679081,SRS21413712,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary,Model organism or animal sample from Danio rerio,Ovary Ctrl,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish ovary RNA seq from Control,Ovary CTRL,Ovary CTRL,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,D4_2.fq.gz D4_1.fq.gz D3_2.fq.gz D3_1.fq.gz D2_2.fq.gz D2_1.fq.gz D1_2.fq.gz D1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,48240351600.0,160801172.0,D1 1.fq.gz,0:150 1:150,A:12507813252;C:11711256340;G:11706267844;T:12313668932;N:1345232,150,150,,,12507813252,11711256340,11706267844,12313668932,1345232,SRX24679081,SRS21413712,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93217,0.93303,0.01595,0.01634,0.75948,0.75998,0.46158,0.46061,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
32364,SRR29157960,SRX24679080,SRS21413711,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish testis,Model organism or animal sample from Danio rerio,Testis NPX,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish testis RNA seq from NPX,Testis NPX,Testis NPX,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,G4_2.fq.gz G4_1.fq.gz G3_2.fq.gz G3_1.fq.gz G2_2.fq.gz G2_1.fq.gz G1_2.fq.gz G1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,48293186700.0,160977289.0,G1 1.fq.gz,0:150 1:150,A:12737664564;C:11515099418;G:11506913376;T:12532403181;N:1106161,150,150,,,12737664564,11515099418,11506913376,12532403181,1106161,SRX24679080,SRS21413711,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93531,0.93628,0.04883,0.04847,0.66707,0.66728,0.47213,0.47226,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
32365,SRR29157961,SRX24679079,SRS21413710,SRP509709,PRJNA1115529,Danio rerio Raw sequence reads of gonadal tissue,PRJNA1115529,Whole Genome Sequencing,Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected,,,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis,Model organism or animal sample from Danio rerio,Testis CTRL,,strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal,,,,,,,,,zebrafish testis RNA seq from Control,Testis CTRL,Testis CTRL,The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq 6000,,SRP509709,,,C4_2.fq.gz C4_1.fq.gz C3_2.fq.gz C3_1.fq.gz C2_2.fq.gz C2_1.fq.gz C1_2.fq.gz C1_1.fq.gz,fastq fastq fastq fastq fastq fastq fastq fastq,47457731100.0,158192437.0,C1 1.fq.gz,0:150 1:150,A:12817545225;C:10993554835;G:10941137146;T:12704995076;N:498818,150,150,,,12817545225,10993554835,10941137146,12704995076,498818,SRX24679079,SRS21413710,SRA1876810,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina,CIIMAR - Interdisciplinary Centre of Marine and Environmental Research,2,0.93023,0.9282,0.0889,0.08851,0.63106,0.63098,0.4869,0.48618,150,150,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,Portugal,2024-05-24,Adult,Adult,Gonad,Reproductive System
33609,SRR30247666,SRX25709110,SRS22350227,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3,KO3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3,hey25nt /  replicate 3,hey25nt /  replicate 3,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_3_1.fq.gz KO_3_2.fq.gz,fastq fastq,6793426200.0,22644754.0,KO 3 1.fq.gz,0:150 1:150,A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253,150,150,,,1845779030,1550159613,1539592354,1857860950,34253,SRX25709110,SRS22350227,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94555,0.92523,0.0631,0.06139,0.76672,0.76968,0.56501,0.57019,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33610,SRR30247667,SRX25709109,SRS22350226,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutantzebrafish hearts at 3 mpf  rep2,KO2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep2,hey25nt /  replicate 2,hey25nt /  replicate 2,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_2_1.fq.gz KO_2_2.fq.gz,fastq fastq,6577703400.0,21925678.0,KO 2 1.fq.gz,0:150 1:150,A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044,150,150,,,1795319867,1492750718,1485718638,1803881133,33044,SRX25709109,SRS22350226,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94565,0.92404,0.06212,0.06008,0.77281,0.77546,0.55478,0.56589,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33611,SRR30247668,SRX25709108,SRS22350225,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1,KO1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep1,hey25nt /  replicate 1,hey25nt /  replicate 1,RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,KO_1_2.fq.gz KO_1_1.fq.gz,fastq fastq,6592159500.0,21973865.0,KO 1 1.fq.gz,0:150 1:150,A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050,150,150,,,1800707634,1491918482,1484850929,1814648405,34050,SRX25709108,SRS22350225,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94443,0.92689,0.06601,0.06488,0.76883,0.77033,0.58332,0.52175,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33612,SRR30247669,SRX25709107,SRS22350224,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3,WT3,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep3,hey2+/+ replicate 3,hey2+/+ replicate 3,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 3,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_3_1.fq.gz WT_3_2.fq.gz,fastq fastq,6582842700.0,21942809.0,WT 3 1.fq.gz,0:150 1:150,A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159,150,150,,,1796301568,1494922823,1487154319,1804427831,36159,SRX25709107,SRS22350224,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94446,0.92023,0.06492,0.06289,0.76694,0.7699,0.55651,0.53407,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33613,SRR30247670,SRX25709106,SRS22350223,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2,WT2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep2,hey2+/+ replicate 2,hey2+/+ replicate 2,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_2_2.fq.gz WT_2_1.fq.gz,fastq fastq,6632526000.0,22108420.0,WT 2 1.fq.gz,0:150 1:150,A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298,150,150,,,1811392253,1505075703,1495091968,1820928778,37298,SRX25709106,SRS22350223,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.94532,0.92096,0.06496,0.06227,0.76564,0.76909,0.56754,0.57117,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33614,SRR30247671,SRX25709105,SRS22350222,SRP526520,PRJNA1148340,RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts,PRJNA1148340,Other,To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1,WT1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  rep1,hey2+/+ replicate 1,hey2+/+ replicate 1,RNA Seq for hey2+/+ zebrafish hearts at 3 mpf  replicate 1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,BGISEQ,BGISEQ-500,,SRP526520,,,WT_1_1.fq.gz WT_1_2.fq.gz,fastq fastq,6601461900.0,22004873.0,WT 1 1.fq.gz,0:150 1:150,A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021,150,150,,,1816453592,1485325900,1476423985,1823223402,35021,SRX25709105,SRS22350222,SRA1948261,East China Normal University|School of Life Sciences,East China Normal University,2,0.9482,0.92609,0.05744,0.0553,0.77423,0.77699,0.53884,0.54075,150,150,B,B,biological fallback assumption,bgi,bgi,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-08-15,Adult,Adult,Heart,Cardiovascular System
33833,SRR31441376,SRX26810183,SRS22696876,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,HO 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 2,HO 1,HO 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600987--HO_2H.R1.raw.fastq.gz L1EHF0600987--HO_2H.R2.raw.fastq.gz,fastq fastq,6373025366.0,21102733.0,L1EHF0600987  HO 2H.R1.raw.fastq.gz,0:151 1:151,A:1745363166;C:1436102356;G:1463099869;T:1728443182;N:16793,151,151,,,1745363166,1436102356,1463099869,1728443182,16793,SRX26810183,SRS22696876,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
33834,SRR30732053,SRX26134987,SRS22696876,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,HO 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 1,HO 1,HO 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600986--H0_1H.R1.raw.fastq.gz L1EHF0600986--H0_1H.R2.raw.fastq.gz,fastq fastq,6369597666.0,21091383.0,L1EHF0600986  H0 1H.R1.raw.fastq.gz,0:151 1:151,A:1718159779;C:1459536211;G:1492957247;T:1698927602;N:16827,151,151,,,1718159779,1459536211,1492957247,1698927602,16827,SRX26134987,SRS22696876,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-09-19,Adult,Adult,Heart,Cardiovascular System
33835,SRR30732054,SRX26134986,SRS22696875,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2,WT 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 2,WT 2,WT 2,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600985--WT_2H.R1.raw.fastq.gz L1EHF0600985--WT_2H.R2.raw.fastq.gz,fastq fastq,6431668934.0,21296917.0,L1EHF0600985  WT 2H.R1.raw.fastq.gz,0:151 1:151,A:1743394409;C:1464490412;G:1498514260;T:1725252317;N:17536,151,151,,,1743394409,1464490412,1498514260,1725252317,17536,SRX26134986,SRS22696875,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-09-19,Adult,Adult,Heart,Cardiovascular System
33836,SRR30732055,SRX26134985,SRS22696874,SRP533745,PRJNA1163016,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish,PRJNA1163016,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.,,,,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1,WT 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 1,WT 1,WT 1,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP533745,,,L1EHF0600984--WT_1H.R1.raw.fastq.gz L1EHF0600984--WT_1H.R2.raw.fastq.gz,fastq fastq,6277896574.0,20787737.0,L1EHF0600984  WT 1H.R1.raw.fastq.gz,0:151 1:151,A:1703988195;C:1423563137;G:1475908891;T:1674419696;N:16655,151,151,,,1703988195,1423563137,1475908891,1674419696,16655,SRX26134985,SRS22696874,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-09-19,Adult,Adult,Heart,Cardiovascular System
34188,SRR31441224,SRX26810034,SRS23295247,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a8nt /  mutant cryosection zebrafish hearts at 6 mpf 8 mpf  rep2,HO 2 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 2,HO 2,HO 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200826-HO_2.R1.raw.fastq.gz L1EIA1200826-HO_2.R2.raw.fastq.gz,fastq fastq,7242400014.0,23981457.0,L1EIA1200826 HO 2.R1.raw.fastq.gz,0:151 1:151,A:2002602509;C:1618196753;G:1648132346;T:1968161693;N:5306713,151,151,,,2002602509,1618196753,1648132346,1968161693,5306713,SRX26810034,SRS23295247,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34189,SRR31441225,SRX26810033,SRS23295246,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a8nt /  mutant zebrafish cryosection  hearts at 6 mpf 8 mpf  rep1,HO 1 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for HO 1,HO 1,HO 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200825-HO_1.R1.raw.fastq.gz L1EIA1200825-HO_1.R2.raw.fastq.gz,fastq fastq,7908051502.0,26185601.0,L1EIA1200825 HO 1.R1.raw.fastq.gz,0:151 1:151,A:2187398944;C:1761592009;G:1795611307;T:2157740883;N:5708359,151,151,,,2187398944,1761592009,1795611307,2157740883,5708359,SRX26810033,SRS23295246,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34190,SRR31441226,SRX26810032,SRS23295245,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a+/+ zebrafish cryosection hearts at 6 mpf 8 mpf  rep2,WT 2 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 2,WT 2,WT 2,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200823-WT_2.R1.raw.fastq.gz L1EIA1200823-WT_2.R2.raw.fastq.gz,fastq fastq,7322202306.0,24245703.0,L1EIA1200823 WT 2.R1.raw.fastq.gz,0:151 1:151,A:2040218817;C:1615688362;G:1649087360;T:2012040914;N:5166853,151,151,,,2040218817,1615688362,1649087360,2012040914,5166853,SRX26810032,SRS23295245,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34191,SRR31441227,SRX26810031,SRS23295244,SRP546933,PRJNA1189340,Pseudoxanthoma elasticum PXE disease model and heart regeneration,PRJNA1189340,Other,,,,,RNA Seq for abcc6a+/+ zebrafish  cryosection hearts at 6 mpf 8 mpf  rep1,WT 1 cryosection heart,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 1,WT 1,WT 1,RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP546933,,,L1EIA1200822-WT_1.R1.raw.fastq.gz L1EIA1200822-WT_1.R2.raw.fastq.gz,fastq fastq,7055242460.0,23361730.0,L1EIA1200822 WT 1.R1.raw.fastq.gz,0:151 1:151,A:1997464555;C:1527077848;G:1561244846;T:1964383184;N:5072027,151,151,,,1997464555,1527077848,1561244846,1964383184,5072027,SRX26810031,SRS23295244,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-22,Adult,Adult,Heart,Cardiovascular System
34198,SRR31479986,SRX26848533,SRS23332379,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type3B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type3B 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 08|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type3B 2,Type3B 2,Type3B 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600995--Type3B_2.R1.raw.fastq.gz L1EHF0600995--Type3B_2.R2.raw.fastq.gz,fastq fastq,7042308404.0,23318902.0,L1EHF0600995  Type3B 2.R1.raw.fastq.gz,0:151 1:151,A:1844855580;C:1674932476;G:1701372344;T:1821129313;N:18691,151,151,,,1844855580,1674932476,1701372344,1821129313,18691,SRX26848533,SRS23332379,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34199,SRR31479987,SRX26848532,SRS23332378,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type3B 1  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type3B 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 07|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type3B 1,Type3B 1,Type3B 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600994--Type3B_1.R1.raw.fastq.gz L1EHF0600994--Type3B_1.R2.raw.fastq.gz,fastq fastq,9559607056.0,31654328.0,L1EHF0600994  Type3B 1.R1.raw.fastq.gz,0:151 1:151,A:2506873093;C:2261724862;G:2309662215;T:2481321575;N:25311,151,151,,,2506873093,2261724862,2309662215,2481321575,25311,SRX26848532,SRS23332378,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34200,SRR31479988,SRX26848531,SRS23332377,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type2B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type2B 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 06|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type2B 2,Type2B 2,Type2B 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600993--Type2B_2.R1.raw.fastq.gz L1EHF0600993--Type2B_2.R2.raw.fastq.gz,fastq fastq,8451570566.0,27985333.0,L1EHF0600993  Type2B 2.R1.raw.fastq.gz,0:151 1:151,A:2206016865;C:2013747714;G:2053206643;T:2178577239;N:22105,151,151,,,2206016865,2013747714,2053206643,2178577239,22105,SRX26848531,SRS23332377,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34201,SRR31479989,SRX26848530,SRS23332376,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type2B 1  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type2B 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 05|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type2B 1,Type2B 1,Type2B 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600992--Type2B_1.R1.raw.fastq.gz L1EHF0600992--Type2B_1.R2.raw.fastq.gz,fastq fastq,8173656576.0,27065088.0,L1EHF0600992  Type2B 1.R1.raw.fastq.gz,0:151 1:151,A:2108108352;C:1972206034;G:2007561479;T:2085759073;N:21638,151,151,,,2108108352,1972206034,2007561479,2085759073,21638,SRX26848530,SRS23332376,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34202,SRR31479990,SRX26848529,SRS23332375,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type1B 2  abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type1B 2,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 04|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type1B 2,Type1B 2,Type1B 2,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600991--Type1B_2.R1.raw.fastq.gz L1EHF0600991--Type1B_2.R2.raw.fastq.gz,fastq fastq,6856733934.0,22704417.0,L1EHF0600991  Type1B 2.R1.raw.fastq.gz,0:151 1:151,A:1819254779;C:1602255119;G:1640783411;T:1794422519;N:18106,151,151,,,1819254779,1602255119,1640783411,1794422519,18106,SRX26848529,SRS23332375,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34203,SRR31479991,SRX26848528,SRS23332374,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for Type1B 1 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf  rep1,Type1B 1,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 03|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for Type1B 1,Type1B 1,Type1B 1,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600990--Type1B_1.R1.raw.fastq.gz L1EHF0600990--Type1B_1.R2.raw.fastq.gz,fastq fastq,8199716760.0,27151380.0,L1EHF0600990  Type1B 1.R1.raw.fastq.gz,0:151 1:151,A:2143640345;C:1952882726;G:1983987224;T:2119185119;N:21346,151,151,,,2143640345,1952882726,1983987224,2119185119,21346,SRX26848528,SRS23332374,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34204,SRR31479992,SRX26848527,SRS23332373,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for WT 2B   abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep2,WT 2B,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 02|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 2B,WT 2B,WT 2B,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep2,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600989--WT_2B.R1.raw.fastq.gz L1EHF0600989--WT_2B.R2.raw.fastq.gz,fastq fastq,7647939204.0,25324302.0,L1EHF0600989  WT 2B.R1.raw.fastq.gz,0:151 1:151,A:1987849331;C:1831909030;G:1863287600;T:1964873314;N:19929,151,151,,,1987849331,1831909030,1863287600,1964873314,19929,SRX26848527,SRS23332373,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
34205,SRR31479993,SRX26848526,SRS23332372,SRP547192,PRJNA1189851,Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale,PRJNA1189851,Other,PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene  associated with adverse clinical outcomes in cardiovascular diseases. However  the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.,,,,RNA Seq for WT 1B   abcc6a8nt /  mutant zebrafish b1 at 6 mpf 8 mpf  rep1,WT 1B,,strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 01|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal,,,,,,,,,RNA Seq for WT 1B,WT 1B,WT 1B,RNA Seq for abcc6a8nt /  mutant zebrafish hearts at 6 mpf 8 mpf  rep1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 4000,,SRP547192,,,L1EHF0600988--WT_1B.R1.raw.fastq.gz L1EHF0600988--WT_1B.R2.raw.fastq.gz,fastq fastq,6899503476.0,22846038.0,L1EHF0600988  WT 1B.R1.raw.fastq.gz,0:151 1:151,A:1785929563;C:1655039537;G:1701749629;T:1756766946;N:17801,151,151,,,1785929563,1655039537,1701749629,1756766946,17801,SRX26848526,SRS23332372,,,Guangdong Cardiovascular Institute,,,,,,,,,,,,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2024-11-24,Adult,Adult,Heart,Cardiovascular System
35992,SRR33967648,SRX29166369,SRS25367088,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 5,M50 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_5_1.fq.gz M50_5_2.fq.gz,fastq fastq,5682275100.0,18940917.0,M50 5 1.fq.gz,0:150 1:150,A:1475455936;C:1352416727;G:1390067010;T:1463846184;N:489243,150,150,,,1475455936,1352416727,1390067010,1463846184,489243,SRX29166369,SRS25367088,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35993,SRR33967649,SRX29166368,SRS25367085,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 4,M50 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_4_1.fq.gz M50_4_2.fq.gz,fastq fastq,6862983600.0,22876612.0,M50 4 1.fq.gz,0:150 1:150,A:1826390013;C:1586928364;G:1633332758;T:1815810150;N:522315,150,150,,,1826390013,1586928364,1633332758,1815810150,522315,SRX29166368,SRS25367085,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35994,SRR33967650,SRX29166367,SRS25367086,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 3,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 3,M50 3,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_3_1.fq.gz M50_3_2.fq.gz,fastq fastq,5489986200.0,18299954.0,M50 3 1.fq.gz,0:150 1:150,A:1414309279;C:1315802474;G:1358108216;T:1401292283;N:473948,150,150,,,1414309279,1315802474,1358108216,1401292283,473948,SRX29166367,SRS25367086,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35995,SRR33967651,SRX29166366,SRS25367084,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 2,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 2,M50 2,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_2_1.fq.gz M50_2_2.fq.gz,fastq fastq,6673397100.0,22244657.0,M50 2 1.fq.gz,0:150 1:150,A:1750486905;C:1567228841;G:1614796130;T:1740308412;N:576812,150,150,,,1750486905,1567228841,1614796130,1740308412,576812,SRX29166366,SRS25367084,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35996,SRR33967652,SRX29166365,SRS25367083,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M50 1,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M50 1,M50 1,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M50_1_1.fq.gz M50_1_2.fq.gz,fastq fastq,6508024200.0,21693414.0,M50 1 1.fq.gz,0:150 1:150,A:1715300095;C:1523089880;G:1569687900;T:1699384578;N:561747,150,150,,,1715300095,1523089880,1569687900,1699384578,561747,SRX29166365,SRS25367083,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35997,SRR33967653,SRX29166364,SRS25367082,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 5,Control 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_5_1.fq.gz Control_5_2.fq.gz,fastq fastq,6336767400.0,21122558.0,Control 5 1.fq.gz,0:150 1:150,A:1722716287;C:1433692752;G:1463159195;T:1714640659;N:2558507,150,150,,,1722716287,1433692752,1463159195,1714640659,2558507,SRX29166364,SRS25367082,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35998,SRR33967654,SRX29166363,SRS25367081,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 4,Control 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_4_1.fq.gz Control_4_2.fq.gz,fastq fastq,7139217600.0,23797392.0,Control 4 1.fq.gz,0:150 1:150,A:1925914867;C:1636066941;G:1659441863;T:1917461225;N:332704,150,150,,,1925914867,1636066941,1659441863,1917461225,332704,SRX29166363,SRS25367081,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
35999,SRR33967655,SRX29166362,SRS25367080,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 3,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 3,Control 3,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_3_1.fq.gz Control_3_2.fq.gz,fastq fastq,6882216000.0,22940720.0,Control 3 1.fq.gz,0:150 1:150,A:1838845535;C:1585015974;G:1626971386;T:1830054397;N:1328708,150,150,,,1838845535,1585015974,1626971386,1830054397,1328708,SRX29166362,SRS25367080,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36000,SRR33967656,SRX29166361,SRS25367078,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 5,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 5,M200 5,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_5_1.fq.gz M200_5_2.fq.gz,fastq fastq,5990708400.0,19969028.0,M200 5 1.fq.gz,0:150 1:150,A:1562208536;C:1423005356;G:1454129452;T:1550849377;N:515679,150,150,,,1562208536,1423005356,1454129452,1550849377,515679,SRX29166361,SRS25367078,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36001,SRR33967657,SRX29166360,SRS25367079,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 4,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 4,M200 4,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_4_1.fq.gz M200_4_2.fq.gz,fastq fastq,7171017600.0,23903392.0,M200 4 1.fq.gz,0:150 1:150,A:1895689921;C:1679415609;G:1716680481;T:1878753538;N:478051,150,150,,,1895689921,1679415609,1716680481,1878753538,478051,SRX29166360,SRS25367079,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36002,SRR33967658,SRX29166359,SRS25367077,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 3,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 3,M200 3,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_3_1.fq.gz M200_3_2.fq.gz,fastq fastq,7072172700.0,23573909.0,M200 3 1.fq.gz,0:150 1:150,A:1846647695;C:1670426404;G:1759285280;T:1795198866;N:614455,150,150,,,1846647695,1670426404,1759285280,1795198866,614455,SRX29166359,SRS25367077,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,mate2-mate1 similar by mapping diff,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36003,SRR33967659,SRX29166358,SRS25367076,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 2,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 2,M200 2,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_2_1.fq.gz M200_2_2.fq.gz,fastq fastq,6922326900.0,23074423.0,M200 2 1.fq.gz,0:150 1:150,A:1833168494;C:1615473106;G:1653278971;T:1819792205;N:614124,150,150,,,1833168494,1615473106,1653278971,1819792205,614124,SRX29166358,SRS25367076,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36004,SRR33967660,SRX29166357,SRS25367075,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,M200 1,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,M200 1,M200 1,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,M200_1_1.fq.gz M200_1_2.fq.gz,fastq fastq,7116870600.0,23722902.0,M200 1 1.fq.gz,0:150 1:150,A:1884779262;C:1661148284;G:1695046505;T:1873189454;N:2707095,150,150,,,1884779262,1661148284,1695046505,1873189454,2707095,SRX29166357,SRS25367075,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36005,SRR33967661,SRX29166356,SRS25367074,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 2,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 2,Control 2,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_2_1.fq.gz Control_2_2.fq.gz,fastq fastq,6484371600.0,21614572.0,Control 2 1.fq.gz,0:150 1:150,A:1719589818;C:1509764847;G:1540256063;T:1713514139;N:1246733,150,150,,,1719589818,1509764847,1540256063,1713514139,1246733,SRX29166356,SRS25367074,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
36006,SRR33967662,SRX29166355,SRS25367073,SRP591856,PRJNA1256832,Danio rerio Raw sequence reads,PRJNA1256832,Whole Genome Sequencing,Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish,,,,,Control 1,,ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal,,,,,,,,,RNA seq of zebrafish,Control 1,Control 1,Normal RNA seq of Brain,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina NovaSeq X Plus,,SRP591856,,,Control_1_1.fq.gz Control_1_2.fq.gz,fastq fastq,6782206800.0,22607356.0,Control 1 1.fq.gz,0:150 1:150,A:1814302219;C:1560333202;G:1602725364;T:1804365566;N:480449,150,150,,,1814302219,1560333202,1602725364,1804365566,480449,SRX29166355,SRS25367073,SRA2148393,Nanjing Agriculture University|Wuxi Fishery College,Nanjing Agriculture University,,,,,,,,,,,,B,B,biological fallback assumption,illumina,novaseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2025-06-13,Adult,Adult,Brain,Nervous System
38290,SRR1731762,SRX821156,SRS800969,SRP051449,PRJNA266270,Danio rerio Transcriptome or Gene expression,PRJNA266270,Other,To identify molecular signals that initiate liver regeneration post 1/3 PH,,,,,Transcriptome during early stage of liver regeneration post 1/3 PH,,breed:AB line|age:10 month|biomaterial provider:The Key Laboratory of Aquatic Biodiversity and Conservation|sex:female|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptomic characterization of zebrafish liver regeneration post 1/3 partial hepatectomy,D.rereios liver regeneration sequencing project,1,1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP051449,,,6h_run1_R1.fastq.gz 6h_run1_R2.fastq.gz,fastq fastq,2014108128.0,13986862.0,6h,0:72 1:72,A:542840697;C:473739345;G:521450086;T:473979205;N:2098795,72,72,,,542840697,473739345,521450086,473979205,2098795,SRX821156,SRS800969,SRA220726,"Institute of Hydrobiology, Chinese Academy of Scie|The Key Laboratory of Aquatic Biodiversity and Con",Chinese Academy of Sciences,2,0.92698,0.90124,0.02898,0.0276,0.85141,0.85064,0.41793,0.40779,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-02-10,Adult,Adult,Liver,Liver and Biliary System
38291,SRR1735290,SRX824451,SRS804070,SRP051556,PRJNA266272,Danio rerio Transcriptome or Gene expression,PRJNA266272,Other,To investigate the mechanism of gene expression profiles and the post transcriptional regulations during liver regeneration post 1/9 PH,,,,,transcriptome during liver regeneration post 1/9 PH,,breed:AB line|strain:AB line|age:10 month|biomaterial provider:The Key Laboratory of Aquatic Biodiversity and Conservation|sex:female|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptomic characterization of zebrafish liver regeneration post 1/9 partial hepatectomy,D.rerios liver regeneration post 1/9 PH sequencing project,1,1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP051556,,,24h3_R1.fastq.gz 24h3_R2.fastq.gz,fastq fastq,1569651120.0,10900355.0,24h3,0:72 1:72,A:423126744;C:367185056;G:396200408;T:381254240;N:1884672,72,72,,,423126744,367185056,396200408,381254240,1884672,SRX824451,SRS804070,SRA221177,"Institute of Hydrobiology, Chinese Academy of Scie|The Key Laboratory of Aquatic Biodiversity and Con",Chinese Academy of Sciences,2,0.93264,0.91624,0.03854,0.0375,0.81708,0.81554,0.43719,0.43414,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-02-10,Adult,Adult,Liver,Liver and Biliary System
38292,SRR1735297,SRX824451,SRS804070,SRP051556,PRJNA266272,Danio rerio Transcriptome or Gene expression,PRJNA266272,Other,To investigate the mechanism of gene expression profiles and the post transcriptional regulations during liver regeneration post 1/9 PH,,,,,transcriptome during liver regeneration post 1/9 PH,,breed:AB line|strain:AB line|age:10 month|biomaterial provider:The Key Laboratory of Aquatic Biodiversity and Conservation|sex:female|tissue:liver|BioSampleModel:Model organism or animal,,,,,,,,,Transcriptomic characterization of zebrafish liver regeneration post 1/9 partial hepatectomy,D.rerios liver regeneration post 1/9 PH sequencing project,1,1,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP051556,,,168h1_R1.fastq.gz 168h1_R2.fastq.gz,fastq fastq,2340104400.0,16250725.0,168h1,0:72 1:72,A:667910990;C:526343343;G:603352668;T:540093539;N:2403860,72,72,,,667910990,526343343,603352668,540093539,2403860,SRX824451,SRS804070,SRA221177,"Institute of Hydrobiology, Chinese Academy of Scie|The Key Laboratory of Aquatic Biodiversity and Con",Chinese Academy of Sciences,2,0.9275,0.90676,0.03565,0.03486,0.85456,0.85421,0.42251,0.42133,72,72,B,B,biological fallback assumption,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2016-02-10,Adult,Adult,Liver,Liver and Biliary System
39974,SRR2726604,SRX1354695,SRS1121101,SRP064895,PRJNA298967,Danio rerio Raw sequence reads,PRJNA298967,Whole Genome Sequencing,Alternative polyadenylation in the anti bacterial immune response of zebrafish,,,,,UC.fq.gz,,breed:missing|cultivar:missing|ecotype:missing|isolate:missing|strain:missing|age:6 month|dev stage:adult|sex:male|tissue:spleen|BioSampleModel:Model organism or animal,,,,,,,,,Alternative polyadenylation in the anti bacterial immune response of zebrafish,UC,298967,SAPAS three prime cDNA library,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>55</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP064895,,,UC.fq.gz,fastq,908330752.0,16220192.0,UC,0:56,A:268296300;C:164753303;G:152582935;T:321764605;N:933609,56,,,,268296300,164753303,152582935,321764605,933609,SRX1354695,SRS1121101,SRA305678,"Sun Yat-Sen University|Department of Biochemistry, College of Life Scienc",Sun Yat-Sen University,1,0.76113,,0.14836,,0.86764,,0.49191,,56,,B,,usable mapping rate,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2015-10-19,Adult,Adult,Spleen,Hematopoietic System
39975,SRR2726605,SRX1343023,SRS1117908,SRP064895,PRJNA298967,Danio rerio Raw sequence reads,PRJNA298967,Whole Genome Sequencing,Alternative polyadenylation in the anti bacterial immune response of zebrafish,,,,,BC.fq.gz,,breed:missing|cultivar:missing|ecotype:missing|isolate:missing|strain:missing|age:6 month|dev stage:adult|sex:male|tissue:spleen|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal,,,,,,,,,Alternative polyadenylation in the anti bacterial immune response of zebrafish,298967,298967,SAPAS three prime cDNA library,,,RNA-Seq,TRANSCRIPTOMIC,PCR,SINGLE,ILLUMINA,Illumina Genome Analyzer IIx,<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>55</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>,SRP064895,,,BC.fq.gz,fastq,613456536.0,10954581.0,BC,0:56,A:184952368;C:111595938;G:99647506;T:216155456;N:1105268,56,,,,184952368,111595938,99647506,216155456,1105268,SRX1343023,SRS1117908,SRA305678,"Sun Yat-Sen University|Department of Biochemistry, College of Life Scienc",Sun Yat-Sen University,1,0.74636,,0.11848,,0.84678,,0.47133,,56,,B,,usable mapping rate,illumina,early_illumina,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2015-10-24,Adult,Adult,Spleen,Hematopoietic System
44037,SRR6232243,SRX3340673,SRS2642293,SRP122564,PRJNA416165,liver RNA squence,PRJNA416165,Metagenomics,Raw sequence reads of liver RNA  of four treatment,,,,C,1,,strain:not applicable|isolate:liver sample|breed:Nile tilapia|cultivar:not applicable|ecotype:missing|age:4 month|dev stage:not collected|sex:female|tissue:liver|collection date:2014 10|treatment:control|BioSampleModel:Model organism or animal,,,,,,,,,C,C,C,liver RNA,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP122564,,,13_ATCACG_L004_R2_001.fastq.gz 13_ATCACG_L004_R1_001.fastq.gz,fastq fastq,4006393272.0,15898386.0,13 ATCACG L004 R1 001.fastq.gz,0:126 1:126,A:1095412221;C:911994717;G:928631129;T:1069381941;N:973264,126,126,,,1095412221,911994717,928631129,1069381941,973264,SRX3340673,SRS2642293,SRA625810,East China Normal University|LANEH,East China Normal University,2,0.94763,0.94617,0.04358,0.04466,0.83597,0.83564,0.49418,0.48966,126,126,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-01-01,Adult,Adult,Liver,Liver and Biliary System
44038,SRR6232244,SRX3340672,SRS2642292,SRP122564,PRJNA416165,liver RNA squence,PRJNA416165,Metagenomics,Raw sequence reads of liver RNA  of four treatment,,,,F,2,,strain:not applicable|isolate:liver sample|breed:Nile tilapia|cultivar:not applicable|ecotype:missing|age:4 month|dev stage:not collected|sex:female|tissue:liver|collection date:2014 10|treatment:fasting|BioSampleModel:Model organism or animal,,,,,,,,,S,S,S,liver RNA,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP122564,,,19_CGATGT_L004_R1_001.fastq.gz 19_CGATGT_L004_R2_001.fastq.gz,fastq fastq,3329356968.0,13211734.0,19 CGATGT L004 R2 001.fastq.gz,0:126 1:126,A:869750034;C:796186215;G:810918586;T:851683226;N:818907,126,126,,,869750034,796186215,810918586,851683226,818907,SRX3340672,SRS2642292,SRA625810,East China Normal University|LANEH,East China Normal University,2,0.95382,0.95299,0.03317,0.03453,0.79024,0.79271,0.45786,0.44921,126,126,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-01-01,Adult,Adult,Liver,Liver and Biliary System
44039,SRR6232245,SRX3340671,SRS2642291,SRP122564,PRJNA416165,liver RNA squence,PRJNA416165,Metagenomics,Raw sequence reads of liver RNA  of four treatment,,,,CL,3,,strain:not applicable|isolate:liver sample|breed:Nile tilapia|cultivar:not applicable|ecotype:missing|age:4 month|dev stage:not collected|sex:female|tissue:liver|collection date:2014 10|treatment:control in low temperature|BioSampleModel:Model organism or animal,,,,,,,,,CL,CL,CL,liver RNA,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP122564,,,30_TTAGGC_L004_R1_001.fastq.gz 30_TTAGGC_L004_R2_001.fastq.gz,fastq fastq,4476914064.0,17765532.0,30 TTAGGC L004 R1 001.fastq.gz,0:126 1:126,A:1209409451;C:1033074528;G:1051420241;T:1181919392;N:1090452,126,126,,,1209409451,1033074528,1051420241,1181919392,1090452,SRX3340671,SRS2642291,SRA625810,East China Normal University|LANEH,East China Normal University,2,0.94215,0.94059,0.06325,0.06581,0.82582,0.82625,0.57851,0.59911,126,126,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-01-01,Adult,Adult,Liver,Liver and Biliary System
44040,SRR6232246,SRX3340670,SRS2642290,SRP122564,PRJNA416165,liver RNA squence,PRJNA416165,Metagenomics,Raw sequence reads of liver RNA  of four treatment,,,,FL,4,,strain:not applicable|isolate:liver sample|breed:Nile tilapia|cultivar:not applicable|ecotype:missing|age:4 month|dev stage:not collected|sex:female|tissue:liver|collection date:2014 10|treatment:fasting in low temperature|BioSampleModel:Model organism or animal,,,,,,,,,SL,SL,SL,liver RNA,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina MiSeq,,SRP122564,,,33_TGACCA_L004_R2_001.fastq.gz 33_TGACCA_L004_R1_001.fastq.gz,fastq fastq,4550986692.0,18059471.0,33 TGACCA L004 R1 001.fastq.gz,0:126 1:126,A:1207283315;C:1072491999;G:1095805633;T:1174315833;N:1089912,126,126,,,1207283315,1072491999,1095805633,1174315833,1089912,SRX3340670,SRS2642290,SRA625810,East China Normal University|LANEH,East China Normal University,2,0.94238,0.94022,0.05267,0.05506,0.8492,0.84881,0.56045,0.56064,126,126,B,B,biological fallback assumption,illumina,miseq,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2017-10-28,Adult,Adult,Liver,Liver and Biliary System
49058,SRR7637828,SRX4501382,SRS3622149,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,FiberTwo,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut11|BioSampleModel:Model organism or animal,,,,,,,,,Fiber2,FiberTwo,FiberTwo,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,SFb2_20180308_CTCAAT_S41_L002_R1_001.fastq.gz SFb2_20180308_CTCAAT_S41_L002_R2_001.fastq.gz,fastq fastq,10494618988.0,34750394.0,SFb2 20180308 CTCAAT S41 L002 R2 001.fastq.gz,0:151 1:151,A:2756954289;C:2479858860;G:2559922727;T:2697539679;N:343433,151,151,,,2756954289,2479858860,2559922727,2697539679,343433,SRX4501382,SRS3622149,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94475,0.94746,0.03971,0.03937,0.75771,0.76108,0.54085,0.52797,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2018-08-02,Adult,Adult,Whole Organism,All anatomical structures
49059,SRR7637829,SRX4501381,SRS3622148,SRP156164,PRJNA484127,Danio rerio Raw sequence reads,PRJNA484127,Whole Genome Sequencing,The toxic of MPs on Danio rerio gut.,,,,,BeadThree,,strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut9|BioSampleModel:Model organism or animal,,,,,,,,,Bead3,BeadThree,BeadThree,Analysis the zebrafish gut DEGs post uptake MPs with different shapes,,,RNA-Seq,TRANSCRIPTOMIC,PCR,PAIRED,ILLUMINA,Illumina HiSeq 2500,,SRP156164,,,MB3_20180308_CGACTG_S39_L002_R2_001.fastq.gz MB3_20180308_CGACTG_S39_L002_R1_001.fastq.gz,fastq fastq,5583089402.0,18487051.0,MB3 20180308 CGACTG S39 L002 R1 001.fastq.gz,0:151 1:151,A:1460792721;C:1322839967;G:1369668696;T:1429612084;N:175934,151,151,,,1460792721,1322839967,1369668696,1429612084,175934,SRX4501381,SRS3622148,SRA750253,Nanjing University|School of Environment,Nanjing University,2,0.94237,0.9468,0.04223,0.04177,0.74194,0.74499,0.54818,0.55571,151,151,B,B,biological fallback assumption,illumina,hiseq_era,unknown,random_priming,unknown,bulk,unknown,unknown,,China,2020-09-01,Adult,Adult,Whole Organism,All anatomical structures