rowid,query,bioproject,node,length,coverage,rel_abundance,taxname_lca,taxid_lca,taxoncategory,taxoncategorysimple,bits,evalue,lowcoverage_flag,analysis_used,target,taxid,gene,allele,pident,sumperc_cov,alnlen,mismatch,qcov,gapopen,qstart,qend,tstart,tend,target_title,analysis,sumalnlen,maxbits,bits_percmax,tax_superkingdom,tax_clade,tax_kingdom,tax_phylum,tax_class,tax_order,tax_family,tax_genus,tax_species
349391,PRJNA1241156_S_NODE_12141_length_406_cov_99.269972_g11681_i0,PRJNA1241156,12141,406,99.269972,403.03608632,Pestivirus bovis,3052619,Viruses,Viruses,580,4.019999999999999e-161,,NTclustered,gi|2587731848|gb|OR620203.1|,11099,g11681,i0,95.845,90.5812807881773,361,12,88,3,1,359,360,1,"Bovine viral diarrhea virus 1 strain 2402UYSJ/2016, partial genome",blastn,36776,580,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349401,PRJNA1241156_S_NODE_13081_length_400_cov_20.408964_g12621_i0,PRJNA1241156,13081,400,20.408964,81.635856,Pestivirus bovis,3052619,Viruses,Viruses,612,1.3999999999999996e-170,,NTclustered,gi|972905812|gb|KU200260.1|,11099,g12621,i0,94.25,100.94,400,23,100,0,1,400,5004,4605,"Bovine viral diarrhea virus 1, partial genome",blastn,40376,612,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349405,PRJNA1241156_S_NODE_13241_length_399_cov_21.511236_g12781_i0,PRJNA1241156,13241,399,21.511236,85.82983164,Pestivirus bovis,3052619,Viruses,Viruses,632,1.0699999999999998e-176,,NTclustered,gi|642594|gb|L35849.1|BVDP125B,11099,g12781,i0,95.238,99.9147869674186,399,19,100,0,1,399,1092,694,"Bovine viral diarrhea virus (strain Draper) p125 gene, partial cds",blastn,39866,632,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349435,PRJNA1241156_S_NODE_1501_length_811_cov_5.867188_g1287_i0,PRJNA1241156,1501,811,5.867188,47.58289468,Pestivirus bovis,3052619,Viruses,Viruses,1114,0,,NTclustered,gi|800924332|gb|KP941591.1|,11099,g1287,i0,91.95,98.0838471023428,795,64,98,0,17,811,2690,1896,"Bovine viral diarrhea virus 1 strain USMARC-55925 polyprotein gene, complete cds",blastn,79546,1114,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349566,PRJNA1241156_S_NODE_23041_length_353_cov_32.803226_g22581_i0,PRJNA1241156,23041,353,32.803226,115.79538778,Pestivirus bovis,3052619,Viruses,Viruses,592,1.5899999999999997e-164,,NTclustered,gi|575471150|gb|KF772785.1|,11099,g22581,i0,96.884,99.9660056657224,353,11,100,0,1,353,1726,1374,"Bovine viral diarrhea virus 1 isolate CC13B, complete genome",blastn,35288,592,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349637,PRJNA1241156_S_NODE_27321_length_339_cov_2.331081_g26861_i0,PRJNA1241156,27321,339,2.331081,7.90236459,Pestivirus bovis,3052619,Viruses,Viruses,569,7.149999999999998e-158,,NTclustered,gi|1129880555|gb|KX170645.1|,11099,g26861,i0,97.041,30.3451327433628,338,10,99,0,2,339,1287,950,"Bovine viral diarrhea virus 1 isolate V012 NS5A gene, partial cds",blastn,10287,569,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349725,PRJNA1241156_S_NODE_3301_length_580_cov_18.173184_g2908_i0,PRJNA1241156,3301,580,18.173184,105.4044672,Pestivirus bovis,3052619,Viruses,Viruses,911,0,,NTclustered,gi|323229|gb|M96687.1|BVDPP,229907,g2908,i0,95,99.8620689655172,580,29,100,0,1,580,1218,639,"Bovine viral diarrhea virus strain Osloss polyprotein gene, complete cds",blastn,57920,911,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349763,PRJNA1241156_S_NODE_35761_length_314_cov_2.132841_g35301_i0,PRJNA1241156,35761,314,2.132841,6.69712074,Pestivirus tauri,3052626,Viruses,Viruses,555,1.8399999999999994e-153,,NTclustered,gi|998226330|gb|KT832820.1|,54315,g35301,i0,98.718,98.531847133758,312,4,99,0,1,312,8754,8443,"Bovine viral diarrhea virus 2 strain USMARC-60767, complete genome",blastn,30939,555,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
349828,PRJNA1241156_S_NODE_4121_length_536_cov_14.448276_g3697_i0,PRJNA1241156,4121,536,14.448276,77.44275936,Pestivirus bovis,3052619,Viruses,Viruses,739,0,,NTclustered,gi|323225|gb|M96638.1|BVDP2014A,11099,g3697,i0,92.759,85.2518656716418,511,37,95,0,1,511,686,176,"Bovine viral diarrhea virus nonstructural protein (p20) gene; structural protein (p14) gene, partial ORF",blastn,45695,739,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
349911,PRJNA1241156_S_NODE_4661_length_515_cov_10.569915_g4229_i0,PRJNA1241156,4661,515,10.569915,54.43506225,Pestivirus bovis,3052619,Viruses,Viruses,769,0,,NTclustered,gi|1039262062|gb|KU159365.1|,11099,g4229,i0,94.4,73.4776699029126,500,28,97,0,16,515,1895,1396,"Bovine viral diarrhea virus 1 strain USII-S15 polyprotein gene, complete cds",blastn,37841,769,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
350044,PRJNA1241156_S_NODE_55721_length_262_cov_23.904110_g55261_i0,PRJNA1241156,55721,262,23.90411,62.6287682,Pestivirus bovis,3052619,Viruses,Viruses,230,1.0299999999999995e-55,,NTclustered,gi|1129879555|gb|KX170145.1|,11099,g55261,i0,93.506,65.3473282442748,154,10,59,0,109,262,233,80,"Bovine viral diarrhea virus 1 isolate V100 E2 gene, partial cds",blastn,17121,230,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
350133,PRJNA1241156_S_NODE_63281_length_247_cov_1.367647_g62821_i0,PRJNA1241156,63281,247,1.367647,3.37808809,Carlavirus latensdianthi,3427766,Viruses,Viruses,52.8,0.022,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g62821,i0,100,0.11336032388664,28,0,11,0,1,28,15,42,"Carnation latent virus isolate KL, complete genome",blastn,28,52.8,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
350161,PRJNA1241156_S_NODE_65201_length_243_cov_1.895000_g64741_i0,PRJNA1241156,65201,243,1.895,4.60485,Carlavirus latensdianthi,3427766,Viruses,Viruses,54.7,0.006,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g64741,i0,100,0.580246913580247,29,0,12,0,1,29,13,41,"Carnation latent virus isolate KL, complete genome",blastn,141,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
350193,PRJNA1241156_S_NODE_6841_length_462_cov_5.162291_g2561_i1,PRJNA1241156,6841,462,5.162291,23.84978442,Pestivirus bovis,3052619,Viruses,Viruses,680,0,,NTclustered,gi|1129880461|gb|KX170598.1|,11099,g2561,i1,93.275,99.8160173160173,461,31,99,0,1,461,789,1249,"Bovine viral diarrhea virus 1 isolate V015 NS5A gene, partial cds",blastn,46115,680,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1050557,PRJNA1241156_S_NODE_2121_length_692_cov_32.608629_g1824_i0,PRJNA1241156,2121,692,32.608629,225.65171268,Pestivirus,11095,Viruses,Viruses,1146,0,,NTclustered,gi|2858850715|gb|PQ613791.1|,11099,g1824,i0,96.532,99.9971098265896,692,24,100,0,1,692,5502,4811,"Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/Input polyprotein gene, complete cds",blastn,69198,1151,0.995655951346655,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1050773,PRJNA1241156_S_NODE_69601_length_230_cov_203.085561_g69141_i0,PRJNA1241156,69601,230,203.085561,467.0967903,Pestivirus,11095,Viruses,Viruses,411,2.939999999999999e-110,,NTclustered,gi|800924316|gb|KP941583.1|,11099,g69141,i0,98.696,99.8608695652174,230,3,100,0,1,230,904,1133,"Bovine viral diarrhea virus 1 strain USMARC-53874 polyprotein gene, complete cds",blastn,22968,414,0.992753623188406,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1624242,PRJNA1241156_S_NODE_14462_length_392_cov_3.593123_g14002_i0,PRJNA1241156,14462,392,3.593123,14.08504216,Pestivirus tauri,3052626,Viruses,Viruses,636,8.139999999999998e-178,,NTclustered,gi|998226330|gb|KT832820.1|,54315,g14002,i0,95.918,64.9948979591837,392,16,100,0,1,392,4239,3848,"Bovine viral diarrhea virus 2 strain USMARC-60767, complete genome",blastn,25478,636,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
1624310,PRJNA1241156_S_NODE_18022_length_373_cov_48.442424_g17562_i0,PRJNA1241156,18022,373,48.442424,180.69024152,Pestivirus bovis,3052619,Viruses,Viruses,606,6.039999999999997e-169,,NTclustered,gi|642594|gb|L35849.1|BVDP125B,11099,g17562,i0,95.979,99.9624664879357,373,15,100,0,1,373,1066,694,"Bovine viral diarrhea virus (strain Draper) p125 gene, partial cds",blastn,37286,606,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1624366,PRJNA1241156_S_NODE_21262_length_360_cov_6.075710_g20802_i0,PRJNA1241156,21262,360,6.07571,21.872556,Pestivirus bovis,3052619,Viruses,Viruses,610,4.489999999999999e-170,,NTclustered,gi|2127986428|gb|MW732738.1|,11099,g20802,i0,97.222,82.15,360,10,100,0,1,360,4579,4220,"Bovine viral diarrhea virus 1 strain PI407, complete genome",blastn,29574,610,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1624445,PRJNA1241156_S_NODE_2582_length_637_cov_36.510101_g2239_i0,PRJNA1241156,2582,637,36.510101,232.56934337,Pestivirus bovis,3052619,Viruses,Viruses,1061,0,,NTclustered,gi|2858850715|gb|PQ613791.1|,11099,g2239,i0,96.703,99.8587127158556,637,21,100,0,1,637,4866,5502,"Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/Input polyprotein gene, complete cds",blastn,63610,1061,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1624615,PRJNA1241156_S_NODE_35882_length_313_cov_7.192593_g35422_i0,PRJNA1241156,35882,313,7.192593,22.51281609,Pestivirus bovis,3052619,Viruses,Viruses,466,8.820000000000001e-127,,NTclustered,gi|2127986428|gb|MW732738.1|,11099,g35422,i0,93.851,71.5846645367412,309,19,99,0,1,309,3801,4109,"Bovine viral diarrhea virus 1 strain PI407, complete genome",blastn,22406,466,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1624630,PRJNA1241156_S_NODE_36902_length_311_cov_1.197761_g36442_i0,PRJNA1241156,36902,311,1.197761,3.72503671,Carlavirus latensdianthi,3427766,Viruses,Viruses,52.8,0.029,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g36442,i0,100,0.090032154340836,28,0,9,0,1,28,15,42,"Carnation latent virus isolate KL, complete genome",blastn,28,52.8,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
1624834,PRJNA1241156_S_NODE_52082_length_271_cov_1.899123_g51622_i0,PRJNA1241156,52082,271,1.899123,5.14662333,Pestivirus bovis,3052619,Viruses,Viruses,418,2.13e-112,,NTclustered,gi|2148291281|gb|MZ442301.1|,11099,g51622,i0,94.465,82.6974169741697,271,15,100,0,1,271,737,1007,"Bovine viral diarrhea virus 1 isolate ncpBVDV_LFPK-alphaVbeta6_PI polyprotein gene, complete cds",blastn,22411,418,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1624835,PRJNA1241156_S_NODE_52102_length_271_cov_1.855263_g51642_i0,PRJNA1241156,52102,271,1.855263,5.02776273,Pestivirus bovis,3052619,Viruses,Viruses,315,2.87e-81,,NTclustered,gi|1129879631|gb|KX170183.1|,11099,g51642,i0,88.213,51.3579335793358,263,31,97,0,9,271,787,525,"Bovine viral diarrhea virus 1 isolate V008 E2 gene, partial cds",blastn,13918,315,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1625019,PRJNA1241156_S_NODE_67082_length_238_cov_4.882051_g66622_i0,PRJNA1241156,67082,238,4.882051,11.61928138,Pestivirus tauri,3052626,Viruses,Viruses,401,1.8399999999999994e-107,,NTclustered,gi|1129879681|gb|KX170208.1|,54315,g66622,i0,97.059,99.9201680672269,238,7,100,0,1,238,359,596,"Bovine viral diarrhea virus 2 isolate V095 Erns gene, partial cds",blastn,23781,401,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
1625070,PRJNA1241156_S_NODE_7122_length_457_cov_34.896135_g6671_i0,PRJNA1241156,7122,457,34.896135,159.47533695,Pestivirus bovis,3052619,Viruses,Viruses,778,0,,NTclustered,gi|800924328|gb|KP941589.1|,11099,g6671,i0,97.577,99.2932166301969,454,11,99,0,1,454,10615,11068,"Bovine viral diarrhea virus 1 strain USMARC-55923 polyprotein gene, complete cds",blastn,45377,778,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1625079,PRJNA1241156_S_NODE_722_length_1405_cov_3.762115_g681_i0,PRJNA1241156,722,1405,3.762115,52.85771575,Pestivirus bovis,3052619,Viruses,Viruses,1639,0,,NTclustered,gi|2127986398|gb|MW250799.1|,11099,g681,i0,94.15,85.3900355871886,1077,62,99,1,330,1405,6419,5343,"Bovine viral diarrhea virus 1 strain 63-1, complete genome",blastn,119973,1639,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2325890,PRJNA1241156_S_NODE_11142_length_413_cov_224.802703_g10684_i0,PRJNA1241156,11142,413,224.802703,928.43516339,Pestivirus,11095,Viruses,Viruses,736,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g10684,i0,98.789,99.818401937046,413,5,100,0,1,413,10783,10371,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,41225,736,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2325929,PRJNA1241156_S_NODE_2002_length_711_cov_36.330838_g1713_i0,PRJNA1241156,2002,711,36.330838,258.31225818,Pestivirus,11095,Viruses,Viruses,1170,0,,NTclustered,gi|2633549133|gb|AF220247.2|,11099,g1713,i0,96.343,99.9901547116737,711,26,100,0,1,711,1262,1972,"Bovine viral diarrhea virus-1, complete genome",blastn,71093,1170,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2325995,PRJNA1241156_S_NODE_3182_length_589_cov_19.309524_g2798_i0,PRJNA1241156,3182,589,19.309524,113.73309636,Pestivirus,11095,Viruses,Viruses,848,0,,NTclustered,gi|2419860348|dbj|LC727645.1|,11099,g2798,i0,97.395,97.4227504244482,499,12,99,1,91,589,11640,11143,"Bovine viral diarrhea virus 1 Tokachi-13 RNA, nearly complete genome",blastn,57382,854,0.992974238875878,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2900549,PRJNA1241156_S_NODE_23883_length_350_cov_46.201954_g23423_i0,PRJNA1241156,23883,350,46.201954,161.706839,Pestivirus bovis,3052619,Viruses,Viruses,597,3.39e-166,,NTclustered,gi|642594|gb|L35849.1|BVDP125B,11099,g23423,i0,97.429,99.9457142857143,350,9,100,0,1,350,1066,717,"Bovine viral diarrhea virus (strain Draper) p125 gene, partial cds",blastn,34981,597,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2900577,PRJNA1241156_S_NODE_25883_length_343_cov_117.706667_g25423_i0,PRJNA1241156,25883,343,117.706667,403.73386781,Pestivirus bovis,3052619,Viruses,Viruses,538,2.0399999999999992e-148,,NTclustered,gi|800924332|gb|KP941591.1|,11099,g25423,i0,95.029,99.6268221574344,342,17,99,0,1,342,1151,810,"Bovine viral diarrhea virus 1 strain USMARC-55925 polyprotein gene, complete cds",blastn,34172,538,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2900580,PRJNA1241156_S_NODE_26003_length_343_cov_5.303333_g25543_i0,PRJNA1241156,26003,343,5.303333,18.19043219,Pestivirus bovis,3052619,Viruses,Viruses,496,1.25e-135,,NTclustered,gi|378753652|gb|JN380080.1|,1855262,g25543,i0,92.711,92.7521865889213,343,25,100,0,1,343,3874,4216,"Bovine viral diarrhea virus type 1a strain 6010 polyprotein gene, complete cds",blastn,31814,496,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2900646,PRJNA1241156_S_NODE_30183_length_330_cov_2.365854_g29723_i0,PRJNA1241156,30183,330,2.365854,7.8073182,Jujube closterovirus 1,3043313,Viruses,Viruses,54.7,0.009,,NTclustered,gi|2496749738|gb|OP673405.1|,3043313,g29723,i0,100,0.172727272727273,29,0,9,0,302,330,34,6,"Jujube closterovirus 1 isolate AKS15-20, complete genome",blastn,57,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Martellivirales,Closteroviridae,,Jujube closterovirus 1
2900798,PRJNA1241156_S_NODE_41143_length_299_cov_4.449219_g40683_i0,PRJNA1241156,41143,299,4.449219,13.30316481,Pestivirus tauri,3052626,Viruses,Viruses,536,6.3e-148,,NTclustered,gi|1129880561|gb|KX170648.1|,54315,g40683,i0,98.997,99.9063545150502,299,3,100,0,1,299,752,1050,"Bovine viral diarrhea virus 2 isolate V065 NS5B gene, partial cds",blastn,29872,536,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
2900805,PRJNA1241156_S_NODE_41423_length_298_cov_7.050980_g40963_i0,PRJNA1241156,41423,298,7.05098,21.0119204,Pestivirus bovis,3052619,Viruses,Viruses,484,2.3e-132,,NTclustered,gi|2496580377|gb|OP548503.1|,11099,g40963,i0,95.973,86.3892617449664,298,12,100,0,1,298,4097,4394,"Bovine viral diarrhea virus 1 isolate USMARC_PI20734 polyprotein gene, complete cds",blastn,25744,484,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2900926,PRJNA1241156_S_NODE_49303_length_277_cov_18.769231_g48843_i0,PRJNA1241156,49303,277,18.769231,51.99076987,Pestivirus bovis,3052619,Viruses,Viruses,451,2.15e-122,,NTclustered,gi|1129880361|gb|KX170548.1|,11099,g48843,i0,96.029,99.5848375451263,277,11,100,0,1,277,530,254,"Bovine viral diarrhea virus 1 isolate V060 NS4B gene, partial cds",blastn,27585,451,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2901015,PRJNA1241156_S_NODE_55983_length_262_cov_2.442922_g55523_i0,PRJNA1241156,55983,262,2.442922,6.40045564,Pestivirus tauri,3052626,Viruses,Viruses,440,4.369999999999998e-119,,NTclustered,gi|1003702981|gb|KT875160.1|,54315,g55523,i0,96.947,99.8854961832061,262,8,100,0,1,262,6891,7152,"Bovine viral diarrhea virus 2 isolate 75W polyprotein gene, complete cds",blastn,26170,440,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
2901163,PRJNA1241156_S_NODE_68663_length_233_cov_15.521053_g68203_i0,PRJNA1241156,68663,233,15.521053,36.16405349,Pestivirus bovis,3052619,Viruses,Viruses,387,5.03e-103,,NTclustered,gi|2496580377|gb|OP548503.1|,11099,g68203,i0,96.567,99.4892703862661,233,8,100,0,1,233,2334,2566,"Bovine viral diarrhea virus 1 isolate USMARC_PI20734 polyprotein gene, complete cds",blastn,23181,387,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2901249,PRJNA1241156_S_NODE_8703_length_436_cov_8.694656_g8247_i0,PRJNA1241156,8703,436,8.694656,37.90870016,Pestivirus bovis,3052619,Viruses,Viruses,614,4.279999999999998e-171,,NTclustered,gi|800924326|gb|KP941588.1|,11099,g8247,i0,92.343,98.8142201834862,431,33,99,0,4,434,10140,9710,"Bovine viral diarrhea virus 1 strain USMARC-55922 polyprotein gene, complete cds",blastn,43083,614,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3601095,PRJNA1241156_S_NODE_10063_length_422_cov_29.767810_g9607_i0,PRJNA1241156,10063,422,29.76781,125.6201582,Pestivirus,11095,Viruses,Viruses,697,0,,NTclustered,gi|386285713|gb|JQ418634.1|,11099,g9607,i0,96.445,99.6184834123223,422,15,100,0,1,422,2093,1672,"Bovine viral diarrhea virus 1 isolate 08GB45-2 polyprotein gene, complete cds",blastn,42039,697,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3601137,PRJNA1241156_S_NODE_2003_length_711_cov_23.890719_g1714_i0,PRJNA1241156,2003,711,23.890719,169.86301209,Pestivirus,11095,Viruses,Viruses,1131,0,,NTclustered,gi|2633549133|gb|AF220247.2|,11099,g1714,i0,95.359,99.9901547116737,711,33,100,0,1,711,1972,1262,"Bovine viral diarrhea virus-1, complete genome",blastn,71093,1131,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3601152,PRJNA1241156_S_NODE_2263_length_675_cov_42.509494_g1012_i2,PRJNA1241156,2263,675,42.509494,286.9390845,Pestivirus,11095,Viruses,Viruses,1131,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g1012,i2,97.16,99.6459259259259,669,19,99,0,7,675,7580,6912,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,67261,1133,0.998234774933804,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3601166,PRJNA1241156_S_NODE_2563_length_640_cov_39.453936_g2222_i0,PRJNA1241156,2563,640,39.453936,252.5051904,Pestivirus,11095,Viruses,Viruses,1038,0,,NTclustered,gi|6465859|emb|AJ238812.1|,11099,g2222,i0,95.938,99.778125,640,26,100,0,1,640,2188,1549,"pestivirus type 1 genomic RNA for E2, p7 genes and partial N2 gene, strain IDA",blastn,63858,1038,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3601183,PRJNA1241156_S_NODE_2783_length_618_cov_24.756522_g1012_i3,PRJNA1241156,2783,618,24.756522,152.99530596,Pestivirus,11095,Viruses,Viruses,902,0,,NTclustered,gi|404363563|gb|JX419398.1|,11099,g1012,i3,95.871,95.0906148867314,557,23,96,0,62,618,7337,6781,"Bovine viral diarrhea virus 1 polyprotein gene, complete cds",blastn,58766,902,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3601352,PRJNA1241156_S_NODE_67023_length_238_cov_10.758974_g66563_i0,PRJNA1241156,67023,238,10.758974,25.60635812,Pestivirus,11095,Viruses,Viruses,348,2.4300000000000005e-91,,NTclustered,gi|800924334|gb|KP941592.1|,11099,g66563,i0,94.667,93.0924369747899,225,11,94,1,2,225,11573,11797,"Bovine viral diarrhea virus 1 strain USMARC-55926 polyprotein gene, complete cds",blastn,22156,351,0.991452991452991,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4176762,PRJNA1241156_S_NODE_16984_length_378_cov_6.128358_g16524_i0,PRJNA1241156,16984,378,6.128358,23.16519324,Pestivirus bovis,3052619,Viruses,Viruses,582,1.03e-161,,NTclustered,gi|1129880061|gb|KX170398.1|,11099,g16524,i0,94.459,99.4444444444444,379,19,100,2,1,378,894,517,"Bovine viral diarrhea virus 1 isolate V057 NS2 gene, partial cds",blastn,37590,582,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4176850,PRJNA1241156_S_NODE_2204_length_682_cov_5.145540_g1523_i1,PRJNA1241156,2204,682,5.14554,35.0925828,Pestivirus bovis,3052619,Viruses,Viruses,874,0,,NTclustered,gi|542716388|gb|KF048840.1|,11099,g1523,i1,89.868,99.6759530791789,681,67,99,2,3,682,322,1001,"Bovine viral diarrhea virus 1 isolate USF12 E2 glycoprotein gene, partial cds",blastn,67979,874,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4177017,PRJNA1241156_S_NODE_3224_length_586_cov_14.104972_g2837_i0,PRJNA1241156,3224,586,14.104972,82.65513592,Pestivirus bovis,3052619,Viruses,Viruses,861,0,,NTclustered,gi|2625903271|gb|ON676186.1|,11099,g2837,i0,93.174,98.0784982935154,586,40,100,0,1,586,11087,11672,"Bovine viral diarrhea virus 1 strain Jincheon, complete genome",blastn,57474,861,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4177060,PRJNA1241156_S_NODE_35544_length_314_cov_6.416974_g35084_i0,PRJNA1241156,35544,314,6.416974,20.14929836,Pestivirus bovis,3052619,Viruses,Viruses,468,2.46e-127,,NTclustered,gi|1039262062|gb|KU159365.1|,11099,g35084,i0,95.548,92.703821656051,292,13,93,0,23,314,8168,7877,"Bovine viral diarrhea virus 1 strain USII-S15 polyprotein gene, complete cds",blastn,29109,468,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4177247,PRJNA1241156_S_NODE_48404_length_280_cov_2.383966_g47944_i0,PRJNA1241156,48404,280,2.383966,6.6751048,Pestivirus bovis,3052619,Viruses,Viruses,394,3.72e-105,,NTclustered,gi|118498778|gb|EF101530.1|,11099,g47944,i0,92.115,29.775,279,22,99,0,2,280,9379,9101,"Bovine viral diarrhea virus 1 strain KE9, complete genome",blastn,8337,394,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4177347,PRJNA1241156_S_NODE_54724_length_265_cov_1.445946_g54264_i0,PRJNA1241156,54724,265,1.445946,3.8317569,Carlavirus latensdianthi,3427766,Viruses,Viruses,54.7,0.007,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g54264,i0,100,0.532075471698113,29,0,11,0,237,265,41,13,"Carnation latent virus isolate KL, complete genome",blastn,141,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
4878625,PRJNA1241156_S_NODE_11144_length_413_cov_134.962162_g10686_i0,PRJNA1241156,11144,413,134.962162,557.39372906,Pestivirus,11095,Viruses,Viruses,719,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g10686,i0,98.063,99.8547215496368,413,8,100,0,1,413,10371,10783,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,41240,719,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4878626,PRJNA1241156_S_NODE_1184_length_926_cov_22.771234_g1012_i0,PRJNA1241156,1184,926,22.771234,210.86162684,Pestivirus,11095,Viruses,Viruses,1544,0,,NTclustered,gi|404363563|gb|JX419398.1|,11099,g1012,i0,96.76,100,926,30,100,0,1,926,6217,7142,"Bovine viral diarrhea virus 1 polyprotein gene, complete cds",blastn,92600,1544,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4878692,PRJNA1241156_S_NODE_2564_length_640_cov_38.264657_g2223_i0,PRJNA1241156,2564,640,38.264657,244.8938048,Pestivirus,11095,Viruses,Viruses,1027,0,,NTclustered,gi|6465859|emb|AJ238812.1|,11099,g2223,i0,95.625,99.771875,640,28,100,0,1,640,2188,1549,"pestivirus type 1 genomic RNA for E2, p7 genes and partial N2 gene, strain IDA",blastn,63854,1033,0.994191674733785,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4878733,PRJNA1241156_S_NODE_31564_length_325_cov_155.783688_g31104_i0,PRJNA1241156,31564,325,155.783688,506.296986,Pestivirus,11095,Viruses,Viruses,529,1.1599999999999999e-145,,NTclustered,gi|459284088|gb|JX306012.1|,11099,g31104,i0,96,99.9230769230769,325,13,100,0,1,325,762,438,"Bovine viral diarrhea virus 1 isolate Hamal polyprotein gene, partial cds",blastn,32475,534,0.99063670411985,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5452988,PRJNA1241156_S_NODE_11145_length_413_cov_122.651351_g10687_i0,PRJNA1241156,11145,413,122.651351,506.55007963,Pestivirus bovis,3052619,Viruses,Viruses,697,0,,NTclustered,gi|1129880577|gb|KX170656.1|,11099,g10687,i0,97.094,99.8450363196126,413,12,100,0,1,413,860,448,"Bovine viral diarrhea virus 1 isolate V015 NS5B gene, partial cds",blastn,41236,697,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5453298,PRJNA1241156_S_NODE_3105_length_594_cov_33.787659_g2723_i0,PRJNA1241156,3105,594,33.787659,200.69869446,Pestivirus bovis,3052619,Viruses,Viruses,617,4.619999999999999e-172,,NTclustered,gi|6465859|emb|AJ238812.1|,11099,g2723,i0,97.507,95.5892255892256,361,9,100,0,234,594,1828,2188,"pestivirus type 1 genomic RNA for E2, p7 genes and partial N2 gene, strain IDA",blastn,56780,617,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5453321,PRJNA1241156_S_NODE_32425_length_323_cov_3.835714_g31965_i0,PRJNA1241156,32425,323,3.835714,12.38935622,Pestivirus bovis,3052619,Viruses,Viruses,484,2.5199999999999998e-132,,NTclustered,gi|2127986396|gb|MW250798.1|,11099,g31965,i0,94.839,71.6068111455108,310,16,96,0,14,323,10112,9803,"Bovine viral diarrhea virus 1 strain 62-2, complete genome",blastn,23129,484,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5453847,PRJNA1241156_S_NODE_72065_length_219_cov_17.931818_g71605_i0,PRJNA1241156,72065,219,17.931818,39.27068142,Pestivirus bovis,3052619,Viruses,Viruses,355,1.32e-93,,NTclustered,gi|1129880487|gb|KX170611.1|,11099,g71605,i0,95.872,99.9178082191781,218,9,99,0,2,219,1,218,"Bovine viral diarrhea virus 1 isolate V098 NS5A gene, partial cds",blastn,21882,355,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5453855,PRJNA1241156_S_NODE_72985_length_213_cov_712.882353_g72525_i0,PRJNA1241156,72985,213,712.882353,1518.43941189,Pestivirus bovis,3052619,Viruses,Viruses,383,5.8499999999999996e-102,,NTclustered,gi|1523731873|gb|MH490943.1|,981676,g72525,i0,99.061,100.788732394366,213,2,100,0,1,213,1033,821,"Bovine viral diarrhea virus 1b strain BVDV BJ-2016, complete genome",blastn,21468,383,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6153361,PRJNA1241156_S_NODE_2645_length_632_cov_26.044143_g2295_i0,PRJNA1241156,2645,632,26.044143,164.59898376,Pestivirus,11095,Viruses,Viruses,636,1.36e-177,,NTclustered,gi|1707003|gb|U63513.1|BVU63513,11099,g2295,i0,97.574,93.8528481012658,371,9,59,0,3,373,840,1210,"Bovine viral diarrhea virus noncytopathogenic strain NCP7, polyprotein gene, E2 region to NS4B, partial cds",blastn,59315,636,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6727349,PRJNA1241156_S_NODE_11466_length_411_cov_7.625000_g11008_i0,PRJNA1241156,11466,411,7.625,31.33875,Pestivirus bovis,3052619,Viruses,Viruses,582,1.13e-161,,NTclustered,gi|2858850717|gb|PQ613792.1|,11099,g11008,i0,92.252,100.077858880779,413,28,100,3,1,411,2881,2471,"Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds",blastn,41132,582,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6727362,PRJNA1241156_S_NODE_1206_length_917_cov_9.693364_g932_i1,PRJNA1241156,1206,917,9.693364,88.88814788,Pestivirus bovis,3052619,Viruses,Viruses,1062,0,,NTclustered,gi|2127986428|gb|MW732738.1|,11099,g932,i1,94.606,92.0392584514722,686,37,100,0,1,686,10451,9766,"Bovine viral diarrhea virus 1 strain PI407, complete genome",blastn,84400,1062,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6727586,PRJNA1241156_S_NODE_2686_length_628_cov_7.312821_g2334_i0,PRJNA1241156,2686,628,7.312821,45.92451588,Pestivirus bovis,3052619,Viruses,Viruses,597,6.379999999999999e-166,,NTclustered,gi|1129880615|gb|KX170675.1|,11099,g2334,i0,93.333,82.5063694267516,405,26,64,1,225,628,1731,2135,"Bovine viral diarrhea virus 1 isolate V083 NS5B gene, partial cds",blastn,51814,597,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6727788,PRJNA1241156_S_NODE_39746_length_303_cov_2.469231_g39286_i0,PRJNA1241156,39746,303,2.469231,7.48176993,Pestivirus tauri,3052626,Viruses,Viruses,538,1.7799999999999995e-148,,NTclustered,gi|619325763|emb|HG426495.1|,54315,g39286,i0,98.68,99.986798679868,303,4,100,0,1,303,7450,7752,"Bovine viral diarrhea virus 2, complete genome, isolate VOE 4407",blastn,30296,538,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
6727885,PRJNA1241156_S_NODE_4686_length_514_cov_41.233546_g4253_i0,PRJNA1241156,4686,514,41.233546,211.94042644,Pestivirus bovis,3052619,Viruses,Viruses,822,0,,NTclustered,gi|800924316|gb|KP941583.1|,11099,g4253,i0,95.525,99.8249027237354,514,23,100,0,1,514,5208,5721,"Bovine viral diarrhea virus 1 strain USMARC-53874 polyprotein gene, complete cds",blastn,51310,822,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6727923,PRJNA1241156_S_NODE_49786_length_276_cov_9.158798_g49326_i0,PRJNA1241156,49786,276,9.158798,25.27828248,Pestivirus bovis,3052619,Viruses,Viruses,460,3.5599999999999997e-125,,NTclustered,gi|1796903432|gb|MN442400.1|,11099,g49326,i0,96.739,99.6521739130435,276,9,100,0,1,276,314,39,"Bovine viral diarrhea virus 1 isolate HN1727 N-terminal protease gene, partial cds",blastn,27504,460,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6728057,PRJNA1241156_S_NODE_58926_length_256_cov_1.507042_g58466_i0,PRJNA1241156,58926,256,1.507042,3.85802752,Jujube closterovirus 1,3043313,Viruses,Viruses,54.7,0.006,,NTclustered,gi|2496749738|gb|OP673405.1|,3043313,g58466,i0,100,0.22265625,29,0,11,0,228,256,34,6,"Jujube closterovirus 1 isolate AKS15-20, complete genome",blastn,57,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Martellivirales,Closteroviridae,,Jujube closterovirus 1
8002915,PRJNA1241156_S_NODE_1827_length_739_cov_64.521552_g1559_i0,PRJNA1241156,1827,739,64.521552,476.81426928,Pestivirus bovis,3052619,Viruses,Viruses,1221,0,,NTclustered,gi|2127986428|gb|MW732738.1|,11099,g1559,i0,96.482,101.732070365359,739,26,100,0,1,739,818,80,"Bovine viral diarrhea virus 1 strain PI407, complete genome",blastn,75180,1221,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8002920,PRJNA1241156_S_NODE_18507_length_371_cov_13.701220_g18047_i0,PRJNA1241156,18507,371,13.70122,50.8315262,Pestivirus bovis,3052619,Viruses,Viruses,608,1.6699999999999992e-169,,NTclustered,gi|1129880109|gb|KX170422.1|,11099,g18047,i0,96.226,100,371,14,100,0,1,371,1585,1955,"Bovine viral diarrhea virus 1 isolate V015 NS3 gene, partial cds",blastn,37100,608,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8002953,PRJNA1241156_S_NODE_20667_length_362_cov_206.633229_g20207_i0,PRJNA1241156,20667,362,206.633229,748.01228898,Pestivirus bovis,3052619,Viruses,Viruses,641,1.5999999999999993e-179,,NTclustered,gi|800924330|gb|KP941590.1|,11099,g20207,i0,98.619,99.1160220994475,362,5,100,0,1,362,664,303,"Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds",blastn,35880,641,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003035,PRJNA1241156_S_NODE_25867_length_344_cov_1.777409_g25407_i0,PRJNA1241156,25867,344,1.777409,6.11428696,Pestivirus tauri,3052626,Viruses,Viruses,586,7.209999999999997e-163,,NTclustered,gi|1129880351|gb|KX170543.1|,54315,g25407,i0,97.384,99.3168604651163,344,9,100,0,1,344,663,1006,"Bovine viral diarrhea virus 2 isolate V063 NS4B gene, partial cds",blastn,34165,586,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
8003068,PRJNA1241156_S_NODE_2767_length_620_cov_6.570191_g2409_i0,PRJNA1241156,2767,620,6.570191,40.7351842,Pestivirus bovis,3052619,Viruses,Viruses,907,0,,NTclustered,gi|323225|gb|M96638.1|BVDP2014A,11099,g2409,i0,93.065,91.7209677419355,620,43,100,0,1,620,686,67,"Bovine viral diarrhea virus nonstructural protein (p20) gene; structural protein (p14) gene, partial ORF",blastn,56867,907,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003082,PRJNA1241156_S_NODE_28587_length_335_cov_2.811644_g28127_i0,PRJNA1241156,28587,335,2.811644,9.4190074,Pestivirus bovis,3052619,Viruses,Viruses,512,1.21e-140,,NTclustered,gi|118498778|gb|EF101530.1|,11099,g28127,i0,94.311,99.910447761194,334,19,99,0,1,334,3630,3297,"Bovine viral diarrhea virus 1 strain KE9, complete genome",blastn,33470,512,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003114,PRJNA1241156_S_NODE_3027_length_599_cov_51.570144_g2650_i0,PRJNA1241156,3027,599,51.570144,308.90516256,Pestivirus bovis,3052619,Viruses,Viruses,1040,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g2650,i0,97.997,99.9899833055092,599,12,100,0,1,599,8598,9196,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,59894,1040,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003266,PRJNA1241156_S_NODE_4087_length_538_cov_2.997980_g3664_i0,PRJNA1241156,4087,538,2.99798,16.1291324,Pestivirus bovis,3052619,Viruses,Viruses,861,0,,NTclustered,gi|2127986428|gb|MW732738.1|,11099,g3664,i0,95.547,99.5873605947955,539,23,100,1,1,538,8210,7672,"Bovine viral diarrhea virus 1 strain PI407, complete genome",blastn,53578,861,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003276,PRJNA1241156_S_NODE_4147_length_535_cov_31.804878_g3722_i0,PRJNA1241156,4147,535,31.804878,170.1560973,Pestivirus bovis,3052619,Viruses,Viruses,889,0,,NTclustered,gi|2419860346|dbj|LC727644.1|,11099,g3722,i0,96.636,99.988785046729,535,18,100,0,1,535,8314,7780,"Bovine viral diarrhea virus 1 Tokachi-8 RNA, nearly complete genome",blastn,53494,889,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003341,PRJNA1241156_S_NODE_4687_length_514_cov_40.802548_g4254_i0,PRJNA1241156,4687,514,40.802548,209.72509672,Pestivirus bovis,3052619,Viruses,Viruses,773,0,,NTclustered,gi|800924332|gb|KP941591.1|,11099,g4254,i0,93.786,99.9552529182879,515,30,100,2,1,514,1151,638,"Bovine viral diarrhea virus 1 strain USMARC-55925 polyprotein gene, complete cds",blastn,51377,773,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003502,PRJNA1241156_S_NODE_5767_length_484_cov_101.950113_g5322_i0,PRJNA1241156,5767,484,101.950113,493.43854692,Pestivirus bovis,3052619,Viruses,Viruses,808,0,,NTclustered,gi|800924316|gb|KP941583.1|,11099,g5322,i0,96.694,99.9607438016529,484,16,100,0,1,484,904,1387,"Bovine viral diarrhea virus 1 strain USMARC-53874 polyprotein gene, complete cds",blastn,48381,808,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8003539,PRJNA1241156_S_NODE_60367_length_253_cov_1.528571_g59907_i0,PRJNA1241156,60367,253,1.528571,3.86728463,Carlavirus latensdianthi,3427766,Viruses,Viruses,60.2,1.37e-4,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g59907,i0,97.143,0.600790513833992,35,1,14,0,1,35,13,47,"Carnation latent virus isolate KL, complete genome",blastn,152,60.2,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
8703494,PRJNA1241156_S_NODE_35307_length_315_cov_3.650735_g34847_i0,PRJNA1241156,35307,315,3.650735,11.49981525,root,1,Root_unresolved,Root_unresolved,54.7,0.008,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g34847,i0,100,0.46031746031746,29,0,9,0,287,315,41,13,"Carnation latent virus isolate KL, complete genome",blastn,145,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
8703504,PRJNA1241156_S_NODE_3667_length_559_cov_6.963178_g3262_i0,PRJNA1241156,3667,559,6.963178,38.92416502,Pestivirus,11095,Viruses,Viruses,819,0,,NTclustered,gi|6465859|emb|AJ238812.1|,11099,g3262,i0,93.023,99.9463327370304,559,39,100,0,1,559,844,286,"pestivirus type 1 genomic RNA for E2, p7 genes and partial N2 gene, strain IDA",blastn,55870,819,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8703508,PRJNA1241156_S_NODE_37227_length_310_cov_1.891386_g36767_i0,PRJNA1241156,37227,310,1.891386,5.8632966,Pestivirus,11095,Viruses,Viruses,418,2.4799999999999996e-112,,NTclustered,gi|2743179411|gb|PP856399.1|,11099,g36767,i0,90.968,97.9129032258064,310,28,100,0,1,310,2189,1880,"Bovine viral diarrhea virus 1 strain PZ11, partial genome",blastn,30353,418,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8703546,PRJNA1241156_S_NODE_4567_length_518_cov_33.202105_g4136_i0,PRJNA1241156,4567,518,33.202105,171.9869039,Pestivirus,11095,Viruses,Viruses,813,0,,NTclustered,gi|2633549133|gb|AF220247.2|,11099,g4136,i0,94.981,99.9903474903475,518,26,100,0,1,518,1779,1262,"Bovine viral diarrhea virus-1, complete genome",blastn,51795,813,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
8703580,PRJNA1241156_S_NODE_55627_length_263_cov_1.495455_g55167_i0,PRJNA1241156,55627,263,1.495455,3.93304665,Pestivirus,11095,Viruses,Viruses,311,3.59e-80,,NTclustered,gi|2067731924|gb|MW528225.1|,11099,g55167,i0,93.75,79.8326996197719,208,12,79,1,56,263,6887,7093,"Bovine viral diarrhea virus 1 isolate 2016BVD01436, partial genome",blastn,20996,311,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278051,PRJNA1241156_S_NODE_3028_length_599_cov_36.762590_g2651_i0,PRJNA1241156,3028,599,36.76259,220.2079141,Pestivirus bovis,3052619,Viruses,Viruses,979,0,,NTclustered,gi|1129880467|gb|KX170601.1|,11099,g2651,i0,96.16,100,599,23,100,0,1,599,761,163,"Bovine viral diarrhea virus 1 isolate V100 NS5A gene, partial cds",blastn,59900,979,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278069,PRJNA1241156_S_NODE_31268_length_326_cov_7.431095_g30808_i0,PRJNA1241156,31268,326,7.431095,24.2253697,Pestivirus bovis,3052619,Viruses,Viruses,501,2.53e-137,,NTclustered,gi|1540352923|gb|MH231153.1|,11099,g30808,i0,94.462,99.5613496932515,325,18,99,0,1,325,9353,9677,"Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds",blastn,32457,501,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278409,PRJNA1241156_S_NODE_55728_length_262_cov_15.858447_g55268_i0,PRJNA1241156,55728,262,15.858447,41.54913114,Pestivirus bovis,3052619,Viruses,Viruses,429,9.449999999999999e-116,,NTclustered,gi|323227|gb|M96639.1|BVDP20A,11099,g55268,i0,96.183,99.9923664122137,262,10,100,0,1,262,499,238,"Bovine viral diarrhea virus nonstructural proteins (p125/p80, p20) partial cds",blastn,26198,429,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278517,PRJNA1241156_S_NODE_63188_length_247_cov_1.887255_g62728_i0,PRJNA1241156,63188,247,1.887255,4.66151985,Pestivirus bovis,3052619,Viruses,Viruses,392,1.1599999999999999e-104,,NTclustered,gi|1129880051|gb|KX170393.1|,11099,g62728,i0,95.528,97.3117408906883,246,9,99,2,3,247,1199,955,"Bovine viral diarrhea virus 1 isolate V092 NS2 gene, partial cds",blastn,24036,392,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278550,PRJNA1241156_S_NODE_65888_length_241_cov_19.136364_g65428_i0,PRJNA1241156,65888,241,19.136364,46.11863724,Pestivirus bovis,3052619,Viruses,Viruses,385,1.88e-102,,NTclustered,gi|1707003|gb|U63513.1|BVU63513,11099,g65428,i0,95.436,100.98755186722,241,11,100,0,1,241,1017,777,"Bovine viral diarrhea virus noncytopathogenic strain NCP7, polyprotein gene, E2 region to NS4B, partial cds",blastn,24338,385,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278568,PRJNA1241156_S_NODE_6708_length_464_cov_10.691211_g6259_i0,PRJNA1241156,6708,464,10.691211,49.60721904,Pestivirus bovis,3052619,Viruses,Viruses,774,0,,NTclustered,gi|1129880597|gb|KX170666.1|,11099,g6259,i0,96.767,99.9418103448276,464,15,100,0,1,464,1093,1556,"Bovine viral diarrhea virus 1 isolate V098 NS5B gene, partial cds",blastn,46373,774,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278570,PRJNA1241156_S_NODE_67128_length_238_cov_3.841026_g66668_i0,PRJNA1241156,67128,238,3.841026,9.14164188,Pestivirus bovis,3052619,Viruses,Viruses,339,1.4699999999999999e-88,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g66668,i0,92.405,83.6932773109244,237,18,99,0,2,238,2391,2627,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,19919,339,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9278653,PRJNA1241156_S_NODE_76748_length_200_cov_274.649682_g76288_i0,PRJNA1241156,76748,200,274.649682,549.299364,Pestivirus bovis,3052619,Viruses,Viruses,337,4.28e-88,,NTclustered,gi|5714458|gb|AF145363.1|AF145363,11099,g76288,i0,97,99.825,200,6,100,0,1,200,428,229,"Pestivirus type 1 strain NY-1 Npro gene, partial cds",blastn,19965,337,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9978669,PRJNA1241156_S_NODE_24468_length_348_cov_19.829508_g24008_i0,PRJNA1241156,24468,348,19.829508,69.00668784,Pestivirus,11095,Viruses,Viruses,580,3.3999999999999986e-161,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g24008,i0,96.83,99.9080459770115,347,11,99,0,1,347,4105,3759,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,34768,580,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9978730,PRJNA1241156_S_NODE_38368_length_306_cov_30.615970_g37908_i0,PRJNA1241156,38368,306,30.61597,93.6848682,Pestivirus,11095,Viruses,Viruses,521,1.8099999999999995e-143,,NTclustered,gi|1129880361|gb|KX170548.1|,11099,g37908,i0,97.386,99.6535947712418,306,8,100,0,1,306,530,225,"Bovine viral diarrhea virus 1 isolate V060 NS4B gene, partial cds",blastn,30494,521,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9978749,PRJNA1241156_S_NODE_4468_length_522_cov_44.484342_g4039_i0,PRJNA1241156,4468,522,44.484342,232.20826524,Pestivirus,11095,Viruses,Viruses,920,0,,NTclustered,gi|2625903273|gb|ON676187.1|,11099,g4039,i0,98.467,99.9195402298851,522,8,100,0,1,522,11334,10813,"Bovine viral diarrhea virus 1 strain Chilgok, complete genome",blastn,52158,920,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
10553621,PRJNA1241156_S_NODE_13089_length_400_cov_15.044818_g12629_i0,PRJNA1241156,13089,400,15.044818,60.179272,Pestivirus bovis,3052619,Viruses,Viruses,608,1.809999999999999e-169,,NTclustered,gi|800924330|gb|KP941590.1|,11099,g12629,i0,95.078,96.35,386,19,97,0,15,400,8564,8179,"Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds",blastn,38540,608,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
10553748,PRJNA1241156_S_NODE_20669_length_362_cov_150.150470_g20209_i0,PRJNA1241156,20669,362,150.15047,543.5447014,Pestivirus bovis,3052619,Viruses,Viruses,608,1.619999999999999e-169,,NTclustered,gi|800924330|gb|KP941590.1|,11099,g20209,i0,96.961,99.9171270718232,362,11,100,0,1,362,664,303,"Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds",blastn,36170,608,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
10553779,PRJNA1241156_S_NODE_2249_length_676_cov_47.921011_g1939_i0,PRJNA1241156,2249,676,47.921011,323.94603436,Pestivirus bovis,3052619,Viruses,Viruses,778,0,,NTclustered,gi|1129879565|gb|KX170150.1|,11099,g1939,i0,92.897,83.6952662721893,535,38,79,0,142,676,4,538,"Bovine viral diarrhea virus 1 isolate V098 E2 gene, partial cds",blastn,56578,778,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis