rowid,query,bioproject,node,length,coverage,rel_abundance,taxname_lca,taxid_lca,taxoncategory,taxoncategorysimple,bits,evalue,lowcoverage_flag,analysis_used,target,taxid,gene,allele,pident,sumperc_cov,alnlen,mismatch,qcov,gapopen,qstart,qend,tstart,tend,target_title,analysis,sumalnlen,maxbits,bits_percmax,tax_superkingdom,tax_clade,tax_kingdom,tax_phylum,tax_class,tax_order,tax_family,tax_genus,tax_species
184558,PRJNA1069776_S_NODE_16701_length_254_cov_3.360190_g16387_i0,PRJNA1069776,16701,254,3.36019,8.5348826,Pestivirus bovis,3052619,Viruses,Viruses,399,7.149999999999999e-107,,NTclustered,gi|1129880487|gb|KX170611.1|,11099,g16387,i0,94.882,99.7795275590551,254,13,100,0,1,254,13,266,"Bovine viral diarrhea virus 1 isolate V098 NS5A gene, partial cds",blastn,25344,399,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
184624,PRJNA1069776_S_NODE_21561_length_227_cov_488.326087_g21247_i0,PRJNA1069776,21561,227,488.326087,1108.50021749,Betacoronavirus pandemicum,3418604,Viruses,Viruses,121,5.46e-23,,NTclustered,gi|2165835030|emb|OV196298.1|,2697049,g21247,i0,94.872,41.1541850220264,78,2,34,2,10,87,75,150,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,9342,121,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
184667,PRJNA1069776_S_NODE_2441_length_465_cov_9.808057_g2128_i0,PRJNA1069776,2441,465,9.808057,45.60746505,Pestivirus bovis,3052619,Viruses,Viruses,743,0,,NTclustered,gi|1540352923|gb|MH231153.1|,11099,g2128,i0,95.484,99.5225806451613,465,21,100,0,1,465,3981,4445,"Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds",blastn,46278,743,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
184703,PRJNA1069776_S_NODE_2681_length_448_cov_86.866667_g2368_i0,PRJNA1069776,2681,448,86.866667,389.16266816,Pestivirus bovis,3052619,Viruses,Viruses,728,0,,NTclustered,gi|459284076|gb|JX297517.1|,981676,g2368,i0,95.982,100.897321428571,448,18,100,0,1,448,203,650,"Bovine viral diarrhea virus type 1b isolate Hercules polyprotein gene, complete cds",blastn,45202,728,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
184972,PRJNA1069776_S_NODE_50601_length_155_cov_2.517857_g50287_i0,PRJNA1069776,50601,155,2.517857,3.90267835,Betacoronavirus pandemicum,3418604,Viruses,Viruses,287,3.21e-73,,NTclustered,gi|2186340933|gb|OM464523.1|,2697049,g50287,i0,100,100,155,0,100,0,1,155,18422,18268,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-STM-9XEERMHV2/2022, complete genome",blastn,15500,287,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
1014674,PRJNA1069776_S_NODE_34081_length_186_cov_3.202797_g33767_i0,PRJNA1069776,34081,186,3.202797,5.95720242,Pestivirus,11095,Viruses,Viruses,300,5.1400000000000004e-77,,NTclustered,gi|1129880587|gb|KX170661.1|,11099,g33767,i0,95.699,99.4247311827957,186,8,100,0,1,186,1488,1673,"Bovine viral diarrhea virus 1 isolate V045 NS5B gene, partial cds",blastn,18493,303,0.99009900990099,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1459110,PRJNA1069776_S_NODE_1122_length_646_cov_5.540630_g884_i0,PRJNA1069776,1122,646,5.54063,35.7924698,Betacoronavirus pandemicum,3418604,Viruses,Viruses,1194,0,,NTclustered,gi|2155894178|emb|OV044165.1|,2697049,g884,i0,100,100,646,0,100,0,1,646,26399,25754,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,64600,1194,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
1459138,PRJNA1069776_S_NODE_1342_length_590_cov_13.881170_g1068_i0,PRJNA1069776,1342,590,13.88117,81.898903,Pestivirus bovis,3052619,Viruses,Viruses,1013,0,,NTclustered,gi|1129880361|gb|KX170548.1|,11099,g1068,i0,97.627,99.9847457627119,590,14,100,0,1,590,242,831,"Bovine viral diarrhea virus 1 isolate V060 NS4B gene, partial cds",blastn,58991,1013,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1459157,PRJNA1069776_S_NODE_1462_length_569_cov_7.317490_g1180_i0,PRJNA1069776,1462,569,7.31749,41.6365181,Pestivirus tauri,3052626,Viruses,Viruses,1007,0,,NTclustered,gi|1540352891|gb|MH231137.1|,54315,g1180,i0,98.594,99.4604569420035,569,8,100,0,1,569,1179,611,"Bovine viral diarrhea virus 2 isolate MadSpl polyprotein gene, complete cds",blastn,56593,1007,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
1459179,PRJNA1069776_S_NODE_16222_length_257_cov_2.901869_g15908_i0,PRJNA1069776,16222,257,2.901869,7.45780333,Jujube closterovirus 1,3043313,Viruses,Viruses,54.7,0.006,,NTclustered,gi|2496749738|gb|OP673405.1|,3043313,g15908,i0,100,0.221789883268482,29,0,11,0,1,29,6,34,"Jujube closterovirus 1 isolate AKS15-20, complete genome",blastn,57,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Martellivirales,Closteroviridae,,Jujube closterovirus 1
1459233,PRJNA1069776_S_NODE_2042_length_496_cov_11.604857_g1739_i0,PRJNA1069776,2042,496,11.604857,57.56009072,Pestivirus bovis,3052619,Viruses,Viruses,797,0,,NTclustered,gi|1072900293|gb|KU756226.1|,981676,g1739,i0,95.927,99.5766129032258,491,20,99,0,2,492,7059,7549,"Bovine viral diarrhea virus 1b strain HJ-1 polyprotein gene, complete cds",blastn,49390,797,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
1459301,PRJNA1069776_S_NODE_24782_length_214_cov_4.204678_g24468_i0,PRJNA1069776,24782,214,4.204678,8.99801092,Betacoronavirus pandemicum,3418604,Viruses,Viruses,396,7.559999999999996e-106,,NTclustered,gi|2028980905|gb|MZ002360.1|,2697049,g24468,i0,100,100,214,0,100,0,1,214,21639,21852,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome",blastn,21400,396,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
1459398,PRJNA1069776_S_NODE_32402_length_190_cov_6.000000_g32088_i0,PRJNA1069776,32402,190,6,11.4,Betacoronavirus pandemicum,3418604,Viruses,Viruses,351,1.4399999999999997e-92,,NTclustered,gi|2055103307|emb|OU198267.1|,2697049,g32088,i0,100,100,190,0,100,0,1,190,19872,20061,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,19000,351,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
1459478,PRJNA1069776_S_NODE_38362_length_176_cov_3.887218_g38048_i0,PRJNA1069776,38362,176,3.887218,6.84150368,Betacoronavirus pandemicum,3418604,Viruses,Viruses,326,7.92e-85,,NTclustered,gi|2028980905|gb|MZ002360.1|,2697049,g38048,i0,100,100,176,0,100,0,1,176,23028,23203,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome",blastn,17600,326,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
1459625,PRJNA1069776_S_NODE_5242_length_369_cov_4.858896_g4928_i0,PRJNA1069776,5242,369,4.858896,17.92932624,Pestivirus bovis,3052619,Viruses,Viruses,590,6.0099999999999985e-164,,NTclustered,gi|1129880209|gb|KX170472.1|,11099,g4928,i0,95.393,103.436314363144,369,17,100,0,1,369,643,1011,"Bovine viral diarrhea virus 1 isolate V099 NS3 gene, partial cds",blastn,38168,590,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2289983,PRJNA1069776_S_NODE_36802_length_180_cov_1.751825_g36488_i0,PRJNA1069776,36802,180,1.751825,3.153285,root,1,Root_unresolved,Root_unresolved,54.7,0.004,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g36488,i0,92.308,1,39,2,22,1,1,39,13,50,"Carnation latent virus isolate KL, complete genome",blastn,180,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
2735095,PRJNA1069776_S_NODE_13683_length_274_cov_7.051948_g13369_i0,PRJNA1069776,13683,274,7.051948,19.32233752,Pestivirus tauri,3052626,Viruses,Viruses,429,9.949999999999999e-116,,NTclustered,gi|1540305503|gb|MH806435.1|,54315,g13369,i0,94.891,99.463503649635,274,14,100,0,1,274,1805,1532,"Bovine viral diarrhea virus 2 isolate 1336H, complete genome",blastn,27253,429,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
2735695,PRJNA1069776_S_NODE_9523_length_312_cov_5.271375_g9209_i0,PRJNA1069776,9523,312,5.271375,16.44669,Pestivirus bovis,3052619,Viruses,Viruses,527,3.9799999999999996e-145,,NTclustered,gi|1408941636|gb|MH311877.1|,981676,g9209,i0,97.115,99.9551282051282,312,9,100,0,1,312,1131,1442,"Bovine viral diarrhea virus 1b isolate B4A d168 polyprotein gene, partial cds",blastn,31186,527,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
2735696,PRJNA1069776_S_NODE_9543_length_312_cov_3.843866_g9229_i0,PRJNA1069776,9543,312,3.843866,11.99286192,Pestivirus bovis,3052619,Viruses,Viruses,438,1.9199999999999998e-118,,NTclustered,gi|2587731848|gb|OR620203.1|,11099,g9229,i0,91.987,65.650641025641,312,25,100,0,1,312,4348,4037,"Bovine viral diarrhea virus 1 strain 2402UYSJ/2016, partial genome",blastn,20483,438,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
3565213,PRJNA1069776_S_NODE_2263_length_478_cov_17.698851_g1953_i0,PRJNA1069776,2263,478,17.698851,84.60050778,Pestivirus,11095,Viruses,Viruses,665,0,,NTclustered,gi|386285712|gb|JQ418633.1|,11099,g1953,i0,93.157,44.9142259414226,453,31,95,0,4,456,9842,9390,"Bovine viral diarrhea virus 1 isolate 08GB44-1 polyprotein gene, complete cds",blastn,21469,665,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4010990,PRJNA1069776_S_NODE_1164_length_635_cov_7.096284_g913_i0,PRJNA1069776,1164,635,7.096284,45.0614034,Betacoronavirus pandemicum,3418604,Viruses,Viruses,1173,0,,NTclustered,gi|2040238967|emb|OU007694.1|,2697049,g913,i0,100,100,635,0,100,0,1,635,25710,25076,"Severe acute respiratory syndrome coronavirus 2 isolate hCoV-19/Switzerland/UR-ETHZ-260020/2020 genome assembly, chromosome: 1",blastn,63500,1173,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
4010997,PRJNA1069776_S_NODE_12024_length_288_cov_4.216327_g11710_i0,PRJNA1069776,12024,288,4.216327,12.14302176,Betacoronavirus pandemicum,3418604,Viruses,Viruses,532,7.8e-147,,NTclustered,gi|2164092590|gb|OL820718.1|,2697049,g11710,i0,100,100,288,0,100,0,1,288,18228,17941,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CO-CDPHE-2102190097/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes, complete cds; and ORF10 protein (ORF10) gene, partial cds",blastn,28800,532,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
4011012,PRJNA1069776_S_NODE_12984_length_280_cov_3.130802_g12670_i0,PRJNA1069776,12984,280,3.130802,8.7662456,Jujube closterovirus 1,3043313,Viruses,Viruses,56.5,0.002,,NTclustered,gi|2496749738|gb|OP673405.1|,3043313,g12670,i0,100,0.207142857142857,30,0,11,0,251,280,35,6,"Jujube closterovirus 1 isolate AKS15-20, complete genome",blastn,58,56.5,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Martellivirales,Closteroviridae,,Jujube closterovirus 1
4011122,PRJNA1069776_S_NODE_20524_length_232_cov_8.444444_g20210_i0,PRJNA1069776,20524,232,8.444444,19.59111008,Pestivirus bovis,3052619,Viruses,Viruses,390,3.87e-104,,NTclustered,gi|1129880601|gb|KX170668.1|,11099,g20210,i0,96.983,99.3189655172414,232,7,100,0,1,232,1010,779,"Bovine viral diarrhea virus 1 isolate V100 NS5B gene, partial cds",blastn,23042,390,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4011378,PRJNA1069776_S_NODE_40704_length_172_cov_0.914729_g40390_i0,PRJNA1069776,40704,172,0.914729,1.57333388,Pestivirus tauri,3052626,Viruses,Viruses,307,2.79e-79,,NTclustered,gi|998226330|gb|KT832820.1|,54315,g40390,i0,98.837,98.2848837209302,172,2,100,0,1,172,11622,11451,"Bovine viral diarrhea virus 2 strain USMARC-60767, complete genome",blastn,16905,307,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
4011538,PRJNA1069776_S_NODE_5884_length_358_cov_2.387302_g5570_i0,PRJNA1069776,5884,358,2.387302,8.54654116,Pestivirus bovis,3052619,Viruses,Viruses,534,2.76e-147,,NTclustered,gi|633265981|gb|KJ541471.1|,11099,g5570,i0,93.575,96.9832402234637,358,23,100,0,1,358,4289,4646,"Bovine viral diarrhea virus 1 isolate GS5, complete genome",blastn,34720,534,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4011585,PRJNA1069776_S_NODE_9504_length_312_cov_8.115242_g9190_i0,PRJNA1069776,9504,312,8.115242,25.31955504,Pestivirus bovis,3052619,Viruses,Viruses,540,5.11e-149,,NTclustered,gi|916370596|gb|KT355592.1|,981676,g9190,i0,98.689,97.6217948717949,305,3,97,1,1,304,8853,9157,"Bovine viral diarrhea virus type 1b strain HP-KY-RK13, complete genome",blastn,30458,540,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
4842737,PRJNA1069776_S_NODE_41224_length_171_cov_1.125000_g40910_i0,PRJNA1069776,41224,171,1.125,1.92375,Pestivirus,11095,Viruses,Viruses,300,4.63e-77,,NTclustered,gi|386285714|gb|JQ418635.1|,54315,g40910,i0,98.246,60.9766081871345,171,3,100,0,1,171,10031,9861,"Bovine viral diarrhea virus 2 isolate 08Q723 polyprotein gene, complete cds",blastn,10427,300,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
5287286,PRJNA1069776_S_NODE_1225_length_618_cov_13.415652_g962_i0,PRJNA1069776,1225,618,13.415652,82.90872936,Pestivirus bovis,3052619,Viruses,Viruses,915,0,,NTclustered,gi|2040746277|gb|MT654137.1|,11099,g962,i0,93.366,96.1003236245955,618,41,100,0,1,618,1640,1023,"Bovine viral diarrhea virus 1 strain 20-8536, complete genome",blastn,59390,915,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5287409,PRJNA1069776_S_NODE_19245_length_239_cov_3.183673_g18931_i0,PRJNA1069776,19245,239,3.183673,7.60897847,Pestivirus bovis,3052619,Viruses,Viruses,372,1.45e-98,,NTclustered,gi|575471150|gb|KF772785.1|,11099,g18931,i0,95.299,99.5983263598326,234,11,98,0,1,234,8124,8357,"Bovine viral diarrhea virus 1 isolate CC13B, complete genome",blastn,23804,372,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
5287412,PRJNA1069776_S_NODE_1945_length_505_cov_13.621212_g1644_i0,PRJNA1069776,1945,505,13.621212,68.7871206,Pestivirus tauri,3052626,Viruses,Viruses,689,0,,NTclustered,gi|1751376243|gb|MK599227.1|,54315,g1644,i0,91.287,99.950495049505,505,44,100,0,1,505,9634,9130,"Bovine viral diarrhea virus 2 strain SD-1 polyprotein gene, complete cds",blastn,50475,689,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
5287887,PRJNA1069776_S_NODE_8025_length_328_cov_4830.382456_g7711_i0,PRJNA1069776,8025,328,4830.382456,15843.65445568,Betacoronavirus pandemicum,3418604,Viruses,Viruses,126,1.79e-24,,NTclustered,gi|2165835030|emb|OV196298.1|,2697049,g7711,i0,96.154,29.0884146341463,78,1,25,2,10,87,75,150,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,9541,126,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
6117757,PRJNA1069776_S_NODE_16905_length_252_cov_13112.430622_g16591_i0,PRJNA1069776,16905,252,13112.430622,33043.32516744,Viruses,10239,Viruses,Viruses,115,2.8700000000000003e-21,,NTclustered,gi|2165832904|emb|OV195202.1|,2697049,g16591,i0,93.59,54.3134920634921,78,3,31,2,8,85,86,161,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,13687,115,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
6117921,PRJNA1069776_S_NODE_5405_length_366_cov_8.083591_g5091_i0,PRJNA1069776,5405,366,8.083591,29.58594306,Pestivirus,11095,Viruses,Viruses,592,1.6599999999999993e-164,,NTclustered,gi|1036031867|gb|AH012705.2|,11099,g5091,i0,96.629,97.0765027322404,356,12,97,0,1,356,4925,5280,"Bovine viral diarrhea virus 1 strain CP8 polyprotein genes, partial cds",blastn,35530,592,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6117934,PRJNA1069776_S_NODE_6765_length_344_cov_8.478405_g6451_i0,PRJNA1069776,6765,344,8.478405,29.1657132,Pestivirus,11095,Viruses,Viruses,568,2.6099999999999992e-157,,NTclustered,gi|2625903273|gb|ON676187.1|,11099,g6451,i0,96.501,99.6220930232558,343,12,99,0,2,344,11493,11151,"Bovine viral diarrhea virus 1 strain Chilgok, complete genome",blastn,34270,568,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6562595,PRJNA1069776_S_NODE_22266_length_224_cov_5.403315_g21952_i0,PRJNA1069776,22266,224,5.403315,12.1034256,Carlavirus latensdianthi,3427766,Viruses,Viruses,54.7,0.006,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g21952,i0,100,0.660714285714286,29,0,13,0,1,29,13,41,"Carnation latent virus isolate KL, complete genome",blastn,148,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
6562844,PRJNA1069776_S_NODE_3986_length_397_cov_15.124294_g3672_i0,PRJNA1069776,3986,397,15.124294,60.04344718,Pestivirus bovis,3052619,Viruses,Viruses,667,0,,NTclustered,gi|1350888790|gb|KY852366.1|,11099,g3672,i0,96.977,99.6146095717884,397,12,100,0,1,397,23,419,"Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds",blastn,39547,667,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
6562985,PRJNA1069776_S_NODE_5266_length_368_cov_28.646154_g4952_i0,PRJNA1069776,5266,368,28.646154,105.41784672,Pestivirus bovis,3052619,Viruses,Viruses,592,1.6699999999999997e-164,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g4952,i0,96.379,97.2527173913043,359,13,98,0,1,359,9801,10159,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,35789,592,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
7837324,PRJNA1069776_S_NODE_29467_length_198_cov_4.741935_g29153_i0,PRJNA1069776,29467,198,4.741935,9.3890313,Carlavirus latensdianthi,3427766,Viruses,Viruses,54.7,0.005,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g29153,i0,100,0.747474747474748,29,0,15,0,170,198,41,13,"Carnation latent virus isolate KL, complete genome",blastn,148,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
9112333,PRJNA1069776_S_NODE_29988_length_197_cov_2.701299_g29674_i0,PRJNA1069776,29988,197,2.701299,5.32155903,Pestivirus bovis,3052619,Viruses,Viruses,305,1.19e-78,,NTclustered,gi|2648477067|gb|OR238997.1|,11099,g29674,i0,94.416,100.055837563452,197,11,100,0,1,197,760,564,"Bovine viral diarrhea virus 1 isolate 125_SL35 envelope glycoprotein E2 gene, partial cds",blastn,19711,305,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
9112557,PRJNA1069776_S_NODE_47708_length_159_cov_4.456897_g47394_i0,PRJNA1069776,47708,159,4.456897,7.08646623,Betacoronavirus pandemicum,3418604,Viruses,Viruses,294,1.98e-75,,NTclustered,gi|2499447400|emb|OX492971.1|,2697049,g47394,i0,100,100,159,0,100,0,1,159,18745,18903,"Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite",blastn,15900,294,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
10387869,PRJNA1069776_S_NODE_19449_length_238_cov_3.133333_g19135_i0,PRJNA1069776,19449,238,3.133333,7.45733254,Pestivirus tauri,3052626,Viruses,Viruses,390,3.99e-104,,NTclustered,gi|1751376243|gb|MK599227.1|,54315,g19135,i0,96.218,99.9747899159664,238,9,100,0,1,238,8744,8981,"Bovine viral diarrhea virus 2 strain SD-1 polyprotein gene, complete cds",blastn,23794,390,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
10388111,PRJNA1069776_S_NODE_37529_length_178_cov_2.844444_g37215_i0,PRJNA1069776,37529,178,2.844444,5.06311032,Jujube closterovirus 1,3043313,Viruses,Viruses,54.7,0.004,,NTclustered,gi|2496749738|gb|OP673405.1|,3043313,g37215,i0,94.286,0.353932584269663,35,2,20,0,1,35,6,40,"Jujube closterovirus 1 isolate AKS15-20, complete genome",blastn,63,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Martellivirales,Closteroviridae,,Jujube closterovirus 1
10388146,PRJNA1069776_S_NODE_409_length_2007_cov_16.252546_g401_i0,PRJNA1069776,409,2007,16.252546,326.18859822,Betacoronavirus pandemicum,3418604,Viruses,Viruses,3701,0,,NTclustered,gi|1854182511|gb|MT605815.1|,2697049,g401,i0,99.95,100.057299451918,2007,1,100,0,1,2007,29838,27832,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome",blastn,200815,3701,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
10388156,PRJNA1069776_S_NODE_42129_length_169_cov_2.436508_g41815_i0,PRJNA1069776,42129,169,2.436508,4.11769852,Betacoronavirus pandemicum,3418604,Viruses,Viruses,313,5.859999999999999e-81,,NTclustered,gi|2028980905|gb|MZ002360.1|,2697049,g41815,i0,100,100,169,0,100,0,1,169,22103,22271,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome",blastn,16900,313,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
10388265,PRJNA1069776_S_NODE_52709_length_152_cov_3.844037_g52395_i0,PRJNA1069776,52709,152,3.844037,5.84293624,Pestivirus bovis,3052619,Viruses,Viruses,215,1.5e-51,,NTclustered,gi|1771880388|emb|LR699803.1|,11099,g52395,i0,92.105,86.4013157894737,152,12,100,0,1,152,11700,11851,"bovine viral diarrhea virus polyprotein gene for polyprotein, Npro, C, E1, E2, p7, NS2, NS3, NS4A, NS4B, NS5A, NS5B region",blastn,13133,215,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
10388357,PRJNA1069776_S_NODE_9529_length_312_cov_4.513011_g9215_i0,PRJNA1069776,9529,312,4.513011,14.08059432,Pestivirus bovis,3052619,Viruses,Viruses,477,4.06e-130,,NTclustered,gi|165292292|dbj|AB359924.1|,11099,g9215,i0,94.231,99.9615384615385,312,18,100,0,1,312,1241,930,"Bovine viral diarrhea virus 1 gene for polyprotein (N-terminal protease, Core, Erns region), partial cds, strain: IS27CP/01",blastn,31188,477,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
11663310,PRJNA1069776_S_NODE_2370_length_470_cov_5.501171_g2058_i0,PRJNA1069776,2370,470,5.501171,25.8555037,Betacoronavirus pandemicum,3418604,Viruses,Viruses,869,0,,NTclustered,gi|2028980905|gb|MZ002360.1|,2697049,g2058,i0,100,100,470,0,100,0,1,470,27700,27231,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome",blastn,47000,869,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
11663506,PRJNA1069776_S_NODE_3690_length_405_cov_15.566298_g3376_i0,PRJNA1069776,3690,405,15.566298,63.0435069,Pestivirus bovis,3052619,Viruses,Viruses,586,8.609999999999997e-163,,NTclustered,gi|77799875|dbj|AB111961.2|,233883,g3376,i0,92.822,99.4543209876543,404,29,99,0,2,405,2052,2455,"Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp",blastn,40279,586,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
11663534,PRJNA1069776_S_NODE_38850_length_175_cov_3.825758_g38536_i0,PRJNA1069776,38850,175,3.825758,6.6950765,Betacoronavirus pandemicum,3418604,Viruses,Viruses,324,2.83e-84,,NTclustered,gi|2028980905|gb|MZ002360.1|,2697049,g38536,i0,100,100,175,0,100,0,1,175,23412,23586,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome",blastn,17500,324,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
11663647,PRJNA1069776_S_NODE_4990_length_373_cov_22.878788_g4676_i0,PRJNA1069776,4990,373,22.878788,85.33787924,Pestivirus bovis,3052619,Viruses,Viruses,573,6.119999999999999e-159,,NTclustered,gi|2086549820|dbj|LC648259.1|,981676,g4676,i0,94.58,99.7855227882037,369,20,99,0,5,373,1347,979,"Bovine viral diarrhea virus 1b BVDV/Shihoro/O_39 gene for structural glycoprotein E2, partial cds",blastn,37220,573,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
12493650,PRJNA1069776_S_NODE_770_length_818_cov_19.920000_g617_i0,PRJNA1069776,770,818,19.92,162.9456,Pestivirus,11095,Viruses,Viruses,1218,0,,NTclustered,gi|2789676|gb|AF041040.1|AF041040,11099,g617,i0,93.529,99.3068459657702,819,51,100,2,1,818,1114,297,"Pestivirus type 1 polyprotein gene, complete cds",blastn,81233,1218,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
12493659,PRJNA1069776_S_NODE_9170_length_315_cov_11.768382_g8856_i0,PRJNA1069776,9170,315,11.768382,37.0704033,Pestivirus,11095,Viruses,Viruses,507,5.24e-139,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g8856,i0,95.847,99.984126984127,313,13,99,0,3,315,4336,4024,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,31495,507,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
12938270,PRJNA1069776_S_NODE_1091_length_653_cov_7.232787_g864_i0,PRJNA1069776,1091,653,7.232787,47.23009911,Betacoronavirus pandemicum,3418604,Viruses,Viruses,1206,0,,NTclustered,gi|2156878052|gb|OL678782.1|,2697049,g864,i0,100,100,653,0,100,0,1,653,26571,27223,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CO-CDPHE-2011114568/2020, complete genome",blastn,65300,1206,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
12938389,PRJNA1069776_S_NODE_1951_length_504_cov_79.845987_g1649_i0,PRJNA1069776,1951,504,79.845987,402.42377448,Pestivirus bovis,3052619,Viruses,Viruses,832,0,,NTclustered,gi|77799875|dbj|AB111961.2|,233883,g1649,i0,96.429,100.813492063492,504,18,100,0,1,504,386,889,"Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp",blastn,50810,832,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
12938522,PRJNA1069776_S_NODE_30571_length_195_cov_3.914474_g30257_i0,PRJNA1069776,30571,195,3.914474,7.6332243,Porcine bastrovirus,2588662,Viruses,Viruses,54.7,0.005,,NTclustered,gi|1682068313|gb|MK387176.1|,2588662,g30257,i0,100,0.292307692307692,29,0,15,0,1,29,13,41,"Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome",blastn,57,54.7,1,Viruses,,Orthornavirae,Pisuviricota,Stelpaviricetes,Stellavirales,Astroviridae,,Porcine bastrovirus
12938874,PRJNA1069776_S_NODE_9691_length_310_cov_7.033708_g9377_i0,PRJNA1069776,9691,310,7.033708,21.8044948,Pestivirus bovis,3052619,Viruses,Viruses,484,2.4099999999999996e-132,,NTclustered,gi|1418359717|dbj|LC068605.1|,11099,g9377,i0,94.839,99.9870967741935,310,16,100,0,1,310,10705,10396,"Bovine viral diarrhea virus 1 genomic RNA, complete genome, strain: No.12_E-",blastn,30996,484,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
13768025,PRJNA1069776_S_NODE_3391_length_416_cov_12.021448_g3077_i0,PRJNA1069776,3391,416,12.021448,50.00922368,Pestivirus,11095,Viruses,Viruses,673,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g3077,i0,95.904,99.9663461538462,415,17,99,0,2,416,5911,5497,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,41586,673,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
14213572,PRJNA1069776_S_NODE_40412_length_172_cov_3.279070_g40098_i0,PRJNA1069776,40412,172,3.27907,5.6400004,Pestivirus bovis,3052619,Viruses,Viruses,268,1.32e-67,,NTclustered,gi|800924330|gb|KP941590.1|,11099,g40098,i0,94.767,78.5058139534884,172,9,100,0,1,172,4444,4273,"Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds",blastn,13503,268,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
15042287,PRJNA1069776_S_NODE_15752_length_259_cov_50.856481_g15438_i0,PRJNA1069776,15752,259,50.856481,131.71828579,Pestivirus,11095,Viruses,Viruses,412,9.39e-111,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g15438,i0,95.367,100.891891891892,259,12,100,0,1,259,1017,759,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,26131,412,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
15487296,PRJNA1069776_S_NODE_19773_length_236_cov_5.347150_g19459_i0,PRJNA1069776,19773,236,5.34715,12.619274,Betacoronavirus pandemicum,3418604,Viruses,Viruses,436,4.999999999999999e-118,,NTclustered,gi|2499447400|emb|OX492971.1|,2697049,g19459,i0,100,100,236,0,100,0,1,236,24311,24076,"Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite",blastn,23600,436,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
15487323,PRJNA1069776_S_NODE_22113_length_225_cov_3.445055_g21799_i0,PRJNA1069776,22113,225,3.445055,7.75137375,Betacoronavirus pandemicum,3418604,Viruses,Viruses,416,6.159999999999998e-112,,NTclustered,gi|2499447400|emb|OX492971.1|,2697049,g21799,i0,100,100,225,0,100,0,1,225,17750,17974,"Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite",blastn,22500,416,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
15487427,PRJNA1069776_S_NODE_29833_length_197_cov_4.272727_g29519_i0,PRJNA1069776,29833,197,4.272727,8.41727219,Pestivirus tauri,3052626,Viruses,Viruses,320,4.24e-83,,NTclustered,gi|346577970|gb|JF714967.1|,54315,g29519,i0,95.939,87.1928934010152,197,8,100,0,1,197,10973,11169,"Bovine viral diarrhea virus 2 strain HLJ-10, complete genome",blastn,17177,320,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
15487455,PRJNA1069776_S_NODE_31553_length_193_cov_1.600000_g31239_i0,PRJNA1069776,31553,193,1.6,3.088,Porcine bastrovirus,2588662,Viruses,Viruses,58.4,3.58e-4,,NTclustered,gi|1682068313|gb|MK387176.1|,2588662,g31239,i0,100,0.305699481865285,31,0,16,0,1,31,13,43,"Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome",blastn,59,58.4,1,Viruses,,Orthornavirae,Pisuviricota,Stelpaviricetes,Stellavirales,Astroviridae,,Porcine bastrovirus
15487649,PRJNA1069776_S_NODE_4793_length_378_cov_4.435821_g4479_i0,PRJNA1069776,4793,378,4.435821,16.76740338,Betacoronavirus pandemicum,3418604,Viruses,Viruses,695,0,,NTclustered,gi|2120308425|gb|OK617576.1|,2697049,g4479,i0,99.735,100,378,1,100,0,1,378,24671,25048,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MO-CDC-ASC210091322/2021 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a), envelope protein (E), and membrane glycoprotein (M) genes, complete cds; ORF6 protein (ORF6) gene, partial cds; ORF7a protein (ORF7a) gene, complete cds; ORF7b (ORF7b) gene, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds",blastn,37800,695,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
15487774,PRJNA1069776_S_NODE_9193_length_315_cov_5.558824_g8879_i0,PRJNA1069776,9193,315,5.558824,17.5102956,Siniperhavirus chuatsi,2956453,Viruses,Viruses,52.8,0.029,,NTclustered,gi|1720077963|gb|MK397811.2|,2527734,g8879,i0,100,0.0888888888888889,28,0,9,0,1,28,53,80,"Micropterus salmoides rhabdovirus strain MSRV-YH01, complete genome",blastn,28,52.8,1,Viruses,,Orthornavirae,Negarnaviricota,Monjiviricetes,Mononegavirales,Rhabdoviridae,Siniperhavirus,Siniperhavirus chuatsi
16317058,PRJNA1069776_S_NODE_13013_length_279_cov_11605.105932_g12699_i0,PRJNA1069776,13013,279,11605.105932,32378.24555028,Viruses,10239,Viruses,Viruses,115,3.23e-21,,NTclustered,gi|2165832904|emb|OV195202.1|,2697049,g12699,i0,93.59,22.9354838709677,78,3,28,2,8,85,86,161,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,6399,115,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
16317091,PRJNA1069776_S_NODE_2033_length_497_cov_71.726872_g1730_i0,PRJNA1069776,2033,497,71.726872,356.48255384,Pestivirus,11095,Viruses,Viruses,819,0,,NTclustered,gi|2634048157|gb|OR611923.3|,11099,g1730,i0,96.378,99.9839034205231,497,18,100,0,1,497,748,1244,"Bovine viral diarrhea virus 1 isolate 18H17 polyprotein gene, complete cds",blastn,49692,819,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
16761441,PRJNA1069776_S_NODE_13654_length_274_cov_56.497835_g13340_i0,PRJNA1069776,13654,274,56.497835,154.8040679,Pestivirus bovis,3052619,Viruses,Viruses,442,1.2799999999999994e-119,,NTclustered,gi|953966940|dbj|LC099927.1|,11099,g13340,i0,97.665,93.1386861313869,257,6,94,0,1,257,282,26,"Bovine viral diarrhea virus 1 genomic RNA, 5' UTR, partial sequence, isolate: Mongolia_3",blastn,25520,442,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
16761447,PRJNA1069776_S_NODE_14294_length_269_cov_6432.787611_g13980_i0,PRJNA1069776,14294,269,6432.787611,17304.19867359,Betacoronavirus pandemicum,3418604,Viruses,Viruses,128,3.9799999999999998e-25,,NTclustered,gi|2165832904|emb|OV195202.1|,2697049,g13980,i0,94.118,27.4200743494424,85,3,32,2,10,94,30108,30026,"Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1",blastn,7376,128,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
16761498,PRJNA1069776_S_NODE_1794_length_523_cov_3.395833_g1496_i0,PRJNA1069776,1794,523,3.395833,17.76020659,Pestivirus bovis,3052619,Viruses,Viruses,795,0,,NTclustered,gi|1129880425|gb|KX170580.1|,11099,g1496,i0,94.073,99.7992351816444,523,31,100,0,1,523,899,377,"Bovine viral diarrhea virus 1 isolate V099 NS4B gene, partial cds",blastn,52195,795,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
16761928,PRJNA1069776_S_NODE_52014_length_153_cov_2.545455_g51700_i0,PRJNA1069776,52014,153,2.545455,3.89454615,Pestivirus bovis,3052619,Viruses,Viruses,267,4.1099999999999994e-67,,NTclustered,gi|323219|gb|M87815.1|BVDMSEQK,11099,g51700,i0,98.039,99.5555555555556,153,3,100,0,1,153,212,60,Bovine viral diarrhea virus mRNA sequence,blastn,15232,267,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
16761989,PRJNA1069776_S_NODE_7474_length_335_cov_16.219178_g7160_i0,PRJNA1069776,7474,335,16.219178,54.3342463,Pestivirus bovis,3052619,Viruses,Viruses,523,5.569999999999998e-144,,NTclustered,gi|1540352923|gb|MH231153.1|,11099,g7160,i0,94.91,99.7462686567164,334,17,99,0,2,335,1031,1364,"Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds",blastn,33415,523,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
18036351,PRJNA1069776_S_NODE_20635_length_232_cov_3.111111_g20321_i0,PRJNA1069776,20635,232,3.111111,7.21777752,Carlavirus latensdianthi,3427766,Viruses,Viruses,54.7,0.006,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g20321,i0,100,0.607758620689655,29,0,13,0,1,29,13,41,"Carnation latent virus isolate KL, complete genome",blastn,141,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
18866125,PRJNA1069776_S_NODE_10015_length_306_cov_50.323194_g9701_i0,PRJNA1069776,10015,306,50.323194,153.98897364,Pestivirus,11095,Viruses,Viruses,516,8.42e-142,,NTclustered,gi|800924330|gb|KP941590.1|,11099,g9701,i0,97.059,99.8725490196078,306,9,100,0,1,306,610,305,"Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds",blastn,30561,516,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
18866149,PRJNA1069776_S_NODE_1255_length_609_cov_11.151943_g991_i0,PRJNA1069776,1255,609,11.151943,67.91533287,Pestivirus,11095,Viruses,Viruses,1037,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g991,i0,97.373,99.9770114942529,609,16,100,0,1,609,10450,11058,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,60886,1037,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
19310263,PRJNA1069776_S_NODE_20556_length_232_cov_5.322751_g20242_i0,PRJNA1069776,20556,232,5.322751,12.34878232,Betacoronavirus pandemicum,3418604,Viruses,Viruses,429,8.2e-116,,NTclustered,gi|2499447400|emb|OX492971.1|,2697049,g20242,i0,100,100,232,0,100,0,1,232,26613,26382,"Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite",blastn,23200,429,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
19310369,PRJNA1069776_S_NODE_27716_length_204_cov_2.913043_g27402_i0,PRJNA1069776,27716,204,2.913043,5.94260772,Pestivirus bovis,3052619,Viruses,Viruses,259,9.77e-65,,NTclustered,gi|642598|gb|L35851.1|BVDP125D,11099,g27402,i0,89.655,10.3627450980392,203,21,99,0,2,204,592,390,"Bovine viral diarrhea virus (strain Oregon) p125 gene, partial cds",blastn,2114,259,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
19310753,PRJNA1069776_S_NODE_8956_length_318_cov_3.690909_g8642_i0,PRJNA1069776,8956,318,3.690909,11.73709062,Pestivirus bovis,3052619,Viruses,Viruses,527,4.06e-145,,NTclustered,gi|1540352923|gb|MH231153.1|,11099,g8642,i0,96.541,99.8207547169811,318,11,100,0,1,318,3981,4298,"Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds",blastn,31743,527,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
20141020,PRJNA1069776_S_NODE_15656_length_260_cov_4.447005_g15342_i0,PRJNA1069776,15656,260,4.447005,11.562213,Pestivirus,11095,Viruses,Viruses,429,9.37e-116,,NTclustered,gi|642598|gb|L35851.1|BVDP125D,11099,g15342,i0,96.525,101.326923076923,259,9,99,0,2,260,2232,2490,"Bovine viral diarrhea virus (strain Oregon) p125 gene, partial cds",blastn,26345,429,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
20585568,PRJNA1069776_S_NODE_13557_length_275_cov_6.073276_g13243_i0,PRJNA1069776,13557,275,6.073276,16.701509,Pestivirus bovis,3052619,Viruses,Viruses,472,1.64e-128,,NTclustered,gi|2858850717|gb|PQ613792.1|,11099,g13243,i0,97.81,99.6036363636364,274,5,99,1,2,275,5454,5182,"Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds",blastn,27391,472,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
20585650,PRJNA1069776_S_NODE_1877_length_512_cov_13.582090_g1577_i0,PRJNA1069776,1877,512,13.582090000000001,69.5403008,Pestivirus bovis,3052619,Viruses,Viruses,761,0,,NTclustered,gi|2666910701|gb|PP213451.1|,981676,g1577,i0,93.542,99.55859375,511,33,99,0,1,511,10097,9587,"Bovine viral diarrhea virus 1b strain BJ-11, complete genome",blastn,50974,761,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
20585683,PRJNA1069776_S_NODE_20617_length_232_cov_3.502646_g20303_i0,PRJNA1069776,20617,232,3.502646,8.12613872,Betacoronavirus pandemicum,3418604,Viruses,Viruses,429,8.2e-116,,NTclustered,gi|1854182511|gb|MT605815.1|,2697049,g20303,i0,100,100,232,0,100,0,1,232,23218,23449,"Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome",blastn,23200,429,1,Viruses,,Orthornavirae,Pisuviricota,Pisoniviricetes,Nidovirales,Coronaviridae,Betacoronavirus,Betacoronavirus pandemicum
20585707,PRJNA1069776_S_NODE_22517_length_223_cov_4.405556_g22203_i0,PRJNA1069776,22517,223,4.405556,9.82438988,Pestivirus bovis,3052619,Viruses,Viruses,337,4.88e-88,,NTclustered,gi|1771880388|emb|LR699803.1|,11099,g22203,i0,94.118,47.3766816143498,221,13,99,0,3,223,1778,1558,"bovine viral diarrhea virus polyprotein gene for polyprotein, Npro, C, E1, E2, p7, NS2, NS3, NS4A, NS4B, NS5A, NS5B region",blastn,10565,337,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
20585714,PRJNA1069776_S_NODE_23057_length_221_cov_3.252809_g22743_i0,PRJNA1069776,23057,221,3.252809,7.18870789,Porcine bastrovirus,2588662,Viruses,Viruses,54.7,0.005,,NTclustered,gi|1682068313|gb|MK387176.1|,2588662,g22743,i0,100,0.257918552036199,29,0,13,0,1,29,13,41,"Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome",blastn,57,54.7,1,Viruses,,Orthornavirae,Pisuviricota,Stelpaviricetes,Stellavirales,Astroviridae,,Porcine bastrovirus
21416833,PRJNA1069776_S_NODE_5597_length_362_cov_18.153605_g5283_i0,PRJNA1069776,5597,362,18.153605,65.7160501,Pestivirus,11095,Viruses,Viruses,592,1.6399999999999999e-164,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g5283,i0,96.133,99.6850828729282,362,14,100,0,1,362,8333,7972,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,36086,592,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
21416836,PRJNA1069776_S_NODE_6137_length_353_cov_40.441935_g5823_i0,PRJNA1069776,6137,353,40.441935,142.76003055,Pestivirus,11095,Viruses,Viruses,619,7.299999999999999e-173,,NTclustered,gi|2618371112|gb|OR753412.1|,11099,g5823,i0,98.3,94.2266288951841,353,6,100,0,1,353,388,36,"Bovine viral diarrhea virus 1 isolate BI-2023, complete genome",blastn,33262,619,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
21861533,PRJNA1069776_S_NODE_23598_length_219_cov_2.937500_g23284_i0,PRJNA1069776,23598,219,2.9375,6.433125,Jujube closterovirus 1,3043313,Viruses,Viruses,56.5,0.001,,NTclustered,gi|2496749738|gb|OP673405.1|,3043313,g23284,i0,100,0.136986301369863,30,0,14,0,1,30,8,37,"Jujube closterovirus 1 isolate AKS15-20, complete genome",blastn,30,56.5,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Martellivirales,Closteroviridae,,Jujube closterovirus 1
21861711,PRJNA1069776_S_NODE_37438_length_178_cov_3.555556_g37124_i0,PRJNA1069776,37438,178,3.555556,6.32888968,Carlavirus latensdianthi,3427766,Viruses,Viruses,54.7,0.004,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g37124,i0,100,0.792134831460674,29,0,16,0,1,29,13,41,"Carnation latent virus isolate KL, complete genome",blastn,141,54.7,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
22691653,PRJNA1069776_S_NODE_8738_length_320_cov_5.480144_g8424_i0,PRJNA1069776,8738,320,5.480144,17.5364608,Pestivirus,11095,Viruses,Viruses,486,6.939999999999998e-133,,NTclustered,gi|3786377|gb|AF039172.1|AF039172,11096,g8424,i0,97.872,85.23125,282,5,88,1,39,320,76,356,Pestivirus type 2 strain BVDV23025 5' untranslated region,blastn,27274,490,0.991836734693878,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus suis
23136849,PRJNA1069776_S_NODE_12279_length_286_cov_3.032922_g11965_i0,PRJNA1069776,12279,286,3.032922,8.67415692,Carlavirus latensdianthi,3427766,Viruses,Viruses,58.4,5.68e-4,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g11965,i0,100,0.108391608391608,31,0,11,0,1,31,15,45,"Carnation latent virus isolate KL, complete genome",blastn,31,58.4,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi
23136854,PRJNA1069776_S_NODE_12519_length_283_cov_9.962500_g12205_i0,PRJNA1069776,12519,283,9.9625,28.193875,Pestivirus bovis,3052619,Viruses,Viruses,411,3.739999999999999e-110,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g12205,i0,98.291,96.8268551236749,234,4,100,0,1,234,10379,10146,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,27402,411,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
23136881,PRJNA1069776_S_NODE_1399_length_579_cov_14.061567_g1120_i0,PRJNA1069776,1399,579,14.061567,81.41647293,Pestivirus bovis,3052619,Viruses,Viruses,900,0,,NTclustered,gi|378753668|gb|JN380088.1|,981676,g1120,i0,95.398,97.8721934369603,565,26,98,0,15,579,9768,9204,"Bovine viral diarrhea virus type 1b strain PJ polyprotein gene, complete cds",blastn,56668,900,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
23137200,PRJNA1069776_S_NODE_37939_length_177_cov_3.291045_g37625_i0,PRJNA1069776,37939,177,3.291045,5.82514965,Pestivirus bovis,3052619,Viruses,Viruses,278,2.27e-70,,NTclustered,gi|2127986428|gb|MW732738.1|,11099,g37625,i0,94.915,99.9491525423729,177,9,100,0,1,177,10939,10763,"Bovine viral diarrhea virus 1 strain PI407, complete genome",blastn,17691,278,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
23137398,PRJNA1069776_S_NODE_6419_length_349_cov_6.542484_g6105_i0,PRJNA1069776,6419,349,6.542484,22.83326916,Pestivirus tauri,3052626,Viruses,Viruses,640,5.529999999999999e-179,,NTclustered,gi|1540352867|gb|MH231125.1|,54315,g6105,i0,99.713,99.8252148997135,349,1,100,0,1,349,4907,4559,"Bovine viral diarrhea virus 2 isolate 2139 polyprotein gene, complete cds",blastn,34839,640,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
23966977,PRJNA1069776_S_NODE_1539_length_558_cov_14.708738_g1252_i0,PRJNA1069776,1539,558,14.708738,82.07475804,Pestivirus,11095,Viruses,Viruses,830,0,,NTclustered,gi|2731951075|gb|PP770551.1|,11099,g1252,i0,96.071,97.3494623655914,509,20,100,0,1,509,10654,10146,"Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome",blastn,54321,830,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
23966980,PRJNA1069776_S_NODE_1599_length_549_cov_78.237154_g1309_i0,PRJNA1069776,1599,549,78.237154,429.52197546,Pestivirus,11095,Viruses,Viruses,926,0,,NTclustered,gi|530291193|gb|KC963967.1|,11099,g1309,i0,97.086,100.897996357013,549,16,100,0,1,549,481,1029,"Bovine viral diarrhea virus 1 isolate 12F004, complete genome",blastn,55393,926,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus bovis
24410391,PRJNA1069776_S_NODE_10840_length_299_cov_2.621094_g10526_i0,PRJNA1069776,10840,299,2.621094,7.83707106,Pestivirus tauri,3052626,Viruses,Viruses,525,1.3599999999999994e-144,,NTclustered,gi|1540352891|gb|MH231137.1|,54315,g10526,i0,98.328,99.4280936454849,299,5,100,0,1,299,3167,3465,"Bovine viral diarrhea virus 2 isolate MadSpl polyprotein gene, complete cds",blastn,29729,525,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
24410420,PRJNA1069776_S_NODE_12560_length_283_cov_4.433333_g12246_i0,PRJNA1069776,12560,283,4.433333,12.54633239,Pestivirus tauri,3052626,Viruses,Viruses,468,2.19e-127,,NTclustered,gi|1751376243|gb|MK599227.1|,54315,g12246,i0,96.466,98.0600706713781,283,10,100,0,1,283,786,504,"Bovine viral diarrhea virus 2 strain SD-1 polyprotein gene, complete cds",blastn,27751,468,1,Viruses,,Orthornavirae,Kitrinoviricota,Flasuviricetes,Amarillovirales,Flaviviridae,Pestivirus,Pestivirus tauri
24410530,PRJNA1069776_S_NODE_20080_length_235_cov_2.109375_g19766_i0,PRJNA1069776,20080,235,2.109375,4.95703125,Carlavirus latensdianthi,3427766,Viruses,Viruses,56.5,0.002,,NTclustered,gi|1995060321|gb|MN450069.1|,12164,g19766,i0,97.059,0.621276595744681,34,0,14,1,202,235,45,13,"Carnation latent virus isolate KL, complete genome",blastn,146,56.5,1,Viruses,,Orthornavirae,Kitrinoviricota,Alsuviricetes,Tymovirales,Betaflexiviridae,Carlavirus,Carlavirus latensdianthi