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viruses_fish_associated_curated

10 rows where tax_species_NTorNR = "Japanese seabream poxvirus"

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tax_species_NTorNR 1

  • Japanese seabream poxvirus · 10 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4749 4749 PRJNA831276_CONTIG_8866|Japanese_seabream_poxvirus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA831276_CONTIG_8866|Japanese_seabream_poxvirus PRJNA831276_CONTIG_8866 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA831276 8866 174 1.744 3.03456 Japanese seabream poxvirus 3389739 Viruses Viruses 62.0 5.91e-10 Japanese seabream poxvirus Non-phage NR PRJNA831276_P_NODE_8866_length_174_cov_1.744000_g8705_i0   BFX55097.1 DNA-directed RNA polymerase 19 kDa subunit [Japanese seabream poxvirus] BFX55097.1 3389739 g8705 i0 47.3 1.931034483 55 29 94.8 0 166 2 113 167 336 62.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   62.0   5.91e-10
6640 6640 PRJNA831276_CONTIG_7118|Japanese_seabream_poxvirus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA831276_CONTIG_7118|Japanese_seabream_poxvirus PRJNA831276_CONTIG_7118 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA831276 7118 197 1.054054 2.07648638 Japanese seabream poxvirus 3389739 Viruses Viruses 72.8 5.18e-13 Japanese seabream poxvirus Non-phage NR PRJNA831276_P_NODE_7118_length_197_cov_1.054054_g6957_i0   BFX55134.1 DNA polymerase [Japanese seabream poxvirus] BFX55134.1 3389739 g6957 i0 53.8 0.989847716 65 30 99.0 0 195 1 328 392 195 72.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   72.8   5.18e-13
6900 6900 PRJNA437204_CONTIG_49739|Japanese_seabream_poxvirus|CLUSTER7_Carp_edema_virus|191|60 Zebrafish jaw poxvirus Novel PRJNA437204_CONTIG_49739|Japanese_seabream_poxvirus PRJNA437204_CONTIG_49739 Carp edema virus 4680 143 36 CLUSTER7_Carp_edema_virus|191|60 PRJNA318414_P_NODE_4_length_21553_cov_145.486805_g3_i0|Carp_edema_virus|NR|0|NA 184 57 PRJNA437204 49739 301 1.342105 4.03973605 Japanese seabream poxvirus 3389739 Viruses Viruses 67.0 2.19e-10 Japanese seabream poxvirus Non-phage NR PRJNA437204_P_NODE_49739_length_301_cov_1.342105_g49440_i0   BFX55092.1 Virion core protein P4a [Japanese seabream poxvirus] BFX55092.1 3389739 g49440 i0 72.7 5.162790698 44 12 43.9 0 12 143 637 680 1554 67.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   67.0   2.19e-10
7152 7152 PRJNA554788_CONTIG_11854|Japanese_seabream_poxvirus|CLUSTER9_Carp_edema_virus|189|53 Zebrafish jaw poxvirus Novel PRJNA554788_CONTIG_11854|Japanese_seabream_poxvirus PRJNA554788_CONTIG_11854 Carp edema virus 4680 143 36 CLUSTER9_Carp_edema_virus|189|53 PRJNA1075480_S_NODE_36_length_9686_cov_68.302923_g23_i0|Carp_edema_virus|NR|9.15e-292|NA 188 53 PRJNA554788 11854 273 1.155 3.15315 Japanese seabream poxvirus 3389739 Viruses Viruses 95.5 1.46e-20 Japanese seabream poxvirus Non-phage NR PRJNA554788_P_NODE_11854_length_273_cov_1.155000_g11830_i0   BFX55063.1 Nucleoside triphosphatase I [Japanese seabream poxvirus] BFX55063.1 3389739 g11830 i0 59.7 1.582417582 72 29 79.1 0 218 3 1 72 432 95.5 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   95.5   1.46e-20
9576 9576 PRJEB2894_CONTIG_87|Japanese_seabream_poxvirus|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJEB2894_CONTIG_87|Japanese_seabream_poxvirus PRJEB2894_CONTIG_87 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJEB2894 87 2454 6.554775 160.8541785 Japanese seabream poxvirus 3389739 Viruses Viruses 84.3 1.93e-12 Japanese seabream poxvirus Non-phage NR PRJEB2894_P_NODE_87_length_2454_cov_6.554775_g77_i0   BFX54982.1 hypothetical protein JSPV_00365 [Japanese seabream poxvirus] BFX54982.1 3389739 g77 i0 29.4 0.237163814 194 132 23.3 3 1925 1353 819 1010 582 84.3 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   84.3   1.93e-12
9578 9578 PRJNA397736_CONTIG_116|Japanese_seabream_poxvirus|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA397736_CONTIG_116|Japanese_seabream_poxvirus PRJNA397736_CONTIG_116 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA397736 116 838 5.532756 46.36449528 Japanese seabream poxvirus 3389739 Viruses Viruses 55.1 0.000211 Japanese seabream poxvirus Non-phage NR PRJNA397736_S_NODE_116_length_838_cov_5.532756_g104_i0   BFX54982.1 hypothetical protein JSPV_00365 [Japanese seabream poxvirus] BFX54982.1 3389739 g104 i0 36.3 0.325775656 91 56 31.9 1 273 7 819 909 273 55.1 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   55.1   0.000211
9579 9579 PRJNA1075480_CONTIG_194|Japanese_seabream_poxvirus|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA1075480_CONTIG_194|Japanese_seabream_poxvirus PRJNA1075480_CONTIG_194 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA1075480 194 4752 119.495191 5678.411476 Japanese seabream poxvirus 3389739 Viruses Viruses 65.9 2.21e-06 Japanese seabream poxvirus Non-phage NR PRJNA1075480_S_NODE_194_length_4752_cov_119.495191_g154_i0   BFX54982.1 hypothetical protein JSPV_00365 [Japanese seabream poxvirus] BFX54982.1 3389739 g154 i0 26.2 0.106060606 168 119 10.4 3 587 93 845 1010 504 65.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   65.9   2.21e-06
9584 9584 PRJNA846701_CONTIG_466|Japanese_seabream_poxvirus|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA846701_CONTIG_466|Japanese_seabream_poxvirus PRJNA846701_CONTIG_466 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA846701 466 983 1.994647 19.60738001 Japanese seabream poxvirus 3389739 Viruses Viruses 80.1 2.33e-12 Japanese seabream poxvirus Non-phage NR PRJNA846701_P_NODE_466_length_983_cov_1.994647_g383_i0   BFX54982.1 hypothetical protein JSPV_00365 [Japanese seabream poxvirus] BFX54982.1 3389739 g383 i0 28.6 0.585961343 192 132 57.7 3 1 567 821 1010 576 80.1 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   80.1   2.33e-12
9585 9585 PRJNA854078_CONTIG_621|Japanese_seabream_poxvirus|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA854078_CONTIG_621|Japanese_seabream_poxvirus PRJNA854078_CONTIG_621 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA854078 621 1213 2.802632 33.99592616 Japanese seabream poxvirus 3389739 Viruses Viruses 84.3 2.63e-13 Japanese seabream poxvirus Non-phage NR PRJNA854078_P_NODE_621_length_1213_cov_2.802632_g496_i0   BFX54982.1 hypothetical protein JSPV_00365 [Japanese seabream poxvirus] BFX54982.1 3389739 g496 i0 29.4 0.479802143 194 132 47.2 3 940 368 819 1010 582 84.3 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   84.3   2.63e-13
9592 9592 PRJNA427078_CONTIG_1604|Japanese_seabream_poxvirus|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA427078_CONTIG_1604|Japanese_seabream_poxvirus PRJNA427078_CONTIG_1604 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA427078 1604 229 1.52381 3.4895249 Japanese seabream poxvirus 3389739 Viruses Viruses 42.4 0.0427 Japanese seabream poxvirus Non-phage NR PRJNA427078_P_NODE_1604_length_229_cov_1.523810_g1567_i0   BFX54982.1 hypothetical protein JSPV_00365 [Japanese seabream poxvirus] BFX54982.1 3389739 g1567 i0 32.8 0.759825328 58 39 76.0 0 227 54 953 1010 174 42.4 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Japanese seabream poxvirus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Japanese seabream poxvirus     Viruses   Viruses   42.4   0.0427

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;