metadata: viruses_fish_associated_curated: 5 rows where tax_species_NTorNR = "Fujian spotted paddle-tail newt calicivirus"

5 rows where tax_species_NTorNR = "Fujian spotted paddle-tail newt calicivirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
9490	9490	PRJNA534016_CONTIG_1366\|Fujian_spotted_paddle-tail_newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA534016_CONTIG_1366\|Fujian_spotted_paddle-tail_newt_calicivirus	PRJNA534016_CONTIG_1366	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA534016	1366	704	1.855784	13.06471936	Fujian spotted paddle-tail newt calicivirus	2116168	Viruses	Viruses	70.1	1.02e-09	Fujian spotted paddle-tail newt calicivirus	Non-phage	NR	PRJNA534016_P_NODE_1366_length_704_cov_1.855784_g1282_i0	AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus]	AVM87224.1	2116168	g1282	i0	33.3	0.613636364	144	83	57.1	5	1	402	43	183	432	70.1	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Fujian spotted paddle-tail newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Fujian spotted paddle-tail newt calicivirus	Viruses	Viruses	70.1	1.02e-09
9498	9498	PRJNA599026_CONTIG_15311\|Fujian_spotted_paddle-tail_newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA599026_CONTIG_15311\|Fujian_spotted_paddle-tail_newt_calicivirus	PRJNA599026_CONTIG_15311	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA599026	15311	258	1.301435	3.3577023	Fujian spotted paddle-tail newt calicivirus	2116168	Viruses	Viruses	53.5	7.22e-06	Fujian spotted paddle-tail newt calicivirus	Non-phage	NR	PRJNA599026_S_NODE_15311_length_258_cov_1.301435_g14855_i0	AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus]	AVM87224.1	2116168	g14855	i0	35.5	1.790697674	76	48	87.2	1	11	235	342	417	462	53.5	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Fujian spotted paddle-tail newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Fujian spotted paddle-tail newt calicivirus	Viruses	Viruses	53.5	7.22e-06
9500	9500	PRJNA1199330_CONTIG_15882\|Fujian_spotted_paddle-tail_newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA1199330_CONTIG_15882\|Fujian_spotted_paddle-tail_newt_calicivirus	PRJNA1199330_CONTIG_15882	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA1199330	15882	513	2.897727	14.86533951	Fujian spotted paddle-tail newt calicivirus	2116168	Viruses	Viruses	68.9	5.06e-10	Fujian spotted paddle-tail newt calicivirus	Non-phage	NR	PRJNA1199330_P_NODE_15882_length_513_cov_2.897727_g15192_i0	AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus]	AVM87224.1	2116168	g15192	i0	31.4	1.005847953	172	101	92.4	7	491	18	34	202	516	68.9	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Fujian spotted paddle-tail newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Fujian spotted paddle-tail newt calicivirus	Viruses	Viruses	68.9	5.06e-10
9517	9517	PRJNA1144090_CONTIG_33203\|Fujian_spotted_paddle-tail_newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA1144090_CONTIG_33203\|Fujian_spotted_paddle-tail_newt_calicivirus	PRJNA1144090_CONTIG_33203	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA1144090	33203	453	4.081579	18.48955287	Fujian spotted paddle-tail newt calicivirus	2116168	Viruses	Viruses	68.2	5.3e-10	Fujian spotted paddle-tail newt calicivirus	Non-phage	NR	PRJNA1144090_P_NODE_33203_length_453_cov_4.081579_g32668_i0	AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus]	AVM87224.1	2116168	g32668	i0	32.4	0.960264901	145	85	89.4	5	34	438	42	183	435	68.2	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Fujian spotted paddle-tail newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Fujian spotted paddle-tail newt calicivirus	Viruses	Viruses	68.2	5.3e-10
9522	9522	PRJNA484127_CONTIG_39772\|Fujian_spotted_paddle-tail_newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA484127_CONTIG_39772\|Fujian_spotted_paddle-tail_newt_calicivirus	PRJNA484127_CONTIG_39772	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA484127	39772	234	4.279503	10.01403702	Fujian spotted paddle-tail newt calicivirus	2116168	Viruses	Viruses	42.4	0.0465	Fujian spotted paddle-tail newt calicivirus	Non-phage	NR	PRJNA484127_P_NODE_39772_length_234_cov_4.279503_g39623_i0	AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus]	AVM87224.1	2116168	g39623	i0	37.8	0.948717949	74	39	89.7	4	211	2	34	104	222	42.4	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Fujian spotted paddle-tail newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Fujian spotted paddle-tail newt calicivirus	Viruses	Viruses	42.4	0.0465

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;