RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where tax_family_NTorNR = "Poxviridae" and tax_species_NTorNR = "Poxvirus rattus41634"

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tax_species_NTorNR 1

  • Poxvirus rattus41634 · 4 ✖

tax_family_NTorNR 1

  • Poxviridae · 4 ✖

clusterLCA_curated 1

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9211 9211 PRJNA893346_CONTIG_21504|Poxvirus_rattus41634|CLUSTER21_Carp_edema_virus|63|38 Zebrafish jaw poxvirus Novel PRJNA893346_CONTIG_21504|Poxvirus_rattus41634 PRJNA893346_CONTIG_21504 Carp edema virus 4680 143 36 CLUSTER21_Carp_edema_virus|63|38 PRJNA1075480_S_NODE_5_length_24120_cov_74.249886_g2_i0|Carp_edema_virus|NR|2.99e-188|NA 60 37 PRJNA893346 21504 332 0.926641 3.07644812 Poxvirus rattus41634 3117304 Viruses Viruses 56.2 2.04e-06 Poxvirus rattus41634 Non-phage NR PRJNA893346_P_NODE_21504_length_332_cov_0.926641_g21015_i0   DBA51229.1 MAG TPA_asm: EnvelopeB22R [Poxvirus rattus41634] DBA51229.1 3117304 g21015 i0 35.5 0.686746988 76 47 66.9 1 224 3 1787 1862 228 56.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Poxvirus rattus41634 Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Poxvirus rattus41634     Viruses   Viruses   56.2   2.04e-06
9247 9247 PRJEB83711_CONTIG_70838|Poxvirus_rattus41634|CLUSTER21_Carp_edema_virus|63|38 Zebrafish jaw poxvirus Novel PRJEB83711_CONTIG_70838|Poxvirus_rattus41634 PRJEB83711_CONTIG_70838 Carp edema virus 4680 143 36 CLUSTER21_Carp_edema_virus|63|38 PRJNA1075480_S_NODE_5_length_24120_cov_74.249886_g2_i0|Carp_edema_virus|NR|2.99e-188|NA 60 37 PRJEB83711 70838 246 0.901734 2.21826564 Poxvirus rattus41634 3117304 Viruses Viruses 50.4 7.55e-05 Poxvirus rattus41634 Non-phage NR PRJEB83711_P_NODE_70838_length_246_cov_0.901734_g70572_i0   DBA51229.1 MAG TPA_asm: EnvelopeB22R [Poxvirus rattus41634] DBA51229.1 3117304 g70572 i0 38.1 0.768292683 63 37 74.4 1 187 5 1787 1849 189 50.4 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Poxvirus rattus41634 Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Poxvirus rattus41634     Viruses   Viruses   50.4   7.55e-05
9595 9595 PRJNA523009_CONTIG_2464|Poxvirus_rattus41634|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA523009_CONTIG_2464|Poxvirus_rattus41634 PRJNA523009_CONTIG_2464 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA523009 2464 359 1.228395 4.40993805 Poxvirus rattus41634 3117304 Viruses Viruses 52.8 4.53e-05 Poxvirus rattus41634 Non-phage NR PRJNA523009_P_NODE_2464_length_359_cov_1.228395_g2257_i0   DBA51229.1 MAG TPA_asm: EnvelopeB22R [Poxvirus rattus41634] DBA51229.1 3117304 g2257 i0 27.8 0.902506964 108 69 90.3 2 32 355 1761 1859 324 52.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Poxvirus rattus41634 Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Poxvirus rattus41634     Viruses   Viruses   52.8   4.53e-05
9596 9596 PRJNA1216901_CONTIG_3524|Poxvirus_rattus41634|CLUSTER27_Carp_edema_virus|44|24 Zebrafish jaw poxvirus Novel PRJNA1216901_CONTIG_3524|Poxvirus_rattus41634 PRJNA1216901_CONTIG_3524 Carp edema virus 4680 143 36 CLUSTER27_Carp_edema_virus|44|24 PRJNA318414_P_NODE_1_length_29597_cov_415.197173_g0_i0|Carp_edema_virus|NR|6.17e-192|NA 43 24 PRJNA1216901 3524 167 1.29661 2.1653387 Poxvirus rattus41634 3117304 Viruses Viruses 45.8 0.0011 Poxvirus rattus41634 Non-phage NR PRJNA1216901_P_NODE_3524_length_167_cov_1.296610_g3460_i0   DBA51229.1 MAG TPA_asm: EnvelopeB22R [Poxvirus rattus41634] DBA51229.1 3117304 g3460 i0 43.2 1.760479042 44 25 79.0 0 13 144 1820 1863 294 45.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Poxvirus rattus41634 Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Poxvirus rattus41634     Viruses   Viruses   45.8   0.0011

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;