RNAquarium Metadata Server
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viruses_fish_associated_curated

7 rows where tax_family_NTorNR = "Picornaviridae" and tax_species_NTorNR = "Ludopivirus agrewhifrogo"

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tax_species_NTorNR 1

  • Ludopivirus agrewhifrogo · 7 ✖

tax_genus_NTorNR 1

tax_family_NTorNR 1

  • Picornaviridae · 7 ✖

clusterLCA_curated 1

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8364 8364 PRJNA641991_CONTIG_1772|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA641991_CONTIG_1772|ludopivirus_A1 PRJNA641991_CONTIG_1772 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA641991 1772 393 2.744186 10.78465098 ludopivirus A1 2079465 Viruses Viruses 73.6 3.62e-12 ludopivirus A1 Non-phage NR PRJNA641991_S_NODE_1772_length_393_cov_2.744186_g1653_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g1653 i0 37.9 0.946564885 124 64 93.1 5 25 390 1912 2024 372 73.6 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   73.6   3.62e-12
8366 8366 PRJNA690124_CONTIG_1914|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA690124_CONTIG_1914|ludopivirus_A1 PRJNA690124_CONTIG_1914 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA690124 1914 1078 2.054726 22.14994628 ludopivirus A1 2079465 Viruses Viruses 65.9 1.68e-07 ludopivirus A1 Non-phage NR PRJNA690124_P_NODE_1914_length_1078_cov_2.054726_g1685_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g1685 i0 27.8 1.486085343 216 123 57.3 9 620 3 1826 2018 1602 65.9 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   65.9   1.68e-07
8382 8382 PRJNA951388_CONTIG_7096|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA951388_CONTIG_7096|ludopivirus_A1 PRJNA951388_CONTIG_7096 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA951388 7096 319 3.621951 11.55402369 ludopivirus A1 2079465 Viruses Viruses 137.0 7.480000000000001e-35 ludopivirus A1 Non-phage NR PRJNA951388_S_NODE_7096_length_319_cov_3.621951_g6969_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g6969 i0 61.2 1.937304075 103 40 96.9 0 6 314 2223 2325 618 137.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   137.0   7.480000000000001e-35
8385 8385 PRJNA453111_CONTIG_8518|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA453111_CONTIG_8518|ludopivirus_A1 PRJNA453111_CONTIG_8518 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA453111 8518 277 1.0 2.77 ludopivirus A1 2079465 Viruses Viruses 122.0 4.3000000000000004e-30 ludopivirus A1 Non-phage NR PRJNA453111_P_NODE_8518_length_277_cov_1.000000_g8426_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g8426 i0 63.3 1.949458484 90 33 97.5 0 271 2 2223 2312 540 122.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   122.0   4.3000000000000004e-30
8386 8386 PRJNA662254_CONTIG_8525|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA662254_CONTIG_8525|ludopivirus_A1 PRJNA662254_CONTIG_8525 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA662254 8525 576 2.037773 11.73757248 ludopivirus A1 2079465 Viruses Viruses 224.0 4.5500000000000005e-64 ludopivirus A1 Non-phage NR PRJNA662254_P_NODE_8525_length_576_cov_2.037773_g7886_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g7886 i0 56.0 8.953125 191 83 99.5 1 574 2 2166 2355 5157 224.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   224.0   4.5500000000000005e-64
8393 8393 PRJNA1200306_CONTIG_14547|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1200306_CONTIG_14547|ludopivirus_A1 PRJNA1200306_CONTIG_14547 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1200306 14547 344 1.667897 5.73756568 ludopivirus A1 2079465 Viruses Viruses 136.0 1.47e-34 ludopivirus A1 Non-phage NR PRJNA1200306_P_NODE_14547_length_344_cov_1.667897_g14370_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g14370 i0 57.0 0.994186047 114 49 99.4 0 1 342 2237 2350 342 136.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   136.0   1.47e-34
8414 8414 PRJNA776830_CONTIG_44541|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA776830_CONTIG_44541|ludopivirus_A1 PRJNA776830_CONTIG_44541 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA776830 44541 245 0.895349 2.19360505 ludopivirus A1 2079465 Viruses Viruses 105.0 3.24e-24 ludopivirus A1 Non-phage NR PRJNA776830_P_NODE_44541_length_245_cov_0.895349_g44276_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g44276 i0 58.8 4.848979592 80 33 98.0 0 4 243 2243 2322 1188 105.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   105.0   3.24e-24

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;