metadata: viruses_fish_associated_curated: 6 rows where tax_family_NTorNR = "Picornaviridae" and tax_species

6 rows where tax_family_NTorNR = "Picornaviridae" and tax_species_NTorNR = "Bat kobuvirus TM003k"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
8355	8355	PRJNA951388_CONTIG_684\|Kobuvirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA951388_CONTIG_684\|Kobuvirus	PRJNA951388_CONTIG_684	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA951388	684	743	4.432836	32.93597148	Kobuvirus	194960	Viruses	Viruses	271.0	4.46e-86	Kobuvirus	Non-phage	NR	PRJNA951388_S_NODE_684_length_743_cov_4.432836_g574_i0	ADI48258.1 3D, partial [Bat kobuvirus TM003k]	ADI48258.1	795373	g574	i0	55.2	2.951547779	239	101	96.5	4	719	3	1	233	2193	272.0	0.996323529	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Bat kobuvirus TM003k	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Kobuvirus	Viruses	Viruses	271.0	4.46e-86
8369	8369	PRJNA1180208_CONTIG_3254\|Bat_kobuvirus_TM\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA1180208_CONTIG_3254\|Bat_kobuvirus_TM	PRJNA1180208_CONTIG_3254	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA1180208	3254	334	1.195402	3.99264268	Bat kobuvirus TM	3128441	Viruses	Viruses	132.0	3.12e-34	Bat kobuvirus TM	Non-phage	NR	PRJNA1180208_P_NODE_3254_length_334_cov_1.195402_g3163_i0	ADI48258.1 3D, partial [Bat kobuvirus TM003k]	ADI48258.1	795373	g3163	i0	57.3	0.988023952	110	46	98.8	1	5	334	98	206	330	132.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Bat kobuvirus TM003k	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Bat kobuvirus TM	Viruses	Viruses	132.0	3.12e-34
8377	8377	PRJNA1263423_CONTIG_4998\|Bat_kobuvirus_TM\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA1263423_CONTIG_4998\|Bat_kobuvirus_TM	PRJNA1263423_CONTIG_4998	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA1263423	4998	247	1.54023	3.8043681	Bat kobuvirus TM	3128441	Viruses	Viruses	107.0	2.71e-25	Bat kobuvirus TM	Non-phage	NR	PRJNA1263423_P_NODE_4998_length_247_cov_1.540230_g4894_i0	ADI48258.1 3D, partial [Bat kobuvirus TM003k]	ADI48258.1	795373	g4894	i0	58.8	2.914979757	80	32	97.2	1	5	244	131	209	720	107.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Bat kobuvirus TM003k	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Bat kobuvirus TM	Viruses	Viruses	107.0	2.71e-25
8405	8405	PRJNA1256832_CONTIG_31002\|Bat_kobuvirus_TM\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA1256832_CONTIG_31002\|Bat_kobuvirus_TM	PRJNA1256832_CONTIG_31002	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA1256832	31002	310	1.738397	5.3890307	Bat kobuvirus TM	3128441	Viruses	Viruses	121.0	1.92e-30	Bat kobuvirus TM	Non-phage	NR	PRJNA1256832_P_NODE_31002_length_310_cov_1.738397_g30776_i0	ADI48258.1 3D, partial [Bat kobuvirus TM003k]	ADI48258.1	795373	g30776	i0	56.9	0.987096774	102	43	98.7	1	3	308	99	199	306	121.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Bat kobuvirus TM003k	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Bat kobuvirus TM	Viruses	Viruses	121.0	1.92e-30
8418	8418	PRJNA870096_CONTIG_55079\|Bat_kobuvirus_TM\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA870096_CONTIG_55079\|Bat_kobuvirus_TM	PRJNA870096_CONTIG_55079	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA870096	55079	237	0.953608	2.26005096	Bat kobuvirus TM	3128441	Viruses	Viruses	104.0	2.33e-24	Bat kobuvirus TM	Non-phage	NR	PRJNA870096_S_NODE_55079_length_237_cov_0.953608_g53415_i0	ADI48258.1 3D, partial [Bat kobuvirus TM003k]	ADI48258.1	795373	g53415	i0	57.1	0.974683544	77	32	97.5	1	2	232	121	196	231	104.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Bat kobuvirus TM003k	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Bat kobuvirus TM	Viruses	Viruses	104.0	2.33e-24
8424	8424	PRJNA565584_CONTIG_149245\|Kobuvirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA565584_CONTIG_149245\|Kobuvirus	PRJNA565584_CONTIG_149245	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA565584	149245	263	1.089474	2.86531662	Kobuvirus	194960	Viruses	Viruses	77.8	1.77e-14	Kobuvirus	Non-phage	NR	PRJNA565584_P_NODE_149245_length_263_cov_1.089474_g148093_i0	ADI48258.1 3D, partial [Bat kobuvirus TM003k]	ADI48258.1	795373	g148093	i0	58.8	2.292775665	51	21	58.2	0	108	260	139	189	603	77.8	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Bat kobuvirus TM003k	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Kobuvirus	Viruses	Viruses	77.8	1.77e-14

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;