viruses_fish_associated_curated
3 rows where tax_family_NTorNR = "Parvoviridae" and tax_species_NTorNR = "Phoenicopterus roseus parvo-like hybrid virus"
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| Link | rowid ▼ | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10250 | 10250 | PRJNA642647_CONTIG_4759|Phoenicopterus_roseus_parvo-like_hybrid_virus|CLUSTER1_Phoenicopterus_roseus_parvo-like_hybrid_virus|2|2 | Phoenicopterus roseus parvo-like hybrid virus | Endogenous or not fish-associated | PRJNA642647_CONTIG_4759|Phoenicopterus_roseus_parvo-like_hybrid_virus | PRJNA642647_CONTIG_4759 | Phoenicopterus roseus parvo-like hybrid virus | 3 | 2 | 2 | CLUSTER1_Phoenicopterus_roseus_parvo-like_hybrid_virus|2|2 | PRJNA800053_P_NODE_14866_length_266_cov_1.585492_g14702_i0|Phoenicopterus_roseus_parvo-like_hybrid_virus|NR|5.02e-11|NA | 2 | 2 | PRJNA642647 | 4759 | 167 | 8.284615 | 13.83530705 | Phoenicopterus roseus parvo-like hybrid virus | 2794530 | Viruses | Viruses | 53.9 | 1.49e-06 | Phoenicopterus roseus parvo-like hybrid virus | Non-phage | NR | PRJNA642647_P_NODE_4759_length_167_cov_8.284615_g4709_i0 | QTE03705.1 MAG: capsid protein, partial [Phoenicopterus roseus parvo-like hybrid virus] | QTE03705.1 | 2794530 | g4709 | i0 | 42.6 | 0.97005988 | 54 | 31 | 97.0 | 0 | 6 | 167 | 268 | 321 | 162 | 53.9 | 1.0 | Viruses | Monodnaviria | Shotokuvirae | Cossaviricota | Quintoviricetes | Piccovirales | Parvoviridae | Phoenicopterus roseus parvo-like hybrid virus | Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Phoenicopterus roseus parvo-like hybrid virus | Phoenicopterus roseus parvo-like hybrid virus | Viruses | Viruses | 53.9 | 1.49e-06 | ||||||||
| 10261 | 10261 | PRJNA800053_CONTIG_14866|Phoenicopterus_roseus_parvo-like_hybrid_virus|CLUSTER1_Phoenicopterus_roseus_parvo-like_hybrid_virus|2|2 | Phoenicopterus roseus parvo-like hybrid virus | Endogenous or not fish-associated | PRJNA800053_CONTIG_14866|Phoenicopterus_roseus_parvo-like_hybrid_virus | PRJNA800053_CONTIG_14866 | Phoenicopterus roseus parvo-like hybrid virus | 3 | 2 | 2 | CLUSTER1_Phoenicopterus_roseus_parvo-like_hybrid_virus|2|2 | PRJNA800053_P_NODE_14866_length_266_cov_1.585492_g14702_i0|Phoenicopterus_roseus_parvo-like_hybrid_virus|NR|5.02e-11|NA | 2 | 2 | PRJNA800053 | 14866 | 266 | 1.585492 | 4.21740872 | Phoenicopterus roseus parvo-like hybrid virus | 2794530 | Viruses | Viruses | 68.2 | 5.02e-11 | Phoenicopterus roseus parvo-like hybrid virus | Non-phage | NR | PRJNA800053_P_NODE_14866_length_266_cov_1.585492_g14702_i0 | QTE03705.1 MAG: capsid protein, partial [Phoenicopterus roseus parvo-like hybrid virus] | QTE03705.1 | 2794530 | g14702 | i0 | 39.5 | 0.969924812 | 86 | 52 | 97.0 | 0 | 5 | 262 | 273 | 358 | 258 | 68.2 | 1.0 | Viruses | Monodnaviria | Shotokuvirae | Cossaviricota | Quintoviricetes | Piccovirales | Parvoviridae | Phoenicopterus roseus parvo-like hybrid virus | Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Phoenicopterus roseus parvo-like hybrid virus | Phoenicopterus roseus parvo-like hybrid virus | Viruses | Viruses | 68.2 | 5.02e-11 | ||||||||
| 10386 | 10386 | PRJNA642647_CONTIG_6259|Phoenicopterus_roseus_parvo-like_hybrid_virus|CLUSTER2_Phoenicopterus_roseus_parvo-like_hybrid_virus|1|1 | Phoenicopterus roseus parvo-like hybrid virus | Endogenous or not fish-associated | PRJNA642647_CONTIG_6259|Phoenicopterus_roseus_parvo-like_hybrid_virus | PRJNA642647_CONTIG_6259 | Phoenicopterus roseus parvo-like hybrid virus | 3 | 2 | 2 | CLUSTER2_Phoenicopterus_roseus_parvo-like_hybrid_virus|1|1 | PRJNA642647_P_NODE_6259_length_153_cov_0.982759_g6209_i0|Phoenicopterus_roseus_parvo-like_hybrid_virus|NR|0.0147|NA | 1 | 1 | PRJNA642647 | 6259 | 153 | 0.982759 | 1.50362127 | Phoenicopterus roseus parvo-like hybrid virus | 2794530 | Viruses | Viruses | 42.4 | 0.0147 | Phoenicopterus roseus parvo-like hybrid virus | Non-phage | NR | PRJNA642647_P_NODE_6259_length_153_cov_0.982759_g6209_i0 | QTE03705.1 MAG: capsid protein, partial [Phoenicopterus roseus parvo-like hybrid virus] | QTE03705.1 | 2794530 | g6209 | i0 | 46.7 | 0.882352941 | 45 | 24 | 88.2 | 0 | 149 | 15 | 162 | 206 | 135 | 42.4 | 1.0 | Viruses | Monodnaviria | Shotokuvirae | Cossaviricota | Quintoviricetes | Piccovirales | Parvoviridae | Phoenicopterus roseus parvo-like hybrid virus | Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Phoenicopterus roseus parvo-like hybrid virus | Phoenicopterus roseus parvo-like hybrid virus | Viruses | Viruses | 42.4 | 0.0147 |
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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);; CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);; CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);; CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);; CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);; CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);; CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;