RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where tax_family_NTorNR = "Iridoviridae", tax_genus_NTorNR = "Ranavirus" and tax_species_NTorNR = "Ranavirus rana1"

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bioproject 2

tax_species_NTorNR 1

  • Ranavirus rana1 · 2 ✖

tax_genus_NTorNR 1

  • Ranavirus · 2 ✖

tax_family_NTorNR 1

  • Iridoviridae · 2 ✖

clusterLCA_curated 1

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10189 10189 PRJNA704066_CONTIG_5489|Ranavirus|CLUSTER3_Ranavirus|4|2 Largemouth bass virus Known PRJNA704066_CONTIG_5489|Ranavirus PRJNA704066_CONTIG_5489 Ranavirus 151 4 43 CLUSTER3_Ranavirus|4|2 OM927978_1_Frog_virus_3_isolate_WVL20057_3_complete_genome 4 2 PRJNA704066 5489 488 1.113253 5.43267464 Ranavirus 10492 Viruses Viruses 344.0 7.009999999999999e-90 Ranavirus Non-phage NTclustered PRJNA704066_P_NODE_5489_length_488_cov_1.113253_g5363_i0   Frog virus 3 isolate WVL20057-3, complete genome gi|2414123670|gb|OM927978.1| 10493 g5363 i0 80.252 41.89344262 476 79 99.0 12 4 476 65051 65514 20444 344.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Megaviricetes Pimascovirales Iridoviridae Ranavirus Ranavirus rana1 Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Megaviricetes;Pimascovirales;Iridoviridae;Ranavirus;Largemouth bass virus Ranavirus Aquarana catesbeiana gi|2414123670|gb|OM927978.1| Viruses Chordata Viruses Chordata 344.0 237.0 7.009999999999999e-90 1.16e-76
10478 10478 PRJNA857143_CONTIG_79387|Ranavirus|CLUSTER43_Ranavirus|1|1 Largemouth bass virus Known PRJNA857143_CONTIG_79387|Ranavirus PRJNA857143_CONTIG_79387 Ranavirus 151 4 43 CLUSTER43_Ranavirus|1|1 PRJNA857143_S_NODE_79387_length_339_cov_3.973684_g78294_i0|Ranavirus|NR|0.012|NA 1 1 PRJNA857143 79387 339 3.973684 13.47078876 Ranavirus 10492 Viruses Viruses 45.4 0.012 Ranavirus Non-phage NR PRJNA857143_S_NODE_79387_length_339_cov_3.973684_g78294_i0   QKO01790.1 hypothetical protein [Frog virus 3] QKO01790.1 10493 g78294 i0 50.0 6.407079646 42 21 37.2 0 181 56 389 430 2172 45.4 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Megaviricetes Pimascovirales Iridoviridae Ranavirus Ranavirus rana1 Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Megaviricetes;Pimascovirales;Iridoviridae;Ranavirus;Largemouth bass virus   Ranavirus     Viruses   Viruses   45.4   0.012

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;