RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where tax_family_NTorNR = "Chuviridae" and tax_species_NTorNR = "Piscichuvirus lycodontis"

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tax_species_NTorNR 1

  • Piscichuvirus lycodontis · 4 ✖

tax_genus_NTorNR 1

tax_family_NTorNR 1

  • Chuviridae · 4 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8048 8048 PRJNA1129168_CONTIG_4095|Piscichuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA1129168_CONTIG_4095|Piscichuvirus PRJNA1129168_CONTIG_4095 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA1129168 4095 217 1.074713 2.33212721 Piscichuvirus 2842963 Viruses Viruses 47.8 0.000453 Piscichuvirus Non-phage NR PRJNA1129168_S_NODE_4095_length_217_cov_1.074713_g4057_i0   YP_010797600.1 L protein [Guangdong red-banded snake chuvirus-like virus] YP_010797600.1 2116490 g4057 i0 60.0 1.451612903 35 14 48.4 0 212 108 197 231 315 48.1 0.993762994 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus lycodontis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   Piscichuvirus     Viruses   Viruses   47.8   0.000453
9120 9120 PRJNA686149_CONTIG_1819|Guangdong_red-banded_snake_chuvirus-like_virus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA686149_CONTIG_1819|Guangdong_red-banded_snake_chuvirus-like_virus PRJNA686149_CONTIG_1819 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA686149 1819 426 1.758621 7.49172546 Guangdong red-banded snake chuvirus-like virus 2116490 Viruses Viruses 93.2 6.97e-19 Guangdong red-banded snake chuvirus-like virus Non-phage NR PRJNA686149_P_NODE_1819_length_426_cov_1.758621_g1669_i0   YP_010797600.1 L protein [Guangdong red-banded snake chuvirus-like virus] YP_010797600.1 2116490 g1669 i0 38.5 1.845070423 130 79 90.8 1 418 32 1 130 786 93.2 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus lycodontis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Guangdong red-banded snake chuvirus-like virus     Viruses   Viruses   93.2   6.97e-19
9159 9159 PRJNA371613_CONTIG_6203|Guangdong_red-banded_snake_chuvirus-like_virus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA371613_CONTIG_6203|Guangdong_red-banded_snake_chuvirus-like_virus PRJNA371613_CONTIG_6203 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA371613 6203 186 1.281879 2.38429494 Guangdong red-banded snake chuvirus-like virus 2116490 Viruses Viruses 48.1 0.000227 Guangdong red-banded snake chuvirus-like virus Non-phage NR PRJNA371613_P_NODE_6203_length_186_cov_1.281879_g6027_i0   YP_010797600.1 L protein [Guangdong red-banded snake chuvirus-like virus] YP_010797600.1 2116490 g6027 i0 31.7 0.967741935 60 41 96.8 0 7 186 54 113 180 48.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus lycodontis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Guangdong red-banded snake chuvirus-like virus     Viruses   Viruses   48.1   0.000227
9161 9161 PRJNA1174770_CONTIG_6549|Guangdong_red-banded_snake_chuvirus-like_virus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA1174770_CONTIG_6549|Guangdong_red-banded_snake_chuvirus-like_virus PRJNA1174770_CONTIG_6549 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA1174770 6549 183 1.895522 3.46880526 Guangdong red-banded snake chuvirus-like virus 2116490 Viruses Viruses 45.1 0.00257 Guangdong red-banded snake chuvirus-like virus Non-phage NR PRJNA1174770_P_NODE_6549_length_183_cov_1.895522_g6460_i0   YP_010797600.1 L protein [Guangdong red-banded snake chuvirus-like virus] YP_010797600.1 2116490 g6460 i0 31.7 0.983606557 60 41 98.4 0 181 2 71 130 180 45.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus lycodontis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Guangdong red-banded snake chuvirus-like virus     Viruses   Viruses   45.1   0.00257

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;