RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where clusterLCA_curated = "Zebrafish gut calicivirus" and tax_species_NTorNR = "Newt calicivirus"

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tax_species_NTorNR 1

  • Newt calicivirus · 4 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish gut calicivirus · 4 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9504 9504 PRJNA448207_CONTIG_19861|Newt_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA448207_CONTIG_19861|Newt_calicivirus PRJNA448207_CONTIG_19861 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA448207 19861 288 2.139535 6.1618608 Newt calicivirus 2961777 Viruses Viruses 134.0 6.19e-34 Newt calicivirus Non-phage NR PRJNA448207_P_NODE_19861_length_288_cov_2.139535_g19698_i0   DAZ91097.1 TPA_asm: nonstructural protein, partial [Newt calicivirus] DAZ91097.1 2961777 g19698 i0 63.5 2.0 96 35 100.0 0 1 288 1861 1956 576 134.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Newt calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Newt calicivirus     Viruses   Viruses   134.0   6.19e-34
9513 9513 PRJNA599026_CONTIG_26953|Newt_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA599026_CONTIG_26953|Newt_calicivirus PRJNA599026_CONTIG_26953 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA599026 26953 209 2.11875 4.4281875 Newt calicivirus 2961777 Viruses Viruses 101.0 5.969999999999999e-23 Newt calicivirus Non-phage NR PRJNA599026_S_NODE_26953_length_209_cov_2.118750_g26497_i0   DAZ91097.1 TPA_asm: nonstructural protein, partial [Newt calicivirus] DAZ91097.1 2961777 g26497 i0 59.4 0.990430622 69 28 99.0 0 1 207 1796 1864 207 101.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Newt calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Newt calicivirus     Viruses   Viruses   101.0   5.969999999999999e-23
9515 9515 PRJNA1199330_CONTIG_27683|Newt_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1199330_CONTIG_27683|Newt_calicivirus PRJNA1199330_CONTIG_27683 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1199330 27683 392 0.968652 3.79711584 Newt calicivirus 2961777 Viruses Viruses 184.0 7.470000000000001e-51 Newt calicivirus Non-phage NR PRJNA1199330_P_NODE_27683_length_392_cov_0.968652_g26987_i0   DAZ91097.1 TPA_asm: nonstructural protein, partial [Newt calicivirus] DAZ91097.1 2961777 g26987 i0 62.9 3.015306122 132 47 99.5 1 3 392 1784 1915 1182 184.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Newt calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Newt calicivirus     Viruses   Viruses   184.0   7.470000000000001e-51
9527 9527 PRJNA508758_CONTIG_88359|Newt_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA508758_CONTIG_88359|Newt_calicivirus PRJNA508758_CONTIG_88359 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA508758 88359 241 0.916667 2.20916747 Newt calicivirus 2961777 Viruses Viruses 120.0 1.2300000000000001e-29 Newt calicivirus Non-phage NR PRJNA508758_P_NODE_88359_length_241_cov_0.916667_g87311_i0   DAZ91097.1 TPA_asm: nonstructural protein, partial [Newt calicivirus] DAZ91097.1 2961777 g87311 i0 62.5 0.995850622 80 30 99.6 0 241 2 1792 1871 240 120.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Newt calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Newt calicivirus     Viruses   Viruses   120.0   1.2300000000000001e-29

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;