metadata: viruses_fish_associated_curated: 2 rows where clusterLCA_curated = "Zebrafish gut calicivirus" and tax_genus

2 rows where clusterLCA_curated = "Zebrafish gut calicivirus" and tax_genus_NTorNR = "Salovirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9493	9493	PRJNA595113_CONTIG_3972\|Salovirus_sp.\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA595113_CONTIG_3972\|Salovirus_sp.	PRJNA595113_CONTIG_3972	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA595113	3972	329	2.185714	7.19099906	Salovirus sp.	2809835	Viruses	Viruses	60.5	6.42e-08	Salovirus sp.	Non-phage	NR	PRJNA595113_S_NODE_3972_length_329_cov_2.185714_g3825_i0		WRW35011.1 polyprotein [Salovirus sp.]	WRW35011.1	2809835	g3825	i0	45.8	1.541033435	72	39	65.7	0	1	216	2083	2154	507	60.5	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Salovirus	Salovirus sp.	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus		Salovirus sp.			Viruses		Viruses		60.5		6.42e-08
9523	9523	PRJNA1084193_CONTIG_55875\|Salovirus_sp.\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA1084193_CONTIG_55875\|Salovirus_sp.	PRJNA1084193_CONTIG_55875	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA1084193	55875	304	1.164502	3.54008608	Salovirus sp.	2809835	Viruses	Viruses	45.8	0.00667	Salovirus sp.	Non-phage	NR	PRJNA1084193_P_NODE_55875_length_304_cov_1.164502_g55181_i0		WRW35011.1 polyprotein [Salovirus sp.]	WRW35011.1	2809835	g55181	i0	41.9	0.611842105	62	36	61.2	0	303	118	2093	2154	186	45.8	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Salovirus	Salovirus sp.	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus		Salovirus sp.			Viruses		Viruses		45.8		0.00667

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;