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viruses_fish_associated_curated

7 rows where clusterLCA_curated = "Salarius guttatus piscichuvirus", tax_family_NTorNR = "Chuviridae" and tax_species_NTorNR = "African cichlid piscichuvirus"

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tax_species_NTorNR 1

  • African cichlid piscichuvirus · 7 ✖

tax_genus_NTorNR 1

tax_family_NTorNR 1

  • Chuviridae · 7 ✖

clusterLCA_curated 1

  • Salarius guttatus piscichuvirus · 7 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9127 9127 PRJNA529645_CONTIG_2381|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA529645_CONTIG_2381|African_cichlid_piscichuvirus PRJNA529645_CONTIG_2381 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA529645 2381 297 7.443548 22.10733756 African cichlid piscichuvirus 3065075 Viruses Viruses 57.4 5.2e-07 African cichlid piscichuvirus Non-phage NR PRJNA529645_P_NODE_2381_length_297_cov_7.443548_g2281_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g2281 i0 36.0 0.898989899 89 54 86.9 2 260 3 45 133 267 57.4 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   57.4   5.2e-07
9152 9152 PRJNA438111_CONTIG_5127|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA438111_CONTIG_5127|African_cichlid_piscichuvirus PRJNA438111_CONTIG_5127 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA438111 5127 436 2.486486 10.84107896 African cichlid piscichuvirus 3065075 Viruses Viruses 99.4 5.65e-21 African cichlid piscichuvirus Non-phage NR PRJNA438111_P_NODE_5127_length_436_cov_2.486486_g4559_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g4559 i0 42.0 1.651376147 119 69 81.9 0 421 65 97 215 720 99.4 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   99.4   5.65e-21
9172 9172 PRJNA644883_CONTIG_9211|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA644883_CONTIG_9211|African_cichlid_piscichuvirus PRJNA644883_CONTIG_9211 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA644883 9211 215 1.228916 2.6421694 African cichlid piscichuvirus 3065075 Viruses Viruses 43.9 0.0104 African cichlid piscichuvirus Non-phage NR PRJNA644883_S_NODE_9211_length_215_cov_1.228916_g9120_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g9120 i0 40.6 0.893023256 64 35 85.1 2 33 215 45 108 192 43.9 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   43.9   0.0104
9186 9186 PRJNA1114366_CONTIG_12869|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA1114366_CONTIG_12869|African_cichlid_piscichuvirus PRJNA1114366_CONTIG_12869 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA1114366 12869 302 1.344978 4.06183356 African cichlid piscichuvirus 3065075 Viruses Viruses 58.2 3e-07 African cichlid piscichuvirus Non-phage NR PRJNA1114366_P_NODE_12869_length_302_cov_1.344978_g12661_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g12661 i0 35.9 0.913907285 92 56 88.4 2 34 300 45 136 276 58.2 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   58.2   3e-07
9229 9229 PRJNA489308_CONTIG_38064|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA489308_CONTIG_38064|African_cichlid_piscichuvirus PRJNA489308_CONTIG_38064 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA489308 38064 242 0.911243 2.20520806 African cichlid piscichuvirus 3065075 Viruses Viruses 72.8 9.8e-13 African cichlid piscichuvirus Non-phage NR PRJNA489308_P_NODE_38064_length_242_cov_0.911243_g37988_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g37988 i0 43.0 0.979338843 79 45 97.9 0 238 2 132 210 237 72.8 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   72.8   9.8e-13
9231 9231 PRJNA841653_CONTIG_38514|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA841653_CONTIG_38514|African_cichlid_piscichuvirus PRJNA841653_CONTIG_38514 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA841653 38514 266 0.839378 2.23274548 African cichlid piscichuvirus 3065075 Viruses Viruses 79.3 6.77e-15 African cichlid piscichuvirus Non-phage NR PRJNA841653_P_NODE_38514_length_266_cov_0.839378_g37840_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g37840 i0 43.5 0.958646617 85 48 95.9 0 255 1 129 213 255 79.3 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   79.3   6.77e-15
9248 9248 PRJNA533623_CONTIG_76496|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA533623_CONTIG_76496|African_cichlid_piscichuvirus PRJNA533623_CONTIG_76496 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA533623 76496 204 0.713287 1.45510548 African cichlid piscichuvirus 3065075 Viruses Viruses 50.1 5.85e-05 African cichlid piscichuvirus Non-phage NR PRJNA533623_P_NODE_76496_length_204_cov_0.713287_g74715_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g74715 i0 40.6 1.014705882 69 38 97.1 2 200 3 45 113 207 50.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   50.1   5.85e-05

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;