metadata: viruses_fish_associated_curated: 6 rows where bioproject = "PRJNA999234"

6 rows where bioproject = "PRJNA999234"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
2990	2990	PRJNA999234_CONTIG_18550\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA999234_CONTIG_18550\|Zebrafish_picornavirus_2	PRJNA999234_CONTIG_18550	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA999234	18550	251	2.9375	7.373125	Zebrafish picornavirus 2	3063761	Viruses	Viruses	340.0	4.33e-89	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA999234_S_NODE_18550_length_251_cov_2.937500_g17978_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g17978	i0	90.837	1.0	251	23	100.0	1	251	6736	6986	251	340.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Zebrafish picornavirus 2	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	340.0	173.0	4.33e-89	6.249999999999999e-48
5376	5376	PRJNA999234_CONTIG_11175\|Carp_edema_virus\|CLUSTER2_Carp_edema_virus\|553\|75	Zebrafish jaw poxvirus	Novel	PRJNA999234_CONTIG_11175\|Carp_edema_virus	PRJNA999234_CONTIG_11175	Carp edema virus	4680	143	36	CLUSTER2_Carp_edema_virus\|553\|75	LC613089_1_Carp_edema_virus_FTI2020_DNA_complete_genome	552	75	PRJNA999234	11175	311	2.246269	6.98589659	Carp edema virus	1653087	Viruses	Viruses	75.9	1.19e-13	Carp edema virus	Non-phage	NR	PRJNA999234_S_NODE_11175_length_311_cov_2.246269_g10603_i0	BCT22728.1 DNA topoisomerase I [Carp edema virus]	BCT22728.1	1653087	g10603	i0	55.9	0.569131833	59	26	56.9	134	310	1	59	177	75.9	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Pokkesviricetes	Chitovirales	Poxviridae	Carp edema virus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus		Carp edema virus			Viruses		Viruses		75.9		1.19e-13
7604	7604	PRJNA999234_CONTIG_31479\|Carp_edema_virus\|CLUSTER11_Carp_edema_virus\|185\|63	Zebrafish jaw poxvirus	Novel	PRJNA999234_CONTIG_31479\|Carp_edema_virus	PRJNA999234_CONTIG_31479	Carp edema virus	4680	143	36	CLUSTER11_Carp_edema_virus\|185\|63	PRJNA318414_P_NODE_13_length_11789_cov_179.829762_g10_i0\|Carp_edema_virus\|NR\|4.62999999998593e-293\|NA	184	63	PRJNA999234	31479	203	1.5	3.045	Carp edema virus	1653087	Viruses	Viruses	93.6	8.07e-21	Carp edema virus	Non-phage	NR	PRJNA999234_S_NODE_31479_length_203_cov_1.500000_g30907_i0	BCT22728.1 DNA topoisomerase I [Carp edema virus]	BCT22728.1	1653087	g30907	i0	63.1	0.960591133	65	24	96.1	198	4	257	321	195	93.6	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Pokkesviricetes	Chitovirales	Poxviridae	Carp edema virus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus		Carp edema virus			Viruses		Viruses		93.6		8.07e-21
9406	9406	PRJNA999234_CONTIG_48635\|Pimephales_minnow_adintovirus\|CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJNA999234_CONTIG_48635\|Pimephales_minnow_adintovirus	PRJNA999234_CONTIG_48635	Pimephales minnow adintovirus	168	104	20	CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	PRJNA551453_P_NODE_4881_length_284_cov_1.883117_g4799_i0\|Pimephales_minnow_adintovirus\|NR\|1.25e-07\|NA	52	52	PRJNA999234	48635	171	16.273438	27.82757898	Pimephales minnow adintovirus	2609864	Viruses	Viruses	56.2	1.53e-07	Pimephales minnow adintovirus	Non-phage	NR	PRJNA999234_S_NODE_48635_length_171_cov_16.273438_g48063_i0	DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus]	DAC81394.1	2609864	g48063	i0	68.6	0.614035088	35	11	61.4	65	169	7	41	105	56.2	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus		Pimephales minnow adintovirus			Viruses		Viruses		56.2		1.53e-07
9995	9995	PRJNA999234_CONTIG_63844\|Adintovirus_pavo15764\|CLUSTER1_Adintovirus_anguilla1\|13\|12	Adintovirus anguilla10665	Endogenous or not fish-associated	PRJNA999234_CONTIG_63844\|Adintovirus_pavo15764	PRJNA999234_CONTIG_63844	Adintovirus anguilla1	34	19	10	CLUSTER1_Adintovirus_anguilla1\|13\|12	PRJNA1034995_S_NODE_18603_length_409_cov_23.456284_g18448_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|1.59e-05\|NA	13	12	PRJNA999234	63844	155	1.571429	2.43571495	Adintovirus pavo15764	3115938	Viruses	Viruses	42.4	0.0149	Adintovirus pavo15764	Non-phage	NR	PRJNA999234_S_NODE_63844_length_155_cov_1.571429_g63272_i0	DBA50334.1 MAG TPA_asm: Penton [Adintovirus pavo15764]	DBA50334.1	3115938	g63272	i0	78.3	1.374193548	23	5	44.5	153	85	234	256	213	42.4	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Adintovirus pavo15764	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665		Adintovirus pavo15764			Viruses		Viruses		42.4		0.0149
10146	10146	PRJNA999234_CONTIG_47550\|Astyanax_tetra_cavefish_adintovirus\|CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA999234_CONTIG_47550\|Astyanax_tetra_cavefish_adintovirus	PRJNA999234_CONTIG_47550	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	PRJNA1150539_S_NODE_13470_length_412_cov_4.790560_g12875_i0\|Polintoviricetes\|NR\|4.65e-24\|NA	7	6	PRJNA999234	47550	173	1.807692	3.12730716	Astyanax tetra cavefish adintovirus	2609866	Viruses	Viruses	96.3	7.269999999999999e-23	Astyanax tetra cavefish adintovirus	Non-phage	NR	PRJNA999234_S_NODE_47550_length_173_cov_1.807692_g46978_i0	DAC81259.1 TPA_asm: FtsK [Astyanax tetra cavefish adintovirus]	DAC81259.1	2609866	g46978	i0	81.8	1.89017341	55	10	95.4	1	165	115	169	327	96.3	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Astyanax tetra cavefish adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Astyanax tetra cavefish adintovirus			Viruses		Viruses		96.3		7.269999999999999e-23

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;