metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA970658" and clusterLCA_curated = "Astyanax tetra cavefish adintovirus"

2 rows where bioproject = "PRJNA970658" and clusterLCA_curated = "Astyanax tetra cavefish adintovirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10162	10162	PRJNA970658_CONTIG_21207\|Larimichthys_croaker_adintovirus\|CLUSTER2_Astyanax_tetra_cavefish_adintovirus\|6\|5	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA970658_CONTIG_21207\|Larimichthys_croaker_adintovirus	PRJNA970658_CONTIG_21207	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER2_Astyanax_tetra_cavefish_adintovirus\|6\|5	PRJNA1034995_S_NODE_12562_length_616_cov_22.815009_g12451_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|1.35e-05\|NA	6	5	PRJNA970658	21207	253	1.511111	3.82311083	Larimichthys croaker adintovirus	2609857	Viruses	Viruses	55.1	1.81e-06	Larimichthys croaker adintovirus	Non-phage	NR	PRJNA970658_P_NODE_21207_length_253_cov_1.511111_g20965_i0		DAC81309.1 TPA_asm: integrase [Larimichthys croaker adintovirus]	DAC81309.1	2609857	g20965	i0	57.5	0.996047431	40	17	47.4	0	220	101	320	359	252	55.1	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Larimichthys croaker adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Larimichthys croaker adintovirus			Viruses		Viruses		55.1		1.81e-06
10219	10219	PRJNA970658_CONTIG_30532\|Astyanax_tetra_cavefish_adintovirus\|CLUSTER3_Astyanax_tetra_cavefish_adintovirus\|3\|3	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA970658_CONTIG_30532\|Astyanax_tetra_cavefish_adintovirus	PRJNA970658_CONTIG_30532	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER3_Astyanax_tetra_cavefish_adintovirus\|3\|3	PRJNA1150539_S_NODE_33506_length_344_cov_2.450185_g32910_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|1.21e-43\|NA	2	2	PRJNA970658	30532	245	0.883721	2.16511645	Astyanax tetra cavefish adintovirus	2609866	Viruses	Viruses	72.0	1.48e-12	Astyanax tetra cavefish adintovirus	Non-phage	NR	PRJNA970658_P_NODE_30532_length_245_cov_0.883721_g30290_i0		DAC81252.1 TPA_asm: integrase [Astyanax tetra cavefish adintovirus]	DAC81252.1	2609866	g30290	i0	64.2	1.236734694	53	19	64.9	0	242	84	192	244	303	72.0	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Astyanax tetra cavefish adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Astyanax tetra cavefish adintovirus			Viruses		Viruses		72.0		1.48e-12

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;