RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA902840"

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tax_family_NTorNR 2

tax_genus_NTorNR 1

bioproject 1

  • PRJNA902840 · 3 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
7190 7190 PRJNA902840_CONTIG_17589|Carp_edema_virus|CLUSTER9_Carp_edema_virus|189|53 Zebrafish jaw poxvirus Novel PRJNA902840_CONTIG_17589|Carp_edema_virus PRJNA902840_CONTIG_17589 Carp edema virus 4680 143 36 CLUSTER9_Carp_edema_virus|189|53 PRJNA1075480_S_NODE_36_length_9686_cov_68.302923_g23_i0|Carp_edema_virus|NR|9.15e-292|NA 188 53 PRJNA902840 17589 247 0.885057 2.18609079 Carp edema virus 1653087 Viruses Viruses 102.0 4.5799999999999995e-24 Carp edema virus Non-phage NR PRJNA902840_P_NODE_17589_length_247_cov_0.885057_g17476_i0   BCT22694.1 mRNA capping enzyme small subunit [Carp edema virus] BCT22694.1 1653087 g17476 i0 55.6 0.983805668 81 36 98.4 0 246 4 151 231 243 102.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   102.0   4.5799999999999995e-24
10236 10236 PRJNA902840_CONTIG_595|Wenzhou_pacific_spadenose_shark_paramyxovirus|CLUSTER1_Wenzhou_pacific_spadenose_shark_paramyxovirus|2|2 Zebrafish systemic paramyxovirus Novel PRJNA902840_CONTIG_595|Wenzhou_pacific_spadenose_shark_paramyxovirus PRJNA902840_CONTIG_595 Wenzhou pacific spadenose shark paramyxovirus 4 2 2 CLUSTER1_Wenzhou_pacific_spadenose_shark_paramyxovirus|2|2 PRJNA893346_P_NODE_703_length_1741_cov_2.574940_g577_i0|Wenzhou_pacific_spadenose_shark_paramyxovirus|NR|9.99e-16|NA 2 2 PRJNA902840 595 1249 2.869898 35.84502602 Wenzhou pacific spadenose shark paramyxovirus 2116452 Viruses Viruses 63.9 1.07e-06 Wenzhou pacific spadenose shark paramyxovirus Non-phage NR PRJNA902840_P_NODE_595_length_1249_cov_2.869898_g541_i0   YP_010790479.1 L protein [Wenzhou pacific spadenose shark paramyxovirus] YP_010790479.1 2116452 g541 i0 28.1 1.200960769 171 116 39.4 1 1248 757 1781 1951 1500 63.9 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Scoliodonvirus Scoliodonvirus scoliodontis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Scoliodonvirus;Zebrafish systemic paramyxovirus   Wenzhou pacific spadenose shark paramyxovirus     Viruses   Viruses   63.9   1.07e-06
10241 10241 PRJNA902840_CONTIG_1995|Wenzhou_pacific_spadenose_shark_paramyxovirus|CLUSTER2_Wenzhou_pacific_spadenose_shark_paramyxovirus|2|2 Zebrafish systemic paramyxovirus Novel PRJNA902840_CONTIG_1995|Wenzhou_pacific_spadenose_shark_paramyxovirus PRJNA902840_CONTIG_1995 Wenzhou pacific spadenose shark paramyxovirus 4 2 2 CLUSTER2_Wenzhou_pacific_spadenose_shark_paramyxovirus|2|2 PRJNA902840_P_NODE_1995_length_715_cov_1.799065_g1887_i0|Wenzhou_pacific_spadenose_shark_paramyxovirus|NR|8.2e-49|NA 2 2 PRJNA902840 1995 715 1.799065 12.86331475 Wenzhou pacific spadenose shark paramyxovirus 2116452 Viruses Viruses 183.0 8.199999999999999e-49 Wenzhou pacific spadenose shark paramyxovirus Non-phage NR PRJNA902840_P_NODE_1995_length_715_cov_1.799065_g1887_i0   YP_010790479.1 L protein [Wenzhou pacific spadenose shark paramyxovirus] YP_010790479.1 2116452 g1887 i0 43.1 0.973426573 232 132 97.3 0 19 714 770 1001 696 183.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Scoliodonvirus Scoliodonvirus scoliodontis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Scoliodonvirus;Zebrafish systemic paramyxovirus   Wenzhou pacific spadenose shark paramyxovirus     Viruses   Viruses   183.0   8.199999999999999e-49

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;