metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA896554"

2 rows where bioproject = "PRJNA896554"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
2162	2162	PRJNA896554_CONTIG_343\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA896554_CONTIG_343\|Zebrafish_picornavirus_2	PRJNA896554_CONTIG_343	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA896554	343	7208	32.789488	2363.466295	Zebrafish picornavirus 2	3063761	Viruses	Viruses	2471.0	0.0	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA896554_P_NODE_343_length_7208_cov_32.789488_g264_i0		Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g264	i0	91.699	0.649833518	1783	143	65.0	5	8	1788	7108	5329	4684	2471.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Wuhan sharpbelly picornavirus 1	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	2471.0	1439.0	0.0	0.0
10226	10226	PRJNA896554_CONTIG_152891\|Adintovirus_anguilla1\|CLUSTER4_Astyanax_tetra_cavefish_adintovirus\|3\|3	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA896554_CONTIG_152891\|Adintovirus_anguilla1	PRJNA896554_CONTIG_152891	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER4_Astyanax_tetra_cavefish_adintovirus\|3\|3	PRJNA1233465e_S_NODE_32714_length_308_cov_4.830116_g31404_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|3.71e-07\|NA	3	3	PRJNA896554	152891	250	0.870056	2.17514	Adintovirus anguilla1	3115889	Viruses	Viruses	122.0	3.7400000000000005e-32	Adintovirus anguilla1	Non-phage	NR	PRJNA896554_P_NODE_152891_length_250_cov_0.870056_g145351_i0		DBA49780.1 MAG TPA_asm: Penton [Adintovirus anguilla10665]	DBA49780.1	3115889	g145351	i0	61.7	0.972	81	31	97.2	0	250	8	157	237	243	122.0	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Adintovirus anguilla10665	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Adintovirus anguilla1			Viruses		Viruses		122.0		3.7400000000000005e-32

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;